Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Primates	ANCESTRAL SPECIES	12	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00760000119441.b #26	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00910000148269	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00760000119441.b #26	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000156923
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00910000148269	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00760000119441.b #26	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.k.a	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000156923
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00910000148269	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00760000119441.b #26	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.k.a	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000156923
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Drill	MODERN SPECIES	472	SGCE (ENSMLEG00000035862) #7	PEG10 (ENSMLEG00000035418) #8	PPP1R9A (ENSMLEG00000043621) #9	PON1 (ENSMLEG00000035189) #10	PON3 (ENSMLEG00000036159) #11	PON2 (ENSMLEG00000027200) #12	ASB4 (ENSMLEG00000036931) #13	PDK4 (ENSMLEG00000037032) #14	DYNC1I1 (ENSMLEG00000042478) #15	SLC25A13 (ENSMLEG00000038932) #16	ENSMLEG00000033727 #17	ENSMLEG00000036598 #18	ENSMLEG00000039568 #19	DLX6 (ENSMLEG00000025971) #20	DLX5 (ENSMLEG00000036746) #21	SDHAF3 (ENSMLEG00000037669) #22	ENSMLEG00000017301 #23	TAC1 (ENSMLEG00000040054) #24	ASNS (ENSMLEG00000028862) #25	ENSMLEG00000032398 #26	C1GALT1 (ENSMLEG00000044453) #27	COL28A1 (ENSMLEG00000015407) #28	MIOS (ENSMLEG00000037819) #29	RPA3 (ENSMLEG00000036302) #30	UMAD1 (ENSMLEG00000042525) #31	GLCCI1 (ENSMLEG00000040012) #32	ICA1 (ENSMLEG00000044079) #33
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00910000148269	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00510000046985.h.b.a.b	ENSGT00390000008610.a.b.a.b #23	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00760000119441.b #26	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000153095.g.b.a.a.a.b.a.a.b
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00910000148269	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000008610.a.b.a.b #23	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000153095.g.b.a.a.a.b.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000156923
Rhesus	MODERN SPECIES	13	ENSMMUG00000053116 ##8	ENSMMUG00000056378	PPP1R9A (ENSMMUG00000008008) #9	PON1 (ENSMMUG00000008011) #10	PON3 (ENSMMUG00000008013) #11	PON2 (ENSMMUG00000008014) #12	ASB4 (ENSMMUG00000008016) #13	PDK4 (ENSMMUG00000021389) #14	DYNC1I1 (ENSMMUG00000005915) #15	SLC25A13 (ENSMMUG00000005250) #16	ENSMMUG00000006974 #17	SEM1 (ENSMMUG00000004127)	ENSMMUG00000055860 #19	DLX6 (ENSMMUG00000049169) #20	DLX5 (ENSMMUG00000054481) #21	SDHAF3 (ENSMMUG00000014920) #22	TAC1 (ENSMMUG00000014823) #24	ASNS (ENSMMUG00000019157) #25	C1GALT1 (ENSMMUG00000054913) #27	COL28A1 (ENSMMUG00000040123) #28	MIOS (ENSMMUG00000000853) #29	RPA3 (ENSMMUG00000000854) #30	UMAD1 (ENSMMUG00000042110) #31	GLCCI1 (ENSMMUG00000045449) #32	ICA1 (ENSMMUG00000005435) #33	NXPH1 (ENSMMUG00000009711)	ENSMMUG00000053010	NDUFA4 (ENSMMUG00000020894)	PHF14 (ENSMMUG00000020895)	ENSMMUG00000063606	THSD7A (ENSMMUG00000012694)
Crab-eating macaque	MODERN SPECIES	13	PPP1R9A (ENSMFAG00000034343) #9	ENSMFAG00000062513	ENSMFAG00000055174	PON1 (ENSMFAG00000035691) #10	PON3 (ENSMFAG00000038783) #11	PON2 (ENSMFAG00000001162) #12	ASB4 (ENSMFAG00000041748) #13	PDK4 (ENSMFAG00000035180) #14	DYNC1I1 (ENSMFAG00000000094) #15	ENSMFAG00000007583	SLC25A13 (ENSMFAG00000037896) #16	ENSMFAG00000045122 #17	ENSMFAG00000001022 #18	DLX6 (ENSMFAG00000048863) #20	DLX5 (ENSMFAG00000035900) #21	ENSMFAG00000030531 #22	ENSMFAG00000046006 #23	ENSMFAG00000057765	TAC1 (ENSMFAG00000000287) #24	ASNS (ENSMFAG00000041092) #25	ENSMFAG00000055818	C1GALT1 (ENSMFAG00000031532) #27	ENSMFAG00000053535	COL28A1 (ENSMFAG00000000186) #28	MIOS (ENSMFAG00000034560) #29	ENSMFAG00000042056 #30	UMAD1 (ENSMFAG00000052878) #31	GLCCI1 (ENSMFAG00000038435) #32	ICA1 (ENSMFAG00000046093) #33	NXPH1 (ENSMFAG00000032515)	ENSMFAG00000040646
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994.u #25	ENSGT00760000119441.b #26	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.u #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.p.a	ENSGT00940000154268.f.o	ENSGT00940000156923
Hominidae	ANCESTRAL SPECIES	11	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994.u #25	ENSGT00940000155000.u #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.u #30	ENSGT00390000003051 #31	ENSGT00940000155405.kb	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.p.a	ENSGT00940000154268.f.o	ENSGT00940000156923	ENSGT00940000155427
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00950000183173.P #8	ENSGT00940000155538.ab #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994.u #25	ENSGT00390000004713.d.a	ENSGT00940000161875.c.b	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a	ENSGT00510000048486.g.a	ENSGT00940000153560.b.b.a	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT01060000248591.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00390000017961	ENSGT00940000158690	ENSGT01050000244891.B
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00950000183173.P #8	ENSGT00940000155538.ab #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994.u #25	ENSGT00390000004713.d.a	ENSGT00940000161875.c.b	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a	ENSGT00510000048486.g.a	ENSGT00940000153560.b.b.a	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT01060000248591.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00390000017961	ENSGT00940000158690	ENSGT01050000244891.B
Pan	ANCESTRAL SPECIES	13	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538.ab #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994.u #25	ENSGT00390000004713.d.a	ENSGT00940000161875.c.b	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a	ENSGT00510000048486.g.a	ENSGT00940000153560.b.b.a	ENSGT01060000248591.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00390000017961	ENSGT00940000158690	ENSGT01050000244891.B	ENSGT00940000160705.C.b
Chimpanzee	MODERN SPECIES	20	PEG10 (ENSPTRG00000023648) #8	ENSPTRG00000045048	PPP1R9A (ENSPTRG00000047956) #9	PON1 (ENSPTRG00000019417) #10	PON3 (ENSPTRG00000049985) #11	PON2 (ENSPTRG00000019419) #12	ASB4 (ENSPTRG00000019420) #13	PDK4 (ENSPTRG00000019421) #14	DYNC1I1 (ENSPTRG00000019422) #15	SLC25A13 (ENSPTRG00000019423) #16	ENSPTRG00000046820 #17	ENSPTRG00000019424 #18	ENSPTRG00000046969 #19	DLX6 (ENSPTRG00000019425) #20	DLX5 (ENSPTRG00000019426) #21	SDHAF3 (ENSPTRG00000019427) #22	TAC1 (ENSPTRG00000019428) #24	ASNS (ENSPTRG00000019429) #25	ENSPTRG00000046532	OCM2 (ENSPTRG00000019432)	LMTK2 (ENSPTRG00000019433)	BHLHA15 (ENSPTRG00000019434)	TECPR1 (ENSPTRG00000028478)	BRI3 (ENSPTRG00000019436)	BAIAP2L1 (ENSPTRG00000019438)	ENSPTRG00000049708	NPTX2 (ENSPTRG00000019440)	TMEM130 (ENSPTRG00000045055)	TRRAP (ENSPTRG00000019442)	SMURF1 (ENSPTRG00000019444)	KPNA7 (ENSPTRG00000019446)
Bonobo	MODERN SPECIES	20	ENSPPAG00000041811	PEG10 (ENSPPAG00000030053) #8	PPP1R9A (ENSPPAG00000041301) #9	PON1 (ENSPPAG00000035549) #10	PON3 (ENSPPAG00000032766) #11	PON2 (ENSPPAG00000028759) #12	ASB4 (ENSPPAG00000042126) #13	PDK4 (ENSPPAG00000027188) #14	DYNC1I1 (ENSPPAG00000043387) #15	SLC25A13 (ENSPPAG00000035337) #16	ENSPPAG00000036367 #17	ENSPPAG00000043520 #18	ENSPPAG00000005986 #19	ENSPPAG00000030516 #20	DLX5 (ENSPPAG00000031068) #21	SDHAF3 (ENSPPAG00000037725) #22	TAC1 (ENSPPAG00000033152) #24	ASNS (ENSPPAG00000033201) #25	ENSPPAG00000027488	LMTK2 (ENSPPAG00000032735)	BHLHA15 (ENSPPAG00000038305)	TECPR1 (ENSPPAG00000036532)	ENSPPAG00000031565	BAIAP2L1 (ENSPPAG00000037144)	ENSPPAG00000032935	TMEM130 (ENSPPAG00000016661)	TRRAP (ENSPPAG00000036292)	SMURF1 (ENSPPAG00000031727)	KPNA7 (ENSPPAG00000040756)	ENSPPAG00000032160	ARPC1A (ENSPPAG00000032222)
Human	MODERN SPECIES	19	COL1A2 (ENSG00000164692)	CASD1 (ENSG00000127995)	SGCE (ENSG00000127990) #7	PEG10 (ENSG00000242265) #8	PPP1R9A (ENSG00000158528) #9	PON1 (ENSG00000005421) #10	PON3 (ENSG00000105852) #11	PON2 (ENSG00000105854) #12	ASB4 (ENSG00000005981) #13	PDK4 (ENSG00000004799) #14	DYNC1I1 (ENSG00000158560) #15	SLC25A13 (ENSG00000004864) #16	SEM1 (ENSG00000127922)	DLX6 (ENSG00000006377) #20	DLX5 (ENSG00000105880) #21	SDHAF3 (ENSG00000196636) #22	TAC1 (ENSG00000006128) #24	ASNS (ENSG00000070669) #25	OCM2 (ENSG00000135175)	LMTK2 (ENSG00000164715)	BHLHA15 (ENSG00000180535)	TECPR1 (ENSG00000205356)	BRI3 (ENSG00000164713)	BAIAP2L1 (ENSG00000006453)	NPTX2 (ENSG00000106236)	TMEM130 (ENSG00000166448)	TRRAP (ENSG00000196367)	SMURF1 (ENSG00000198742)	KPNA7 (ENSG00000185467)	ENSG00000284292	ARPC1A (ENSG00000241685)
Orangutan	MODERN SPECIES	20	CASD1 (ENSPPYG00000017808)	SGCE (ENSPPYG00000017807) #7	PEG10 (ENSPPYG00000029380) #8	PPP1R9A (ENSPPYG00000017805) #9	PON1 (ENSPPYG00000017804) #10	PON3 (ENSPPYG00000017803) #11	PON2 (ENSPPYG00000017802) #12	ASB4 (ENSPPYG00000017801) #13	PDK4 (ENSPPYG00000017799) #14	DYNC1I1 (ENSPPYG00000017798) #15	SLC25A13 (ENSPPYG00000017797) #16	ENSPPYG00000017796 #17	ENSPPYG00000017795 #18	DLX6 (ENSPPYG00000017794) #20	DLX5 (ENSPPYG00000017793) #21	SDHAF3 (ENSPPYG00000017792) #22	TAC1 (ENSPPYG00000017791) #24	ASNS (ENSPPYG00000017790) #25	C1GALT1 (ENSPPYG00000030593) #27	COL28A1 (ENSPPYG00000017789) #28	MIOS (ENSPPYG00000017788) #29	RPA3 (ENSPPYG00000030236) #30	UMAD1 (ENSPPYG00000029638) #31	GLCCI1 (ENSPPYG00000017784) #32	ICA1 (ENSPPYG00000017783) #33	NXPH1 (ENSPPYG00000017782)	ENSPPYG00000030557	PHF14 (ENSPPYG00000017779)	THSD7A (ENSPPYG00000017778)	TMEM106B (ENSPPYG00000017777)	VWDE (ENSPPYG00000017776)
Gibbon	MODERN SPECIES	1	PEG10 (ENSNLEG00000015612) #8	ENSNLEG00000030717	PPP1R9A (ENSNLEG00000015622) #9	PON1 (ENSNLEG00000015705) #10	PON3 (ENSNLEG00000015766) #11	PON2 (ENSNLEG00000015782) #12	ASB4 (ENSNLEG00000015854) #13	PDK4 (ENSNLEG00000015859) #14	DYNC1I1 (ENSNLEG00000015889) #15	SLC25A13 (ENSNLEG00000015945) #16	ENSNLEG00000015998 #17	ENSNLEG00000016002 #18	ENSNLEG00000032740 #19	DLX6 (ENSNLEG00000016008) #20	ENSNLEG00000016010 #21	SDHAF3 (ENSNLEG00000016014) #22	TAC1 (ENSNLEG00000016015) #24	ASNS (ENSNLEG00000016044) #25	ENSNLEG00000033587 #26	C1GALT1 (ENSNLEG00000016087) #27	COL28A1 (ENSNLEG00000016093) #28	MIOS (ENSNLEG00000016134) #29	RPA3 (ENSNLEG00000033298) #30	UMAD1 (ENSNLEG00000016155) #31	ENSNLEG00000035067	ENSNLEG00000016158 #32	ICA1 (ENSNLEG00000016162) #33	NXPH1 (ENSNLEG00000016182)	ENSNLEG00000032207	ENSNLEG00000033241	PHF14 (ENSNLEG00000016184)
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.i.a.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Mas night monkey	MODERN SPECIES	776	PEG10 (ENSANAG00000021637) #8	PPP1R9A (ENSANAG00000005419) #9	PON1 (ENSANAG00000032641) #10	PON3 (ENSANAG00000023332) #11	PON2 (ENSANAG00000031707) #12	ASB4 (ENSANAG00000023999) #13	PDK4 (ENSANAG00000033937) #14	DYNC1I1 (ENSANAG00000027689) #15	SLC25A13 (ENSANAG00000035481) #16	ENSANAG00000036040 #17	ENSANAG00000033458 #18	ENSANAG00000025118 #19	DLX6 (ENSANAG00000003767) #20	ENSANAG00000021116	DLX5 (ENSANAG00000024128) #21	SDHAF3 (ENSANAG00000037083) #22	TAC1 (ENSANAG00000020783) #24	ENSANAG00000030964 #25	C1GALT1 (ENSANAG00000024885) #27	COL28A1 (ENSANAG00000031546) #28	ENSANAG00000037952	MIOS (ENSANAG00000031901) #29	RPA3 (ENSANAG00000021050) #30	UMAD1 (ENSANAG00000035021) #31	GLCCI1 (ENSANAG00000022639) #32	ICA1 (ENSANAG00000037411) #33	NXPH1 (ENSANAG00000021516)	ENSANAG00000038257	PHF14 (ENSANAG00000037061)	THSD7A (ENSANAG00000022340)	TMEM106B (ENSANAG00000018667)
Cebidae	ANCESTRAL SPECIES	9	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.i.a.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Marmoset	MODERN SPECIES	20	PON3 (ENSCJAG00000045831) #11	PON2 (ENSCJAG00000013295) #12	ASB4 (ENSCJAG00000013280) #13	PDK4 (ENSCJAG00000047805) #14	ENSCJAG00000084017	DYNC1I1 (ENSCJAG00000000528) #15	SLC25A13 (ENSCJAG00000000554) #16	ENSCJAG00000042685	ENSCJAG00000076866	ENSCJAG00000043666 #18	ENSCJAG00000080818	ENSCJAG00000075240	ENSCJAG00000076106 #19	DLX6 (ENSCJAG00000085344) #20	DLX5 (ENSCJAG00000000589) #21	SDHAF3 (ENSCJAG00000042876) #22	ENSCJAG00000085680	ENSCJAG00000068961 #24	ASNS (ENSCJAG00000000618) #25	ENSCJAG00000082426	C1GALT1 (ENSCJAG00000057327) #27	COL28A1 (ENSCJAG00000000636) #28	MIOS (ENSCJAG00000000686) #29	RPA3 (ENSCJAG00000085113) #30	ENSCJAG00000083800	UMAD1 (ENSCJAG00000087186) #31	GLCCI1 (ENSCJAG00000047899) #32	ICA1 (ENSCJAG00000000720) #33	ENSCJAG00000086236	ENSCJAG00000070029	NXPH1 (ENSCJAG00000000746)
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155984.b	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.w #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f.i.a.a.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Capuchin	MODERN SPECIES	37	PEG10 (ENSCCAG00000022728) #8	PPP1R9A (ENSCCAG00000029366) #9	PON1 (ENSCCAG00000037019) #10	PON3 (ENSCCAG00000027557) #11	PON2 (ENSCCAG00000032651) #12	ASB4 (ENSCCAG00000029647) #13	PDK4 (ENSCCAG00000030349) #14	DYNC1I1 (ENSCCAG00000027487) #15	ENSCCAG00000033792 #16	ENSCCAG00000030816 #17	ENSCCAG00000032220 #18	DLX6 (ENSCCAG00000022645) #20	ENSCCAG00000007505	DLX5 (ENSCCAG00000018356) #21	ENSCCAG00000019570	SDHAF3 (ENSCCAG00000029465) #22	TAC1 (ENSCCAG00000022732) #24	ENSCCAG00000032950 #25	ENSCCAG00000008594	C1GALT1 (ENSCCAG00000037539) #27	COL28A1 (ENSCCAG00000034062) #28	MIOS (ENSCCAG00000033208) #29	ENSCCAG00000021943	ENSCCAG00000025095 #30	UMAD1 (ENSCCAG00000028681) #31	GLCCI1 (ENSCCAG00000021860) #32	ICA1 (ENSCCAG00000024119) #33	NXPH1 (ENSCCAG00000001523)	ENSCCAG00000007645	PHF14 (ENSCCAG00000021944)	THSD7A (ENSCCAG00000028361)
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	44	PON1 (ENSSBOG00000035653) #10	PON3 (ENSSBOG00000011528) #11	PON2 (ENSSBOG00000029443) #12	ASB4 (ENSSBOG00000022820) #13	PDK4 (ENSSBOG00000029811) #14	ENSSBOG00000032883	DYNC1I1 (ENSSBOG00000033850) #15	SLC25A13 (ENSSBOG00000035203) #16	ENSSBOG00000035070 #17	ENSSBOG00000031330	ENSSBOG00000034946 #18	ENSSBOG00000033289 #19	DLX6 (ENSSBOG00000020606) #20	ENSSBOG00000026742	DLX5 (ENSSBOG00000032115) #21	SDHAF3 (ENSSBOG00000031188) #22	TAC1 (ENSSBOG00000031415) #24	ASNS (ENSSBOG00000031816) #25	ENSSBOG00000019705	C1GALT1 (ENSSBOG00000026512) #27	ENSSBOG00000032452	COL28A1 (ENSSBOG00000035682) #28	MIOS (ENSSBOG00000017338) #29	ENSSBOG00000027188	RPA3 (ENSSBOG00000019538) #30	UMAD1 (ENSSBOG00000029436) #31	GLCCI1 (ENSSBOG00000032440) #32	ICA1 (ENSSBOG00000031664) #33	NXPH1 (ENSSBOG00000033774)	ENSSBOG00000015022	ENSSBOG00000019517
Bolivian squirrel monkey	MODERN SPECIES	213	CRABP1 (ENSSBOG00000031064)	SKIC8 (ENSSBOG00000029858)	DNAJA4 (ENSSBOG00000014038)	ACSBG1 (ENSSBOG00000008273)	IDH3A (ENSSBOG00000030132)	CIB2 (ENSSBOG00000002809)	SH2D7 (ENSSBOG00000031296)	TBC1D2B (ENSSBOG00000013439)	LINGO1 (ENSSBOG00000029752)	HMG20A (ENSSBOG00000030971)	PEAK1 (ENSSBOG00000021077)	TSPAN3 (ENSSBOG00000032618)	PSTPIP1 (ENSSBOG00000034632)	ENSSBOG00000035268	SCAPER (ENSSBOG00000033819)	ENSSBOG00000027239 #22	ISL2 (ENSSBOG00000029930)	ETFA (ENSSBOG00000021744)	TMEM266 (ENSSBOG00000025049)	NRG4 (ENSSBOG00000020777)	FBXO22 (ENSSBOG00000028051)	UBE2Q2 (ENSSBOG00000028322)	ODF3L1 (ENSSBOG00000028336)	CSPG4 (ENSSBOG00000025230)	SNX33 (ENSSBOG00000023576)	ENSSBOG00000006542	SNUPN (ENSSBOG00000029086)	PTPN9 (ENSSBOG00000005090)	SIN3A (ENSSBOG00000027280)	MAN2C1 (ENSSBOG00000034236)	NEIL1 (ENSSBOG00000027799)
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Lemuriformes_a	ANCESTRAL SPECIES	91	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000002695 #17	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a
Coquerels sifaka	MODERN SPECIES	83	PEG10 (ENSPCOG00000017433) #8	ENSPCOG00000023235	PPP1R9A (ENSPCOG00000026221) #9	PON1 (ENSPCOG00000018614) #10	PON3 (ENSPCOG00000026838) #11	PON2 (ENSPCOG00000023699) #12	ASB4 (ENSPCOG00000024006) #13	PDK4 (ENSPCOG00000015783) #14	DYNC1I1 (ENSPCOG00000018842) #15	SLC25A13 (ENSPCOG00000021703) #16	ENSPCOG00000025433 #17	ENSPCOG00000018050	ENSPCOG00000022335 #18	DLX6 (ENSPCOG00000018676) #20	DLX5 (ENSPCOG00000024882) #21	ENSPCOG00000016090 #22	TAC1 (ENSPCOG00000021374) #24	ENSPCOG00000025256 #25	C1GALT1 (ENSPCOG00000015839) #27	ENSPCOG00000018949	COL28A1 (ENSPCOG00000022435) #28	MIOS (ENSPCOG00000011418) #29	RPA3 (ENSPCOG00000022659) #30	UMAD1 (ENSPCOG00000016044) #31	GLCCI1 (ENSPCOG00000008498) #32	ICA1 (ENSPCOG00000003590) #33	NXPH1 (ENSPCOG00000018464)	ENSPCOG00000018675
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Tree shrew	MODERN SPECIES	2889														DLX6 (ENSTBEG00000005608) #20	DLX5 (ENSTBEG00000006090) #21	SDHAF3 (ENSTBEG00000006332) #22
Glires	ANCESTRAL SPECIES	18	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Lagomorpha	ANCESTRAL SPECIES	50	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.b	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	1	SGCE (ENSOCUG00000012309) #7	ENSOCUG00000027535 #8	PPP1R9A (ENSOCUG00000005128) #9	PON1 (ENSOCUG00000005136) #10	PON3 (ENSOCUG00000033613) #11	PON2 (ENSOCUG00000002014) #12	ASB4 (ENSOCUG00000017113) #13	PDK4 (ENSOCUG00000017120) #14	ENSOCUG00000025405	DYNC1I1 (ENSOCUG00000012213) #15	SLC25A13 (ENSOCUG00000009953) #16	ENSOCUG00000026246 #18	ENSOCUG00000025551	DLX6 (ENSOCUG00000008609) #20	DLX5 (ENSOCUG00000008599) #21	ENSOCUG00000015296 #22	ENSOCUG00000006182 #24	ASNS (ENSOCUG00000022945) #25	ENSOCUG00000026002 #27	COL28A1 (ENSOCUG00000024805) #28	ENSOCUG00000000464	MIOS (ENSOCUG00000000466) #29	RPA3 (ENSOCUG00000000467) #30	ENSOCUG00000034765	UMAD1 (ENSOCUG00000035573) #31	ENSOCUG00000016806 #32	ICA1 (ENSOCUG00000016815) #33	ENSOCUG00000027084	NXPH1 (ENSOCUG00000012983)	ENSOCUG00000035586	ENSOCUG00000030563
Rabbit	MODERN SPECIES	7	ENSOCUG00000002381	NUAK2 (ENSOCUG00000002318)	KLHDC8A (ENSOCUG00000023010)	LEMD1 (ENSOCUG00000009235)	ENSOCUG00000031274	CDK18 (ENSOCUG00000009635)	MFSD4A (ENSOCUG00000001241)	ELK4 (ENSOCUG00000014477)	SLC45A3 (ENSOCUG00000025013)	NUCKS1 (ENSOCUG00000014895)	RAB29 (ENSOCUG00000000426)	SLC41A1 (ENSOCUG00000028187)	PM20D1 (ENSOCUG00000000427)	SLC26A9 (ENSOCUG00000022624)	CTSE (ENSOCUG00000001856)	ENSOCUG00000035554 #22	AVPR1B (ENSOCUG00000007352)	ENSOCUG00000022194	ENSOCUG00000012175	RASSF5 (ENSOCUG00000015444)	EIF2D (ENSOCUG00000015451)	DYRK3 (ENSOCUG00000007421)	MAPKAPK2 (ENSOCUG00000014252)	ENSOCUG00000014265	IL19 (ENSOCUG00000014272)	IL20 (ENSOCUG00000014282)	ENSOCUG00000014305	PIGR (ENSOCUG00000014317)	ENSOCUG00000014337	C1orf116 (ENSOCUG00000014346)	YOD1 (ENSOCUG00000014349)
Rodentia	ANCESTRAL SPECIES	12	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Kangaroo rat	MODERN SPECIES	541		Casd1 (ENSDORG00000008747)	Sgce (ENSDORG00000008753) #7	Peg10 (ENSDORG00000008758) #8	Ppp1r9a (ENSDORG00000013490) #9	Pon1 (ENSDORG00000013493) #10	Pon3 (ENSDORG00000014679) #11	Pon2 (ENSDORG00000014680) #12	Asb4 (ENSDORG00000014681) #13	Pdk4 (ENSDORG00000014682) #14	Dync1i1 (ENSDORG00000013069) #15	Slc25a13 (ENSDORG00000013071) #16	Sem1 (ENSDORG00000000070)	ENSDORG00000009580 #20	Dlx5 (ENSDORG00000009583) #21	Sdhaf3 (ENSDORG00000026031) #22	ENSDORG00000025132
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Lesser Egyptian jerboa	MODERN SPECIES	59	Sgce (ENSJJAG00000017688) #7	Peg10 (ENSJJAG00000011361) #8	ENSJJAG00000004763	Ppp1r9a (ENSJJAG00000014236) #9	Pon1 (ENSJJAG00000019417) #10	Pon3 (ENSJJAG00000014617) #11	Pon2 (ENSJJAG00000014340) #12	Asb4 (ENSJJAG00000014914) #13	Pdk4 (ENSJJAG00000006344) #14	Dync1i1 (ENSJJAG00000005705) #15	Slc25a13 (ENSJJAG00000013214) #16	Sem1 (ENSJJAG00000021778)	ENSJJAG00000021424	Dlx6 (ENSJJAG00000009741) #20	Dlx5 (ENSJJAG00000021396) #21	Sdhaf3 (ENSJJAG00000008045) #22	Tac1 (ENSJJAG00000013765) #24	ENSJJAG00000011602	Asns (ENSJJAG00000011697) #25	ENSJJAG00000024015 #27	Col28a1 (ENSJJAG00000022460) #28	Mios (ENSJJAG00000020004) #29	Rpa3 (ENSJJAG00000005379) #30	ENSJJAG00000022866	Umad1 (ENSJJAG00000021097) #31	ENSJJAG00000024066 #32	ENSJJAG00000021248 #33	Nxph1 (ENSJJAG00000020417)	ENSJJAG00000005425	Kcnk9 (ENSJJAG00000018506)	ENSJJAG00000015586
Muroidea	ANCESTRAL SPECIES	8	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Upper Galilee mountains blind mole rat	MODERN SPECIES	1733											Dync1i1 (ENSNGAG00000010254) #15	Slc25a13 (ENSNGAG00000004196) #16	Sem1 (ENSNGAG00000004905)	Dlx6 (ENSNGAG00000023627) #20	Dlx5 (ENSNGAG00000013507) #21	Sdhaf3 (ENSNGAG00000019837) #22	Tac1 (ENSNGAG00000013565) #24	Asns (ENSNGAG00000015284) #25	ENSNGAG00000013857 #27	Col28a1 (ENSNGAG00000003512) #28	ENSNGAG00000001986 #29	Rpa3 (ENSNGAG00000023730) #30
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Prairie vole	MODERN SPECIES	350	Col1a2 (ENSMOCG00000009504)	Casd1 (ENSMOCG00000020135)	Sgce (ENSMOCG00000011802) #7	Peg10 (ENSMOCG00000003210) #8	Ppp1r9a (ENSMOCG00000010035) #9	Pon1 (ENSMOCG00000007036) #10	Pon3 (ENSMOCG00000013174) #11	Pon2 (ENSMOCG00000013410) #12	Asb4 (ENSMOCG00000000254) #13	Pdk4 (ENSMOCG00000011306) #14	Dync1i1 (ENSMOCG00000016558) #15	Slc25a13 (ENSMOCG00000010461) #16	Sem1 (ENSMOCG00000001349)	Dlx6 (ENSMOCG00000010083) #20	Dlx5 (ENSMOCG00000021591) #21	Sdhaf3 (ENSMOCG00000004621) #22	Tac1 (ENSMOCG00000014686) #24	Asns (ENSMOCG00000011530) #25	C1galt1 (ENSMOCG00000009499) #27	Col28a1 (ENSMOCG00000012197) #28	Mios (ENSMOCG00000017559) #29	Rpa3 (ENSMOCG00000011090) #30	Umad1 (ENSMOCG00000016635) #31	Glcci1 (ENSMOCG00000011098) #32	ENSMOCG00000019705 #33	ENSMOCG00000008517 #33	Nxph1 (ENSMOCG00000015073)	Ndufa4 (ENSMOCG00000021704)	Phf14 (ENSMOCG00000016636)	ENSMOCG00000008159	Thsd7a (ENSMOCG00000019383)
Northern American deer mouse	MODERN SPECIES	16	Casd1 (ENSPEMG00000014646)	Sgce (ENSPEMG00000012336) #7	Peg10 (ENSPEMG00000028270) #8	ENSPEMG00000031065	Ppp1r9a (ENSPEMG00000023259) #9	Pon1 (ENSPEMG00000021811) #10	Pon3 (ENSPEMG00000029851) #11	Pon2 (ENSPEMG00000022778) #12	Asb4 (ENSPEMG00000021425) #13	Pdk4 (ENSPEMG00000000623) #14	Dync1i1 (ENSPEMG00000009653) #15	Slc25a13 (ENSPEMG00000010195) #16	Sem1 (ENSPEMG00000023151)	Dlx6 (ENSPEMG00000003902) #20	Dlx5 (ENSPEMG00000010445) #21	Sdhaf3 (ENSPEMG00000025504) #22	Tac1 (ENSPEMG00000023534) #24	Asns (ENSPEMG00000024254) #25	C1galt1 (ENSPEMG00000001879) #27	Col28a1 (ENSPEMG00000018994) #28	Mios (ENSPEMG00000014859) #29	Rpa3 (ENSPEMG00000028617) #30	ENSPEMG00000025657	Glcci1 (ENSPEMG00000006869) #32	Ica1 (ENSPEMG00000011992) #33	Nxph1 (ENSPEMG00000006871)	ENSPEMG00000002763	Ndufa4 (ENSPEMG00000013663)	Phf14 (ENSPEMG00000013539)	Thsd7a (ENSPEMG00000011896)	Tmem106b (ENSPEMG00000010222)
Cricetinae	ANCESTRAL SPECIES	23	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Golden Hamster	MODERN SPECIES	756	Col1a2 (ENSMAUG00000018627)	Casd1 (ENSMAUG00000017786)	Sgce (ENSMAUG00000022202) #7	Peg10 (ENSMAUG00000018656) #8	Ppp1r9a (ENSMAUG00000017217) #9	Pon1 (ENSMAUG00000016513) #10	Pon3 (ENSMAUG00000007231) #11	Pon2 (ENSMAUG00000019926) #12	Asb4 (ENSMAUG00000017354) #13	Pdk4 (ENSMAUG00000014529) #14	Dync1i1 (ENSMAUG00000012920) #15	Slc25a13 (ENSMAUG00000013308) #16	Sem1 (ENSMAUG00000016213)	Dlx6 (ENSMAUG00000017933) #20	Dlx5 (ENSMAUG00000002760) #21	Sdhaf3 (ENSMAUG00000020491) #22	Tac1 (ENSMAUG00000000832) #24	Asns (ENSMAUG00000004155) #25	C1galt1 (ENSMAUG00000011248) #27	Col28a1 (ENSMAUG00000020116) #28	Mios (ENSMAUG00000009947) #29	ENSMAUG00000000402 #30	Umad1 (ENSMAUG00000011521) #31	Glcci1 (ENSMAUG00000009620) #32	ENSMAUG00000008585 #33
Chinese hamster chok1gshd	MODERN SPECIES	54	ENSCGRG00001012942 #9	ENSCGRG00001022001 #9	Pon1 (ENSCGRG00001017580) #10	Pon3 (ENSCGRG00001017513) #11	Pon2 (ENSCGRG00001017926) #12	Asb4 (ENSCGRG00001002568) #13	Pdk4 (ENSCGRG00001014183) #14	ENSCGRG00001022786 #15	ENSCGRG00001003096 #15	Slc25a13 (ENSCGRG00001024718) #16	ENSCGRG00001023047	Sem1 (ENSCGRG00001000539)	ENSCGRG00001016396	Dlx6 (ENSCGRG00001015244) #20	Dlx5 (ENSCGRG00001001362) #21	Sdhaf3 (ENSCGRG00001012553) #22	Tac1 (ENSCGRG00001020738) #24	ASNS (ENSCGRG00001015428) #25	ENSCGRG00001016873 #27	Col28a1 (ENSCGRG00001018669) #28	Mios (ENSCGRG00001022654) #29	Rpa3 (ENSCGRG00001004183) #30	Umad1 (ENSCGRG00001019337) #31	Glcci1 (ENSCGRG00001020867) #32	Ica1 (ENSCGRG00001013759) #33	Nxph1 (ENSCGRG00001017708)	ENSCGRG00001004842	ENSCGRG00001013970	Ndufa4 (ENSCGRG00001012421)	Phf14 (ENSCGRG00001004536)	Thsd7a (ENSCGRG00001021435)
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Rat	MODERN SPECIES	14	Ppp1r9a (ENSRNOG00000008869) #9	Pon1 (ENSRNOG00000008902) #10	Pon3 (ENSRNOG00000009096) #11	Pon2 (ENSRNOG00000009112) #12	Asb4 (ENSRNOG00000009197) #13	ENSRNOG00000069335	Pdk4 (ENSRNOG00000009565) #14	AC095825.1 (ENSRNOG00000033695)	Dync1i1 (ENSRNOG00000009700) #15	Slc25a13 (ENSRNOG00000009957) #16	LOC108350671 (ENSRNOG00000064781)	Sem1 (ENSRNOG00000010420)	Dlx6 (ENSRNOG00000063630) #20	ENSRNOG00000068262	Dlx5 (ENSRNOG00000010905) #21	Sdhaf3 (ENSRNOG00000011283) #22	Asns (ENSRNOG00000007546) #25	Polr1d-ps1 (ENSRNOG00000065557)	C1galt1 (ENSRNOG00000007804) #27	Col28a1 (ENSRNOG00000033618) #28	Mios (ENSRNOG00000007924) #29	Rpa3 (ENSRNOG00000008309) #30	Glcci1 (ENSRNOG00000008524) #32	Ica1 (ENSRNOG00000008628) #33	Nxph1 (ENSRNOG00000008939)	Rps4x-ps9 (ENSRNOG00000029574)	LOC500028 (ENSRNOG00000008962)	ENSRNOG00000065391	LOC680964 (ENSRNOG00000047566)	ENSRNOG00000066267	Ndufa4 (ENSRNOG00000005512)
Mus	ANCESTRAL SPECIES	20	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051.c #31	ENSGT00950000183046.b.n #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Ryukyu mouse	MODERN SPECIES	15	Col1a2 (MGP_CAROLIEiJ_G0028075)	Casd1 (MGP_CAROLIEiJ_G0028076)	Sgce (MGP_CAROLIEiJ_G0028077) #7	MGP_CAROLIEiJ_G0028078 #8	Ppp1r9a (MGP_CAROLIEiJ_G0028079) #9	Pon1 (MGP_CAROLIEiJ_G0028080) #10	Pon3 (MGP_CAROLIEiJ_G0028081) #11	Pon2 (MGP_CAROLIEiJ_G0028082) #12	Asb4 (MGP_CAROLIEiJ_G0028083) #13	Pdk4 (MGP_CAROLIEiJ_G0028084) #14	Dync1i1 (MGP_CAROLIEiJ_G0028085) #15	MGP_CAROLIEiJ_G0028086 #16	Sem1 (MGP_CAROLIEiJ_G0028087)	Dlx6 (MGP_CAROLIEiJ_G0028088) #20	Dlx5 (MGP_CAROLIEiJ_G0028089) #21	Sdhaf3 (MGP_CAROLIEiJ_G0028090) #22	Tac1 (MGP_CAROLIEiJ_G0028091) #24	Asns (MGP_CAROLIEiJ_G0028092) #25	C1galt1 (MGP_CAROLIEiJ_G0028093) #27	Col28a1 (MGP_CAROLIEiJ_G0028094) #28	Mios (MGP_CAROLIEiJ_G0028095) #29	Rpa3 (MGP_CAROLIEiJ_G0028096) #30	Umad1 (MGP_CAROLIEiJ_G0028097) #31	MGP_CAROLIEiJ_G0028098 #31	Glcci1 (MGP_CAROLIEiJ_G0028099) #32	Ica1 (MGP_CAROLIEiJ_G0028100) #33	Nxph1 (MGP_CAROLIEiJ_G0028101)	Ndufa4 (MGP_CAROLIEiJ_G0028102)	MGP_CAROLIEiJ_G0028103	MGP_CAROLIEiJ_G0028104	Tmem106b (MGP_CAROLIEiJ_G0028105)
Mus_B	ANCESTRAL SPECIES	20	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.k #30	ENSGT00390000003051.c #31	ENSGT00950000183046.b.n #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Mouse	MODERN SPECIES	15	Col1a2 (ENSMUSG00000029661)	Casd1 (ENSMUSG00000015189)	Sgce (ENSMUSG00000004631) #7	Peg10 (ENSMUSG00000092035) #8	Ppp1r9a (ENSMUSG00000032827) #9	Pon1 (ENSMUSG00000002588) #10	Pon3 (ENSMUSG00000029759) #11	Pon2 (ENSMUSG00000032667) #12	Asb4 (ENSMUSG00000042607) #13	Pdk4 (ENSMUSG00000019577) #14	Dync1i1 (ENSMUSG00000029757) #15	Slc25a13 (ENSMUSG00000015112) #16	Sem1 (ENSMUSG00000042541)	Dlx6 (ENSMUSG00000029754) #20	Dlx5 (ENSMUSG00000029755) #21	Sdhaf3 (ENSMUSG00000042505) #22	Tac1 (ENSMUSG00000061762) #24	Asns (ENSMUSG00000029752) #25	C1galt1 (ENSMUSG00000042460) #27	Col28a1 (ENSMUSG00000068794) #28	Mios (ENSMUSG00000042447) #29	Rpa3 (ENSMUSG00000012483) #30	Umad1 (ENSMUSG00000089862) #31	Glcci1 (ENSMUSG00000029638) #32	Ica1 (ENSMUSG00000062995) #33	Nxph1 (ENSMUSG00000046178)	Ndufa4 (ENSMUSG00000029632)	Phf14 (ENSMUSG00000029629)	Thsd7a (ENSMUSG00000032625)	Tmem106b (ENSMUSG00000029571)	Vwde (ENSMUSG00000079679)
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.k #30	ENSGT00390000003051.c #31	ENSGT00950000183046.b.n #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
spretus	MODERN SPECIES	15	Col1a2 (MGP_SPRETEiJ_G0029075)	Casd1 (MGP_SPRETEiJ_G0029076)	Sgce (MGP_SPRETEiJ_G0029077) #7	MGP_SPRETEiJ_G0029078 ##8	Ppp1r9a (MGP_SPRETEiJ_G0029079) #9	Pon1 (MGP_SPRETEiJ_G0029080) #10	MGP_SPRETEiJ_G0029081 #11	Pon2 (MGP_SPRETEiJ_G0029082) #12	Asb4 (MGP_SPRETEiJ_G0029083) #13	Pdk4 (MGP_SPRETEiJ_G0029084) #14	Dync1i1 (MGP_SPRETEiJ_G0029085) #15	Slc25a13 (MGP_SPRETEiJ_G0029086) #16	Sem1 (MGP_SPRETEiJ_G0029087)	Dlx6 (MGP_SPRETEiJ_G0029088) #20	Dlx5 (MGP_SPRETEiJ_G0029089) #21	Sdhaf3 (MGP_SPRETEiJ_G0029090) #22	Tac1 (MGP_SPRETEiJ_G0029091) #24	Asns (MGP_SPRETEiJ_G0029092) #25	C1galt1 (MGP_SPRETEiJ_G0029093) #27	Col28a1 (MGP_SPRETEiJ_G0029094) #28	Mios (MGP_SPRETEiJ_G0029095) #29	Rpa3 (MGP_SPRETEiJ_G0029096) #30	Umad1 (MGP_SPRETEiJ_G0029097) #31	MGP_SPRETEiJ_G0029098 #31	Glcci1 (MGP_SPRETEiJ_G0029099) #32	Ica1 (MGP_SPRETEiJ_G0029100) #33	Nxph1 (MGP_SPRETEiJ_G0029101)	Ndufa4 (MGP_SPRETEiJ_G0029102)	MGP_SPRETEiJ_G0029103	Thsd7a (MGP_SPRETEiJ_G0029104)	Tmem106b (MGP_SPRETEiJ_G0029105)
Steppe mouse	MODERN SPECIES	3097			Ppp1r9a (ENSMSIG00000008364) #9	Pon1 (ENSMSIG00000008292) #10	Pon3 (ENSMSIG00000008274) #11	Pon2 (ENSMSIG00000008259) #12	Asb4 (ENSMSIG00000008239) #13	Pdk4 (ENSMSIG00000008220) #14	ENSMSIG00000008217	Dync1i1 (ENSMSIG00000007953) #15	Slc25a13 (ENSMSIG00000007876) #16	Sem1 (ENSMSIG00000007847)	Dlx6 (ENSMSIG00000007812) #20	ENSMSIG00000007792	Dlx5 (ENSMSIG00000007781) #21	ENSMSIG00000007764 #22
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b.l #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Naked mole-rat female	MODERN SPECIES	5	Peg10 (ENSHGLG00000039925) #8	PPP1R9A (ENSHGLG00000002745) #9	PON1 (ENSHGLG00000048207) #10	PON3 (ENSHGLG00000003028) #11	PON2 (ENSHGLG00000044448) #12	ASB4 (ENSHGLG00000000818) #13	PDK4 (ENSHGLG00000044007) #14	DYNC1I1 (ENSHGLG00000000924) #15	ENSHGLG00000000847	ENSHGLG00000008153	SLC25A13 (ENSHGLG00000001078) #16	SEM1 (ENSHGLG00000001228)	DLX6 (ENSHGLG00000036463) #20	DLX5 (ENSHGLG00000035624) #21	ENSHGLG00000003962	ACN9 (ENSHGLG00000001283) #22	TAC1 (ENSHGLG00000001397) #24	ENSHGLG00000001445 #25	ENSHGLG00000001496 #27	ENSHGLG00000001565 #28	ENSHGLG00000001680	MIOS (ENSHGLG00000001710) #29	ENSHGLG00000039732 #30	ENSHGLG00000037539 #31	ENSHGLG00000034935	ENSHGLG00000002785	GLCCI1 (ENSHGLG00000002931) #32	ICA1 (ENSHGLG00000003048) #33	ENSHGLG00000038096	ENSHGLG00000036107	ENSHGLG00000045635
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b.l #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b.l #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Long-tailed chinchilla	MODERN SPECIES	139	COL1A2 (ENSCLAG00000009286)	CASD1 (ENSCLAG00000007565)	SGCE (ENSCLAG00000007837) #7	Peg10 (ENSCLAG00000017695) #8	PPP1R9A (ENSCLAG00000008731) #9	PON1 (ENSCLAG00000009506) #10	PON3 (ENSCLAG00000009609) #11	PON2 (ENSCLAG00000009728) #12	ASB4 (ENSCLAG00000009834) #13	PDK4 (ENSCLAG00000017289) #14	DYNC1I1 (ENSCLAG00000006396) #15	SLC25A13 (ENSCLAG00000002917) #16	SEM1 (ENSCLAG00000002949)	DLX6 (ENSCLAG00000002971) #20	DLX5 (ENSCLAG00000002987) #21	SDHAF3 (ENSCLAG00000003011) #22	TAC1 (ENSCLAG00000003086) #24	ENSCLAG00000003157 #25	ENSCLAG00000003237 #25	C1GALT1 (ENSCLAG00000003286) #27	COL28A1 (ENSCLAG00000003344) #28	MIOS (ENSCLAG00000003461) #29	RPA3 (ENSCLAG00000003500) #30	UMAD1 (ENSCLAG00000003569) #31	GLCCI1 (ENSCLAG00000003639) #32	ICA1 (ENSCLAG00000003729) #33	NXPH1 (ENSCLAG00000003986)	NDUFA4 (ENSCLAG00000004050)	PHF14 (ENSCLAG00000004153)	THSD7A (ENSCLAG00000003554)	TMEM106B (ENSCLAG00000003761)
Degu	MODERN SPECIES	91	COL1A2 (ENSODEG00000010146)	CASD1 (ENSODEG00000010520)	ENSODEG00000009551 #7	PEG10 (ENSODEG00000009969) #8	PPP1R9A (ENSODEG00000010739) #9	PON1 (ENSODEG00000009868) #10	PON3 (ENSODEG00000011235) #11	PON2 (ENSODEG00000010755) #12	ASB4 (ENSODEG00000010657) #13	PDK4 (ENSODEG00000010586) #14	DYNC1I1 (ENSODEG00000010855) #15	SLC25A13 (ENSODEG00000011496) #16	ENSODEG00000010570	DLX6 (ENSODEG00000010072) #20	DLX5 (ENSODEG00000010609) #21	SDHAF3 (ENSODEG00000009620) #22
Guinea pig	MODERN SPECIES	11	SGCE (ENSCPOG00000010672) #7	ENSCPOG00000037165 ##8	PPP1R9A (ENSCPOG00000011567) #9	ENSCPOG00000010259	PON1 (ENSCPOG00000037806) #10	PON3 (ENSCPOG00000039258) #11	PON2 (ENSCPOG00000007257) #12	ASB4 (ENSCPOG00000014245) #13	PDK4 (ENSCPOG00000033399) #14	ENSCPOG00000037546 #15	ENSCPOG00000011054 #15	SLC25A13 (ENSCPOG00000013200) #16	SEM1 (ENSCPOG00000035520)	DLX6 (ENSCPOG00000001795) #20	DLX5 (ENSCPOG00000001796) #21	SDHAF3 (ENSCPOG00000014057) #22	TAC1 (ENSCPOG00000011245) #24	ENSCPOG00000009841 #25	ENSCPOG00000033504 #27	COL28A1 (ENSCPOG00000021196) #28	MIOS (ENSCPOG00000011743) #29	RPA3 (ENSCPOG00000036936) #30	UMAD1 (ENSCPOG00000030933) #31	GLCCI1 (ENSCPOG00000037962) #32	ICA1 (ENSCPOG00000021862) #33	NXPH1 (ENSCPOG00000006994)	NDUFA4 (ENSCPOG00000036788)	PHF14 (ENSCPOG00000002218)	ENSCPOG00000040423	THSD7A (ENSCPOG00000000279)	TMEM106B (ENSCPOG00000038943)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Eurasian red squirrel	MODERN SPECIES	17	PEG10 (ENSSVLG00005007575) #8	ENSSVLG00005007534	ENSSVLG00005007478	PPP1R9A (ENSSVLG00005007147) #9	PON1 (ENSSVLG00005006959) #10	PON3 (ENSSVLG00005006880) #11	ENSSVLG00005006855	PON2 (ENSSVLG00005006826) #12	ASB4 (ENSSVLG00005006747) #13	PDK4 (ENSSVLG00005006655) #14	DYNC1I1 (ENSSVLG00005006176) #15	SLC25A13 (ENSSVLG00005005915) #16	SEM1 (ENSSVLG00005005837)	DLX6 (ENSSVLG00005005785) #20	DLX5 (ENSSVLG00005005760) #21	SDHAF3 (ENSSVLG00005005726) #22	ENSSVLG00005005692	TAC1 (ENSSVLG00005005619) #24	ASNS (ENSSVLG00005005522) #25	ENSSVLG00005005474 #27	COL28A1 (ENSSVLG00005005316) #28	MIOS (ENSSVLG00005005256) #29	ENSSVLG00005005197 #30	UMAD1 (ENSSVLG00005005159) #31	GLCCI1 (ENSSVLG00005005120) #32	ICA1 (ENSSVLG00005005008) #33	NXPH1 (ENSSVLG00005004963)	ENSSVLG00005004936	ENSSVLG00005004917	PHF14 (ENSSVLG00005004805)	THSD7A (ENSSVLG00005004648)
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000163868
Alpin marmot	MODERN SPECIES	22	PPP1R9A (ENSMMMG00000012538) #9	ENSMMMG00000012971 #8	SGCE (ENSMMMG00000012980) #7	CASD1 (ENSMMMG00000013107)	COL1A2 (ENSMMMG00000013132)	BET1 (ENSMMMG00000013215)	ASB4 (ENSMMMG00000013230) #13	PDK4 (ENSMMMG00000013241) #14	DYNC1I1 (ENSMMMG00000013269) #15	SLC25A13 (ENSMMMG00000013399) #16	SEM1 (ENSMMMG00000013480)	ENSMMMG00000013494	DLX6 (ENSMMMG00000013501) #20	DLX5 (ENSMMMG00000013512) #21	ENSMMMG00000013521	SDHAF3 (ENSMMMG00000013528) #22	TAC1 (ENSMMMG00000013539) #24	ASNS (ENSMMMG00000013577) #25	C1GALT1 (ENSMMMG00000013591) #27	COL28A1 (ENSMMMG00000013600) #28	ENSMMMG00000013638	MIOS (ENSMMMG00000013649) #29	RPA3 (ENSMMMG00000013664) #30	UMAD1 (ENSMMMG00000013672) #31	GLCCI1 (ENSMMMG00000013684) #32	ICA1 (ENSMMMG00000013715) #33	NXPH1 (ENSMMMG00000013827)	NDUFA4 (ENSMMMG00000013836)	PHF14 (ENSMMMG00000013854)	THSD7A (ENSMMMG00000013947)	TMEM106B (ENSMMMG00000014045)
Marmotini_b	ANCESTRAL SPECIES	66	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000009212.i.a.a	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00510000047602.k.c	ENSGT00940000158360
Arctic ground squirrel	MODERN SPECIES	91	CASD1 (ENSUPAG00010014912)	SGCE (ENSUPAG00010014956) #7	ENSUPAG00010015260 #8	PPP1R9A (ENSUPAG00010015293) #9	PON1 (ENSUPAG00010018258) #10	PON3 (ENSUPAG00010018287) #11	PON2 (ENSUPAG00010018303) #12	ASB4 (ENSUPAG00010018314) #13	PDK4 (ENSUPAG00010018316) #14	DYNC1I1 (ENSUPAG00010018338) #15	SLC25A13 (ENSUPAG00010018426) #16	SEM1 (ENSUPAG00010018488)	DLX6 (ENSUPAG00010018504) #20	DLX5 (ENSUPAG00010018520) #21	ENSUPAG00010018528	SDHAF3 (ENSUPAG00010018532) #22	TAC1 (ENSUPAG00010018539) #24	ASNS (ENSUPAG00010018582) #25	C1GALT1 (ENSUPAG00010018594) #27	COL28A1 (ENSUPAG00010018619) #28	ENSUPAG00010018666	MIOS (ENSUPAG00010018670) #29	RPA3 (ENSUPAG00010018685) #30	UMAD1 (ENSUPAG00010018691) #31	GLCCI1 (ENSUPAG00010018705) #32	ICA1 (ENSUPAG00010018725) #33
Squirrel	MODERN SPECIES	185	PEG10 (ENSSTOG00000022801) #8	ENSSTOG00000026064	ENSSTOG00000030680 #9	ENSSTOG00000029077 #9	PON1 (ENSSTOG00000011900) #10	PON3 (ENSSTOG00000025896) #11	PON2 (ENSSTOG00000011912) #12	ASB4 (ENSSTOG00000026077) #13	Pdk4 (ENSSTOG00000021060) #14	DYNC1I1 (ENSSTOG00000008078) #15	SLC25A13 (ENSSTOG00000008106) #16	SEM1 (ENSSTOG00000011501)	DLX6 (ENSSTOG00000020785) #20	DLX5 (ENSSTOG00000005162) #21	ENSSTOG00000034315	ENSSTOG00000034550 #22	TAC1 (ENSSTOG00000005410) #24	ASNS (ENSSTOG00000005421) #25	C1GALT1 (ENSSTOG00000028307) #27	COL28A1 (ENSSTOG00000023884) #28	MIOS (ENSSTOG00000014620) #29	RPA3 (ENSSTOG00000031875) #30	UMAD1 (ENSSTOG00000034216) #31	GLCCI1 (ENSSTOG00000021063) #32	ICA1 (ENSSTOG00000004278) #33	NXPH1 (ENSSTOG00000024868)
Laurasiatheria	ANCESTRAL SPECIES	22	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Hedgehog	MODERN SPECIES	8118																SDHAF3 (ENSEEUG00000007194) #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000154268.e.b	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000153311.a.b.a.j.a.a	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a.w.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000153311.a.b.a.j.a.a	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00390000003721.d.b.h	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a.w.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000153524.b.a.a
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Narwhal	MODERN SPECIES	306	CASD1 (ENSMMNG00015008247)	SGCE (ENSMMNG00015008053) #7	PEG10 (ENSMMNG00015007902) #8	PPP1R9A (ENSMMNG00015007826) #9	PON1 (ENSMMNG00015007758) #10	PON3 (ENSMMNG00015007714) #11	PON2 (ENSMMNG00015007666) #12	ASB4 (ENSMMNG00015007631) #13	PDK4 (ENSMMNG00015007590) #14	DYNC1I1 (ENSMMNG00015007501) #15	SLC25A13 (ENSMMNG00015007438) #16	SEM1 (ENSMMNG00015007402)	ENSMMNG00015007364 #19	DLX6 (ENSMMNG00015007350) #20	DLX5 (ENSMMNG00015007328) #21	SDHAF3 (ENSMMNG00015007315) #22	ENSMMNG00015007300	TAC1 (ENSMMNG00015007275) #24	ASNS (ENSMMNG00015007216) #25	C1GALT1 (ENSMMNG00015007175) #27	MIOS (ENSMMNG00015007154) #29	ENSMMNG00015007125	ENSMMNG00015007099	UMAD1 (ENSMMNG00015007081) #31	GLCCI1 (ENSMMNG00015007056) #32	ICA1 (ENSMMNG00015006974) #33	NXPH1 (ENSMMNG00015006936)	ENSMMNG00015006925	PHF14 (ENSMMNG00015006883)	ENSMMNG00015006863	THSD7A (ENSMMNG00015006836)
Sperm whale	MODERN SPECIES	16	CASD1 (ENSPCTG00005003283)	ENSPCTG00005003307	SGCE (ENSPCTG00005003355) #7	ENSPCTG00005003606 #8	PPP1R9A (ENSPCTG00005003688) #9	PON3 (ENSPCTG00005003894) #11	PON2 (ENSPCTG00005003915) #12	ASB4 (ENSPCTG00005003933) #13	PDK4 (ENSPCTG00005003949) #14	DYNC1I1 (ENSPCTG00005003996) #15	SLC25A13 (ENSPCTG00005004115) #16	SEM1 (ENSPCTG00005004135)	ENSPCTG00005004168 #19	DLX6 (ENSPCTG00005004174) #20	DLX5 (ENSPCTG00005004189) #21	SDHAF3 (ENSPCTG00005004214) #22	TAC1 (ENSPCTG00005004242) #24	ASNS (ENSPCTG00005004342) #25	C1GALT1 (ENSPCTG00005004436) #27	MIOS (ENSPCTG00005004472) #29	RPA3 (ENSPCTG00005004499) #30	UMAD1 (ENSPCTG00005004533) #31	ENSPCTG00005000222	GLCCI1 (ENSPCTG00005000236) #32	ICA1 (ENSPCTG00005000295) #33	NXPH1 (ENSPCTG00005000346)	NDUFA4 (ENSPCTG00005000370)	PHF14 (ENSPCTG00005000457)	THSD7A (ENSPCTG00005000630)	ENSPCTG00005000703	TMEM106B (ENSPCTG00005000721)
Blue whale	MODERN SPECIES	20	SGCE (ENSBMSG00010009381) #7	PPP1R9A (ENSBMSG00010009585) #9	PON1 (ENSBMSG00010009764) #10	PON3 (ENSBMSG00010009875) #11	PON2 (ENSBMSG00010009896) #12	ASB4 (ENSBMSG00010009914) #13	PDK4 (ENSBMSG00010009933) #14	DYNC1I1 (ENSBMSG00010009995) #15	SLC25A13 (ENSBMSG00010010204) #16	ENSBMSG00010010215	ENSBMSG00010010225	SEM1 (ENSBMSG00010010239)	ENSBMSG00010010264 #19	DLX6 (ENSBMSG00010010273) #20	DLX5 (ENSBMSG00010010283) #21	SDHAF3 (ENSBMSG00010010295) #22	ENSBMSG00010010303	TAC1 (ENSBMSG00010010326) #24	ASNS (ENSBMSG00010010358) #25	C1GALT1 (ENSBMSG00010010380) #27	MIOS (ENSBMSG00010010390) #29	RPA3 (ENSBMSG00010010396) #30	UMAD1 (ENSBMSG00010010406) #31	ENSBMSG00010010413	GLCCI1 (ENSBMSG00010010429) #32	ICA1 (ENSBMSG00010010462) #33	NXPH1 (ENSBMSG00010010502)	ENSBMSG00010010516	ENSBMSG00010010526	PHF14 (ENSBMSG00010010545)	THSD7A (ENSBMSG00010010586)
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000183014.f.a.h.u.a.b	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.b.b.b.b	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Percora_a	DUPLICATION
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029.a #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000183014.f.a.h.u.a.b	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.b.b.b.b	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Bovidae	ANCESTRAL SPECIES	12	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00960000191016	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029.a #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000183014.f.a.h.v	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	8	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.c.b.a	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000018085.a.b.a	ENSGT00940000162732	ENSGT00960000191016	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029.a.a #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000183014.f.a.h.v	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.b.b.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Bos	ANCESTRAL SPECIES	8	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.c.b.a	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000018085.a.b.a	ENSGT00960000191016	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029.a.a #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000183014.f.a.h.v	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182883.a.b.a	ENSGT00390000015564.s.b	ENSGT00940000154268.e.b.b.a	ENSGT00940000156923
Bos_a	ANCESTRAL SPECIES	62	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.c.b.a	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00390000018085.a.b.a	ENSGT00960000191016	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029.a.a #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182883.a.b.a
Wild yak	MODERN SPECIES	53										SLC25A13 (ENSBMUG00000006662) #16	ENSBMUG00000006606	ENSBMUG00000006601	ENSBMUG00000006570	DLX6 (ENSBMUG00000006563) #20	DLX5 (ENSBMUG00000006551) #21	ENSBMUG00000006548 #22	TAC1 (ENSBMUG00000006537) #24
Domestic yak	MODERN SPECIES	23	ENSBGRG00000009453	ENSBGRG00000009424	PON3 (ENSBGRG00000009298) #11	PON2 (ENSBGRG00000009075) #12	ENSBGRG00000009056	ASB4 (ENSBGRG00000008948) #13	PDK4 (ENSBGRG00000008799) #14	DYNC1I1 (ENSBGRG00000008636) #15	SLC25A13 (ENSBGRG00000008346) #16	ENSBGRG00000008310	ENSBGRG00000008295	ENSBGRG00000008161	ENSBGRG00000008138	DLX6 (ENSBGRG00000008067) #20	DLX5 (ENSBGRG00000008025) #21	ENSBGRG00000007996 #22	ENSBGRG00000007971	TAC1 (ENSBGRG00000007816) #24	ASNS (ENSBGRG00000007541) #25	C1GALT1 (ENSBGRG00000007477) #27	COL28A1 (ENSBGRG00000007346) #28	RPA3 (ENSBGRG00000007219) #30	MIOS (ENSBGRG00000007029) #29	GLCCI1 (ENSBGRG00000006968) #32	ICA1 (ENSBGRG00000006607) #33	ENSBGRG00000004021	NXPH1 (ENSBGRG00000003991)	ENSBGRG00000003982	ENSBGRG00000003955	ENSBGRG00000003919	ENSBGRG00000003880
American bison	MODERN SPECIES	3058	PEG10 (ENSBBBG00000018993) #8	PPP1R9A (ENSBBBG00000019136) #9	PON1 (ENSBBBG00000019206) #10	PON3 (ENSBBBG00000019221) #11	PON2 (ENSBBBG00000019245) #12	ASB4 (ENSBBBG00000004982) #13	ENSBBBG00000004984	PDK4 (ENSBBBG00000019269) #14	DYNC1I1 (ENSBBBG00000019384) #15	SLC25A13 (ENSBBBG00000008948) #16	ENSBBBG00000008660	SEM1 (ENSBBBG00000005233)	ENSBBBG00000019472	DLX6 (ENSBBBG00000005246) #20	DLX5 (ENSBBBG00000009075) #21	SDHAF3 (ENSBBBG00000019488) #22	ENSBBBG00000019491	TAC1 (ENSBBBG00000019522) #24	ASNS (ENSBBBG00000005315) #25	C1GALT1 (ENSBBBG00000019593) #27	COL28A1 (ENSBBBG00000019641) #28	MIOS (ENSBBBG00000019669) #29	RPA3 (ENSBBBG00000019682) #30	UMAD1 (ENSBBBG00000019686) #31	GLCCI1 (ENSBBBG00000019699) #32	ICA1 (ENSBBBG00000005347) #33	NXPH1 (ENSBBBG00000019763)
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000010029.a.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000010029.a.b #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00390000010029.a.b #22
Domestic yak	MODERN SPECIES	12	ENSBGRG00000017010	ZNF606 (ENSBGRG00000016899)	C19orf18 (ENSBGRG00000016823)	ENSBGRG00000016789	ENSBGRG00000016690	ENSBGRG00000016613	ENSBGRG00000016551	ENSBGRG00000016523	ENSBGRG00000016438	ENSBGRG00000016379	ENSBGRG00000016364	ENSBGRG00000016345	ENSBGRG00000016326	ENSBGRG00000016303	ENSBGRG00000016160	ENSBGRG00000016139 #22	ENSBGRG00000016035	ENSBGRG00000015967	ENSBGRG00000015921	ENSBGRG00000015870	ENSBGRG00000015851	ENSBGRG00000015710	ENSBGRG00000015559	ENSBGRG00000015507	ENSBGRG00000015478	ENSBGRG00000015377	ENSBGRG00000015335	ENSBGRG00000015310	ENSBGRG00000015264	ENSBGRG00000015242	ENSBGRG00000015209
Caprinae	ANCESTRAL SPECIES	10	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00960000191016	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029.a #22	ENSGT00390000002457 #24	ENSGT00390000001994.q #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.a #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000183014.f.a.h.v	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.b.b.a.b	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Rambouillet Sheep	MODERN SPECIES	20	SGCE (ENSOARG00020018567) #7	PEG10 (ENSOARG00020020122) #8	ENSOARG00020020193	PPP1R9A (ENSOARG00020020218) #9	PON1 (ENSOARG00020020677) #10	PON3 (ENSOARG00020020726) #11	PON2 (ENSOARG00020020867) #12	ASB4 (ENSOARG00020021059) #13	PDK4 (ENSOARG00020021170) #14	DYNC1I1 (ENSOARG00020021331) #15	SLC25A13 (ENSOARG00020021619) #16	SEM1 (ENSOARG00020021699)	ENSOARG00020021764	DLX6 (ENSOARG00020021810) #20	DLX5 (ENSOARG00020021833) #21	SDHAF3 (ENSOARG00020000120) #22	TAC1 (ENSOARG00020000198) #24	ASNS (ENSOARG00020000318) #25	C1GALT1 (ENSOARG00020000380) #27	COL28A1 (ENSOARG00020000523) #28	MIOS (ENSOARG00020000878) #29	ENSOARG00020000903 #30	UMAD1 (ENSOARG00020000913) #31	GLCCI1 (ENSOARG00020000930) #32	ICA1 (ENSOARG00020001005) #33	ENSOARG00020001186	NXPH1 (ENSOARG00020001196)	ENSOARG00020001210	NDUFA4 (ENSOARG00020001248)	PHF14 (ENSOARG00020001319)	THSD7A (ENSOARG00020001568)
Siberian musk deer	MODERN SPECIES	346												ACMSD (ENSMMSG00000022603)	CCNT2 (ENSMMSG00000022579)	MAP3K19 (ENSMMSG00000022186)	RAB3GAP1 (ENSMMSG00000021868)	ENSMMSG00000021832 #22	ZRANB3 (ENSMMSG00000021800)	R3HDM1 (ENSMMSG00000020848)	UBXN4 (ENSMMSG00000020749)	LCT (ENSMMSG00000020663)	MCM6 (ENSMMSG00000020619)	DARS1 (ENSMMSG00000020589)	CXCR4 (ENSMMSG00000020562)	THSD7B (ENSMMSG00000020400)	ENSMMSG00000020372	HNMT (ENSMMSG00000020352)	SPOPL (ENSMMSG00000020288)	NXPH2 (ENSMMSG00000020261)	ENSMMSG00000020252	ENSMMSG00000020234	ENSMMSG00000020212
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000010029.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000010029.b #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000010029.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000010029.b #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00390000010029.b #22
Wild yak	MODERN SPECIES	2492																ENSBMUG00000015271 #22	ENSBMUG00000015206
Siberian musk deer	MODERN SPECIES	1158	COL1A2 (ENSMMSG00000018614)	CASD1 (ENSMMSG00000018464)	SGCE (ENSMMSG00000017770) #7	ENSMMSG00000017702 #8	PPP1R9A (ENSMMSG00000017055) #9	PON1 (ENSMMSG00000016965) #10	PON3 (ENSMMSG00000016879) #11	PON2 (ENSMMSG00000016826) #12	ASB4 (ENSMMSG00000016724) #13	PDK4 (ENSMMSG00000016674) #14	DYNC1I1 (ENSMMSG00000015838) #15	SLC25A13 (ENSMMSG00000015776) #16	SEM1 (ENSMMSG00000015729)	ENSMMSG00000015706 #20	DLX5 (ENSMMSG00000015689) #21	ENSMMSG00000015676 #22	ENSMMSG00000015668	ENSMMSG00000015643	TAC1 (ENSMMSG00000015513) #24	ASNS (ENSMMSG00000015432) #25	C1GALT1 (ENSMMSG00000015414) #27	COL28A1 (ENSMMSG00000015374) #28	MIOS (ENSMMSG00000015314) #29	RPA3 (ENSMMSG00000015284) #30	UMAD1 (ENSMMSG00000015274) #31	GLCCI1 (ENSMMSG00000015242) #32	ICA1 (ENSMMSG00000015191) #33	ENSMMSG00000015176	NXPH1 (ENSMMSG00000015158)	ENSMMSG00000015146	ENSMMSG00000015136
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Arabian camel	MODERN SPECIES	33	CASD1 (ENSCDRG00005001307)	SGCE (ENSCDRG00005001555) #7	ENSCDRG00005002362 #8	PPP1R9A (ENSCDRG00005002429) #9	PON1 (ENSCDRG00005002595) #10	PON3 (ENSCDRG00005002624) #11	PON2 (ENSCDRG00005002647) #12	ASB4 (ENSCDRG00005002691) #13	PDK4 (ENSCDRG00005002723) #14	DYNC1I1 (ENSCDRG00005002752) #15	SLC25A13 (ENSCDRG00005002791) #16	ENSCDRG00005002860 #18	DLX6 (ENSCDRG00005002890) #20	ENSCDRG00005002902	DLX5 (ENSCDRG00005002916) #21	SDHAF3 (ENSCDRG00005002930) #22	TAC1 (ENSCDRG00005002949) #24	ASNS (ENSCDRG00005002993) #25	C1GALT1 (ENSCDRG00005003044) #27	COL28A1 (ENSCDRG00005003074) #28	MIOS (ENSCDRG00005003114) #29	RPA3 (ENSCDRG00005003135) #30	UMAD1 (ENSCDRG00005003150) #31	ENSCDRG00005003161 #32	ICA1 (ENSCDRG00005003204) #33	NXPH1 (ENSCDRG00005003418)	ENSCDRG00005003437	PHF14 (ENSCDRG00005003597)	THSD7A (ENSCDRG00005004035)	TMEM106B (ENSCDRG00005004538)	VWDE (ENSCDRG00005004582)
Suina	ANCESTRAL SPECIES																	ENSGT00390000010029 #22
Chacoan peccary	MODERN SPECIES	101	CASD1 (ENSCWAG00000006679)	SGCE (ENSCWAG00000006293) #7	PEG10 (ENSCWAG00000006194) #8	ENSCWAG00000006173	PPP1R9A (ENSCWAG00000005243) #9	PON1 (ENSCWAG00000005098) #10	PON3 (ENSCWAG00000005028) #11	PON2 (ENSCWAG00000004936) #12	ASB4 (ENSCWAG00000004895) #13	PDK4 (ENSCWAG00000004831) #14	DYNC1I1 (ENSCWAG00000004316) #15	SLC25A13 (ENSCWAG00000004215) #16	SEM1 (ENSCWAG00000004157)	DLX6 (ENSCWAG00000004117) #20	DLX5 (ENSCWAG00000004090) #21	ENSCWAG00000004069 #22	ENSCWAG00000004034	TAC1 (ENSCWAG00000003905) #24	ASNS (ENSCWAG00000003824) #25	C1GALT1 (ENSCWAG00000003792) #27	COL28A1 (ENSCWAG00000003705) #28	MIOS (ENSCWAG00000003656) #29	RPA3 (ENSCWAG00000003646) #30	UMAD1 (ENSCWAG00000003639) #31	GLCCI1 (ENSCWAG00000003628) #32	ICA1 (ENSCWAG00000003594) #33	NXPH1 (ENSCWAG00000003572)	ENSCWAG00000003568	NDUFA4 (ENSCWAG00000003561)	PHF14 (ENSCWAG00000003543)
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Carnivora	ANCESTRAL SPECIES	15	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360
Felidae	ANCESTRAL SPECIES	13	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Tiger	MODERN SPECIES	86	SGCE (ENSPTIG00000003426) #7	ENSPTIG00000020088 #8	PPP1R9A (ENSPTIG00000013264) #9	PON1 (ENSPTIG00000013016) #10	PON3 (ENSPTIG00000010734) #11	PON2 (ENSPTIG00000007995) #12	ASB4 (ENSPTIG00000007277) #13	ENSPTIG00000005690 #14	ENSPTIG00000003162 #15	ENSPTIG00000021023 #15	SLC25A13 (ENSPTIG00000017442) #16	SEM1 (ENSPTIG00000016399)	ENSPTIG00000005830 #19	DLX6 (ENSPTIG00000015917) #20	DLX5 (ENSPTIG00000015406) #21	SDHAF3 (ENSPTIG00000014702) #22	TAC1 (ENSPTIG00000012039) #24	ASNS (ENSPTIG00000010610) #25	C1GALT1 (ENSPTIG00000009676) #27	COL28A1 (ENSPTIG00000003687) #28	MIOS (ENSPTIG00000020989) #29	RPA3 (ENSPTIG00000020731) #30	UMAD1 (ENSPTIG00000020441) #31	ENSPTIG00000020014 #32	ICA1 (ENSPTIG00000016701) #33	NXPH1 (ENSPTIG00000016592)	ENSPTIG00000016258	PHF14 (ENSPTIG00000013018)	THSD7A (ENSPTIG00000008613)
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.e.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
lion	MODERN SPECIES	2	SGCE (ENSPLOG00000015060) #7	PEG10 (ENSPLOG00000016403) #8	PPP1R9A (ENSPLOG00000016519) #9	PON1 (ENSPLOG00000016943) #10	PON3 (ENSPLOG00000017038) #11	PON2 (ENSPLOG00000017185) #12	ASB4 (ENSPLOG00000017377) #13	PDK4 (ENSPLOG00000017484) #14	DYNC1I1 (ENSPLOG00000017626) #15	SLC25A13 (ENSPLOG00000018233) #16	SEM1 (ENSPLOG00000018292)	ENSPLOG00000018395 #19	DLX6 (ENSPLOG00000018415) #20	ENSPLOG00000018456	DLX5 (ENSPLOG00000018485) #21	SDHAF3 (ENSPLOG00000018540) #22	TAC1 (ENSPLOG00000018609) #24	ASNS (ENSPLOG00000018770) #25	C1GALT1 (ENSPLOG00000018883) #27	COL28A1 (ENSPLOG00000018923) #28	MIOS (ENSPLOG00000019131) #29	RPA3 (ENSPLOG00000019171) #30	UMAD1 (ENSPLOG00000019213) #31	GLCCI1 (ENSPLOG00000019253) #32	ICA1 (ENSPLOG00000019284) #33	NXPH1 (ENSPLOG00000019464)	ENSPLOG00000019496	ENSPLOG00000019529 ##23	PHF14 (ENSPLOG00000019605)	THSD7A (ENSPLOG00000019788)	TMEM106B (ENSPLOG00000020063)
leopard	MODERN SPECIES	9	SGCE (ENSPPRG00000002186) #7	ENSPPRG00000000292 #8	PPP1R9A (ENSPPRG00000020457) #9	PON1 (ENSPPRG00000009771) #10	PON3 (ENSPPRG00000009646) #11	PON2 (ENSPPRG00000008699) #12	ASB4 (ENSPPRG00000007721) #13	PDK4 (ENSPPRG00000006772) #14	DYNC1I1 (ENSPPRG00000006550) #15	ENSPPRG00000002150	SLC25A13 (ENSPPRG00000001937) #16	SEM1 (ENSPPRG00000000502)	ENSPPRG00000015965 #19	DLX6 (ENSPPRG00000022762) #20	DLX5 (ENSPPRG00000023013) #21	SDHAF3 (ENSPPRG00000023385) #22	ENSPPRG00000020877	TAC1 (ENSPPRG00000019181) #24	ASNS (ENSPPRG00000018642) #25	C1GALT1 (ENSPPRG00000014040) #27	COL28A1 (ENSPPRG00000013113) #28	MIOS (ENSPPRG00000012147) #29	RPA3 (ENSPPRG00000011518) #30	UMAD1 (ENSPPRG00000011362) #31	GLCCI1 (ENSPPRG00000010852) #32	ICA1 (ENSPPRG00000010134) #33	NXPH1 (ENSPPRG00000005930)	ENSPPRG00000005600	PHF14 (ENSPPRG00000005010)	THSD7A (ENSPPRG00000003281)	ENSPPRG00000000847
Cat	MODERN SPECIES	1	PEG10 (ENSFCAG00000041002) #8	PPP1R9A (ENSFCAG00000011043) #9	PON1 (ENSFCAG00000019028) #10	PON3 (ENSFCAG00000008297) #11	PON2 (ENSFCAG00000031767) #12	ASB4 (ENSFCAG00000009993) #13	PDK4 (ENSFCAG00000028642) #14	DYNC1I1 (ENSFCAG00000011808) #15	SLC25A13 (ENSFCAG00000011810) #16	ENSFCAG00000051628	SEM1 (ENSFCAG00000037589)	ENSFCAG00000037742 #19	DLX6 (ENSFCAG00000026168) #20	ENSFCAG00000033780	DLX5 (ENSFCAG00000045842) #21	SDHAF3 (ENSFCAG00000023112) #22	TAC1 (ENSFCAG00000027120) #24	ASNS (ENSFCAG00000022830) #25	C1GALT1 (ENSFCAG00000029442) #27	COL28A1 (ENSFCAG00000018957) #28	MIOS (ENSFCAG00000012070) #29	RPA3 (ENSFCAG00000037352) #30	UMAD1 (ENSFCAG00000039038) #31	GLCCI1 (ENSFCAG00000044916) #32	ICA1 (ENSFCAG00000013009) #33	NXPH1 (ENSFCAG00000006670)	ENSFCAG00000039840	PHF14 (ENSFCAG00000032020)	THSD7A (ENSFCAG00000012989)	TMEM106B (ENSFCAG00000045115)	VWDE (ENSFCAG00000024923)
Caniformia	ANCESTRAL SPECIES	11	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Ursidae	ANCESTRAL SPECIES	12	ENSGT00950000183173.P #8	ENSGT00940000155398.dc.a	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Ursus	ANCESTRAL SPECIES	54	ENSGT00950000183173.P #8	ENSGT00940000155398.dc.a	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30
American black bear	MODERN SPECIES	5420																SDHAF3 (ENSUAMG00000022428) #22
Polar bear	MODERN SPECIES	132	PEG10 (ENSUMAG00000021102) #8	ENSUMAG00000021109	PPP1R9A (ENSUMAG00000021167) #9	PON1 (ENSUMAG00000021412) #10	PON3 (ENSUMAG00000021419) #11	PON2 (ENSUMAG00000021432) #12	ASB4 (ENSUMAG00000021464) #13	PDK4 (ENSUMAG00000021470) #14	DYNC1I1 (ENSUMAG00000021477) #15	SLC25A13 (ENSUMAG00000021484) #16	SEM1 (ENSUMAG00000021491)	ENSUMAG00000021506 #19	DLX6 (ENSUMAG00000021509) #20	ENSUMAG00000021511	DLX5 (ENSUMAG00000021517) #21	SDHAF3 (ENSUMAG00000021523) #22	TAC1 (ENSUMAG00000021530) #24	ASNS (ENSUMAG00000021541) #25	C1GALT1 (ENSUMAG00000021545) #27	COL28A1 (ENSUMAG00000021547) #28	MIOS (ENSUMAG00000021553) #29	ENSUMAG00000021556 #30
Giant Panda	MODERN SPECIES		SGCE (ENSAMEG00000017461) #7	PEG10 (ENSAMEG00000019304) #8	ENSAMEG00000028570	PPP1R9A (ENSAMEG00000025027) #9	PON1 (ENSAMEG00000010218) #10	PON3 (ENSAMEG00000010256) #11	PON2 (ENSAMEG00000010274) #12	ASB4 (ENSAMEG00000010301) #13	PDK4 (ENSAMEG00000010313) #14	DYNC1I1 (ENSAMEG00000010340) #15	SLC25A13 (ENSAMEG00000010393) #16	SEM1 (ENSAMEG00000010434)	DLX6 (ENSAMEG00000030077) #20	ENSAMEG00000023534	DLX5 (ENSAMEG00000025315) #21	SDHAF3 (ENSAMEG00000005591) #22	TAC1 (ENSAMEG00000016330) #24	ENSAMEG00000016335 #25	ENSAMEG00000016360 #27	ENSAMEG00000016366 #28	MIOS (ENSAMEG00000016383) #29	RPA3 (ENSAMEG00000016401) #30	ICA1 (ENSAMEG00000016413) #33	NXPH1 (ENSAMEG00000014288)	NDUFA4 (ENSAMEG00000002493)	PHF14 (ENSAMEG00000002497)	THSD7A (ENSAMEG00000010568)	TMEM106B (ENSAMEG00000009789)	VWDE (ENSAMEG00000009806)	ENSAMEG00000019235	ENSAMEG00000027686
Mustelinae	ANCESTRAL SPECIES	46	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a
American mink	MODERN SPECIES	89	CASD1 (ENSNVIG00000018302)	SGCE (ENSNVIG00000018356) #7	PEG10 (ENSNVIG00000019037) #8	PPP1R9A (ENSNVIG00000019078) #9	PON1 (ENSNVIG00000019295) #10	PON3 (ENSNVIG00000019307) #11	PON2 (ENSNVIG00000019351) #12	ASB4 (ENSNVIG00000019375) #13	PDK4 (ENSNVIG00000019382) #14	DYNC1I1 (ENSNVIG00000019409) #15	SLC25A13 (ENSNVIG00000019576) #16	SEM1 (ENSNVIG00000019631)	ENSNVIG00000019656 #19	DLX6 (ENSNVIG00000019667) #20	DLX5 (ENSNVIG00000019679) #21	ACN9 (ENSNVIG00000019698) #22	ENSNVIG00000019703	TAC1 (ENSNVIG00000019710) #24	ASNS (ENSNVIG00000019745) #25	C1GALT1 (ENSNVIG00000019827) #27	ENSNVIG00000019840	COL28A1 (ENSNVIG00000019846) #28	MIO (ENSNVIG00000019915) #29	RFA3 (ENSNVIG00000019956) #30	ENSNVIG00000019979 #31	ENSNVIG00000020014 #32	ICA1 (ENSNVIG00000020027) #33	NXPH1 (ENSNVIG00000020111)
Ferret	MODERN SPECIES	292	BET1 (ENSMPUG00000001630)	COL1A2 (ENSMPUG00000001613)	CASD1 (ENSMPUG00000001604)	SGCE (ENSMPUG00000001594) #7	ENSMPUG00000019410 ##8	PPP1R9A (ENSMPUG00000001584) #9	PON1 (ENSMPUG00000001579) #10	PON3 (ENSMPUG00000001572) #11	PON2 (ENSMPUG00000001566) #12	ASB4 (ENSMPUG00000001561) #13	PDK4 (ENSMPUG00000001556) #14	DYNC1I1 (ENSMPUG00000001547) #15	SLC25A13 (ENSMPUG00000001535) #16	DLX6 (ENSMPUG00000001519) #20	DLX5 (ENSMPUG00000001514) #21	SDHAF3 (ENSMPUG00000001512) #22	TAC1 (ENSMPUG00000001508) #24	ASNS (ENSMPUG00000001501) #25	C1GALT1 (ENSMPUG00000001496) #27	COL28A1 (ENSMPUG00000001484) #28	MIOS (ENSMPUG00000001438) #29	ENSMPUG00000001435 #30	GLCCI1 (ENSMPUG00000001415) #32	ICA1 (ENSMPUG00000001408) #33	NXPH1 (ENSMPUG00000001403)
Canidae	ANCESTRAL SPECIES	22	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835	ENSGT01100000263477.F
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000163409 #18	ENSGT00940000157683 #20	ENSGT00910000147039	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029.c #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000156923	ENSGT00940000155427	ENSGT00950000182987.c.a.a.i.a.b	ENSGT00940000158360.e	ENSGT00940000160835
Dingo	MODERN SPECIES	203	CASD1 (ENSCAFG00020011601)	SGCE (ENSCAFG00020011594) #7	PEG10 (ENSCAFG00020011590) #8	PPP1R9A (ENSCAFG00020011260) #9	PON1 (ENSCAFG00020011240) #10	PON3 (ENSCAFG00020011223) #11	PON2 (ENSCAFG00020011216) #12	PDK4 (ENSCAFG00020011212) #14	ENSCAFG00020011207 #15	ENSCAFG00020011190 #15	ENSCAFG00020011187	ENSCAFG00020010643 #16	DLX6 (ENSCAFG00020010631) #20	ENSCAFG00020010627	DLX5 (ENSCAFG00020010625) #21	SDHAF3 (ENSCAFG00020010615) #22	ENSCAFG00020010609	TAC1 (ENSCAFG00020010587) #24	ASNS (ENSCAFG00020010580) #25	C1GALT1 (ENSCAFG00020010576) #27	ENSCAFG00020010574	ENSCAFG00020010572	MIOS (ENSCAFG00020010551) #29	ENSCAFG00020010550 #30	UMAD1 (ENSCAFG00020010547) #31	GLCCI1 (ENSCAFG00020010535) #32	ICA1 (ENSCAFG00020010319) #33	NXPH1 (ENSCAFG00020010302)	PHF14 (ENSCAFG00020010292)	THSD7A (ENSCAFG00020010234)	ENSCAFG00020010212
Red fox	MODERN SPECIES	48	SGCE (ENSVVUG00000015577) #7	ENSVVUG00000015584 #8	ENSVVUG00000015587 #8	PPP1R9A (ENSVVUG00000015603) #9	PON1 (ENSVVUG00000015624) #10	PON3 (ENSVVUG00000015625) #11	PON2 (ENSVVUG00000015637) #12	ASB4 (ENSVVUG00000015642) #13	PDK4 (ENSVVUG00000015648) #14	DYNC1I1 (ENSVVUG00000015673) #15	SLC25A13 (ENSVVUG00000015715) #16	ENSVVUG00000015747	ENSVVUG00000015757	DLX6 (ENSVVUG00000015777) #20	DLX5 (ENSVVUG00000015813) #21	ENSVVUG00000015821 #22	TAC1 (ENSVVUG00000015838) #24	ENSVVUG00000015848	ASNS (ENSVVUG00000015859) #25	C1GALT1 (ENSVVUG00000015871) #27	COL28A1 (ENSVVUG00000015891) #28	MIOS (ENSVVUG00000015960) #29	ENSVVUG00000015968 #30	ENSVVUG00000015971 #31	ENSVVUG00000015981 #32	ICA1 (ENSVVUG00000015987) #33	NXPH1 (ENSVVUG00000016058)	ENSVVUG00000016064	ENSVVUG00000016084	ENSVVUG00000016088 ##23	PHF14 (ENSVVUG00000016098)
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00910000147396	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Chiroptera	ANCESTRAL SPECIES	24	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Microchiroptera	ANCESTRAL SPECIES	24	ENSGT00390000004037	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Greater horseshoe bat	MODERN SPECIES	12	SGCE (ENSRFEG00010012077) #7	PEG10 (ENSRFEG00010011916) #8	PPP1R9A (ENSRFEG00010011710) #9	PON1 (ENSRFEG00010011514) #10	PON2 (ENSRFEG00010011413) #12	ASB4 (ENSRFEG00010011309) #13	PDK4 (ENSRFEG00010011206) #14	ENSRFEG00010011186	DYNC1I1 (ENSRFEG00010010978) #15	SLC25A13 (ENSRFEG00010010892) #16	ENSRFEG00010010866	ENSRFEG00010010788	ENSRFEG00010010760 #19	DLX6 (ENSRFEG00010010699) #20	DLX5 (ENSRFEG00010010599) #21	SDHAF3 (ENSRFEG00010010477) #22	ENSRFEG00010019020	TAC1 (ENSRFEG00010018939) #24	ASNS (ENSRFEG00010018859) #25	ENSRFEG00010018832	C1GALT1 (ENSRFEG00010018762) #27	COL28A1 (ENSRFEG00010018733) #28	MIOS (ENSRFEG00010018659) #29	RPA3 (ENSRFEG00010018600) #30	UMAD1 (ENSRFEG00010018549) #31	GLCCI1 (ENSRFEG00010018508) #32	ICA1 (ENSRFEG00010018424) #33	NXPH1 (ENSRFEG00010018380)	ENSRFEG00010018342	PHF14 (ENSRFEG00010018214)	THSD7A (ENSRFEG00010018151)
Microbat	MODERN SPECIES	952	ENSMLUG00000028366	COL1A2 (ENSMLUG00000015487)	CASD1 (ENSMLUG00000016713)	SGCE (ENSMLUG00000016724) #7	PPP1R9A (ENSMLUG00000014166) #9	PON1 (ENSMLUG00000014176) #10	PON3 (ENSMLUG00000006984) #11	PON2 (ENSMLUG00000006998) #12	ASB4 (ENSMLUG00000007018) #13	PDK4 (ENSMLUG00000007027) #14	DYNC1I1 (ENSMLUG00000013664) #15	SLC25A13 (ENSMLUG00000013686) #16	SEM1 (ENSMLUG00000014208)	DLX6 (ENSMLUG00000016909) #20	DLX5 (ENSMLUG00000028784) #21	SDHAF3 (ENSMLUG00000016914) #22	TAC1 (ENSMLUG00000002327) #24	ASNS (ENSMLUG00000006832) #25	C1GALT1 (ENSMLUG00000014789) #27	COL28A1 (ENSMLUG00000030093) #28	MIOS (ENSMLUG00000007258) #29	RPA3 (ENSMLUG00000007421) #30	GLCCI1 (ENSMLUG00000016797) #32	ICA1 (ENSMLUG00000016801) #33	NXPH1 (ENSMLUG00000003339)	NDUFA4 (ENSMLUG00000006470)	PHF14 (ENSMLUG00000010669)	THSD7A (ENSMLUG00000007494)	TMEM106B (ENSMLUG00000003287)	ENSMLUG00000024334	SCIN (ENSMLUG00000009565)
Megabat	MODERN SPECIES	2664														DLX6 (ENSPVAG00000004462) #20	DLX5 (ENSPVAG00000004470) #21	SDHAF3 (ENSPVAG00000004474) #22
Equus	ANCESTRAL SPECIES	13	ENSGT00910000147396	ENSGT00390000005672.a.b #7	ENSGT00950000183173.P #8	ENSGT00940000155538 #9	ENSGT00390000008932.c.a.b #10	ENSGT00390000008932.c.b #11	ENSGT00390000008932.c.a.a #12	ENSGT00940000158874 #13	ENSGT01030000234646.B.a.a.a.b #14	ENSGT00940000156032 #15	ENSGT00940000159344 #16	ENSGT00940000162732	ENSGT00910000146930 #19	ENSGT00940000157683 #20	ENSGT00940000159188 #21	ENSGT00390000010029 #22	ENSGT00390000002457 #24	ENSGT00390000001994 #25	ENSGT00940000155000 #27	ENSGT00940000161647 #28	ENSGT00390000015038 #29	ENSGT00390000008029 #30	ENSGT00390000003051 #31	ENSGT00950000183046.b #32	ENSGT00390000005530.a.b #33	ENSGT00950000182883.a.b.a	ENSGT00940000154268.f	ENSGT00940000156923	ENSGT00940000155427	ENSGT00940000158360	ENSGT00940000160835
Donkey	DUPLICATION
Donkey	MODERN SPECIES	11														ENSEASG00005020536	SHANK3 (ENSEASG00005020539)	ENSEASG00005020547 #22	ARSA (ENSEASG00005020551)	MAPK8IP2 (ENSEASG00005020553)	CHKB (ENSEASG00005020558)	CPT1B (ENSEASG00005020564)	ODF3B (ENSEASG00005020573)	TYMP (ENSEASG00005020577)	SCO2 (ENSEASG00005024802)	NCAPH2 (ENSEASG00005020581)	LMF2 (ENSEASG00005020586)	MIOX (ENSEASG00005020592)	ADM2 (ENSEASG00005027186)	SBF1 (ENSEASG00005020636)	PPP6R2 (ENSEASG00005020813)	DENND6B (ENSEASG00005020818)	PLXNB2 (ENSEASG00005020988)
Donkey	MODERN SPECIES		SGCE (ENSEASG00005020815) #7	PEG10 (ENSEASG00005020829) #8	PPP1R9A (ENSEASG00005020843) #9	PON1 (ENSEASG00005020870) #10	PON3 (ENSEASG00005020888) #11	ENSEASG00005028182	PON2 (ENSEASG00005020892) #12	ASB4 (ENSEASG00005020898) #13	PDK4 (ENSEASG00005020903) #14	DYNC1I1 (ENSEASG00005020909) #15	SLC25A13 (ENSEASG00005020923) #16	SEM1 (ENSEASG00005037776)	ENSEASG00005020938 #19	DLX6 (ENSEASG00005020943) #20	DLX5 (ENSEASG00005020950) #21	ENSEASG00005020955 #22	ENSEASG00005024327	ENSEASG00005020961	ENSEASG00005032200 #24	ENSEASG00005020972 #25	ENSEASG00005020977	ENSEASG00005027814 #27	COL28A1 (ENSEASG00005021002) #28	MIOS (ENSEASG00005021021) #29	RPA3 (ENSEASG00005030958) #30	UMAD1 (ENSEASG00005032980) #31	GLCCI1 (ENSEASG00005021039) #32	ICA1 (ENSEASG00005021047) #33	NXPH1 (ENSEASG00005027831)	ENSEASG00005031867	ENSEASG00005026321
Horse	DUPLICATION
Horse	MODERN SPECIES	20														ACR (ENSECAG00000013888)	SHANK3 (ENSECAG00000011905)	ENSECAG00000011685 #22	ARSA (ENSECAG00000020104)	MAPK8IP2 (ENSECAG00000017304)	CHKB (ENSECAG00000013600)	CPT1B (ENSECAG00000012793)	KLHDC7B (ENSECAG00000001641)	ODF3B (ENSECAG00000010296)	TYMP (ENSECAG00000001072)	SCO2 (ENSECAG00000001560)	NCAPH2 (ENSECAG00000019018)	LMF2 (ENSECAG00000008435)	MIOX (ENSECAG00000020700)	SBF1 (ENSECAG00000022103)	PPP6R2 (ENSECAG00000007827)	DENND6B (ENSECAG00000013516)	PLXNB2 (ENSECAG00000019242)
Horse	MODERN SPECIES	25	ENSECAG00000050540	SGCE (ENSECAG00000020155) #7	PEG10 (ENSECAG00000001603) #8	PPP1R9A (ENSECAG00000015961) #9	PON1 (ENSECAG00000000344) #10	PON3 (ENSECAG00000009974) #11	PON2 (ENSECAG00000010414) #12	ASB4 (ENSECAG00000022256) #13	PDK4 (ENSECAG00000008335) #14	DYNC1I1 (ENSECAG00000014203) #15	SLC25A13 (ENSECAG00000013738) #16	SEM1 (ENSECAG00000043120)	ENSECAG00000057784	DLX6 (ENSECAG00000019084) #20	DLX5 (ENSECAG00000019565) #21	SDHAF3 (ENSECAG00000000424) #22	TAC1 (ENSECAG00000002538) #24	ASNS (ENSECAG00000012134) #25	ENSECAG00000029294	C1GALT1 (ENSECAG00000013002) #27	COL28A1 (ENSECAG00000013598) #28	MIOS (ENSECAG00000021834) #29	ENSECAG00000046902	RPA3 (ENSECAG00000054203) #30	UMAD1 (ENSECAG00000040063) #31	ENSECAG00000056496	ENSECAG00000052905	GLCCI1 (ENSECAG00000009379) #32	ICA1 (ENSECAG00000011651) #33	NXPH1 (ENSECAG00000037686)	ENSECAG00000026987