Tetrapoda	ANCESTRAL SPECIES	21				ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152 #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Amniota	ANCESTRAL SPECIES	14	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Mammalia	ANCESTRAL SPECIES	12	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000172404	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Theria	ANCESTRAL SPECIES	9	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000172404	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Eutheria	ANCESTRAL SPECIES	4	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159720	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Primates	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00390000007843.v ##11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Cebidae	ANCESTRAL SPECIES	10	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154172.gb.b.b.b #26	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Marmoset	MODERN SPECIES	17	B4GALNT2 (ENSCJAG00000007247) #7	ENSCJAG00000079002 #8	IGF2BP1 (ENSCJAG00000007258) #9	GIP (ENSCJAG00000007300) #10	SNF8 (ENSCJAG00000007322) #11	UBE2Z (ENSCJAG00000007326) #12	ATP5MC1 (ENSCJAG00000075375) #13	CALCOCO2 (ENSCJAG00000007375) #14	TTLL6 (ENSCJAG00000007395) #15	HOXB13 (ENSCJAG00000007437) #16	HOXB9 (ENSCJAG00000007442) #17	HOXB8 (ENSCJAG00000045730) #18	HOXB7 (ENSCJAG00000007457) #19	HOXB6 (ENSCJAG00000007467) #20	HOXB5 (ENSCJAG00000007472) #21	HOXB4 (ENSCJAG00000007480) #22	HOXB3 (ENSCJAG00000007487) #23	HOXB2 (ENSCJAG00000007494) #24	HOXB1 (ENSCJAG00000007496) #25	ENSCJAG00000038853 #26	SKAP1 (ENSCJAG00000007504) #27	SNX11 (ENSCJAG00000039549) #28	CBX1 (ENSCJAG00000042052) #29	NFE2L1 (ENSCJAG00000007542) #30	ENSCJAG00000058197 #31	COPZ2 (ENSCJAG00000007567) #32	CDK5RAP3 (ENSCJAG00000007669) #33	PRR15L (ENSCJAG00000044487) #34	PNPO (ENSCJAG00000007693) #35	SP2 (ENSCJAG00000007713) #36	SP6 (ENSCJAG00000043946) #37
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a.t.b #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT01050000247531	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154172.gb.b.b.b #26	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Bolivian squirrel monkey	MODERN SPECIES	86	GIP (ENSSBOG00000020793) #10	SNF8 (ENSSBOG00000026186) #11	ENSSBOG00000028176	UBE2Z (ENSSBOG00000036224) #12	ENSSBOG00000028794	CALCOCO2 (ENSSBOG00000035276) #14	TTLL6 (ENSSBOG00000028908) #15	HOXB13 (ENSSBOG00000029964) #16	PRAC2 (ENSSBOG00000032603)	ENSSBOG00000030794	HOXB9 (ENSSBOG00000030218) #17	HOXB8 (ENSSBOG00000034884) #18	HOXB7 (ENSSBOG00000020028) #19	HOXB6 (ENSSBOG00000031900) #20	HOXB5 (ENSSBOG00000018198) #21	HOXB4 (ENSSBOG00000024432) #22	HOXB3 (ENSSBOG00000030844) #23	HOXB2 (ENSSBOG00000025070) #24	HOXB1 (ENSSBOG00000034875) #25	ENSSBOG00000019520 ##26	SKAP1 (ENSSBOG00000029434) #27	SNX11 (ENSSBOG00000026967) #28	ENSSBOG00000031880 ##29	NFE2L1 (ENSSBOG00000023867) #30	COPZ2 (ENSSBOG00000033633) #32	CDK5RAP3 (ENSSBOG00000033272) #33	PRR15L (ENSSBOG00000019240) #34	PNPO (ENSSBOG00000021213) #35	SP2 (ENSSBOG00000029098) #36	SP6 (ENSSBOG00000014210) #37	SCRN2 (ENSSBOG00000027391)
Capuchin	MODERN SPECIES	228								HOXB13 (ENSCCAG00000036871) #16	ENSCCAG00000036164	ENSCCAG00000019672	HOXB7 (ENSCCAG00000023947) #19	HOXB9 (ENSCCAG00000035938) #17	HOXB8 (ENSCCAG00000026051) #18	HOXB6 (ENSCCAG00000022842) #20	HOXB5 (ENSCCAG00000036867) #21	HOXB4 (ENSCCAG00000020311) #22	HOXB3 (ENSCCAG00000013598) #23	HOXB2 (ENSCCAG00000024035) #24	HOXB1 (ENSCCAG00000027667) #25	ENSCCAG00000019181 #26	SKAP1 (ENSCCAG00000035663) #27	SNX11 (ENSCCAG00000030167) #28	CBX1 (ENSCCAG00000025085) #29	NFE2L1 (ENSCCAG00000029090) #30	COPZ2 (ENSCCAG00000021292) #32	CDK5RAP3 (ENSCCAG00000038053) #33	PNPO (ENSCCAG00000029175) #35	SP2 (ENSCCAG00000038047) #36	SP6 (ENSCCAG00000020330) #37	SCRN2 (ENSCCAG00000031435)	LRRC46 (ENSCCAG00000030568)
Mas night monkey	MODERN SPECIES	481	IGF2BP1 (ENSANAG00000022606) #9	GIP (ENSANAG00000030188) #10	SNF8 (ENSANAG00000032764) #11	UBE2Z (ENSANAG00000029636) #12	ATP5MC1 (ENSANAG00000024881) #13	ENSANAG00000020581 #14	TTLL6 (ENSANAG00000031133) #15	PRAC2 (ENSANAG00000025557)	HOXB13 (ENSANAG00000023991) #16	ENSANAG00000030331	HOXB9 (ENSANAG00000035156) #17	HOXB8 (ENSANAG00000028346) #18	HOXB7 (ENSANAG00000025513) #19	HOXB6 (ENSANAG00000023964) #20	HOXB5 (ENSANAG00000024299) #21	HOXB4 (ENSANAG00000024005) #22	HOXB3 (ENSANAG00000032072) #23	HOXB2 (ENSANAG00000023626) #24	HOXB1 (ENSANAG00000032306) #25	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #27	SNX11 (ENSANAG00000022588) #28	ENSANAG00000036853 ##29	NFE2L1 (ENSANAG00000027606) #30	COPZ2 (ENSANAG00000023309) #32	CDK5RAP3 (ENSANAG00000021880) #33	PNPO (ENSANAG00000026080) #35	SP2 (ENSANAG00000032738) #36	SP6 (ENSANAG00000019338) #37	SCRN2 (ENSANAG00000021482)	LRRC46 (ENSANAG00000028496)
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00390000007843.v ##11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713.h.b #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713.h.a #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713.h.a.a.b #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713.h.a.a.b #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Pan	ANCESTRAL SPECIES	3	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713.h.a.a.b #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Chimpanzee	MODERN SPECIES	8	GIP (ENSPTRG00000009367) #10	SNF8 (ENSPTRG00000051067) #11	UBE2Z (ENSPTRG00000009365) #12	ENSPTRG00000051053	ATP5MC1 (ENSPTRG00000009364) #13	CALCOCO2 (ENSPTRG00000009363) #14	TTLL6 (ENSPTRG00000009361) #15	HOXB13 (ENSPTRG00000009360) #16	PRAC2 (ENSPTRG00000048455)	PRAC1 (ENSPTRG00000009359)	HOXB9 (ENSPTRG00000009358) #17	HOXB8 (ENSPTRG00000048497) #18	HOXB7 (ENSPTRG00000009357) #19	HOXB6 (ENSPTRG00000009356) #20	HOXB5 (ENSPTRG00000009355) #21	HOXB4 (ENSPTRG00000009354) #22	HOXB3 (ENSPTRG00000052423) #23	HOXB2 (ENSPTRG00000009352) #24	HOXB1 (ENSPTRG00000009351) #25	SKAP1 (ENSPTRG00000009350) #27	SNX11 (ENSPTRG00000009349) #28	CBX1 (ENSPTRG00000052115) #29	NFE2L1 (ENSPTRG00000022631) #30	COPZ2 (ENSPTRG00000009346) #32	CDK5RAP3 (ENSPTRG00000009345) #33	PRR15L (ENSPTRG00000047216) #34	PNPO (ENSPTRG00000009343) #35	SP2 (ENSPTRG00000009342) #36	SP6 (ENSPTRG00000009340) #37	SCRN2 (ENSPTRG00000009339)	LRRC46 (ENSPTRG00000009338)
Bonobo	MODERN SPECIES	8	IGF2BP1 (ENSPPAG00000040224) #9	ENSPPAG00000029732	SNF8 (ENSPPAG00000030822) #11	ENSPPAG00000029824	ENSPPAG00000001213 #12	ATP5MC1 (ENSPPAG00000039996) #13	CALCOCO2 (ENSPPAG00000037813) #14	TTLL6 (ENSPPAG00000036197) #15	HOXB13 (ENSPPAG00000027794) #16	PRAC1 (ENSPPAG00000014004)	HOXB9 (ENSPPAG00000028486) #17	HOXB8 (ENSPPAG00000034804) #18	HOXB7 (ENSPPAG00000010963) #19	HOXB6 (ENSPPAG00000032229) #20	HOXB5 (ENSPPAG00000039181) #21	HOXB4 (ENSPPAG00000040659) #22	HOXB3 (ENSPPAG00000032630) #23	HOXB2 (ENSPPAG00000027417) #24	HOXB1 (ENSPPAG00000039129) #25	SKAP1 (ENSPPAG00000039277) #27	SNX11 (ENSPPAG00000033185) #28	ENSPPAG00000030413 #29	NFE2L1 (ENSPPAG00000031737) #30	COPZ2 (ENSPPAG00000043351) #32	ENSPPAG00000029145 #33	PRR15L (ENSPPAG00000003316) #34	PNPO (ENSPPAG00000038148) #35	SP2 (ENSPPAG00000027065) #36	SP6 (ENSPPAG00000026169) #37	SCRN2 (ENSPPAG00000028214)	LRRC46 (ENSPPAG00000038983)
Human	MODERN SPECIES	8	IGF2BP1 (ENSG00000159217) #9	GIP (ENSG00000159224) #10	SNF8 (ENSG00000159210) #11	UBE2Z (ENSG00000159202) #12	ATP5MC1 (ENSG00000159199) #13	CALCOCO2 (ENSG00000136436) #14	TTLL6 (ENSG00000170703) #15	HOXB13 (ENSG00000159184) #16	PRAC2 (ENSG00000229637)	PRAC1 (ENSG00000159182)	HOXB9 (ENSG00000170689) #17	HOXB8 (ENSG00000120068) #18	HOXB7 (ENSG00000260027) #19	HOXB6 (ENSG00000108511) #20	HOXB5 (ENSG00000120075) #21	HOXB4 (ENSG00000182742) #22	HOXB3 (ENSG00000120093) #23	HOXB2 (ENSG00000173917) #24	HOXB1 (ENSG00000120094) #25	SKAP1 (ENSG00000141293) #27	SNX11 (ENSG00000002919) #28	CBX1 (ENSG00000108468) #29	NFE2L1 (ENSG00000082641) #30	COPZ2 (ENSG00000005243) #32	CDK5RAP3 (ENSG00000108465) #33	PRR15L (ENSG00000167183) #34	PNPO (ENSG00000108439) #35	SP2 (ENSG00000167182) #36	SP6 (ENSG00000189120) #37	SCRN2 (ENSG00000141295)	LRRC46 (ENSG00000141294)
Orangutan	MODERN SPECIES	8	IGF2BP1 (ENSPPYG00000008913) #9	GIP (ENSPPYG00000008912) #10	ENSPPYG00000008911 #11	UBE2Z (ENSPPYG00000032681) #12	ATP5MC1 (ENSPPYG00000008909) #13	CALCOCO2 (ENSPPYG00000008907) #14	TTLL6 (ENSPPYG00000008906) #15	HOXB13 (ENSPPYG00000008904) #16	ENSPPYG00000036609	PRAC1 (ENSPPYG00000008903)	HOXB9 (ENSPPYG00000008902) #17	HOXB8 (ENSPPYG00000038542) #18	HOXB7 (ENSPPYG00000008901) #19	HOXB6 (ENSPPYG00000008899) #20	HOXB5 (ENSPPYG00000008898) #21	HOXB4 (ENSPPYG00000008897) #22	HOXB3 (ENSPPYG00000008896) #23	HOXB2 (ENSPPYG00000008895) #24	HOXB1 (ENSPPYG00000008894) #25	SKAP1 (ENSPPYG00000008893) #27	SNX11 (ENSPPYG00000008892) #28	ENSPPYG00000008891 ##29	NFE2L1 (ENSPPYG00000036998) #30	ENSPPYG00000008889 #32	CDK5RAP3 (ENSPPYG00000008888) #33	PRR15L (ENSPPYG00000008887) #34	PNPO (ENSPPYG00000040967) #35	SP2 (ENSPPYG00000008885) #36	SP6 (ENSPPYG00000008884) #37	SCRN2 (ENSPPYG00000008883)	LRRC46 (ENSPPYG00000032761)
Gibbon	MODERN SPECIES	105	ABI3 (ENSNLEG00000002938)	ENSNLEG00000002931	B4GALNT2 (ENSNLEG00000002844) #7	IGF2BP1 (ENSNLEG00000002786) #9	GIP (ENSNLEG00000002767) #10	SNF8 (ENSNLEG00000002743) #11	ENSNLEG00000002739 #12	ATP5MC1 (ENSNLEG00000002718) #13	CALCOCO2 (ENSNLEG00000002619) #14	TTLL6 (ENSNLEG00000002601) #15	HOXB13 (ENSNLEG00000002594) #16	ENSNLEG00000036120	ENSNLEG00000029075	HOXB6 (ENSNLEG00000002585) #20	HOXB5 (ENSNLEG00000002574) #21	HOXB4 (ENSNLEG00000002570) #22	HOXB2 (ENSNLEG00000002566) #24	ENSNLEG00000018815 #25	SKAP1 (ENSNLEG00000002519) #27	SNX11 (ENSNLEG00000002479) #28	ENSNLEG00000002435 #29	NFE2L1 (ENSNLEG00000002415) #30	ENSNLEG00000002409 #32	ENSNLEG00000002109 #33	PRR15L (ENSNLEG00000002102) #34	PNPO (ENSNLEG00000002062) #35	ENSNLEG00000002058 #36	SP6 (ENSNLEG00000002050) #37	SCRN2 (ENSNLEG00000001940)	LRRC46 (ENSNLEG00000001902)	MRPL10 (ENSNLEG00000001803)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Vervet Monkey	MODERN SPECIES	7	GNGT2 (ENSCSAG00000002475)	B4GALNT2 (ENSCSAG00000002479) #7	IGF2BP1 (ENSCSAG00000002487) #9	GIP (ENSCSAG00000002491) #10	SNF8 (ENSCSAG00000002494) #11	UBE2Z (ENSCSAG00000002496) #12	ATP5MC1 (ENSCSAG00000002502) #13	CALCOCO2 (ENSCSAG00000002506) #14	TTLL6 (ENSCSAG00000002511) #15	HOXB13 (ENSCSAG00000002517) #16	HOXB9 (ENSCSAG00000002521) #17	HOXB8 (ENSCSAG00000002523) #18	HOXB7 (ENSCSAG00000002524) #19	HOXB6 (ENSCSAG00000002526) #20	HOXB5 (ENSCSAG00000002529) #21	HOXB4 (ENSCSAG00000002530) #22	HOXB3 (ENSCSAG00000002533) #23	HOXB2 (ENSCSAG00000002536) #24	HOXB1 (ENSCSAG00000002538) #25	ENSCSAG00000019043	SKAP1 (ENSCSAG00000002542) #27	SNX11 (ENSCSAG00000002545) #28	CBX1 (ENSCSAG00000002547) #29	NFE2L1 (ENSCSAG00000002550) #30	COPZ2 (ENSCSAG00000002558) #32	CDK5RAP3 (ENSCSAG00000002562) #33	PRR15L (ENSCSAG00000019042) #34	PNPO (ENSCSAG00000002565) #35	SP2 (ENSCSAG00000002567) #36	SP6 (ENSCSAG00000019041) #37	SCRN2 (ENSCSAG00000002569)
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b.e #13	ENSGT00950000183025.a #14	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b.e #13	ENSGT00950000183025.a #14	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Crab-eating macaque	MODERN SPECIES	7	UBE2Z (ENSMFAG00000045564) #12	ENSMFAG00000037178 #13	ENSMFAG00000055147	CALCOCO2 (ENSMFAG00000000840) #14	ENSMFAG00000030534	ENSMFAG00000059251	TTLL6 (ENSMFAG00000035518) #15	HOXB13 (ENSMFAG00000039799) #16	PRAC1 (ENSMFAG00000039547)	ENSMFAG00000047612	HOXB9 (ENSMFAG00000062545) #17	HOXB8 (ENSMFAG00000033418) #18	HOXB7 (ENSMFAG00000039298) #19	HOXB6 (ENSMFAG00000002294) #20	HOXB5 (ENSMFAG00000042418) #21	HOXB4 (ENSMFAG00000041000) #22	ENSMFAG00000062776	HOXB2 (ENSMFAG00000034146) #24	HOXB1 (ENSMFAG00000052359) #25	SKAP1 (ENSMFAG00000038763) #27	ENSMFAG00000048147	ENSMFAG00000047205	SNX11 (ENSMFAG00000001845) #28	CBX1 (ENSMFAG00000036790) #29	NFE2L1 (ENSMFAG00000035583) #30	COPZ2 (ENSMFAG00000045896) #32	CDK5RAP3 (ENSMFAG00000046364) #33	PRR15L (ENSMFAG00000030161) #34	PNPO (ENSMFAG00000039285) #35	SP2 (ENSMFAG00000038712) #36	ENSMFAG00000052999
Rhesus	MODERN SPECIES	7	IGF2BP1 (ENSMMUG00000011533) #9	GIP (ENSMMUG00000049405) #10	SNF8 (ENSMMUG00000021087) #11	UBE2Z (ENSMMUG00000057164) #12	ATP5MC1 (ENSMMUG00000013395) #13	ENSMMUG00000016305	TTLL6 (ENSMMUG00000003436) #15	HOXB13 (ENSMMUG00000060879) #16	PRAC1 (ENSMMUG00000053394)	HOXB9 (ENSMMUG00000052505) #17	HOXB8 (ENSMMUG00000020868) #18	HOXB7 (ENSMMUG00000055324) #19	HOXB6 (ENSMMUG00000062283) #20	HOXB5 (ENSMMUG00000051420) #21	ENSMMUG00000045203	HOXB4 (ENSMMUG00000052130) #22	HOXB2 (ENSMMUG00000057001) #24	HOXB1 (ENSMMUG00000022212) #25	SKAP1 (ENSMMUG00000050742) #27	SNX11 (ENSMMUG00000020658) #28	CBX1 (ENSMMUG00000019882) #29	NFE2L1 (ENSMMUG00000021935) #30	COPZ2 (ENSMMUG00000021934) #32	CDK5RAP3 (ENSMMUG00000004760) #33	PRR15L (ENSMMUG00000050551) #34	PNPO (ENSMMUG00000003325) #35	SP2 (ENSMMUG00000004765) #36	ENSMMUG00000053935	SP6 (ENSMMUG00000061952) #37	MRPL10 (ENSMMUG00000021486)	LRRC46 (ENSMMUG00000061605)
Pig-tailed macaque	MODERN SPECIES	494	GIP (ENSMNEG00000042307) #10	SNF8 (ENSMNEG00000032473) #11	UBE2Z (ENSMNEG00000040572) #12	ENSMNEG00000011359 #13	ENSMNEG00000027016	CALCOCO2 (ENSMNEG00000041410) #14	TTLL6 (ENSMNEG00000035034) #15	HOXB13 (ENSMNEG00000036275) #16	PRAC2 (ENSMNEG00000038796)	PRAC1 (ENSMNEG00000045191)	HOXB9 (ENSMNEG00000045476) #17	HOXB8 (ENSMNEG00000034944) #18	HOXB7 (ENSMNEG00000040001) #19	HOXB6 (ENSMNEG00000042554) #20	HOXB5 (ENSMNEG00000039003) #21	HOXB4 (ENSMNEG00000032435) #22	HOXB3 (ENSMNEG00000032425) #23	HOXB2 (ENSMNEG00000043416) #24	HOXB1 (ENSMNEG00000036848) #25	ENSMNEG00000033446	SKAP1 (ENSMNEG00000015541) #27	SNX11 (ENSMNEG00000034920) #28	CBX1 (ENSMNEG00000039720) #29	NFE2L1 (ENSMNEG00000037921) #30	COPZ2 (ENSMNEG00000038720) #32	CDK5RAP3 (ENSMNEG00000029039) #33	PRR15L (ENSMNEG00000028174) #34	PNPO (ENSMNEG00000037010) #35	SP2 (ENSMNEG00000029577) #36	SP6 (ENSMNEG00000023861) #37	SCRN2 (ENSMNEG00000031786)
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Olive baboon	MODERN SPECIES	8	IGF2BP1 (ENSPANG00000022833) #9	GIP (ENSPANG00000022832) #10	SNF8 (ENSPANG00000022831) ##11	UBE2Z (ENSPANG00000022830) #12	ATP5MC1 (ENSPANG00000022880) #13	CALCOCO2 (ENSPANG00000022881) #14	ENSPANG00000049214	TTLL6 (ENSPANG00000022885) #15	HOXB13 (ENSPANG00000048407) #16	PRAC1 (ENSPANG00000034268)	HOXB9 (ENSPANG00000022896) #17	HOXB8 (ENSPANG00000022895) #18	HOXB7 (ENSPANG00000041701) #19	HOXB6 (ENSPANG00000022891) #20	HOXB5 (ENSPANG00000022889) #21	HOXB4 (ENSPANG00000022888) #22	ENSPANG00000045928	HOXB2 (ENSPANG00000034765) #24	HOXB1 (ENSPANG00000022886) #25	SKAP1 (ENSPANG00000022897) #27	ENSPANG00000026200	SNX11 (ENSPANG00000022898) #28	CBX1 (ENSPANG00000022906) #29	NFE2L1 (ENSPANG00000022904) #30	COPZ2 (ENSPANG00000022903) #32	CDK5RAP3 (ENSPANG00000022902) #33	PNPO (ENSPANG00000022924) #35	SP2 (ENSPANG00000022922) #36	SP6 (ENSPANG00000017158) #37	SCRN2 (ENSPANG00000022920)	LRRC46 (ENSPANG00000022918)
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00390000018696.n	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Sooty mangabey	MODERN SPECIES	564	GIP (ENSCATG00000031593) #10	SNF8 (ENSCATG00000038375) #11	UBE2Z (ENSCATG00000038755) #12	ATP5MC1 (ENSCATG00000030174) #13	CALCOCO2 (ENSCATG00000007708) #14	ENSCATG00000016293	TTLL6 (ENSCATG00000029768) #15	HOXB13 (ENSCATG00000041758) #16	PRAC1 (ENSCATG00000038550)	HOXB9 (ENSCATG00000002169) #17	HOXB8 (ENSCATG00000025318) #18	HOXB7 (ENSCATG00000042829) #19	HOXB6 (ENSCATG00000043342) #20	HOXB5 (ENSCATG00000027616) #21	HOXB3 (ENSCATG00000031126) #23	HOXB4 (ENSCATG00000040704) #22	HOXB2 (ENSCATG00000035238) #24	HOXB1 (ENSCATG00000035575) #25	SKAP1 (ENSCATG00000044458) #27	ENSCATG00000019817	SNX11 (ENSCATG00000030351) #28	ENSCATG00000034735 ##29	NFE2L1 (ENSCATG00000040775) #30	COPZ2 (ENSCATG00000042708) #32	CDK5RAP3 (ENSCATG00000006699) #33	PRR15L (ENSCATG00000020186) #34	PNPO (ENSCATG00000039934) #35	ENSCATG00000003341 #36	SP6 (ENSCATG00000020123) #37	SCRN2 (ENSCATG00000038846)	LRRC46 (ENSCATG00000031406)
Drill	MODERN SPECIES	1297	ENSMLEG00000043660	GIP (ENSMLEG00000032963) #10	SNF8 (ENSMLEG00000037501) #11	UBE2Z (ENSMLEG00000043345) #12	ATP5MC1 (ENSMLEG00000026746) #13	CALCOCO2 (ENSMLEG00000034129) #14	TTLL6 (ENSMLEG00000023683) #15	HOXB13 (ENSMLEG00000043860) #16	PRAC1 (ENSMLEG00000033309)	HOXB9 (ENSMLEG00000030602) #17	HOXB8 (ENSMLEG00000007179) #18	HOXB7 (ENSMLEG00000042331) #19	HOXB6 (ENSMLEG00000029580) #20	HOXB5 (ENSMLEG00000009970) #21	HOXB3 (ENSMLEG00000026268) #23	HOXB4 (ENSMLEG00000029897) #22	HOXB2 (ENSMLEG00000031955) #24	HOXB1 (ENSMLEG00000037557) #25	SKAP1 (ENSMLEG00000029308) #27	SNX11 (ENSMLEG00000039008) #28	CBX1 (ENSMLEG00000038745) #29	NFE2L1 (ENSMLEG00000039330) #30	COPZ2 (ENSMLEG00000039090) #32	CDK5RAP3 (ENSMLEG00000033869) #33	PRR15L (ENSMLEG00000020212) #34	PNPO (ENSMLEG00000040872) #35	SP2 (ENSMLEG00000032228) #36	SP6 (ENSMLEG00000027177) #37	SCRN2 (ENSMLEG00000041491)	LRRC46 (ENSMLEG00000031583)	MRPL10 (ENSMLEG00000042780)
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.u.a #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Black snub-nosed monkey	MODERN SPECIES	1661	IGF2BP1 (ENSRBIG00000035739) #9	GIP (ENSRBIG00000039886) #10	SNF8 (ENSRBIG00000038039) #11	UBE2Z (ENSRBIG00000038578) #12	ATP5MC1 (ENSRBIG00000026711) #13	CALCOCO2 (ENSRBIG00000035235) #14	TTLL6 (ENSRBIG00000035925) #15	HOXB13 (ENSRBIG00000035598) #16	PRAC2 (ENSRBIG00000032698)	PRAC1 (ENSRBIG00000041996)	HOXB9 (ENSRBIG00000035654) #17	HOXB8 (ENSRBIG00000043329) #18	HOXB7 (ENSRBIG00000039896) #19	HOXB6 (ENSRBIG00000029050) #20	HOXB5 (ENSRBIG00000015821) #21	HOXB4 (ENSRBIG00000036141) #22	HOXB3 (ENSRBIG00000036705) #23	HOXB2 (ENSRBIG00000029105) #24	HOXB1 (ENSRBIG00000041849) #25	SKAP1 (ENSRBIG00000042563) #27	SNX11 (ENSRBIG00000030129) #28	ENSRBIG00000027048 #29	NFE2L1 (ENSRBIG00000034817) #30	COPZ2 (ENSRBIG00000038810) #32	CDK5RAP3 (ENSRBIG00000039441) #33	PRR15L (ENSRBIG00000030176) #34	PNPO (ENSRBIG00000042160) #35	SP2 (ENSRBIG00000032526) #36	ENSRBIG00000039530	TXNDC2 (ENSRBIG00000040108)	ENSRBIG00000040735
Tarsier	MODERN SPECIES	4193													HOXB7 (ENSTSYG00000028173) #19	HOXB6 (ENSTSYG00000031001) #20	HOXB5 (ENSTSYG00000032912) #21	HOXB4 (ENSTSYG00000026874) #22	ENSTSYG00000029322	HOXB3 (ENSTSYG00000035231) #23	HOXB2 (ENSTSYG00000004903) #24	HOXB1 (ENSTSYG00000004656) #25
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.h #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.h #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Mouse lemur	MODERN SPECIES	7	B4GALNT2 (ENSMICG00000008596) #7	ENSMICG00000037104	ENSMICG00000013324 #9	GIP (ENSMICG00000013317) #10	SNF8 (ENSMICG00000013305) #11	UBE2Z (ENSMICG00000046102) #12	ENSMICG00000003414	CALCOCO2 (ENSMICG00000015330) #14	TTLL6 (ENSMICG00000007549) #15	HOXB13 (ENSMICG00000007546) #16	HOXB9 (ENSMICG00000038413) #17	HOXB8 (ENSMICG00000045961) #18	HOXB7 (ENSMICG00000007539) #19	HOXB6 (ENSMICG00000042216) #20	HOXB5 (ENSMICG00000047139) #21	HOXB4 (ENSMICG00000043173) #22	HOXB3 (ENSMICG00000007522) #23	HOXB2 (ENSMICG00000038222) #24	HOXB1 (ENSMICG00000048152) #25	SKAP1 (ENSMICG00000047158) #27	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #28	NFE2L1 (ENSMICG00000014716) #30	ENSMICG00000009510 #29	COPZ2 (ENSMICG00000014097) #32	CDK5RAP3 (ENSMICG00000014077) #33	ENSMICG00000014065 #35	SP2 (ENSMICG00000036051) #36	SP6 (ENSMICG00000047695) #37	SCRN2 (ENSMICG00000004823)	LRRC46 (ENSMICG00000004816)
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.h #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Coquerels sifaka	MODERN SPECIES	120	B4GALNT2 (ENSPCOG00000013984) #7	ENSPCOG00000018672	IGF2BP1 (ENSPCOG00000006475) #9	GIP (ENSPCOG00000024832) #10	SNF8 (ENSPCOG00000026895) #11	UBE2Z (ENSPCOG00000014816) #12	ENSPCOG00000008741	CALCOCO2 (ENSPCOG00000021998) #14	TTLL6 (ENSPCOG00000021391) #15	HOXB13 (ENSPCOG00000018182) #16	HOXB9 (ENSPCOG00000027130) #17	HOXB8 (ENSPCOG00000024853) #18	HOXB7 (ENSPCOG00000028248) #19	HOXB6 (ENSPCOG00000019931) #20	HOXB5 (ENSPCOG00000015692) #21	HOXB4 (ENSPCOG00000022963) #22	HOXB3 (ENSPCOG00000020113) #23	HOXB2 (ENSPCOG00000017380) #24	HOXB1 (ENSPCOG00000025930) #25	SKAP1 (ENSPCOG00000022221) #27	SNX11 (ENSPCOG00000011015) #28	ENSPCOG00000010902 #29	NFE2L1 (ENSPCOG00000021740) #30	COPZ2 (ENSPCOG00000018359) #32	CDK5RAP3 (ENSPCOG00000016598) #33	PNPO (ENSPCOG00000017906) #35	SP2 (ENSPCOG00000017198) #36	SP6 (ENSPCOG00000008529) #37	SCRN2 (ENSPCOG00000014438)	LRRC46 (ENSPCOG00000015829)	MRPL10 (ENSPCOG00000025492)
Greater bamboo lemur	MODERN SPECIES	168			IGF2BP1 (ENSPSMG00000020445) #9	GIP (ENSPSMG00000020432) #10	SNF8 (ENSPSMG00000020426) #11	UBE2Z (ENSPSMG00000020387) #12	ENSPSMG00000020369	CALCOCO2 (ENSPSMG00000020308) #14	ENSPSMG00000020243 #15	HOXB13 (ENSPSMG00000020237) #16	HOXB9 (ENSPSMG00000020232) #17	HOXB8 (ENSPSMG00000020227) #18	HOXB7 (ENSPSMG00000020218) #19	HOXB6 (ENSPSMG00000020209) #20	HOXB5 (ENSPSMG00000020200) #21	HOXB4 (ENSPSMG00000020187) #22	HOXB3 (ENSPSMG00000020182) #23	HOXB2 (ENSPSMG00000020176) #24	HOXB1 (ENSPSMG00000020167) #25	SKAP1 (ENSPSMG00000020161) #27	SNX11 (ENSPSMG00000020139) #28	CBX1 (ENSPSMG00000020119) #29
Bushbaby	MODERN SPECIES	133	B4GALNT2 (ENSOGAG00000003570) #7	IGF2BP1 (ENSOGAG00000001270) #9	GIP (ENSOGAG00000010130) #10	ENSOGAG00000001269 #11	UBE2Z (ENSOGAG00000001267) #12	ATP5MC1 (ENSOGAG00000011713) #13	CALCOCO2 (ENSOGAG00000011709) #14	TTLL6 (ENSOGAG00000011701) #15	HOXB13 (ENSOGAG00000032643) #16	ENSOGAG00000034464	HOXB9 (ENSOGAG00000008668) #17	HOXB8 (ENSOGAG00000029480) #18	HOXB7 (ENSOGAG00000008667) #19	HOXB6 (ENSOGAG00000008661) #20	HOXB5 (ENSOGAG00000032432) #21	HOXB4 (ENSOGAG00000033709) #22	HOXB3 (ENSOGAG00000032090) #23	HOXB2 (ENSOGAG00000029280) #24	HOXB1 (ENSOGAG00000031645) #25	SKAP1 (ENSOGAG00000015855) #27	SNX11 (ENSOGAG00000015854) #28	CBX1 (ENSOGAG00000005658) #29	NFE2L1 (ENSOGAG00000025191) #30	COPZ2 (ENSOGAG00000004954) #32	CDK5RAP3 (ENSOGAG00000004951) #33	PRR15L (ENSOGAG00000006187) #34	PNPO (ENSOGAG00000006186) #35	SP2 (ENSOGAG00000030380) #36	SP6 (ENSOGAG00000030282) #37	SCRN2 (ENSOGAG00000006181)	LRRC46 (ENSOGAG00000006177)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Glires	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Myomorpha	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Muroidea	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.a.a ##29	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.`b.b	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.a.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Chinese hamster chok1gshd	MODERN SPECIES	33	B4galnt2 (ENSCGRG00001014272) #7	ENSCGRG00001000282 #9	Gip (ENSCGRG00001021533) #10	Snf8 (ENSCGRG00001000737) #11	Ube2z (ENSCGRG00001019150) #12	ENSCGRG00001022606	ENSCGRG00001010560	ENSCGRG00001011435 #14	Ttll6 (ENSCGRG00001018398) #15	Hoxb13 (ENSCGRG00001015060) #16	Hoxb9 (ENSCGRG00001015314) #17	Hoxb8 (ENSCGRG00001020235) #18	Hoxb7 (ENSCGRG00001021590) #19	Hoxb6 (ENSCGRG00001015674) #20	Hoxb5 (ENSCGRG00001016167) #21	Hoxb4 (ENSCGRG00001022431) #22	Hoxb3 (ENSCGRG00001016667) #23	Hoxb2 (ENSCGRG00001017587) #24	Hoxb1 (ENSCGRG00001024619) #25	ENSCGRG00001023355 #27	ENSCGRG00001020759 #27	Snx11 (ENSCGRG00001022221) #28	Cbx1 (ENSCGRG00001014799) ##29	Nfe2l1 (ENSCGRG00001015287) #30	Copz2 (ENSCGRG00001014767) #32	Cdk5rap3 (ENSCGRG00001006966) #33	Prr15l (ENSCGRG00001008926) #34	Pnpo (ENSCGRG00001018189) #35	Sp2 (ENSCGRG00001010976) #36	Sp6 (ENSCGRG00001002797) #37	Scrn2 (ENSCGRG00001022143)
Golden Hamster	MODERN SPECIES	674	Phospho1 (ENSMAUG00000012074)	Abi3 (ENSMAUG00000021085)	Gngt2 (ENSMAUG00000019144)	B4galnt2 (ENSMAUG00000007916) #7	Gip (ENSMAUG00000009238) #10	Snf8 (ENSMAUG00000001857) #11	Ube2z (ENSMAUG00000007792) #12	ENSMAUG00000021751	Ttll6 (ENSMAUG00000020973) #15	Hoxb13 (ENSMAUG00000008407) #16	Hoxb9 (ENSMAUG00000017720) #17	Hoxb8 (ENSMAUG00000012636) #18	Hoxb7 (ENSMAUG00000021297) #19	Hoxb6 (ENSMAUG00000021423) #20	Hoxb5 (ENSMAUG00000021419) #21	Hoxb4 (ENSMAUG00000009367) #22	Hoxb3 (ENSMAUG00000011251) #23	Hoxb2 (ENSMAUG00000021979) #24	Hoxb1 (ENSMAUG00000013237) #25	Skap1 (ENSMAUG00000022191) #27	Snx11 (ENSMAUG00000021528) #28	ENSMAUG00000003463 #29	Nfe2l1 (ENSMAUG00000020456) #30	Copz2 (ENSMAUG00000010560) #32	Cdk5rap3 (ENSMAUG00000007991) #33	Pnpo (ENSMAUG00000021706) #35	Sp2 (ENSMAUG00000019269) #36	Sp6 (ENSMAUG00000009667) #37	Scrn2 (ENSMAUG00000010014)	Lrrc46 (ENSMAUG00000019416)	Mrpl10 (ENSMAUG00000000820)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Prairie vole	MODERN SPECIES	114				ENSMOCG00000004266	ENSMOCG00000021226 #10	Snf8 (ENSMOCG00000016684) #11	Ube2z (ENSMOCG00000018241) #12	ENSMOCG00000013163	Ttll6 (ENSMOCG00000021089) #15	Hoxb13 (ENSMOCG00000021389) #16	Hoxb9 (ENSMOCG00000020312) #17	Hoxb8 (ENSMOCG00000018435) #18	Hoxb7 (ENSMOCG00000020820) #19	Hoxb6 (ENSMOCG00000020355) #20	Hoxb5 (ENSMOCG00000014523) #21	Hoxb4 (ENSMOCG00000022964) #22	Hoxb3 (ENSMOCG00000020739) #23	Hoxb2 (ENSMOCG00000014846) #24	Hoxb1 (ENSMOCG00000002452) #25	Skap1 (ENSMOCG00000018431) #27	Snx11 (ENSMOCG00000019303) #28	Cbx1 (ENSMOCG00000001520) #29	Nfe2l1 (ENSMOCG00000016002) #30	Copz2 (ENSMOCG00000022427) #32	Cdk5rap3 (ENSMOCG00000019534) #33	Prr15l (ENSMOCG00000006695) #34	Pnpo (ENSMOCG00000011655) #35	Sp2 (ENSMOCG00000020935) #36	Sp6 (ENSMOCG00000007065) #37	Scrn2 (ENSMOCG00000019511)	Lrrc46 (ENSMOCG00000016707)
Northern American deer mouse	MODERN SPECIES	21	Phospho1 (ENSPEMG00000026539)	Abi3 (ENSPEMG00000014242)	Gngt2 (ENSPEMG00000027491)	B4galnt2 (ENSPEMG00000020717) #7	Igf2bp1 (ENSPEMG00000021974) #9	Gip (ENSPEMG00000021184) #10	Snf8 (ENSPEMG00000022229) #11	Ube2z (ENSPEMG00000020953) #12	Atp5g1 (ENSPEMG00000020590)	ENSPEMG00000028729 #14	ENSPEMG00000025676 #14	Ttll6 (ENSPEMG00000021918) #15	Hoxb13 (ENSPEMG00000021511) #16	Hoxb9 (ENSPEMG00000027158) #17	Hoxb5 (ENSPEMG00000030101) #21	Hoxb4 (ENSPEMG00000029805) #22	Hoxb3 (ENSPEMG00000028692) #23	Hoxb2 (ENSPEMG00000029510) #24	Hoxb1 (ENSPEMG00000023977) #25	Skap1 (ENSPEMG00000000585) #27	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #28	Cbx1 (ENSPEMG00000020976) ##29	Nfe2l1 (ENSPEMG00000010512) #30	Copz2 (ENSPEMG00000011137) #32	Cdk5rap3 (ENSPEMG00000020712) #33	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) #34	Pnpo (ENSPEMG00000025094) #35	Sp2 (ENSPEMG00000017112) #36	Sp6 (ENSPEMG00000001231) #37
Murinae	ANCESTRAL SPECIES	6	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Mus	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Mus_A	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Mus_B	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Mus_C	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Steppe mouse	MODERN SPECIES	3291	Gngt2 (ENSMSIG00000019268)	B4galnt2 (ENSMSIG00000019230) #7	Igf2bp1 (ENSMSIG00000019193) #9	Gip (ENSMSIG00000019162) #10	Snf8 (ENSMSIG00000019072) #11	Ube2z (ENSMSIG00000019038) #12	Atp5g1 (ENSMSIG00000018986)	ENSMSIG00000018956 #14	Ttll6 (ENSMSIG00000018881) #15	Hoxb13 (ENSMSIG00000018865) #16	Hoxb9 (ENSMSIG00000018823) #17	Hoxb8 (ENSMSIG00000018807) #18	Hoxb7 (ENSMSIG00000018805) #19	Hoxb6 (ENSMSIG00000018795) #20	Hoxb5 (ENSMSIG00000018787) #21	Hoxb4 (ENSMSIG00000018777) #22	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #23	Hoxb2 (ENSMSIG00000018769) #24	Hoxb1 (ENSMSIG00000018752) #25	Skap1 (ENSMSIG00000018601) #27	Snx11 (ENSMSIG00000018546) #28	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) #29	Nfe2l1 (ENSMSIG00000018374) #30	Copz2 (ENSMSIG00000018337) #32	Cdk5rap3 (ENSMSIG00000018309) #33	ENSMSIG00000018270 #34	ENSMSIG00000018267 #35	Sp2 (ENSMSIG00000018237) #36	Sp6 (ENSMSIG00000018223) #37
spretus	MODERN SPECIES	2	Gngt2 (MGP_SPRETEiJ_G0017860)	B4galnt2 (MGP_SPRETEiJ_G0017861) #7	Igf2bp1 (MGP_SPRETEiJ_G0017862) #9	Gip (MGP_SPRETEiJ_G0017863) #10	Snf8 (MGP_SPRETEiJ_G0017864) #11	Ube2z (MGP_SPRETEiJ_G0017865) #12	Atp5g1 (MGP_SPRETEiJ_G0017866)	MGP_SPRETEiJ_G0017867 #14	Ttll6 (MGP_SPRETEiJ_G0017868) #15	Hoxb13 (MGP_SPRETEiJ_G0017869) #16	Hoxb9 (MGP_SPRETEiJ_G0017870) #17	Hoxb8 (MGP_SPRETEiJ_G0017871) #18	Hoxb7 (MGP_SPRETEiJ_G0017872) #19	Hoxb6 (MGP_SPRETEiJ_G0017873) #20	Hoxb5 (MGP_SPRETEiJ_G0017874) #21	Hoxb4 (MGP_SPRETEiJ_G0017875) #22	Hoxb3 (MGP_SPRETEiJ_G0017876) #23	Hoxb2 (MGP_SPRETEiJ_G0017877) #24	Hoxb1 (MGP_SPRETEiJ_G0017878) #25	MGP_SPRETEiJ_G0017879 #27	Snx11 (MGP_SPRETEiJ_G0017880) #28	Cbx1 (MGP_SPRETEiJ_G0017881) #29	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #30	Copz2 (MGP_SPRETEiJ_G0017884) #32	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #33	Prr15l (MGP_SPRETEiJ_G0017886) #34	Pnpo (MGP_SPRETEiJ_G0017887) #35	Sp2 (MGP_SPRETEiJ_G0017888) #36	Sp6 (MGP_SPRETEiJ_G0017889) #37	Scrn2 (MGP_SPRETEiJ_G0017890)
Mouse	MODERN SPECIES	2	Gngt2 (ENSMUSG00000038811)	B4galnt2 (ENSMUSG00000013418) #7	Igf2bp1 (ENSMUSG00000013415) #9	Gip (ENSMUSG00000014351) #10	Snf8 (ENSMUSG00000006058) #11	Ube2z (ENSMUSG00000014349) #12	Atp5g1 (ENSMUSG00000006057)	Calcoco2 (ENSMUSG00000006056) #14	Ttll6 (ENSMUSG00000038756) #15	Hoxb13 (ENSMUSG00000049604) #16	Hoxb9 (ENSMUSG00000020875) #17	Hoxb8 (ENSMUSG00000056648) #18	Hoxb7 (ENSMUSG00000038721) #19	Hoxb6 (ENSMUSG00000000690) #20	Hoxb5 (ENSMUSG00000038700) #21	Hoxb4 (ENSMUSG00000038692) #22	Hoxb3 (ENSMUSG00000048763) #23	Hoxb2 (ENSMUSG00000075588) #24	Hoxb1 (ENSMUSG00000018973) #25	Skap1 (ENSMUSG00000057058) #27	Snx11 (ENSMUSG00000020876) #28	Cbx1 (ENSMUSG00000018666) #29	Nfe2l1 (ENSMUSG00000038615) #30	Copz2 (ENSMUSG00000018672) #32	Cdk5rap3 (ENSMUSG00000018669) #33	Prr15l (ENSMUSG00000047040) #34	Pnpo (ENSMUSG00000018659) #35	Sp2 (ENSMUSG00000018678) #36	Sp6 (ENSMUSG00000038560) #37	Scrn2 (ENSMUSG00000020877)	Lrrc46 (ENSMUSG00000020878)
Ryukyu mouse	MODERN SPECIES	2	Gngt2 (MGP_CAROLIEiJ_G0017014)	B4galnt2 (MGP_CAROLIEiJ_G0017015) #7	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #9	Gip (MGP_CAROLIEiJ_G0017017) #10	Snf8 (MGP_CAROLIEiJ_G0017018) #11	MGP_CAROLIEiJ_G0017019 #12	MGP_CAROLIEiJ_G0017020	MGP_CAROLIEiJ_G0017021 #14	Ttll6 (MGP_CAROLIEiJ_G0017022) #15	Hoxb13 (MGP_CAROLIEiJ_G0017023) #16	Hoxb9 (MGP_CAROLIEiJ_G0017024) #17	Hoxb8 (MGP_CAROLIEiJ_G0017025) #18	Hoxb7 (MGP_CAROLIEiJ_G0017026) #19	Hoxb6 (MGP_CAROLIEiJ_G0017027) #20	Hoxb5 (MGP_CAROLIEiJ_G0017028) #21	Hoxb4 (MGP_CAROLIEiJ_G0017029) #22	Hoxb3 (MGP_CAROLIEiJ_G0017030) #23	Hoxb2 (MGP_CAROLIEiJ_G0017031) #24	Hoxb1 (MGP_CAROLIEiJ_G0017032) #25	Skap1 (MGP_CAROLIEiJ_G0017033) #27	Snx11 (MGP_CAROLIEiJ_G0017034) #28	Cbx1 (MGP_CAROLIEiJ_G0017035) #29	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #30	Copz2 (MGP_CAROLIEiJ_G0017038) #32	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #33	Prr15l (MGP_CAROLIEiJ_G0017040) #34	Pnpo (MGP_CAROLIEiJ_G0017041) #35	Sp2 (MGP_CAROLIEiJ_G0017042) #36	Sp6 (MGP_CAROLIEiJ_G0017043) #37	MGP_CAROLIEiJ_G0017044
Shrew mouse	MODERN SPECIES	5	Gngt2 (MGP_PahariEiJ_G0018144)	B4galnt2 (MGP_PahariEiJ_G0018145) #7	MGP_PahariEiJ_G0018146 #9	Gip (MGP_PahariEiJ_G0018147) #10	Snf8 (MGP_PahariEiJ_G0018148) #11	Ube2z (MGP_PahariEiJ_G0018149) #12	Atp5g1 (MGP_PahariEiJ_G0018150)	MGP_PahariEiJ_G0018151 #14	Ttll6 (MGP_PahariEiJ_G0018152) #15	Hoxb13 (MGP_PahariEiJ_G0018153) #16	Hoxb9 (MGP_PahariEiJ_G0018154) #17	Hoxb8 (MGP_PahariEiJ_G0018155) #18	Hoxb7 (MGP_PahariEiJ_G0018156) #19	Hoxb6 (MGP_PahariEiJ_G0018157) #20	Hoxb5 (MGP_PahariEiJ_G0018158) #21	Hoxb4 (MGP_PahariEiJ_G0018159) #22	Hoxb3 (MGP_PahariEiJ_G0018160) #23	Hoxb2 (MGP_PahariEiJ_G0018161) #24	Hoxb1 (MGP_PahariEiJ_G0018162) #25	Skap1 (MGP_PahariEiJ_G0018163) #27	Snx11 (MGP_PahariEiJ_G0018164) #28	Cbx1 (MGP_PahariEiJ_G0018165) #29	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #30	Copz2 (MGP_PahariEiJ_G0018168) #32	Cdk5rap3 (MGP_PahariEiJ_G0018169) #33	Prr15l (MGP_PahariEiJ_G0018170) #34	Pnpo (MGP_PahariEiJ_G0018171) #35	Sp2 (MGP_PahariEiJ_G0018172) #36	Sp6 (MGP_PahariEiJ_G0018173) #37	Scrn2 (MGP_PahariEiJ_G0018174)
Rat	MODERN SPECIES	1	Phospho1 (ENSRNOG00000005569)	Abi3 (ENSRNOG00000005575)	B4galnt2 (ENSRNOG00000067203) #7	Igf2bp1 (ENSRNOG00000006122) #9	Gip (ENSRNOG00000006306) #10	Snf8 (ENSRNOG00000006500) #11	Ube2z (ENSRNOG00000006868) #12	ENSRNOG00000066153 #14	Ttll6 (ENSRNOG00000004939) #15	Hoxb13 (ENSRNOG00000007491) #16	Hoxb9 (ENSRNOG00000007573) #17	Hoxb8 (ENSRNOG00000007585) #18	Hoxb7 (ENSRNOG00000007611) #19	Hoxb6 (ENSRNOG00000007823) #20	Hoxb5 (ENSRNOG00000008010) #21	Hoxb4 (ENSRNOG00000008191) #22	Hoxb3 (ENSRNOG00000008313) #23	Hoxb2 (ENSRNOG00000008365) #24	Hoxb1 (ENSRNOG00000008506) #25	Skap1 (ENSRNOG00000023881) #27	Snx11 (ENSRNOG00000008642) #28	Cbx1 (ENSRNOG00000008689) #29	Nfe2l1 (ENSRNOG00000008830) #30	Copz2 (ENSRNOG00000009225) #32	Cdk5rap3 (ENSRNOG00000048747) #33	Prr15l (ENSRNOG00000049162) #34	Pnpo (ENSRNOG00000046493) #35	Sp2 (ENSRNOG00000010492) #36	Sp6 (ENSRNOG00000023551) #37	Scrn2 (ENSRNOG00000010214)	Lrrc46 (ENSRNOG00000009902)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Gngt2 (ENSNGAG00000001081)	B4galnt2 (ENSNGAG00000016426) #7	Igf2bp1 (ENSNGAG00000015679) #9	Gip (ENSNGAG00000020354) #10	Snf8 (ENSNGAG00000001366) #11	Ube2z (ENSNGAG00000024296) #12	ENSNGAG00000024212	ENSNGAG00000023585 #14	Ttll6 (ENSNGAG00000011763) #15	Hoxb13 (ENSNGAG00000011053) #16	Hoxb9 (ENSNGAG00000010851) #17	Hoxb8 (ENSNGAG00000010647) #18	Hoxb7 (ENSNGAG00000010205) #19	Hoxb6 (ENSNGAG00000000973) #20	Hoxb5 (ENSNGAG00000023238) #21	Hoxb4 (ENSNGAG00000021768) #22	Hoxb3 (ENSNGAG00000020227) #23	Hoxb2 (ENSNGAG00000019089) #24	Hoxb1 (ENSNGAG00000018593) #25	Skap1 (ENSNGAG00000012571) #27	Snx11 (ENSNGAG00000010446) #28	Cbx1 (ENSNGAG00000006760) #29	Nfe2l1 (ENSNGAG00000000736) #30	Copz2 (ENSNGAG00000023713) #32	ENSNGAG00000000747 #33	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432) #34	Pnpo (ENSNGAG00000020016) #35	Sp2 (ENSNGAG00000017612) #36	Sp6 (ENSNGAG00000015868) #37	Scrn2 (ENSNGAG00000023806)
Lesser Egyptian jerboa	MODERN SPECIES	56	Gngt2 (ENSJJAG00000002044)	ENSJJAG00000002566	B4galnt2 (ENSJJAG00000006322) #7	Igf2bp1 (ENSJJAG00000002687) #9	Gip (ENSJJAG00000010688) #10	Snf8 (ENSJJAG00000006012) #11	ENSJJAG00000003530 #12	ENSJJAG00000010301	Ttll6 (ENSJJAG00000010253) #15	Hoxb13 (ENSJJAG00000010401) #16	Hoxb9 (ENSJJAG00000009821) #17	Hoxb8 (ENSJJAG00000002398) #18	Hoxb7 (ENSJJAG00000001284) #19	Hoxb6 (ENSJJAG00000000997) #20	Hoxb5 (ENSJJAG00000000763) #21	Hoxb4 (ENSJJAG00000002642) #22	Hoxb3 (ENSJJAG00000007804) #23	Hoxb2 (ENSJJAG00000009465) #24	Hoxb1 (ENSJJAG00000001073) #25	Skap1 (ENSJJAG00000003458) #27	ENSJJAG00000005754 #28	ENSJJAG00000007753 #29	Nfe2l1 (ENSJJAG00000006432) #30	Copz2 (ENSJJAG00000001025) #32	ENSJJAG00000002511 #33	Prr15l (ENSJJAG00000006478) #34	Pnpo (ENSJJAG00000023608) #35	Sp2 (ENSJJAG00000003061) #36	Sp6 (ENSJJAG00000006452) #37	Scrn2 (ENSJJAG00000023635)	Lrrc46 (ENSJJAG00000010412)
Kangaroo rat	MODERN SPECIES	326	Phospho1 (ENSDORG00000002249)	Abi3 (ENSDORG00000002245)	Gngt2 (ENSDORG00000023588)	Igf2bp1 (ENSDORG00000014371) #9	Snf8 (ENSDORG00000009262) #11	Ube2z (ENSDORG00000009258) #12	ENSDORG00000008511 #13	ENSDORG00000028385	ENSDORG00000024585 #14	Hoxb13 (ENSDORG00000008369) #16	Hoxb9 (ENSDORG00000027423) #17	Hoxb8 (ENSDORG00000007906) #18	Hoxb7 (ENSDORG00000007905) #19	Hoxb6 (ENSDORG00000023877) #20	Hoxb5 (ENSDORG00000007900) #21	Hoxb4 (ENSDORG00000007899) #22	Hoxb3 (ENSDORG00000007898) #23	Hoxb2 (ENSDORG00000007897) #24	Hoxb1 (ENSDORG00000007896) #25	Snx11 (ENSDORG00000029078) #28	Cbx1 (ENSDORG00000026399) #29	Nfe2l1 (ENSDORG00000000715) #30	Copz2 (ENSDORG00000013441) #32	Prr15l (ENSDORG00000027427) #34	Pnpo (ENSDORG00000014110) #35	Sp2 (ENSDORG00000014109) #36	Sp6 (ENSDORG00000026201) #37	Scrn2 (ENSDORG00000002361)	Osbpl7 (ENSDORG00000002354)	Tbx21 (ENSDORG00000013302)	Npepps (ENSDORG00000009627)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Marmotini	ANCESTRAL SPECIES	8	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Alpin marmot	MODERN SPECIES	42	PHOSPHO1 (ENSMMMG00000000434)	ABI3 (ENSMMMG00000000452)	GNGT2 (ENSMMMG00000000525)	B4GALNT2 (ENSMMMG00000000569) #7	IGF2BP1 (ENSMMMG00000000613) #9	GIP (ENSMMMG00000000652) #10	SNF8 (ENSMMMG00000000680) #11	UBE2Z (ENSMMMG00000000717) #12	ATP5MC1 (ENSMMMG00000000731) #13	ENSMMMG00000000759 #14	TTLL6 (ENSMMMG00000001013) #15	HOXB13 (ENSMMMG00000001064) #16	HOXB7 (ENSMMMG00000001087) #19	HOXB6 (ENSMMMG00000001098) #20	HOXB5 (ENSMMMG00000001112) #21	HOXB4 (ENSMMMG00000001129) #22	HOXB3 (ENSMMMG00000001139) #23	HOXB1 (ENSMMMG00000001151) #25	SKAP1 (ENSMMMG00000001168) #27	SNX11 (ENSMMMG00000001243) #28	CBX1 (ENSMMMG00000001254) #29	NFE2L1 (ENSMMMG00000001284) #30	COPZ2 (ENSMMMG00000001352) #32	CDK5RAP3 (ENSMMMG00000001404) #33	GOSR2 (ENSMMMG00000001471)	RPRML (ENSMMMG00000001486)	LYZL6 (ENSMMMG00000001501)	ENSMMMG00000001520	ENSMMMG00000001551	ENSMMMG00000001756	ENSMMMG00000001792
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Arctic ground squirrel	MODERN SPECIES	46	GNGT2 (ENSUPAG00010006078)	B4GALNT2 (ENSUPAG00010006086) #7	IGF2BP1 (ENSUPAG00010006100) #9	GIP (ENSUPAG00010006136) #10	SNF8 (ENSUPAG00010006148) #11	UBE2Z (ENSUPAG00010006178) #12	ENSUPAG00010006195	CALCOCO2 (ENSUPAG00010006243) #14	TTLL6 (ENSUPAG00010006267) #15	HOXB13 (ENSUPAG00010006301) #16	HOXB9 (ENSUPAG00010006305) #17	HOXB8 (ENSUPAG00010006310) #18	HOXB7 (ENSUPAG00010006312) #19	HOXB6 (ENSUPAG00010006317) #20	HOXB5 (ENSUPAG00010006320) #21	HOXB4 (ENSUPAG00010006325) #22	HOXB3 (ENSUPAG00010006328) #23	HOXB2 (ENSUPAG00010006336) #24	HOXB1 (ENSUPAG00010006340) #25	SKAP1 (ENSUPAG00010006345) #27	SNX11 (ENSUPAG00010006370) #28	CBX1 (ENSUPAG00010006381) #29	NFE2L1 (ENSUPAG00010006396) #30	COPZ2 (ENSUPAG00010006455) #32	CDK5RAP3 (ENSUPAG00010006466) #33	PRR15L (ENSUPAG00010006473) #34	PNPO (ENSUPAG00010006483) #35	SP2 (ENSUPAG00010006507) #36	SP6 (ENSUPAG00010006522) #37	SCRN2 (ENSUPAG00010006526)	LRRC46 (ENSUPAG00010006533)
Squirrel	MODERN SPECIES	90	B4GALNT2 (ENSSTOG00000007604) #7	IGF2BP1 (ENSSTOG00000010643) #9	GIP (ENSSTOG00000004043) #10	SNF8 (ENSSTOG00000004023) #11	UBE2Z (ENSSTOG00000000796) #12	ATP5MC1 (ENSSTOG00000013404) #13	ENSSTOG00000013395 #14	TTLL6 (ENSSTOG00000006016) #15	ENSSTOG00000025444	HOXB13 (ENSSTOG00000014942) #16	HOXB9 (ENSSTOG00000009741) #17	HOXB8 (ENSSTOG00000028337) #18	HOXB7 (ENSSTOG00000025657) #19	HOXB6 (ENSSTOG00000020303) #20	HOXB5 (ENSSTOG00000009740) #21	HOXB4 (ENSSTOG00000009734) #22	HOXB3 (ENSSTOG00000025093) #23	HOXB2 (ENSSTOG00000023586) #24	HOXB1 (ENSSTOG00000028630) #25	SKAP1 (ENSSTOG00000013692) #27	SNX11 (ENSSTOG00000013684) #28	CBX1 (ENSSTOG00000023986) #29	NFE2L1 (ENSSTOG00000013664) #30	ENSSTOG00000027550 #32	CDK5RAP3 (ENSSTOG00000006244) #33	PRR15L (ENSSTOG00000006235) #34	PNPO (ENSSTOG00000006221) #35	SP2 (ENSSTOG00000015926) #36	SP6 (ENSSTOG00000001607) #37	SCRN2 (ENSSTOG00000027108)	LRRC46 (ENSSTOG00000002068)
Eurasian red squirrel	MODERN SPECIES	12	B4GALNT2 (ENSSVLG00005020850) #7	IGF2BP1 (ENSSVLG00005020596) #9	GIP (ENSSVLG00005020522) #10	SNF8 (ENSSVLG00005020472) #11	ENSSVLG00005020450	UBE2Z (ENSSVLG00005020428) #12	ATP5MC1 (ENSSVLG00005020344) #13	CALCOCO2 (ENSSVLG00005020296) #14	TTLL6 (ENSSVLG00005020005) #15	HOXB13 (ENSSVLG00005019820) #16	HOXB9 (ENSSVLG00005019725) #17	HOXB8 (ENSSVLG00005019675) #18	HOXB7 (ENSSVLG00005019618) #19	HOXB6 (ENSSVLG00005019586) #20	HOXB5 (ENSSVLG00005019546) #21	HOXB4 (ENSSVLG00005019455) #22	HOXB3 (ENSSVLG00005019421) #23	HOXB2 (ENSSVLG00005019378) #24	HOXB1 (ENSSVLG00005019304) #25	SKAP1 (ENSSVLG00005019232) #27	SNX11 (ENSSVLG00005019122) #28	CBX1 (ENSSVLG00005019034) #29	NFE2L1 (ENSSVLG00005018798) #30	COPZ2 (ENSSVLG00005018641) #32	CDK5RAP3 (ENSSVLG00005018459) #33	PRR15L (ENSSVLG00005018399) #34	PNPO (ENSSVLG00005018295) #35	ENSSVLG00005018218 #36	SP6 (ENSSVLG00005018194) #37	SCRN2 (ENSSVLG00005018077)	LRRC46 (ENSSVLG00005018036)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.dc.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Long-tailed chinchilla	MODERN SPECIES	158	ABI3 (ENSCLAG00000015475)	GNGT2 (ENSCLAG00000014970)	B4GALNT2 (ENSCLAG00000016224) #7	IGF2BP1 (ENSCLAG00000015853) #9	ENSCLAG00000014301 #10	SNF8 (ENSCLAG00000013387) #11	UBE2Z (ENSCLAG00000016068) #12	ATP5MC1 (ENSCLAG00000015723) #13	CALCOCO2 (ENSCLAG00000015881) #14	TTLL6 (ENSCLAG00000013529) #15	HOXB13 (ENSCLAG00000014855) #16	ENSCLAG00000015198 #17	HOXB7 (ENSCLAG00000014906) #19	HOXB6 (ENSCLAG00000015524) #20	HOXB5 (ENSCLAG00000014374) #21	HOXB4 (ENSCLAG00000014725) #22	HOXB3 (ENSCLAG00000015322) #23	HOXB2 (ENSCLAG00000015271) #24	HOXB1 (ENSCLAG00000013047) #25	SKAP1 (ENSCLAG00000015423) #27	SNX11 (ENSCLAG00000015837) #28	CBX1 (ENSCLAG00000013587) #29	NFE2L1 (ENSCLAG00000014836) #30	COPZ2 (ENSCLAG00000013544) #32	CDK5RAP3 (ENSCLAG00000012292) #33	PRR15L (ENSCLAG00000017903) #34	PNPO (ENSCLAG00000013871) #35	SP2 (ENSCLAG00000014115) #36	SP6 (ENSCLAG00000016276) #37	LRRC46 (ENSCLAG00000016713)	SCRN2 (ENSCLAG00000013965)
Degu	MODERN SPECIES	97	ABI3 (ENSODEG00000017358)	GNGT2 (ENSODEG00000017526)	B4GALNT2 (ENSODEG00000018456) #7	ENSODEG00000016991 #9	ENSODEG00000017109	GIP (ENSODEG00000017003) #10	ENSODEG00000017032 #11	UBE2Z (ENSODEG00000017306) #12	ATP5MC1 (ENSODEG00000017366) #13	TTLL6 (ENSODEG00000017145) #15	HOXB13 (ENSODEG00000017199) #16	HOXB9 (ENSODEG00000017293) #17	HOXB8 (ENSODEG00000017119) #18	HOXB6 (ENSODEG00000016988) #20	HOXB5 (ENSODEG00000017253) #21	HOXB4 (ENSODEG00000017038) #22	HOXB3 (ENSODEG00000017116) #23	HOXB2 (ENSODEG00000017153) #24	HOXB1 (ENSODEG00000017050) #25	SKAP1 (ENSODEG00000017533) #27	SNX11 (ENSODEG00000017458) #28	CBX1 (ENSODEG00000017272) #29	NFE2L1 (ENSODEG00000017348) #30	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #32	ENSODEG00000017229 #33	PNPO (ENSODEG00000017424) #35	SP2 (ENSODEG00000017126) #36	SP6 (ENSODEG00000017625) #37	SCRN2 (ENSODEG00000017395)	LRRC46 (ENSODEG00000017367)
Naked mole-rat female	MODERN SPECIES	12	B4GALNT2 (ENSHGLG00000011792) #7	IGF2BP1 (ENSHGLG00000010492) #9	ENSHGLG00000010703 #10	SNF8 (ENSHGLG00000011519) #11	UBE2Z (ENSHGLG00000016280) #12	ATP5MC1 (ENSHGLG00000035460) #13	CALCOCO2 (ENSHGLG00000012114) #14	TTLL6 (ENSHGLG00000019187) #15	HOXB13 (ENSHGLG00000014634) #16	ENSHGLG00000048296	HOXB9 (ENSHGLG00000014731) #17	HOXB8 (ENSHGLG00000038380) #18	HOXB7 (ENSHGLG00000045318) #19	HOXB6 (ENSHGLG00000012400) #20	HOXB5 (ENSHGLG00000039265) #21	HOXB4 (ENSHGLG00000034075) #22	HOXB3 (ENSHGLG00000010686) #23	HOXB2 (ENSHGLG00000010090) #24	HOXB1 (ENSHGLG00000009781) #25	SKAP1 (ENSHGLG00000014563) #27	SNX11 (ENSHGLG00000016837) #28	CBX1 (ENSHGLG00000013574) #29	NFE2L1 (ENSHGLG00000012592) #30	COPZ2 (ENSHGLG00000018543) #32	CDK5RAP3 (ENSHGLG00000019464) #33	PRR15L (ENSHGLG00000014696) #34	PNPO (ENSHGLG00000013159) #35	SP2 (ENSHGLG00000009902) #36	SP6 (ENSHGLG00000021113) #37	SCRN2 (ENSHGLG00000041375)	LRRC46 (ENSHGLG00000035931)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000162072 #22
Hedgehog	MODERN SPECIES	16385																HOXB4 (ENSEEUG00000007049) #22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Suina	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Pig	MODERN SPECIES	3	ENSSSCG00000033286	ENSSSCG00000030269 #7	IGF2BP1 (ENSSSCG00000023128) #9	GIP (ENSSSCG00000026330) #10	SNF8 (ENSSSCG00000021461) #11	UBE2Z (ENSSSCG00000025638) #12	ATP5MC1 (ENSSSCG00000017544) #13	CALCOCO2 (ENSSSCG00000017543) #14	TTLL6 (ENSSSCG00000017542) #15	HOXB13 (ENSSSCG00000017541) #16	HOXB9 (ENSSSCG00000061856) #17	HOXB8 (ENSSSCG00000017537) #18	HOXB7 (ENSSSCG00000017538) #19	HOXB6 (ENSSSCG00000017539) #20	HOXB5 (ENSSSCG00000017540) #21	HOXB4 (ENSSSCG00000017535) #22	HOXB3 (ENSSSCG00000017534) #23	HOXB2 (ENSSSCG00000017533) #24	HOXB1 (ENSSSCG00000017532) #25	SKAP1 (ENSSSCG00000017527) #27	SNX11 (ENSSSCG00000017528) #28	CBX1 (ENSSSCG00000017529) #29	NFE2L1 (ENSSSCG00000017525) #30	COPZ2 (ENSSSCG00000017526) #32	CDK5RAP3 (ENSSSCG00000017524) #33	PRR15L (ENSSSCG00000054179) #34	PNPO (ENSSSCG00000032782) #35	SP2 (ENSSSCG00000017516) #36	SP6 (ENSSSCG00000017522) #37	SCRN2 (ENSSSCG00000017521)	LRRC46 (ENSSSCG00000017520)
Chacoan peccary	MODERN SPECIES	145	GNGT2 (ENSCWAG00000022039)	ENSCWAG00000022041	IGF2BP1 (ENSCWAG00000022044) #9	GIP (ENSCWAG00000022046) #10	SNF8 (ENSCWAG00000022048) #11	UBE2Z (ENSCWAG00000022050) #12	ATP5MC1 (ENSCWAG00000022052) #13	CALCOCO2 (ENSCWAG00000022056) #14	TTLL6 (ENSCWAG00000022059) #15	HOXB13 (ENSCWAG00000022063) #16	HOXB9 (ENSCWAG00000022065) #17	HOXB8 (ENSCWAG00000022066) #18	HOXB7 (ENSCWAG00000022067) #19	HOXB6 (ENSCWAG00000022069) #20	HOXB5 (ENSCWAG00000022071) #21	HOXB4 (ENSCWAG00000022074) #22	HOXB3 (ENSCWAG00000022077) #23	HOXB2 (ENSCWAG00000022078) #24	HOXB1 (ENSCWAG00000022080) #25	SKAP1 (ENSCWAG00000000046) #27	SNX11 (ENSCWAG00000000070) #28	CBX1 (ENSCWAG00000000121) #29	NFE2L1 (ENSCWAG00000000185) #30	COPZ2 (ENSCWAG00000000341) #32	CDK5RAP3 (ENSCWAG00000000377) #33	PRR15L (ENSCWAG00000000410) #34	PNPO (ENSCWAG00000000427) #35	SP2 (ENSCWAG00000000474) #36	SP6 (ENSCWAG00000000502) #37	SCRN2 (ENSCWAG00000000520)	LRRC46 (ENSCWAG00000000570)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Camelidae	ANCESTRAL SPECIES	60	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.a.a ##29	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Arabian camel	MODERN SPECIES	7	ENSCDRG00005016619	B4GALNT2 (ENSCDRG00005016644) #7	IGF2BP1 (ENSCDRG00005016778) #9	GIP (ENSCDRG00005016991) #10	ENSCDRG00005017040 #11	ENSCDRG00005017061	UBE2Z (ENSCDRG00005017075) #12	ENSCDRG00005017142	CALCOCO2 (ENSCDRG00005017213) #14	TTLL6 (ENSCDRG00005017585) #15	HOXB13 (ENSCDRG00005017741) #16	HOXB9 (ENSCDRG00005017862) #17	HOXB7 (ENSCDRG00005018007) #19	HOXB6 (ENSCDRG00005018029) #20	HOXB5 (ENSCDRG00005018055) #21	HOXB4 (ENSCDRG00005018079) #22	HOXB3 (ENSCDRG00005018104) #23	HOXB2 (ENSCDRG00005018121) #24	HOXB1 (ENSCDRG00005018147) #25	SKAP1 (ENSCDRG00005018166) #27	SNX11 (ENSCDRG00005018232) #28	CBX1 (ENSCDRG00005018330) ##29	NFE2L1 (ENSCDRG00005018357) #30	ENSCDRG00005018515	COPZ2 (ENSCDRG00005018538) #32	CDK5RAP3 (ENSCDRG00005018564) #33	PRR15L (ENSCDRG00005018636) #34	SP2 (ENSCDRG00005018756) #36	SP6 (ENSCDRG00005018791) #37	SCRN2 (ENSCDRG00005018805)	LRRC46 (ENSCDRG00005018865)
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Cetacea	ANCESTRAL SPECIES	5	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.g	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Odontoceti	ANCESTRAL SPECIES	16	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.g	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.g	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.g	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Monodontidae	ANCESTRAL SPECIES	16	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.g	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Beluga whale	MODERN SPECIES	26	GNGT2 (ENSDLEG00000004944)	B4GALNT2 (ENSDLEG00000004906) #7	IGF2BP1 (ENSDLEG00000004887) #9	GIP (ENSDLEG00000004882) #10	SNF8 (ENSDLEG00000004876) #11	UBE2Z (ENSDLEG00000004871) #12	ATP5G1 (ENSDLEG00000004867)	CALCOCO2 (ENSDLEG00000004861) #14	TTLL6 (ENSDLEG00000004850) #15	HOXB13 (ENSDLEG00000004844) #16	HOXB9 (ENSDLEG00000004838) #17	HOXB8 (ENSDLEG00000004837) #18	HOXB7 (ENSDLEG00000004834) #19	HOXB6 (ENSDLEG00000004829) #20	HOXB5 (ENSDLEG00000004826) #21	HOXB4 (ENSDLEG00000004820) #22	HOXB3 (ENSDLEG00000004817) #23	HOXB2 (ENSDLEG00000004813) #24	HOXB1 (ENSDLEG00000004807) #25	SKAP1 (ENSDLEG00000004779) #27	SNX11 (ENSDLEG00000004765) #28	CBX1 (ENSDLEG00000004754) ##29	NFE2L1 (ENSDLEG00000004744) #30	ENSDLEG00000004734	COPZ2 (ENSDLEG00000004721) #32	CDK5RAP3 (ENSDLEG00000004709) #33	PRR15L (ENSDLEG00000004704) #34	PNPO (ENSDLEG00000004701) #35	SP2 (ENSDLEG00000004697) #36	SP6 (ENSDLEG00000004694) #37	SCRN2 (ENSDLEG00000004688)
Narwhal	MODERN SPECIES	316	GNGT2 (ENSMMNG00015022051)	B4GALNT2 (ENSMMNG00015022052) #7	IGF2BP1 (ENSMMNG00015022053) #9	GIP (ENSMMNG00015022055) #10	ENSMMNG00015022056 #11	UBE2Z (ENSMMNG00015022057) #12	ENSMMNG00015022058	CALCOCO2 (ENSMMNG00015022060) #14	TTLL6 (ENSMMNG00015015987) #15	HOXB13 (ENSMMNG00015016080) #16	HOXB9 (ENSMMNG00015016160) #17	HOXB8 (ENSMMNG00015016175) #18	HOXB7 (ENSMMNG00015016197) #19	HOXB6 (ENSMMNG00015016215) #20	HOXB5 (ENSMMNG00015016235) #21	HOXB4 (ENSMMNG00015016252) #22	HOXB3 (ENSMMNG00015016287) #23	HOXB2 (ENSMMNG00015016324) #24	HOXB1 (ENSMMNG00015016356) #25	SKAP1 (ENSMMNG00015016386) #27	SNX11 (ENSMMNG00015016452) #28	CBX1 (ENSMMNG00015016582) #29	NFE2L1 (ENSMMNG00015016634) #30	COPZ2 (ENSMMNG00015016743) #32	CDK5RAP3 (ENSMMNG00015016820) #33	PRR15L (ENSMMNG00015016868) #34	PNPO (ENSMMNG00015016895) #35	SP2 (ENSMMNG00015016948) #36	SP6 (ENSMMNG00015016969) #37	SCRN2 (ENSMMNG00015016985)	LRRC46 (ENSMMNG00015017038)
Vaquita	MODERN SPECIES	12	B4GALNT2 (ENSPSNG00000015839) #7	ENSPSNG00000016103	IGF2BP1 (ENSPSNG00000016168) #9	GIP (ENSPSNG00000016483) #10	SNF8 (ENSPSNG00000016533) #11	UBE2Z (ENSPSNG00000016576) #12	ENSPSNG00000016635	CALCOCO2 (ENSPSNG00000016749) #14	TTLL6 (ENSPSNG00000017015) #15	HOXB13 (ENSPSNG00000017233) #16	HOXB9 (ENSPSNG00000017398) #17	HOXB8 (ENSPSNG00000017436) #18	HOXB7 (ENSPSNG00000017482) #19	HOXB6 (ENSPSNG00000017525) #20	HOXB5 (ENSPSNG00000017559) #21	HOXB4 (ENSPSNG00000017604) #22	HOXB3 (ENSPSNG00000017636) #23	HOXB2 (ENSPSNG00000017708) #24	HOXB1 (ENSPSNG00000017728) #25	SKAP1 (ENSPSNG00000017760) #27	SNX11 (ENSPSNG00000017889) #28	ENSPSNG00000017984 #29	NFE2L1 (ENSPSNG00000018052) #30	COPZ2 (ENSPSNG00000018262) #32	CDK5RAP3 (ENSPSNG00000018321) #33	PRR15L (ENSPSNG00000018399) #34	PNPO (ENSPSNG00000018423) #35	SP2 (ENSPSNG00000018528) #36	SP6 (ENSPSNG00000018568) #37	SCRN2 (ENSPSNG00000018588)	LRRC46 (ENSPSNG00000018676)
Dolphin	MODERN SPECIES	4465											HOXB9 (ENSTTRG00000012262) #17	HOXB8 (ENSTTRG00000012260) #18	ENSTTRG00000012257	HOXB6 (ENSTTRG00000012252) #20	HOXB5 (ENSTTRG00000012251) #21	HOXB4 (ENSTTRG00000012249) #22	HOXB3 (ENSTTRG00000012246) #23	HOXB2 (ENSTTRG00000012244) #24	HOXB1 (ENSTTRG00000012240) #25
Sperm whale	MODERN SPECIES	5	ZNF652 (ENSPCTG00005004307)	B4GALNT2 (ENSPCTG00005004337) #7	IGF2BP1 (ENSPCTG00005004404) #9	GIP (ENSPCTG00005004443) #10	ENSPCTG00005004464	SNF8 (ENSPCTG00005004481) #11	ATP5MC1 (ENSPCTG00005004516) #12	CALCOCO2 (ENSPCTG00005004611) #14	TTLL6 (ENSPCTG00005004739) #15	HOXB13 (ENSPCTG00005004788) #16	HOXB9 (ENSPCTG00005004847) #17	HOXB8 (ENSPCTG00005004864) #18	HOXB7 (ENSPCTG00005004882) #19	HOXB6 (ENSPCTG00005004887) #20	HOXB5 (ENSPCTG00005004905) #21	HOXB4 (ENSPCTG00005004920) #22	HOXB3 (ENSPCTG00005004930) #23	HOXB2 (ENSPCTG00005004951) #24	HOXB1 (ENSPCTG00005004966) #25	SKAP1 (ENSPCTG00005004985) #27	CBX1 (ENSPCTG00005005034) #29	ENSPCTG00005005083 #36	TBX21 (ENSPCTG00005005105)	TBKBP1 (ENSPCTG00005005144)	KPNB1 (ENSPCTG00005005195)	NPEPPS (ENSPCTG00005005245)	GPR179 (ENSPCTG00005005545)	SOCS7 (ENSPCTG00005005634)	ARHGAP23 (ENSPCTG00005005753)	SRCIN1 (ENSPCTG00005005823)	ENSPCTG00005006189
Blue whale	MODERN SPECIES	12	B4GALNT2 (ENSBMSG00010016748) #7	IGF2BP1 (ENSBMSG00010016894) #9	GIP (ENSBMSG00010017026) #10	SNF8 (ENSBMSG00010017067) #11	UBE2Z (ENSBMSG00010017102) #12	ATP5MC1 (ENSBMSG00010017142) #13	ENSBMSG00010017179	CALCOCO2 (ENSBMSG00010017255) #14	TTLL6 (ENSBMSG00010017444) #15	HOXB13 (ENSBMSG00010017547) #16	HOXB9 (ENSBMSG00010017655) #17	HOXB8 (ENSBMSG00010017685) #18	HOXB7 (ENSBMSG00010017724) #19	HOXB6 (ENSBMSG00010017746) #20	HOXB5 (ENSBMSG00010017772) #21	HOXB4 (ENSBMSG00010017814) #22	HOXB3 (ENSBMSG00010017838) #23	HOXB2 (ENSBMSG00010017860) #24	HOXB1 (ENSBMSG00010017892) #25	SKAP1 (ENSBMSG00010017921) #27	SNX11 (ENSBMSG00010018006) #28	CBX1 (ENSBMSG00010018099) #29	NFE2L1 (ENSBMSG00010018163) #30	COPZ2 (ENSBMSG00010018306) #32	CDK5RAP3 (ENSBMSG00010018481) #33	PRR15L (ENSBMSG00010018513) #34	PNPO (ENSBMSG00010018544) #35	SP2 (ENSBMSG00010018607) #36	SP6 (ENSBMSG00010018628) #37	ENSBMSG00010018650	ENSBMSG00010018673
Pecora	ANCESTRAL SPECIES	1	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00950000185410	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Yarkand deer	MODERN SPECIES	28	B4GALNT2 (ENSCHYG00000004351) #7	IGF2BP1 (ENSCHYG00000004387) #9	GIP (ENSCHYG00000004425) #10	SNF8 (ENSCHYG00000004443) #11	UBE2Z (ENSCHYG00000004456) #12	ENSCHYG00000004476	ENSCHYG00000004493	ENSCHYG00000004521 #14	TTLL6 (ENSCHYG00000004571) #15	HOXB13 (ENSCHYG00000004599) #16	HOXB9 (ENSCHYG00000004623) #17	HOXB8 (ENSCHYG00000004637) #18	HOXB7 (ENSCHYG00000004645) #19	HOXB6 (ENSCHYG00000004651) #20	HOXB5 (ENSCHYG00000004658) #21	HOXB4 (ENSCHYG00000004668) #22	HOXB3 (ENSCHYG00000004670) #23	HOXB2 (ENSCHYG00000004674) #24	HOXB1 (ENSCHYG00000004684) #25	SKAP1 (ENSCHYG00000004692) #27	ENSCHYG00000004720	SNX11 (ENSCHYG00000004737) #28	CBX1 (ENSCHYG00000004750) #29	NFE2L1 (ENSCHYG00000004781) #30	COPZ2 (ENSCHYG00000004829) #32	ENSCHYG00000004851	CDK5RAP3 (ENSCHYG00000000101) #33	PRR15L (ENSCHYG00000000125) #34	PNPO (ENSCHYG00000000157) #35	SP2 (ENSCHYG00000000198) #36	SP6 (ENSCHYG00000000221) #37
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Siberian musk deer	MODERN SPECIES	1210	B4GALNT2 (ENSMMSG00000024496) #7	ENSMMSG00000024500	IGF2BP1 (ENSMMSG00000024501) #9	GIP (ENSMMSG00000024503) #10	ENSMMSG00000024504 #11	UBE2Z (ENSMMSG00000024505) #12	ATP5MC1 (ENSMMSG00000024506) #13	CALCOCO2 (ENSMMSG00000024509) #14	TTLL6 (ENSMMSG00000024514) #15	HOXB13 (ENSMMSG00000024516) #16	HOXB9 (ENSMMSG00000024520) #17	HOXB8 (ENSMMSG00000024522) #18	HOXB7 (ENSMMSG00000024523) #19	HOXB6 (ENSMMSG00000024525) #20	HOXB5 (ENSMMSG00000024526) #21	HOXB4 (ENSMMSG00000024528) #22	ENSMMSG00000024530	HOXB3 (ENSMMSG00000024531) #23	HOXB2 (ENSMMSG00000024532) #24	HOXB1 (ENSMMSG00000024533) #25	ENSMMSG00000024535	SKAP1 (ENSMMSG00000024536) #27	SNX11 (ENSMMSG00000024538) #28	CBX1 (ENSMMSG00000024540) #29	NFE2L1 (ENSMMSG00000024541) #30	COPZ2 (ENSMMSG00000024546) #32	CDK5RAP3 (ENSMMSG00000024548) #33	PRR15L (ENSMMSG00000024549) #34	PNPO (ENSMMSG00000024550) #35	SP2 (ENSMMSG00000024551) #36	SP6 (ENSMMSG00000018224) #37
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Caprinae	ANCESTRAL SPECIES	1	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.g.a #11	ENSGT01100000264599	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154688.b.j	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Rambouillet Sheep	MODERN SPECIES	2	B4GALNT2 (ENSOARG00020022870) #7	ENSOARG00020022839	IGF2BP1 (ENSOARG00020022766) #9	GIP (ENSOARG00020022695) #10	UBE2Z (ENSOARG00020022664) #12	ATP5MC1 (ENSOARG00020022590)	CALCOCO2 (ENSOARG00020022295) #14	ENSOARG00020022258 #15	SNF8 (ENSOARG00020022227) #11	HOXB13 (ENSOARG00020022195) #16	HOXB9 (ENSOARG00020022138) #17	HOXB8 (ENSOARG00020022064) #18	HOXB7 (ENSOARG00020022042) #19	HOXB6 (ENSOARG00020022021) #20	HOXB5 (ENSOARG00020022004) #21	HOXB4 (ENSOARG00020021954) #22	HOXB3 (ENSOARG00020021943) #23	HOXB2 (ENSOARG00020021907) #24	HOXB1 (ENSOARG00020021886) #25	SKAP1 (ENSOARG00020021817) #27	SNX11 (ENSOARG00020021783) #28	CBX1 (ENSOARG00020021741) #29	NFE2L1 (ENSOARG00020021460) #30	COPZ2 (ENSOARG00020021377) #32	CDK5RAP3 (ENSOARG00020021339) #33	PRR15L (ENSOARG00020021319) #34	PNPO (ENSOARG00020021017) #35	SP2 (ENSOARG00020020972) #36	SP6 (ENSOARG00020020944) #37	SCRN2 (ENSOARG00020020770)	LRRC46 (ENSOARG00020020663)
Goat	MODERN SPECIES	10	B4GALNT2 (ENSCHIG00000013924) #7	IGF2BP1 (ENSCHIG00000022316) #9	GIP (ENSCHIG00000010936) #10	SNF8 (ENSCHIG00000014794) #11	ENSCHIG00000020962	UBE2Z (ENSCHIG00000003883) #12	ENSCHIG00000016881	CALCOCO2 (ENSCHIG00000025313) #14	TTLL6 (ENSCHIG00000022654) #15	HOXB13 (ENSCHIG00000026703) #16	HOXB9 (ENSCHIG00000022791) #17	HOXB8 (ENSCHIG00000015504) #18	HOXB7 (ENSCHIG00000017532) #19	HOXB6 (ENSCHIG00000008881) #20	HOXB5 (ENSCHIG00000023147) #21	HOXB4 (ENSCHIG00000025323) #22	HOXB3 (ENSCHIG00000013978) #23	HOXB2 (ENSCHIG00000025836) #24	HOXB1 (ENSCHIG00000017872) #25	ENSCHIG00000010180	ENSCHIG00000015920 #27	ENSCHIG00000026878 #27	SNX11 (ENSCHIG00000017547) #28	CBX1 (ENSCHIG00000010985) #29	NFE2L1 (ENSCHIG00000015427) #30	COPZ2 (ENSCHIG00000026544) #32	CDK5RAP3 (ENSCHIG00000025420) #33	PRR15L (ENSCHIG00000008261) #34	PNPO (ENSCHIG00000004606) #35	SP2 (ENSCHIG00000018648) #36	SP6 (ENSCHIG00000009897) #37
Bovinae	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
American bison	MODERN SPECIES	3101	ABI3 (ENSBBBG00000021279)	GNGT2 (ENSBBBG00000021294)	B4GALNT2 (ENSBBBG00000021305) #7	IGF2BP1 (ENSBBBG00000021334) #9	GIP (ENSBBBG00000021349) #10	SNF8 (ENSBBBG00000021356) #11	UBE2Z (ENSBBBG00000021371) #12	ATP5MC1 (ENSBBBG00000021377) #13	CALCOCO2 (ENSBBBG00000005726) #14	TTLL6 (ENSBBBG00000021540) #15	HOXB13 (ENSBBBG00000021546) #16	HOXB9 (ENSBBBG00000021558) #17	HOXB7 (ENSBBBG00000021565) #19	HOXB6 (ENSBBBG00000021567) #20	HOXB5 (ENSBBBG00000021577) #21	HOXB4 (ENSBBBG00000021585) #22	HOXB3 (ENSBBBG00000005740) #23	HOXB2 (ENSBBBG00000021598) #24	HOXB1 (ENSBBBG00000021601) #25	SKAP1 (ENSBBBG00000021634) #27	SNX11 (ENSBBBG00000021652) #28	ENSBBBG00000021675 ##29	NFE2L1 (ENSBBBG00000021740) #30	COPZ2 (ENSBBBG00000021782) #32	CDK5RAP3 (ENSBBBG00000021808) #33	PRR15L (ENSBBBG00000021809) #34	PNPO (ENSBBBG00000021862) #35	SP2 (ENSBBBG00000021914) #36	SP6 (ENSBBBG00000021924) #37	SCRN2 (ENSBBBG00000021958)	LRRC46 (ENSBBBG00000021972)
Bos	ANCESTRAL SPECIES	1	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.i #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.e.b #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Bos_b	ANCESTRAL SPECIES	15	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.i #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.e.b #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Hybrid Bos Indicus	MODERN SPECIES	10	ABI3 (ENSBIXG00005007948)	B4GALNT2 (ENSBIXG00005007929) #7	IGF2BP1 (ENSBIXG00005007917) #9	GIP (ENSBIXG00005007892) #10	SNF8 (ENSBIXG00005007866) #11	UBE2Z (ENSBIXG00005029277) #12	ENSBIXG00005029305	CALCOCO2 (ENSBIXG00005029366) #14	ENSBIXG00005029447 #15	HOXB13 (ENSBIXG00005029474) #16	HOXB9 (ENSBIXG00005029519) #17	HOXB8 (ENSBIXG00005029530) #18	HOXB7 (ENSBIXG00005029546) #19	HOXB6 (ENSBIXG00005029554) #20	HOXB5 (ENSBIXG00005029559) #21	HOXB4 (ENSBIXG00005029577) #22	HOXB3 (ENSBIXG00005029591) #23	HOXB2 (ENSBIXG00005029607) #24	HOXB1 (ENSBIXG00005029618) #25	ENSBIXG00005029636	SKAP1 (ENSBIXG00005029657) #27	SNX11 (ENSBIXG00005029679) #28	CBX1 (ENSBIXG00005029691) #29	NFE2L1 (ENSBIXG00005029748) #30	COPZ2 (ENSBIXG00005029862) #32	CDK5RAP3 (ENSBIXG00005029886) #33	PRR15L (ENSBIXG00005029905) #34	PNPO (ENSBIXG00005029918) #35	ENSBIXG00005029934 #36	SP6 (ENSBIXG00005029948) #37	SCRN2 (ENSBIXG00005029976)
Cow	MODERN SPECIES	10	GNGT2 (ENSBTAG00000047325)	B4GALNT2 (ENSBTAG00000009864) #7	IGF2BP1 (ENSBTAG00000011736) #9	GIP (ENSBTAG00000005045) #10	SNF8 (ENSBTAG00000018803) #11	UBE2Z (ENSBTAG00000018802) #12	ATP5MC1 (ENSBTAG00000018339)	CALCOCO2 (ENSBTAG00000007935) #14	TTLL6 (ENSBTAG00000009332) #15	HOXB13 (ENSBTAG00000014663) #16	HOXB9 (ENSBTAG00000054623) #17	HOXB8 (ENSBTAG00000054162) #18	HOXB7 (ENSBTAG00000005546) #19	HOXB6 (ENSBTAG00000050006) #20	HOXB5 (ENSBTAG00000045835) #21	HOXB4 (ENSBTAG00000039599) #22	HOXB3 (ENSBTAG00000021427) #23	HOXB2 (ENSBTAG00000009979) #24	HOXB1 (ENSBTAG00000007603) #25	SKAP1 (ENSBTAG00000000641) #27	SNX11 (ENSBTAG00000020321) #28	CBX1 (ENSBTAG00000002949) #29	NFE2L1 (ENSBTAG00000013653) #30	COPZ2 (ENSBTAG00000039954) #32	CDK5RAP3 (ENSBTAG00000014202) #33	PRR15L (ENSBTAG00000012249) #34	PNPO (ENSBTAG00000012259) #35	SP2 (ENSBTAG00000013740) #36	SP6 (ENSBTAG00000001825) #37	SCRN2 (ENSBTAG00000001828)	LRRC46 (ENSBTAG00000001830)
Bos_a	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b.i #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.e.b #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Wild yak	MODERN SPECIES	319	GNGT2 (ENSBMUG00000000436)	B4GALNT2 (ENSBMUG00000000477) #7	IGF2BP1 (ENSBMUG00000000549) #9	GIP (ENSBMUG00000000594) #10	SNF8 (ENSBMUG00000000607) #11	UBE2Z (ENSBMUG00000000624) #12	ENSBMUG00000000644	CALCOCO2 (ENSBMUG00000000720) #14	ENSBMUG00000000753 #15	HOXB13 (ENSBMUG00000000770) #16	HOXB9 (ENSBMUG00000000804) #17	HOXB8 (ENSBMUG00000000824) #18	HOXB7 (ENSBMUG00000000832) #19	HOXB6 (ENSBMUG00000000839) #20	HOXB5 (ENSBMUG00000000849) #21	HOXB4 (ENSBMUG00000000867) #22	HOXB3 (ENSBMUG00000000876) #23	HOXB2 (ENSBMUG00000000885) #24	HOXB1 (ENSBMUG00000000891) #25	ENSBMUG00000000901	SKAP1 (ENSBMUG00000000925) #27	SNX11 (ENSBMUG00000000953) #28	CBX1 (ENSBMUG00000000974) #29	NFE2L1 (ENSBMUG00000001054) #30	COPZ2 (ENSBMUG00000001081) #32	CDK5RAP3 (ENSBMUG00000001110) #33	ENSBMUG00000001125 #34	PNPO (ENSBMUG00000001160) #35	SP2 (ENSBMUG00000001179) #36
Domestic yak	MODERN SPECIES	10	PHOSPHO1 (ENSBGRG00000023170)	ABI3 (ENSBGRG00000022961)	B4GALNT2 (ENSBGRG00000022672) #7	IGF2BP1 (ENSBGRG00000022442) #9	GIP (ENSBGRG00000022397) #10	SNF8 (ENSBGRG00000022296) #11	UBE2Z (ENSBGRG00000022223) #12	ENSBGRG00000022156	CALCOCO2 (ENSBGRG00000021810) #14	TTLL6 (ENSBGRG00000021744) #15	HOXB13 (ENSBGRG00000021718) #16	HOXB9 (ENSBGRG00000021683) #17	HOXB8 (ENSBGRG00000021618) #18	HOXB6 (ENSBGRG00000021579) #20	HOXB5 (ENSBGRG00000021555) #21	HOXB4 (ENSBGRG00000021501) #22	HOXB3 (ENSBGRG00000021464) #23	HOXB2 (ENSBGRG00000021425) #24	HOXB1 (ENSBGRG00000021404) #25	SKAP1 (ENSBGRG00000021202) #27	SNX11 (ENSBGRG00000021141) #28	CBX1 (ENSBGRG00000021062) #29	NFE2L1 (ENSBGRG00000020783) #30	COPZ2 (ENSBGRG00000020574) #32	CDK5RAP3 (ENSBGRG00000020283) #33	ENSBGRG00000020194 #34	PNPO (ENSBGRG00000019898) #35	ENSBGRG00000019774 #36	SP6 (ENSBGRG00000019744) #37	SCRN2 (ENSBGRG00000019672)	LRRC46 (ENSBGRG00000019490)
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.b	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Chiroptera	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.b	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Microchiroptera	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.b	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Greater horseshoe bat	MODERN SPECIES	13	ENSRFEG00010021705	IGF2BP1 (ENSRFEG00010021720) #9	GIP (ENSRFEG00010021740) #10	SNF8 (ENSRFEG00010021745) #11	UBE2Z (ENSRFEG00010021755) #12	ENSRFEG00010021766	CALCOCO2 (ENSRFEG00010021784) #14	ENSRFEG00010021798	TTLL6 (ENSRFEG00010021801) #15	HOXB13 (ENSRFEG00010021808) #16	HOXB9 (ENSRFEG00010021814) #17	HOXB8 (ENSRFEG00010021818) #18	HOXB7 (ENSRFEG00010021823) #19	HOXB6 (ENSRFEG00010021831) #20	HOXB5 (ENSRFEG00010021836) #21	HOXB4 (ENSRFEG00010021844) #22	ENSRFEG00010021849	HOXB3 (ENSRFEG00010021853) #23	HOXB2 (ENSRFEG00010021859) #24	HOXB1 (ENSRFEG00010021864) #25	SKAP1 (ENSRFEG00010021866) #27	SNX11 (ENSRFEG00010021879) #28	CBX1 (ENSRFEG00010021893) #29	NFE2L1 (ENSRFEG00010021900) #30	COPZ2 (ENSRFEG00010021918) #32	CDK5RAP3 (ENSRFEG00010021928) #33	PRR15L (ENSRFEG00010021936) #34	PNPO (ENSRFEG00010021942) #35	SP2 (ENSRFEG00010021950) #36	SP6 (ENSRFEG00010021957) #37	SCRN2 (ENSRFEG00010021961)
Megabat	MODERN SPECIES	334									HOXB13 (ENSPVAG00000015531) #16	ENSPVAG00000015530	HOXB8 (ENSPVAG00000015529) #18	HOXB7 (ENSPVAG00000015528) #19	ENSPVAG00000015526	HOXB6 (ENSPVAG00000015525) #20	HOXB5 (ENSPVAG00000015524) #21	HOXB4 (ENSPVAG00000015523) #22	HOXB3 (ENSPVAG00000015522) #23	ENSPVAG00000015521 #24	HOXB1 (ENSPVAG00000015520) #25	SKAP1 (ENSPVAG00000015519) #27	SNX11 (ENSPVAG00000015518) #28
Equus	ANCESTRAL SPECIES		ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.b	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Horse	MODERN SPECIES	2	GNGT2 (ENSECAG00000016054)	B4GALNT2 (ENSECAG00000013354) #7	IGF2BP1 (ENSECAG00000009723) #9	GIP (ENSECAG00000008172) #10	ENSECAG00000046431	SNF8 (ENSECAG00000022092) #11	UBE2Z (ENSECAG00000021160) #12	ATP5MC1 (ENSECAG00000019908)	CALCOCO2 (ENSECAG00000015498) #14	ENSECAG00000059603 #15	TTLL6 (ENSECAG00000014417) #15	HOXB13 (ENSECAG00000013619) #16	HOXB9 (ENSECAG00000036001) #17	HOXB8 (ENSECAG00000034473) #19	HOXB5 (ENSECAG00000012439) #21	HOXB4 (ENSECAG00000028576) #22	HOXB3 (ENSECAG00000002707) #23	HOXB2 (ENSECAG00000012423) #24	HOXB1 (ENSECAG00000011628) #25	SKAP1 (ENSECAG00000010544) #27	SNX11 (ENSECAG00000008117) #28	CBX1 (ENSECAG00000008048) #29	NFE2L1 (ENSECAG00000007777) #30	COPZ2 (ENSECAG00000024471) #32	CDK5RAP3 (ENSECAG00000018688) #33	PRR15L (ENSECAG00000002658) #34	PNPO (ENSECAG00000014995) #35	SP2 (ENSECAG00000012859) #36	SP6 (ENSECAG00000012853) #37	SCRN2 (ENSECAG00000009826)	LRRC46 (ENSECAG00000007543)
Carnivora	ANCESTRAL SPECIES	9	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Felidae	ANCESTRAL SPECIES	8	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.f.a	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000013771.p	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Panthera	ANCESTRAL SPECIES	14	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.f.a	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000013771.p	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00940000154534.a #34	ENSGT00390000000713 #33	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37
Tiger	MODERN SPECIES	230	PHB1 (ENSPTIG00000008349)	ZNF652 (ENSPTIG00000010615)	ABI3 (ENSPTIG00000011177)	GNGT2 (ENSPTIG00000011802)	B4GALNT2 (ENSPTIG00000012803) #7	IGF2BP1 (ENSPTIG00000013291) #9	GIP (ENSPTIG00000016604) #10	SNF8 (ENSPTIG00000017017) #11	UBE2Z (ENSPTIG00000017872) #12	ENSPTIG00000018508	CALCOCO2 (ENSPTIG00000020855) #14	TTLL6 (ENSPTIG00000010570) #15	ENSPTIG00000013326 #16	HOXB7 (ENSPTIG00000014471) #19	HOXB5 (ENSPTIG00000014877) #21	HOXB4 (ENSPTIG00000014995) #22	HOXB2 (ENSPTIG00000015306) #24	HOXB1 (ENSPTIG00000015694) #25	SKAP1 (ENSPTIG00000016493) #27	SNX11 (ENSPTIG00000018316) #28	CBX1 (ENSPTIG00000020896) ##29	NFE2L1 (ENSPTIG00000021715) #30	ENSPTIG00000007047	COPZ2 (ENSPTIG00000007508) #32	CDK5RAP3 (ENSPTIG00000009086) #33	PNPO (ENSPTIG00000012157) #35	SP2 (ENSPTIG00000014873) #36	SCRN2 (ENSPTIG00000016232)	LRRC46 (ENSPTIG00000018466)	MRPL10 (ENSPTIG00000018968)	ENSPTIG00000019388
Panthera_a	ANCESTRAL SPECIES	13	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.f.a	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000013771.p	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00940000154534.a #34	ENSGT00390000000713 #33	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
leopard	MODERN SPECIES	67	GNGT2 (ENSPPRG00000009442)	B4GALNT2 (ENSPPRG00000008636) #7	IGF2BP1 (ENSPPRG00000008067) #9	GIP (ENSPPRG00000007119) #10	ENSPPRG00000007008 #11	UBE2Z (ENSPPRG00000005626) #12	ENSPPRG00000005588	CALCOCO2 (ENSPPRG00000004550) #14	TTLL6 (ENSPPRG00000003004) #15	HOXB13 (ENSPPRG00000001633) #16	HOXB9 (ENSPPRG00000001578) #17	HOXB8 (ENSPPRG00000001156) #18	HOXB7 (ENSPPRG00000000666) #19	HOXB6 (ENSPPRG00000000532) #20	HOXB5 (ENSPPRG00000000333) #21	HOXB4 (ENSPPRG00000000220) #22	HOXB3 (ENSPPRG00000022415) #23	HOXB2 (ENSPPRG00000020926) #24	HOXB1 (ENSPPRG00000017656) #25	ENSPPRG00000017115	ENSPPRG00000016613	SKAP1 (ENSPPRG00000015336) #27	SNX11 (ENSPPRG00000012061) #28	CBX1 (ENSPPRG00000009475) #29	NFE2L1 (ENSPPRG00000009101) #30	COPZ2 (ENSPPRG00000006801) #32	CDK5RAP3 (ENSPPRG00000006376) #33	PNPO (ENSPPRG00000005037) #35	SP2 (ENSPPRG00000003332) #36	SP6 (ENSPPRG00000016089) #37	SCRN2 (ENSPPRG00000002730)
lion	MODERN SPECIES	14	B4GALNT2 (ENSPLOG00000021030) #7	IGF2BP1 (ENSPLOG00000021207) #9	GIP (ENSPLOG00000021311) #10	SNF8 (ENSPLOG00000021370) #11	UBE2Z (ENSPLOG00000021399) #12	ENSPLOG00000021422	CALCOCO2 (ENSPLOG00000021469) #14	TTLL6 (ENSPLOG00000021506) #15	HOXB13 (ENSPLOG00000021590) #16	ENSPLOG00000021606	HOXB9 (ENSPLOG00000021630) #17	HOXB8 (ENSPLOG00000021645) #18	HOXB7 (ENSPLOG00000021659) #19	HOXB6 (ENSPLOG00000021669) #20	HOXB5 (ENSPLOG00000021683) #21	HOXB4 (ENSPLOG00000021697) #22	HOXB3 (ENSPLOG00000021711) #23	HOXB2 (ENSPLOG00000021733) #24	HOXB1 (ENSPLOG00000021742) #25	ENSPLOG00000021761	SKAP1 (ENSPLOG00000021790) #27	SNX11 (ENSPLOG00000021872) #28	CBX1 (ENSPLOG00000021907) #29	NFE2L1 (ENSPLOG00000021931) #30	COPZ2 (ENSPLOG00000021972) #32	CDK5RAP3 (ENSPLOG00000022033) #33	PRR15L (ENSPLOG00000022093) #34	SP2 (ENSPLOG00000022101) #36	SP6 (ENSPLOG00000022115) #37	SCRN2 (ENSPLOG00000022130)	LRRC46 (ENSPLOG00000005433)
Cat	MODERN SPECIES	245	GNGT2 (ENSFCAG00000039268)	B4GALNT2 (ENSFCAG00000018523) #7	IGF2BP1 (ENSFCAG00000002454) #9	GIP (ENSFCAG00000008946) #10	SNF8 (ENSFCAG00000008944) #11	UBE2Z (ENSFCAG00000045462) #12	ENSFCAG00000002344	CALCOCO2 (ENSFCAG00000010622) #14	TTLL6 (ENSFCAG00000010617) #15	HOXB13 (ENSFCAG00000002120) #16	HOXB9 (ENSFCAG00000035234) #17	HOXB8 (ENSFCAG00000036979) #18	HOXB7 (ENSFCAG00000002118) #19	HOXB6 (ENSFCAG00000034768) #20	HOXB5 (ENSFCAG00000039068) #21	HOXB4 (ENSFCAG00000051422) #22	HOXB3 (ENSFCAG00000006408) #23	HOXB2 (ENSFCAG00000045039) #24	HOXB1 (ENSFCAG00000028151) #25	ENSFCAG00000034133	SKAP1 (ENSFCAG00000004784) #27	SNX11 (ENSFCAG00000009371) #28	CBX1 (ENSFCAG00000006056) ##29	NFE2L1 (ENSFCAG00000009369) #30	COPZ2 (ENSFCAG00000034233) #32	CDK5RAP3 (ENSFCAG00000009367) #33	PRR15L (ENSFCAG00000009366) #34	PNPO (ENSFCAG00000001300) #35	SP2 (ENSFCAG00000009365) #36	SP6 (ENSFCAG00000009363) #37	SCRN2 (ENSFCAG00000009362)
Caniformia	ANCESTRAL SPECIES	6	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Ursidae	ANCESTRAL SPECIES	18	ENSGT01100000263525.b.a.b	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Giant Panda	MODERN SPECIES	4	B4GALNT2 (ENSAMEG00000005108) #7	IGF2BP1 (ENSAMEG00000005087) #9	GIP (ENSAMEG00000005081) #10	SNF8 (ENSAMEG00000005062) #11	UBE2Z (ENSAMEG00000005049) #12	ATP5MC1 (ENSAMEG00000005038)	CALCOCO2 (ENSAMEG00000005015) #14	ENSAMEG00000005000 #15	HOXB13 (ENSAMEG00000026873) #16	ENSAMEG00000026258	HOXB9 (ENSAMEG00000024921) #17	ENSAMEG00000004982 #18	HOXB7 (ENSAMEG00000004977) #19	HOXB6 (ENSAMEG00000004971) #20	HOXB5 (ENSAMEG00000004967) #21	HOXB4 (ENSAMEG00000028329) #22	HOXB3 (ENSAMEG00000027375) #23	HOXB2 (ENSAMEG00000030987) #24	HOXB1 (ENSAMEG00000004935) #25	SKAP1 (ENSAMEG00000004919) #27	SNX11 (ENSAMEG00000004898) #28	CBX1 (ENSAMEG00000004890) #29	NFE2L1 (ENSAMEG00000004881) #30	COPZ2 (ENSAMEG00000004850) #32	ENSAMEG00000030152	CDK5RAP3 (ENSAMEG00000004818) #33	PRR15L (ENSAMEG00000025744) #34	PNPO (ENSAMEG00000004786) #35	SP2 (ENSAMEG00000004772) #36	SCRN2 (ENSAMEG00000004751)	LRRC46 (ENSAMEG00000004734)
Ursus	ANCESTRAL SPECIES	67	ENSGT01100000263525.b.a.b	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
American black bear	MODERN SPECIES	3149										HOXB13 (ENSUAMG00000021914) #16	HOXB9 (ENSUAMG00000021910) #17	HOXB8 (ENSUAMG00000021909) #18	HOXB7 (ENSUAMG00000021908) #19	HOXB6 (ENSUAMG00000021905) #20	HOXB5 (ENSUAMG00000021904) #21	HOXB4 (ENSUAMG00000021902) #22
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00990000209473	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00950000185410	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
American mink	MODERN SPECIES	92	B4GALNT2 (ENSNVIG00000006432) #7	IGF2BP1 (ENSNVIG00000006377) #9	GIP (ENSNVIG00000006361) #10	ENSNVIG00000006352 #11	ENSNVIG00000006339	UBE2Z (ENSNVIG00000006316) #12	ENSNVIG00000006295	CALCOCO2 (ENSNVIG00000006167) #14	TTLL6 (ENSNVIG00000006132) #15	HOXB13 (ENSNVIG00000006117) #16	HOXB9 (ENSNVIG00000006082) #17	HOXB8 (ENSNVIG00000006066) #18	HOXB7 (ENSNVIG00000006060) #19	HOXB6 (ENSNVIG00000006053) #20	HOXB5 (ENSNVIG00000006049) #21	HOXB4 (ENSNVIG00000006040) #22	HOXB3 (ENSNVIG00000006032) #23	HOXB2 (ENSNVIG00000006024) #24	HOXB1 (ENSNVIG00000006017) #25	ENSNVIG00000006009	SKAP1 (ENSNVIG00000005974) #27	SNX11 (ENSNVIG00000005959) #28	CBX1 (ENSNVIG00000005946) #29	NFE2L1 (ENSNVIG00000005857) #30	ENSNVIG00000005842	COPZ2 (ENSNVIG00000005837) #32	CDK5RAP3 (ENSNVIG00000005742) #33	PR15L (ENSNVIG00000005731) #34	PNPO (ENSNVIG00000005692) #35	SP2 (ENSNVIG00000005673) #36	SP6 (ENSNVIG00000005667) #37
Ferret	MODERN SPECIES	270	ABI3 (ENSMPUG00000015374)	B4GALNT2 (ENSMPUG00000015373) #7	IGF2BP1 (ENSMPUG00000015358) #9	GIP (ENSMPUG00000015357) #10	SNF8 (ENSMPUG00000015356) #11	UBE2Z (ENSMPUG00000015342) #12	ENSMPUG00000015341	CALCOCO2 (ENSMPUG00000015338) #14	TTLL6 (ENSMPUG00000015335) #15	HOXB13 (ENSMPUG00000015332) #16	HOXB9 (ENSMPUG00000015330) #17	HOXB8 (ENSMPUG00000015329) #18	HOXB7 (ENSMPUG00000015328) #19	HOXB6 (ENSMPUG00000015322) #20	HOXB5 (ENSMPUG00000015316) #21	HOXB4 (ENSMPUG00000015310) #22	HOXB2 (ENSMPUG00000015309) #24	HOXB1 (ENSMPUG00000015307) #25	SKAP1 (ENSMPUG00000015305) #27	SNX11 (ENSMPUG00000015303) #28	CBX1 (ENSMPUG00000015302) ##29	NFE2L1 (ENSMPUG00000015301) #30	COPZ2 (ENSMPUG00000015292) #32	CDK5RAP3 (ENSMPUG00000015291) #33	PRR15L (ENSMPUG00000020087) #34	PNPO (ENSMPUG00000015290) #35	SP2 (ENSMPUG00000015289) #36	SP6 (ENSMPUG00000020086) #37	SCRN2 (ENSMPUG00000015288)	LRRC46 (ENSMPUG00000015287)	MRPL10 (ENSMPUG00000015278)
Canidae	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.c	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Red fox	MODERN SPECIES	20	B4GALNT2 (ENSVVUG00000003458) #7	ENSVVUG00000003456	IGF2BP1 (ENSVVUG00000003451) #9	GIP (ENSVVUG00000003440) #10	SNF8 (ENSVVUG00000003434) #11	UBE2Z (ENSVVUG00000003424) #12	ATP5MC1 (ENSVVUG00000003411)	CALCOCO2 (ENSVVUG00000003399) #14	TTLL6 (ENSVVUG00000003393) #15	HOXB13 (ENSVVUG00000003382) #16	HOXB9 (ENSVVUG00000003367) #17	HOXB8 (ENSVVUG00000003366) #18	HOXB7 (ENSVVUG00000003360) #19	HOXB6 (ENSVVUG00000003359) #20	HOXB5 (ENSVVUG00000003354) #21	ENSVVUG00000003340 #22	HOXB3 (ENSVVUG00000003329) #23	HOXB2 (ENSVVUG00000003328) #24	HOXB1 (ENSVVUG00000003325) #25	SKAP1 (ENSVVUG00000003297) #27	SNX11 (ENSVVUG00000003276) #28	ENSVVUG00000003272 #29	NFE2L1 (ENSVVUG00000003262) #30	COPZ2 (ENSVVUG00000003249) #32	CDK5RAP3 (ENSVVUG00000003227) #33	PRR15L (ENSVVUG00000003218) #34	PNPO (ENSVVUG00000003178) #35	SP2 (ENSVVUG00000003171) #36	SP6 (ENSVVUG00000003167) #37	SCRN2 (ENSVVUG00000003154)	LRRC46 (ENSVVUG00000003146)
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720.c	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d.b #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Dog	MODERN SPECIES	37	ENSCAFG00845010742	B4GALNT2 (ENSCAFG00845010693) #7	IGF2BP1 (ENSCAFG00845010596) #9	GIP (ENSCAFG00845010532) #10	SNF8 (ENSCAFG00845010455) #11	UBE2Z (ENSCAFG00845010395) #12	ATP5MC1 (ENSCAFG00845010336)	CALCOCO2 (ENSCAFG00845010119) #14	TTLL6 (ENSCAFG00845010017) #15	HOXB13 (ENSCAFG00845009992) #16	HOXB9 (ENSCAFG00845009956) #17	HOXB8 (ENSCAFG00845009931) #18	HOXB7 (ENSCAFG00845009899) #19	HOXB6 (ENSCAFG00845009871) #20	HOXB5 (ENSCAFG00845009832) #21	HOXB4 (ENSCAFG00845017264) #22	HOXB3 (ENSCAFG00845017188) #23	HOXB2 (ENSCAFG00845017142) #24	HOXB1 (ENSCAFG00845017096) #25	SKAP1 (ENSCAFG00845016959) #27	SNX11 (ENSCAFG00845016720) #28	CBX1 (ENSCAFG00845016596) #29	NFE2L1 (ENSCAFG00845016388) #30	COPZ2 (ENSCAFG00845016156) #32	CDK5RAP3 (ENSCAFG00845016051) #33	ENSCAFG00845016000	PRR15L (ENSCAFG00845015978) #34	PNPO (ENSCAFG00845015876) #35	SP2 (ENSCAFG00845015786) #36	SP6 (ENSCAFG00845015746) #37	SCRN2 (ENSCAFG00845015686)
Dingo	MODERN SPECIES	150	B4GALNT2 (ENSCAFG00020023386) #7	ENSCAFG00020023382	IGF2BP1 (ENSCAFG00020023369) #9	GIP (ENSCAFG00020023360) #10	SNF8 (ENSCAFG00020023354) #11	UBE2Z (ENSCAFG00020023351) #12	ENSCAFG00020023349	CALCOCO2 (ENSCAFG00020023334) #14	TTLL6 (ENSCAFG00020023324) #15	HOXB13 (ENSCAFG00020023319) #16	HOXB9 (ENSCAFG00020023312) #17	HOXB8 (ENSCAFG00020023306) #18	ENSCAFG00020023303 #19	HOXB6 (ENSCAFG00020023302) #20	HOXB5 (ENSCAFG00020023301) #21	HOXB4 (ENSCAFG00020023297) #22	HOXB3 (ENSCAFG00020023294) #23	HOXB2 (ENSCAFG00020023293) #24	HOXB1 (ENSCAFG00020023290) #25	SKAP1 (ENSCAFG00020023287) #27	SNX11 (ENSCAFG00020023282) #28	CBX1 (ENSCAFG00020023275) #29	NFE2L1 (ENSCAFG00020023270) #30	COPZ2 (ENSCAFG00020023263) #32	CDK5RAP3 (ENSCAFG00020023258) #33	PRR15L (ENSCAFG00020023256) #34	PNPO (ENSCAFG00020023249) #35	SP2 (ENSCAFG00020023246) #36	SP6 (ENSCAFG00020023243) #37	SCRN2 (ENSCAFG00020023238)	LRRC46 (ENSCAFG00020023236)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Afrotheria	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Elephant	MODERN SPECIES	310	IGF2BP1 (ENSLAFG00000002048) #9	GIP (ENSLAFG00000004536) #10	SNF8 (ENSLAFG00000006599) #11	UBE2Z (ENSLAFG00000006606) #12	ATP5MC1 (ENSLAFG00000004537) #13	CALCOCO2 (ENSLAFG00000016693) #14	ENSLAFG00000027009	TTLL6 (ENSLAFG00000003368) #15	ENSLAFG00000026602	HOXB13 (ENSLAFG00000011262) #16	HOXB9 (ENSLAFG00000013600) #17	HOXB8 (ENSLAFG00000030682) #18	HOXB7 (ENSLAFG00000030637) #19	HOXB6 (ENSLAFG00000013593) #20	HOXB5 (ENSLAFG00000013590) #21	HOXB4 (ENSLAFG00000013588) #22	HOXB3 (ENSLAFG00000030335) #23	ENSLAFG00000030505	HOXB2 (ENSLAFG00000030161) #24	ENSLAFG00000031610 #25	SKAP1 (ENSLAFG00000018530) #27	SNX11 (ENSLAFG00000018529) #28	CBX1 (ENSLAFG00000018526) #29	NFE2L1 (ENSLAFG00000018523) #30	ENSLAFG00000015209 #32	ENSLAFG00000030284	CDK5RAP3 (ENSLAFG00000000339) #33	PRR15L (ENSLAFG00000015553) #34	PNPO (ENSLAFG00000015550) #35	SP2 (ENSLAFG00000021817) #36	SP6 (ENSLAFG00000010701) #37
Xenarthra	ANCESTRAL SPECIES	1399														ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22
Armadillo	MODERN SPECIES	511													ENSDNOG00000034736	HOXB6 (ENSDNOG00000006841) #20	HOXB5 (ENSDNOG00000042538) #21	HOXB4 (ENSDNOG00000039782) #22	HOXB1 (ENSDNOG00000006826) #25
Marsupialia	ANCESTRAL SPECIES	13	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT01100000263525.b.a	ENSGT00390000006679.b.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00390000006679.b.b #7	ENSGT00940000160427 #9	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00390000006679.b.b #7	ENSGT00940000160427 #9	ENSGT00390000007843 #11	ENSGT00940000159091.e #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Common wonbat	MODERN SPECIES	1037	ZNF652 (ENSVURG00010007816)	PHOSPHO1 (ENSVURG00010007795)	ABI3 (ENSVURG00010007788)	GNGT2 (ENSVURG00010007781)	B4GALNT2 (ENSVURG00010007761) #7	IGF2BP1 (ENSVURG00010007702) #9	SNF8 (ENSVURG00010007691) #11	ENSVURG00010007663 #12	CALCOCO2 (ENSVURG00010007642) #14	HOXB13 (ENSVURG00010007629) #16	HOXB9 (ENSVURG00010007619) #17	HOXB8 (ENSVURG00010007609) #18	HOXB7 (ENSVURG00010007606) #19	HOXB6 (ENSVURG00010007602) #20	HOXB5 (ENSVURG00010007599) #21	HOXB4 (ENSVURG00010007589) #22	HOXB3 (ENSVURG00010007587) #23	HOXB2 (ENSVURG00010007579) #24	HOXB1 (ENSVURG00010007572) #25	SKAP1 (ENSVURG00010007559) #27	SNX11 (ENSVURG00010007541) #28	CBX1 (ENSVURG00010007537) #29	NFE2L1 (ENSVURG00010007465) #30	COPZ2 (ENSVURG00010007430) #32	CDK5RAP3 (ENSVURG00010007403) #33	PRR15L (ENSVURG00010007394) #34	PNPO (ENSVURG00010007376) #35	ENSVURG00010007365	SP2 (ENSVURG00010007347) #36	SP6 (ENSVURG00010007336) #37	SCRN2 (ENSVURG00010007326)
koala	MODERN SPECIES	67	PHOSPHO1 (ENSPCIG00000013107)	ABI3 (ENSPCIG00000013108)	GNGT2 (ENSPCIG00000013109)	B4GALNT2 (ENSPCIG00000003606) #7	IGF2BP1 (ENSPCIG00000013111) #9	SNF8 (ENSPCIG00000013302) #11	ENSPCIG00000013305 #12	ATP5MC1 (ENSPCIG00000013306) #13	CALCOCO2 (ENSPCIG00000010432) #14	TTLL6 (ENSPCIG00000030247) #15	HOXB13 (ENSPCIG00000030249) #16	HOXB9 (ENSPCIG00000030251) #17	HOXB7 (ENSPCIG00000000064) #19	HOXB6 (ENSPCIG00000000076) #20	HOXB5 (ENSPCIG00000031080) #21	HOXB4 (ENSPCIG00000000195) #22	HOXB3 (ENSPCIG00000000217) #23	HOXB2 (ENSPCIG00000000295) #24	HOXB1 (ENSPCIG00000033449) #25	SKAP1 (ENSPCIG00000000339) #27	SNX11 (ENSPCIG00000000612) #28	CBX1 (ENSPCIG00000000630) #29	NFE2L1 (ENSPCIG00000000720) #30	COPZ2 (ENSPCIG00000000757) #32	CDK5RAP3 (ENSPCIG00000000798) #33	PRR15L (ENSPCIG00000000814) #34	PNPO (ENSPCIG00000000828) #35	ENSPCIG00000000834	SP2 (ENSPCIG00000000843) #36	SP6 (ENSPCIG00000000873) #37	SCRN2 (ENSPCIG00000000883)
Wallaby	MODERN SPECIES	10747																HOXB4 (ENSMEUG00000010931) #22
Opossum	MODERN SPECIES	1	B4GALNT2 (ENSMODG00000012242) #7	ENSMODG00000047325	IGF2BP1 (ENSMODG00000012268) #9	ENSMODG00000028269 #10	SNF8 (ENSMODG00000012276) #11	UBE2Z (ENSMODG00000046619) #12	ENSMODG00000012296	ENSMODG00000029509 #14	ENSMODG00000012306 #14	ENSMODG00000025670 #15	HOXB13 (ENSMODG00000012310) #16	HOXB9 (ENSMODG00000012329) #17	HOXB7 (ENSMODG00000044053) #19	HOXB6 (ENSMODG00000012334) #20	HOXB5 (ENSMODG00000012338) #21	HOXB4 (ENSMODG00000042083) #22	HOXB3 (ENSMODG00000012344) #23	HOXB2 (ENSMODG00000012347) #24	HOXB1 (ENSMODG00000046816) #25	SKAP1 (ENSMODG00000012360) #27	SNX11 (ENSMODG00000051179) #28	CBX1 (ENSMODG00000012368) #29	NFE2L1 (ENSMODG00000012375) #30	COPZ2 (ENSMODG00000012424) #32	CDK5RAP3 (ENSMODG00000012439) #33	PRR15L (ENSMODG00000024090) #34	PNPO (ENSMODG00000012446) #35	ENSMODG00000050066	SP2 (ENSMODG00000012452) #36	SP6 (ENSMODG00000012454) #37	SCRN2 (ENSMODG00000012467)
Platypus	MODERN SPECIES	2	ABI3 (ENSOANG00000050932)	GNGT2 (ENSOANG00000037597)	B4GALNT2 (ENSOANG00000042946) #7	IGF2BP1 (ENSOANG00000014859) #9	SNF8 (ENSOANG00000050758) #11	UBE2Z (ENSOANG00000042370) #12	ATP5MC1 (ENSOANG00000049234) #13	ENSOANG00000021387 #14	ENSOANG00000007312 #15	HOXB13 (ENSOANG00000007689) #16	HOXB9 (ENSOANG00000005338) #17	HOXB8 (ENSOANG00000047281) #18	HOXB7 (ENSOANG00000051269) #19	HOXB6 (ENSOANG00000050952) #20	HOXB5 (ENSOANG00000051056) #21	HOXB4 (ENSOANG00000042426) #22	HOXB3 (ENSOANG00000039840) #23	HOXB2 (ENSOANG00000041050) #24	HOXB1 (ENSOANG00000010307) #25	ENSOANG00000044458	SKAP1 (ENSOANG00000010840) #27	ENSOANG00000039817 #28	CBX1 (ENSOANG00000049057) #29	NFE2L1 (ENSOANG00000043783) #30	ENSOANG00000048116 #33	PRR15L (ENSOANG00000013452) #34	PNPO (ENSOANG00000013451) #35	ENSOANG00000049621	SP2 (ENSOANG00000050083) #36	SCRN2 (ENSOANG00000001540)	ENSOANG00000001541
Sauria	ANCESTRAL SPECIES	26	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Archelosauria	ANCESTRAL SPECIES	21	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Cryptodira	ANCESTRAL SPECIES	23	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00390000006679.b.i #7	ENSGT00390000006679.b.j #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Abingdon island giant tortoise	MODERN SPECIES	1609	ENSCABG00000002867 #7	ENSCABG00000002782 #7	IGF2BP1 (ENSCABG00000002771) #9	GIP (ENSCABG00000002769) #10	SNF8 (ENSCABG00000002767) #11	UBE2Z (ENSCABG00000002765) #12	ATP5MC1 (ENSCABG00000002763) #13	CALCOCO2 (ENSCABG00000002761) #14	TTLL6 (ENSCABG00000002759) #15	HOXB13 (ENSCABG00000002758) #16	HOXB9 (ENSCABG00000002754) #17	HOXB8 (ENSCABG00000002750) #18	HOXB7 (ENSCABG00000002742) #19	HOXB6 (ENSCABG00000002738) #20	HOXB5 (ENSCABG00000002737) #21	HOXB4 (ENSCABG00000002736) #22	HOXB3 (ENSCABG00000002733) #23	HOXB2 (ENSCABG00000002731) #24	HOXB1 (ENSCABG00000002728) #25	SKAP1 (ENSCABG00000002721) #27	SNX11 (ENSCABG00000002717) #28	CBX1 (ENSCABG00000002713) #29	NFE2L1 (ENSCABG00000002708) #30	COPZ2 (ENSCABG00000002681) #32	CDK5RAP3 (ENSCABG00000002680) #33	PRR15L (ENSCABG00000002679) #34	PNPO (ENSCABG00000002678) #35	ENSCABG00000002677	SP2 (ENSCABG00000002675) #36	SP6 (ENSCABG00000002674) #37	SCRN2 (ENSCABG00000002671)
Goode s thornscrub tortoise	MODERN SPECIES	15	ENSGEVG00005018310 #7	ENSGEVG00005018261 #7	IGF2BP1 (ENSGEVG00005018150) #9	ENSGEVG00005018109 #10	SNF8 (ENSGEVG00005018088) #11	UBE2Z (ENSGEVG00005018038) #12	ATP5MC1 (ENSGEVG00005018012) #13	CALCOCO2 (ENSGEVG00005017985) #14	ENSGEVG00005017952 #15	HOXB13 (ENSGEVG00005017930) #16	HOXB9 (ENSGEVG00005017896) #17	HOXB8 (ENSGEVG00005017871) #18	HOXB7 (ENSGEVG00005017847) #19	HOXB6 (ENSGEVG00005017822) #20	HOXB5 (ENSGEVG00005017800) #21	HOXB4 (ENSGEVG00005017783) #22	HOXB3 (ENSGEVG00005017763) #23	HOXB2 (ENSGEVG00005017753) #24	HOXB1 (ENSGEVG00005017735) #25	SKAP1 (ENSGEVG00005017712) #27	SNX11 (ENSGEVG00005017693) #28	CBX1 (ENSGEVG00005017682) #29	NFE2L1 (ENSGEVG00005017658) #30	COPZ2 (ENSGEVG00005017626) #32	CDK5RAP3 (ENSGEVG00005017600) #33	PRR15L (ENSGEVG00005017586) #34	PNPO (ENSGEVG00005017569) #35	ENSGEVG00005017553	SP2 (ENSGEVG00005017526) #36	SCRN2 (ENSGEVG00005017480)	LRRC46 (ENSGEVG00005017463)
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Three-toed box turtle	MODERN SPECIES	91	ABI3 (ENSTMTG00000007978)	GNGT2 (ENSTMTG00000007963)	IGF2BP1 (ENSTMTG00000007859) #9	GIP (ENSTMTG00000007840) #10	SNF8 (ENSTMTG00000007821) #11	UBE2Z (ENSTMTG00000007812) #12	ATP5MC1 (ENSTMTG00000007797) #13	CALCOCO2 (ENSTMTG00000007745) #14	ENSTMTG00000007723 #15	HOXB13 (ENSTMTG00000007711) #16	HOXB9 (ENSTMTG00000007702) #17	HOXB8 (ENSTMTG00000007693) #18	HOXB7 (ENSTMTG00000007684) #19	HOXB6 (ENSTMTG00000007672) #20	HOXB5 (ENSTMTG00000007666) #21	HOXB4 (ENSTMTG00000007660) #22	HOXB3 (ENSTMTG00000007653) #23	HOXB2 (ENSTMTG00000007640) #24	HOXB1 (ENSTMTG00000007622) #25	SKAP1 (ENSTMTG00000007393) #27	SNX11 (ENSTMTG00000007347) #28	CBX1 (ENSTMTG00000007333) #29	NFE2L1 (ENSTMTG00000007320) #30	COPZ2 (ENSTMTG00000007271) #32	CDK5RAP3 (ENSTMTG00000007229) #33	PRR15L (ENSTMTG00000007217) #34	PNPO (ENSTMTG00000007206) #35	ENSTMTG00000007188	SP2 (ENSTMTG00000007171) #36	ENSTMTG00000007161 #37	SCRN2 (ENSTMTG00000007144)
Chinese turtle	MODERN SPECIES	873	ABI3 (ENSPSIG00000004779)	GNGT2 (ENSPSIG00000004780)	B4GALNT2 (ENSPSIG00000004798) #7	IGF2BP1 (ENSPSIG00000005175) #9	ENSPSIG00000005451 #10	SNF8 (ENSPSIG00000005459) #11	ENSPSIG00000005879	CALCOCO2 (ENSPSIG00000006041) #14	ENSPSIG00000006373 #16	TTLL6 (ENSPSIG00000006379) #15	HOXB9 (ENSPSIG00000007113) #17	HOXB8 (ENSPSIG00000007118) #18	HOXB7 (ENSPSIG00000007133) #19	HOXB6 (ENSPSIG00000007278) #20	HOXB5 (ENSPSIG00000007287) #21	HOXB4 (ENSPSIG00000007302) #22	HOXB3 (ENSPSIG00000007309) #23	HOXB1 (ENSPSIG00000007311) #25	ENSPSIG00000001784	SKAP1 (ENSPSIG00000007314) #27	SNX11 (ENSPSIG00000007556) #28	CBX1 (ENSPSIG00000007751) #29	ENSPSIG00000007945 #30	COPZ2 (ENSPSIG00000008186) #32
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Aves	ANCESTRAL SPECIES	26	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Neognathae	ANCESTRAL SPECIES	23	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Anatidae	ANCESTRAL SPECIES	70	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Pink-footed goose	MODERN SPECIES	305	PHOSPHO1 (ENSABRG00000021486)	ABI3 (ENSABRG00000021488)	GNGT2 (ENSABRG00000021492)	IGF2BP1 (ENSABRG00000000212) #9	GIP (ENSABRG00000000246) #10	SNF8 (ENSABRG00000000286) #11	UBE2Z (ENSABRG00000000335) #12	ATP5MC1 (ENSABRG00000000359) #13	CALCOCO2 (ENSABRG00000000383) #14	HOXB13 (ENSABRG00000000421) #16	HOXB9 (ENSABRG00000000456) #17	HOXB8 (ENSABRG00000000461) #18	HOXB7 (ENSABRG00000000473) #19	HOXB6 (ENSABRG00000000480) #20	HOXB5 (ENSABRG00000000485) #21	HOXB4 (ENSABRG00000000495) #22	HOXB3 (ENSABRG00000000506) #23	HOXB2 (ENSABRG00000000517) #24	HOXB1 (ENSABRG00000000522) #25	SKAP1 (ENSABRG00000000558) #27	SNX11 (ENSABRG00000000576) #28	CBX1 (ENSABRG00000000584) #29	NFE2L1 (ENSABRG00000000594) #30	ENSABRG00000000606 #32	CDK5RAP3 (ENSABRG00000000636) #33	PNPO (ENSABRG00000000676) #35	SP2 (ENSABRG00000001034) #36	SP6 (ENSABRG00000001100) #37	SCRN2 (ENSABRG00000001107)	LRRC46 (ENSABRG00000001138)	MRPL10 (ENSABRG00000001154)
Duck	MODERN SPECIES	19	PHOSPHO1 (ENSAPLG00000012201)	ENSAPLG00000021605	ENSAPLG00000022532	GNGT2 (ENSAPLG00000012604)	IGF2BP1 (ENSAPLG00000012620) #9	GIP (ENSAPLG00000013204) #10	SNF8 (ENSAPLG00000031118) #11	ENSAPLG00000013301	ENSAPLG00000013396 #14	HOXB13 (ENSAPLG00000023394) #16	HOXB9 (ENSAPLG00000013604) #17	HOXB8 (ENSAPLG00000013614) #18	HOXB7 (ENSAPLG00000013643) #19	HOXB6 (ENSAPLG00000013649) #20	HOXB5 (ENSAPLG00000013657) #21	HOXB4 (ENSAPLG00000013669) #22	HOXB3 (ENSAPLG00000018688) #23	HOXB2 (ENSAPLG00000022580) #24	HOXB1 (ENSAPLG00000018179) #25	SKAP1 (ENSAPLG00000007983) #27
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Chicken	MODERN SPECIES	19	ABI3 (ENSGALG00010024497)	GNGT2 (ENSGALG00010024500)	IGF2BP1 (ENSGALG00010024697) #9	GIP (ENSGALG00010026239) #10	SNF8 (ENSGALG00010026298) #11	UBE2Z (ENSGALG00010026856) #12	ATP5MC1 (ENSGALG00010026305) #13	ENSGALG00010026334 #14	HOXB13 (ENSGALG00010026052) #16	HOXB9 (ENSGALG00010026782) #17	ENSGALG00010023374 #18	HOXB8 (ENSGALG00010021446) #18	HOXB7 (ENSGALG00010023381) #19	HOXB6 (ENSGALG00010023383) #20	HOXB5 (ENSGALG00010023394) #21	HOXB4 (ENSGALG00010023415) #22	HOXB3 (ENSGALG00010023428) #23	HOXB2 (ENSGALG00010023438) #24	HOXB1 (ENSGALG00010023454) #25	SKAP1 (ENSGALG00010021479) #27	SNX11 (ENSGALG00010021554) #28	CBX1 (ENSGALG00010021565) #29	NFE2L1 (ENSGALG00010021583) #30	CDK5RAP3 (ENSGALG00010023706) #33	PRR15L (ENSGALG00010023722) #34	PNPO (ENSGALG00010023726) #35	SP2 (ENSGALG00010023730) #36	SP6 (ENSGALG00010023742) #37	SCRN2 (ENSGALG00010023770)	LRRC46 (ENSGALG00010023784)	MRPL10 (ENSGALG00010023807)
Turkey	MODERN SPECIES	1082																ENSMGAG00000019670 #22
Japanese quail	MODERN SPECIES	19	PHOSPHO1 (ENSCJPG00005019352)	ABI3 (ENSCJPG00005019354)	GNGT2 (ENSCJPG00005019355)	IGF2BP1 (ENSCJPG00005019356) #9	GIP (ENSCJPG00005019357) #10	SNF8 (ENSCJPG00005019359) #11	UBE2Z (ENSCJPG00005019360) #12	ENSCJPG00005019361	ENSCJPG00005019362 #14	HOXB13 (ENSCJPG00005019363) #16	HOXB9 (ENSCJPG00005019365) #17	HOXB8 (ENSCJPG00005019366) #18	HOXB7 (ENSCJPG00005019367) #19	HOXB6 (ENSCJPG00005019368) #20	HOXB5 (ENSCJPG00005019369) #21	HOXB4 (ENSCJPG00005019371) #22	HOXB3 (ENSCJPG00005019372) #23	HOXB2 (ENSCJPG00005019373) #24	HOXB1 (ENSCJPG00005019374) #25	SKAP1 (ENSCJPG00005019375) #27	SNX11 (ENSCJPG00005019376) #28	CBX1 (ENSCJPG00005019377) #29	NFE2L1 (ENSCJPG00005019378) #30	CDK5RAP3 (ENSCJPG00005019379) #33	PRR15L (ENSCJPG00005019386) #34	SP2 (ENSCJPG00005019387) #36	SP6 (ENSCJPG00005019388) #37	SCRN2 (ENSCJPG00005019389)	LRRC46 (ENSCJPG00005019390)	MRPL10 (ENSCJPG00005019391)	TBX21 (ENSCJPG00005019401)
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00390000007741.a	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000159720	ENSGT00950000183025.a #14	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.d #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Golden eagle	MODERN SPECIES	24	PHOSPHO1 (ENSACCG00020006039)	ABI3 (ENSACCG00020006027)	GNGT2 (ENSACCG00020006019)	IGF2BP1 (ENSACCG00020006001) #9	GIP (ENSACCG00020005975) #10	SNF8 (ENSACCG00020005957) #11	UBE2Z (ENSACCG00020005940) #12	ENSACCG00020005924	CALCOCO2 (ENSACCG00020005903) #14	HOXB13 (ENSACCG00020005876) #16	HOXB9 (ENSACCG00020005856) #17	HOXB8 (ENSACCG00020005840) #18	HOXB7 (ENSACCG00020005829) #19	HOXB6 (ENSACCG00020005822) #20	HOXB5 (ENSACCG00020005810) #21	HOXB4 (ENSACCG00020005789) #22	HOXB3 (ENSACCG00020005780) #23	HOXB2 (ENSACCG00020005767) #24	HOXB1 (ENSACCG00020005760) #25	ENSACCG00020005744	SKAP1 (ENSACCG00020005684) #27	SNX11 (ENSACCG00020005654) #28	CBX1 (ENSACCG00020005635) #29	NFE2L1 (ENSACCG00020005624) #30	ENSACCG00020005600	CDK5RAP3 (ENSACCG00020005558) #33	PRR15L (ENSACCG00020005531) #34	PNPO (ENSACCG00020005520) #35	ENSACCG00020005504	SP2 (ENSACCG00020005484) #36	SCRN2 (ENSACCG00020005452)
African ostrich	MODERN SPECIES	625				PHB1 (ENSSCUG00000008422)	ZNF652 (ENSSCUG00000008426)	GNGT2 (ENSSCUG00000008427)	IGF2BP1 (ENSSCUG00000008429) #9	GIP (ENSSCUG00000008435) #10	SNF8 (ENSSCUG00000008438) #11	UBE2Z (ENSSCUG00000008440) #12	CALCOCO2 (ENSSCUG00000008444) #14	HOXB9 (ENSSCUG00000008450) #17	HOXB8 (ENSSCUG00000008451) #18	HOXB7 (ENSSCUG00000008454) #19	HOXB5 (ENSSCUG00000008457) #21	HOXB4 (ENSSCUG00000008461) #22	HOXB3 (ENSSCUG00000008463) #23	HOXB2 (ENSSCUG00000008465) #24	HOXB1 (ENSSCUG00000008466) #25	SKAP1 (ENSSCUG00000008467) #27	SNX11 (ENSSCUG00000008468) #28	CBX1 (ENSSCUG00000008469) #29	NFE2L1 (ENSSCUG00000008470) #30	ENSSCUG00000008471 #33	ENSSCUG00000008472 #33	PRR15L (ENSSCUG00000008473) #34	PNPO (ENSSCUG00000008474) #35	SP2 (ENSSCUG00000008476) #36
Australian saltwater crocodile	MODERN SPECIES	60	ABI3 (ENSCPRG00005007322)	IGF2BP1 (ENSCPRG00005007311) #9	GIP (ENSCPRG00005007298) #10	SNF8 (ENSCPRG00005007296) #11	UBE2Z (ENSCPRG00005007294) #12	ATP5MC1 (ENSCPRG00005007292) #13	ENSCPRG00005007273 #14	TTLL6 (ENSCPRG00005007263) #15	ENSCPRG00005007261	HOXB13 (ENSCPRG00005007259) #16	HOXB9 (ENSCPRG00005007240) #17	HOXB8 (ENSCPRG00005007236) #18	HOXB7 (ENSCPRG00005007234) #19	HOXB6 (ENSCPRG00005007226) #20	HOXB5 (ENSCPRG00005007222) #21	HOXB4 (ENSCPRG00005007218) #22	HOXB3 (ENSCPRG00005007217) #23	HOXB2 (ENSCPRG00005007216) #24	HOXB1 (ENSCPRG00005007211) #25	SKAP1 (ENSCPRG00005007201) #27	SNX11 (ENSCPRG00005007185) #28	CBX1 (ENSCPRG00005007181) #29	NFE2L1 (ENSCPRG00005007178) #30	COPZ2 (ENSCPRG00005007172) #32	CDK5RAP3 (ENSCPRG00005007163) #33	PRR15L (ENSCPRG00005007160) #34	PNPO (ENSCPRG00005007155) #35	ENSCPRG00005007151	SP2 (ENSCPRG00005007150) #36	SP6 (ENSCPRG00005007147) #37	SCRN2 (ENSCPRG00005007138)
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT01100000263525.b.a	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Episquamata	ANCESTRAL SPECIES	5	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000165938	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000165938	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Elapidae	ANCESTRAL SPECIES	5	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000165938	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230.g #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.b #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000165938	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230.g #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.b #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00940000161315
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT01100000263525.b.a	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT01100000263641.a	ENSGT00960000191601	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529.g #18	ENSGT00940000161230.g #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00940000159590.b #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a	ENSGT00960000192469
Eastern brown snake	MODERN SPECIES	49	ABI3 (ENSPTXG00000013874)	ENSPTXG00000013875	IGF2BP1 (ENSPTXG00000013878) #9	SNF8 (ENSPTXG00000013881) #11	UBE2Z (ENSPTXG00000013882) #12	ATP5MC1 (ENSPTXG00000013884) #13	ENSPTXG00000013886 #14	ENSPTXG00000013887	ENSPTXG00000013890	HOXB13 (ENSPTXG00000013892) #16	HOXB9 (ENSPTXG00000013894) #17	ENSPTXG00000013896 #18	ENSPTXG00000013897 #19	HOXB6 (ENSPTXG00000013898) #20	HOXB5 (ENSPTXG00000013900) #21	HOXB4 (ENSPTXG00000013902) #22	HOXB3 (ENSPTXG00000013904) #23	HOXB2 (ENSPTXG00000013905) #24	HOXB1 (ENSPTXG00000013906) #25	ENSPTXG00000013907	SKAP1 (ENSPTXG00000013908) #27	SNX11 (ENSPTXG00000013909) #28	ENSPTXG00000013911 ##29	NFE2L1 (ENSPTXG00000013912) #30	COPZ2 (ENSPTXG00000013913) #32	CDK5RAP3 (ENSPTXG00000013914) #33	PRR15L (ENSPTXG00000013915) #34	PNPO (ENSPTXG00000013916) #35	ENSPTXG00000013917 #36	SP6 (ENSPTXG00000013918) #37	SCRN2 (ENSPTXG00000013919)
Mainland tiger snake	MODERN SPECIES	29	ENSNSUG00000007425 #10	SNF8 (ENSNSUG00000007427) #11	UBE2Z (ENSNSUG00000007428) #12	ATP5MC1 (ENSNSUG00000007429) #13	ENSNSUG00000007431 #14	ENSNSUG00000007433	ENSNSUG00000007436	ENSNSUG00000007438	ENSNSUG00000007439 #15	HOXB13 (ENSNSUG00000007440) #16	HOXB9 (ENSNSUG00000007441) #17	ENSNSUG00000007442 #18	ENSNSUG00000007443 #19	HOXB6 (ENSNSUG00000007444) #20	HOXB5 (ENSNSUG00000007445) #21	HOXB4 (ENSNSUG00000007447) #22	HOXB3 (ENSNSUG00000007448) #23	HOXB2 (ENSNSUG00000007449) #24	HOXB1 (ENSNSUG00000007450) #25	SKAP1 (ENSNSUG00000007452) #27	SNX11 (ENSNSUG00000007454) #28	ENSNSUG00000007455 ##29	NFE2L1 (ENSNSUG00000007456) #30	COPZ2 (ENSNSUG00000007459) #32	CDK5RAP3 (ENSNSUG00000007503) #33	PRR15L (ENSNSUG00000007504) #34	PNPO (ENSNSUG00000007506) #35	ENSNSUG00000007509 #36	SP6 (ENSNSUG00000007513) #37	SCRN2 (ENSNSUG00000007517)	ENSNSUG00000007519
Blue-lipped sea krait	MODERN SPECIES	9907											HOXB9 (ENSLLTG00000013388) #17	HOXB8 (ENSLLTG00000013376) #18	HOXB7 (ENSLLTG00000013372) #19	HOXB6 (ENSLLTG00000013367) #20	HOXB5 (ENSLLTG00000013362) #21	HOXB4 (ENSLLTG00000013356) #22	HOXB3 (ENSLLTG00000013351) #23	HOXB2 (ENSLLTG00000013346) #24	HOXB1 (ENSLLTG00000013341) #25
Indian cobra	MODERN SPECIES	337	GNGT2 (ENSNNAG00000009770)	B4GALNT2 (ENSNNAG00000009682) #7	IGF2BP1 (ENSNNAG00000009591) #9	SNF8 (ENSNNAG00000009568) #11	UBE2Z (ENSNNAG00000009539) #12	ATP5MC1 (ENSNNAG00000009523) #13	ENSNNAG00000009498 #14	ENSNNAG00000009486	ENSNNAG00000009471	HOXB13 (ENSNNAG00000009423) #16	HOXB9 (ENSNNAG00000009384) #17	HOXB8 (ENSNNAG00000009361) #18	HOXB7 (ENSNNAG00000009344) #19	HOXB6 (ENSNNAG00000009328) #20	HOXB5 (ENSNNAG00000009308) #21	HOXB4 (ENSNNAG00000009277) #22	HOXB3 (ENSNNAG00000009256) #23	HOXB2 (ENSNNAG00000009232) #24	HOXB1 (ENSNNAG00000009145) #25	SNX11 (ENSNNAG00000009074) #28	ENSNNAG00000009045 ##29	NFE2L1 (ENSNNAG00000009022) #30	COPZ2 (ENSNNAG00000008924) #32	CDK5RAP3 (ENSNNAG00000008878) #33	PRR15L (ENSNNAG00000008859) #34	PNPO (ENSNNAG00000008837) #35	ENSNNAG00000008826 #36	SP6 (ENSNNAG00000008820) #37	SCRN2 (ENSNNAG00000008774)	ENSNNAG00000008753	MRPL10 (ENSNNAG00000008730)
Lizard	MODERN SPECIES	5	ENSACAG00000006165 #7	IGF2BP1 (ENSACAG00000006199) #9	ENSACAG00000006291 #10	SNF8 (ENSACAG00000036858) #11	UBE2Z (ENSACAG00000006311) #12	ENSACAG00000042101	ATP5MC1 (ENSACAG00000035288) #13	ENSACAG00000006352 #14	ENSACAG00000035828	TTLL6 (ENSACAG00000006363) #15	HOXB9 (ENSACAG00000040887) #17	HOXB8 (ENSACAG00000036553) #18	HOXB7 (ENSACAG00000041279) #19	HOXB6 (ENSACAG00000034900) #20	HOXB5 (ENSACAG00000042998) #21	HOXB4 (ENSACAG00000006499) #22	HOXB3 (ENSACAG00000006508) #23	HOXB2 (ENSACAG00000006521) #24	HOXB1 (ENSACAG00000035547) #25	ENSACAG00000041448	ENSACAG00000034966	SKAP1 (ENSACAG00000006534) #27	SNX11 (ENSACAG00000006556) #28	ENSACAG00000006594 ##29	NFE2L1 (ENSACAG00000006615) #30	COPZ2 (ENSACAG00000006651) #32	CDK5RAP3 (ENSACAG00000006686) #33	PRR15L (ENSACAG00000006762) #34	PNPO (ENSACAG00000006764) #35	SP2 (ENSACAG00000006793) #36	SP6 (ENSACAG00000006831) #37
Laterata	ANCESTRAL SPECIES	11	ENSGT00390000006679.b #7	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843.cb #11	ENSGT00940000159091 #12	ENSGT00940000154298.a.b #13	ENSGT00950000183025.a #14	ENSGT00940000165938.a	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152.c.a ##29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Common wall lizard	MODERN SPECIES	4	IGF2BP1 (ENSPMRG00000013095) #9	ENSPMRG00000013106 #10	SNF8 (ENSPMRG00000013111) #11	UBE2Z (ENSPMRG00000013116) #12	ENSPMRG00000013122 #13	ENSPMRG00000013127 #14	ENSPMRG00000013134	ENSPMRG00000013136	ENSPMRG00000013141	TTLL6 (ENSPMRG00000013146) #15	HOXB9 (ENSPMRG00000013158) #17	HOXB8 (ENSPMRG00000013160) #18	HOXB7 (ENSPMRG00000013164) #19	HOXB6 (ENSPMRG00000013165) #20	HOXB5 (ENSPMRG00000013170) #21	HOXB4 (ENSPMRG00000013173) #22	HOXB3 (ENSPMRG00000013178) #23	HOXB2 (ENSPMRG00000013183) #24	HOXB1 (ENSPMRG00000013189) #25	ENSPMRG00000013192	CBX1 (ENSPMRG00000013202) ##29	SNX11 (ENSPMRG00000013221) #28	NFE2L1 (ENSPMRG00000013246) #30	ENSPMRG00000013258	COPZ2 (ENSPMRG00000013275) #32	CDK5RAP3 (ENSPMRG00000013294) #33	PNPO (ENSPMRG00000013310) #35	ENSPMRG00000013316	SP2 (ENSPMRG00000013320) #36	SP6 (ENSPMRG00000013329) #37	SCRN2 (ENSPMRG00000013336)
Argentine black and white tegu	MODERN SPECIES	32	B4GALNT2 (ENSSMRG00000021814) #7	IGF2BP1 (ENSSMRG00000021826) #9	SNF8 (ENSSMRG00000021827) #11	UBE2Z (ENSSMRG00000021828) #12	ENSSMRG00000021829	CALCOCO2 (ENSSMRG00000021830) #14	ENSSMRG00000021831	ENSSMRG00000021832	ENSSMRG00000021833 #15	HOXB13 (ENSSMRG00000021834) #16	HOXB9 (ENSSMRG00000021835) #17	HOXB8 (ENSSMRG00000021836) #18	HOXB7 (ENSSMRG00000021837) #19	HOXB6 (ENSSMRG00000021838) #20	HOXB5 (ENSSMRG00000021839) #21	HOXB4 (ENSSMRG00000021841) #22	HOXB3 (ENSSMRG00000021842) #23	HOXB2 (ENSSMRG00000021844) #24	HOXB1 (ENSSMRG00000021845) #25	SKAP1 (ENSSMRG00000021847) #27	SNX11 (ENSSMRG00000021848) #28	CBX1 (ENSSMRG00000021849) ##29	NFE2L1 (ENSSMRG00000021850) #30	COPZ2 (ENSSMRG00000021851) #32	CDK5RAP3 (ENSSMRG00000021852) #33	PRR15L (ENSSMRG00000021853) #34	PNPO (ENSSMRG00000021854) #35	ENSSMRG00000021855	SP2 (ENSSMRG00000021856) #36	SP6 (ENSSMRG00000021857) #37	SCRN2 (ENSSMRG00000021858)
tuatara	MODERN SPECIES	1118	ENSSPUG00000006866	GNGT2 (ENSSPUG00000006845)	ENSSPUG00000006744 #7	ENSSPUG00000006590 #7	IGF2BP1 (ENSSPUG00000006526) #9	ENSSPUG00000006512 #11	ENSSPUG00000006503	UBE2Z (ENSSPUG00000006500) #12	ENSSPUG00000006493	ENSSPUG00000006484 #14	TTLL6 (ENSSPUG00000006396) #15	HOXB9 (ENSSPUG00000006346) #17	HOXB8 (ENSSPUG00000006333) #18	HOXB7 (ENSSPUG00000006323) #19	HOXB6 (ENSSPUG00000006308) #20	HOXB4 (ENSSPUG00000006280) #22	HOXB3 (ENSSPUG00000006266) #23	FLRT1 (ENSSPUG00000006188)	MACROD1 (ENSSPUG00000006177)	STIP1 (ENSSPUG00000006129)	FERMT3 (ENSSPUG00000005869)	NUDT22 (ENSSPUG00000005809)	DNAJC4 (ENSSPUG00000005787)	FKBP2 (ENSSPUG00000005764)	PPP1R14B (ENSSPUG00000005736)	PLCB3 (ENSSPUG00000005615)	ENSSPUG00000005596	ENSSPUG00000005590	ENSSPUG00000005575	GPR137 (ENSSPUG00000005567)	KCNK4 (ENSSPUG00000005547)
Anura	ANCESTRAL SPECIES	15	ENSGT00940000160096	ENSGT00940000159787	ENSGT00940000157106	ENSGT01090000260040.b.a.b	ENSGT00940000158934	ENSGT00940000160902	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00950000183025.a #14	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #27	ENSGT00940000160113 #28	ENSGT00940000154152 #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #32	ENSGT00390000000713 #33	ENSGT00940000154534.a #34	ENSGT00390000011219 #35	ENSGT00640000092844	ENSGT00940000159590 #36	ENSGT00940000161498 #37	ENSGT00390000013474.b.a
Frog	MODERN SPECIES	1	kcns1 (ENSXETG00000027345)	stk4 (ENSXETG00000022832)	pabpc1l (ENSXETG00000022831)	ywhab (ENSXETG00000022830)	rims4 (ENSXETG00000044345)	ENSXETG00000034484	kcnk15 (ENSXETG00000038181)	gip (ENSXETG00000031431) #10	snf8 (ENSXETG00000022819) #11	ube2z (ENSXETG00000043685) #12	calcoco2 (ENSXETG00000022806) #14	hoxb9 (ENSXETG00000043711) #17	hoxb8 (ENSXETG00000021993) #18	hoxb6 (ENSXETG00000021987) #20	hoxb5 (ENSXETG00000021978) #21	hoxb4 (ENSXETG00000021973) #22	hoxb3 (ENSXETG00000021967) #23	hoxb2 (ENSXETG00000027353) #24	hoxb1 (ENSXETG00000049208) #25	skap1 (ENSXETG00000027357) #27	snx11 (ENSXETG00000038807) #28	cbx1 (ENSXETG00000021962) #29	nfe2l1 (ENSXETG00000021958) #30	copz2 (ENSXETG00000021957) #32	prr15l (ENSXETG00000032726) #34	cdk5rap3 (ENSXETG00000027359) #33	XB5788060 [provisional] (ENSXETG00000027360)	sp2 (ENSXETG00000021952) #36	ENSXETG00000043506	sp6 (ENSXETG00000048156) #37	scrn2 (ENSXETG00000021947)