Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00950000185410	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00990000209473	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Glires	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00990000209473	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00990000209473	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00990000209473	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Degu	MODERN SPECIES	97	ABI3 (ENSODEG00000017358) #7	GNGT2 (ENSODEG00000017526) #8	B4GALNT2 (ENSODEG00000018456) #9	ENSODEG00000016991 #10	ENSODEG00000017109 #11	GIP (ENSODEG00000017003) #12	ENSODEG00000017032 #13	UBE2Z (ENSODEG00000017306) #14	ATP5MC1 (ENSODEG00000017366) #15	TTLL6 (ENSODEG00000017145) #16	HOXB13 (ENSODEG00000017199) #17	HOXB9 (ENSODEG00000017293) #18	HOXB8 (ENSODEG00000017119) #19	HOXB6 (ENSODEG00000016988) #20	HOXB5 (ENSODEG00000017253) #21	HOXB4 (ENSODEG00000017038) #22	HOXB3 (ENSODEG00000017116) #23	HOXB2 (ENSODEG00000017153) #24	HOXB1 (ENSODEG00000017050) #25	SKAP1 (ENSODEG00000017533) #26	SNX11 (ENSODEG00000017458) #27	CBX1 (ENSODEG00000017272) #28	NFE2L1 (ENSODEG00000017348) #29	ENSODEG00000020421 #30	COPZ2 (ENSODEG00000017565) #31	ENSODEG00000017229 #32	PNPO (ENSODEG00000017424) #33	SP2 (ENSODEG00000017126) #34	SP6 (ENSODEG00000017625) #35	SCRN2 (ENSODEG00000017395) #36	LRRC46 (ENSODEG00000017367) #37
Long-tailed chinchilla	MODERN SPECIES	158	ABI3 (ENSCLAG00000015475) #7	GNGT2 (ENSCLAG00000014970) #8	B4GALNT2 (ENSCLAG00000016224) #9	IGF2BP1 (ENSCLAG00000015853) #10	ENSCLAG00000014301 #12	SNF8 (ENSCLAG00000013387) #13	UBE2Z (ENSCLAG00000016068) #14	ATP5MC1 (ENSCLAG00000015723) #15	CALCOCO2 (ENSCLAG00000015881)	TTLL6 (ENSCLAG00000013529) #16	HOXB13 (ENSCLAG00000014855) #17	ENSCLAG00000015198 #18	HOXB7 (ENSCLAG00000014906)	HOXB6 (ENSCLAG00000015524) #20	HOXB5 (ENSCLAG00000014374) #21	HOXB4 (ENSCLAG00000014725) #22	HOXB3 (ENSCLAG00000015322) #23	HOXB2 (ENSCLAG00000015271) #24	HOXB1 (ENSCLAG00000013047) #25	SKAP1 (ENSCLAG00000015423) #26	SNX11 (ENSCLAG00000015837) #27	CBX1 (ENSCLAG00000013587) #28	NFE2L1 (ENSCLAG00000014836) #29	COPZ2 (ENSCLAG00000013544) #31	CDK5RAP3 (ENSCLAG00000012292) #32	PRR15L (ENSCLAG00000017903)	PNPO (ENSCLAG00000013871) #33	SP2 (ENSCLAG00000014115) #34	SP6 (ENSCLAG00000016276) #35	LRRC46 (ENSCLAG00000016713) #37	SCRN2 (ENSCLAG00000013965) #36
Naked mole-rat female	MODERN SPECIES	12	B4GALNT2 (ENSHGLG00000011792) #9	IGF2BP1 (ENSHGLG00000010492) #10	ENSHGLG00000010703 #12	SNF8 (ENSHGLG00000011519) #13	UBE2Z (ENSHGLG00000016280) #14	ATP5MC1 (ENSHGLG00000035460) #15	CALCOCO2 (ENSHGLG00000012114)	TTLL6 (ENSHGLG00000019187) #16	HOXB13 (ENSHGLG00000014634) #17	ENSHGLG00000048296	HOXB9 (ENSHGLG00000014731) #18	HOXB8 (ENSHGLG00000038380) #19	HOXB7 (ENSHGLG00000045318)	HOXB6 (ENSHGLG00000012400) #20	HOXB5 (ENSHGLG00000039265) #21	HOXB4 (ENSHGLG00000034075) #22	HOXB3 (ENSHGLG00000010686) #23	HOXB2 (ENSHGLG00000010090) #24	HOXB1 (ENSHGLG00000009781) #25	SKAP1 (ENSHGLG00000014563) #26	SNX11 (ENSHGLG00000016837) #27	CBX1 (ENSHGLG00000013574) #28	NFE2L1 (ENSHGLG00000012592) #29	COPZ2 (ENSHGLG00000018543) #31	CDK5RAP3 (ENSHGLG00000019464) #32	PRR15L (ENSHGLG00000014696)	PNPO (ENSHGLG00000013159) #33	SP2 (ENSHGLG00000009902) #34	SP6 (ENSHGLG00000021113) #35	SCRN2 (ENSHGLG00000041375) #36	LRRC46 (ENSHGLG00000035931) #37
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00990000209473	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Marmotini	ANCESTRAL SPECIES	8	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Alpin marmot	MODERN SPECIES	42	PHOSPHO1 (ENSMMMG00000000434)	ABI3 (ENSMMMG00000000452) #7	GNGT2 (ENSMMMG00000000525) #8	B4GALNT2 (ENSMMMG00000000569) #9	IGF2BP1 (ENSMMMG00000000613) #10	GIP (ENSMMMG00000000652) #12	SNF8 (ENSMMMG00000000680) #13	UBE2Z (ENSMMMG00000000717) #14	ATP5MC1 (ENSMMMG00000000731) #15	ENSMMMG00000000759	TTLL6 (ENSMMMG00000001013) #16	HOXB13 (ENSMMMG00000001064) #17	HOXB7 (ENSMMMG00000001087)	HOXB6 (ENSMMMG00000001098) #20	HOXB5 (ENSMMMG00000001112) #21	HOXB4 (ENSMMMG00000001129) #22	HOXB3 (ENSMMMG00000001139) #23	HOXB1 (ENSMMMG00000001151) #25	SKAP1 (ENSMMMG00000001168) #26	SNX11 (ENSMMMG00000001243) #27	CBX1 (ENSMMMG00000001254) #28	NFE2L1 (ENSMMMG00000001284) #29	COPZ2 (ENSMMMG00000001352) #31	CDK5RAP3 (ENSMMMG00000001404) #32	GOSR2 (ENSMMMG00000001471)	RPRML (ENSMMMG00000001486)	LYZL6 (ENSMMMG00000001501)	ENSMMMG00000001520	ENSMMMG00000001551	ENSMMMG00000001756	ENSMMMG00000001792
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Arctic ground squirrel	MODERN SPECIES	46	GNGT2 (ENSUPAG00010006078) #8	B4GALNT2 (ENSUPAG00010006086) #9	IGF2BP1 (ENSUPAG00010006100) #10	GIP (ENSUPAG00010006136) #12	SNF8 (ENSUPAG00010006148) #13	UBE2Z (ENSUPAG00010006178) #14	ENSUPAG00010006195	CALCOCO2 (ENSUPAG00010006243)	TTLL6 (ENSUPAG00010006267) #16	HOXB13 (ENSUPAG00010006301) #17	HOXB9 (ENSUPAG00010006305) #18	HOXB8 (ENSUPAG00010006310) #19	HOXB7 (ENSUPAG00010006312)	HOXB6 (ENSUPAG00010006317) #20	HOXB5 (ENSUPAG00010006320) #21	HOXB4 (ENSUPAG00010006325) #22	HOXB3 (ENSUPAG00010006328) #23	HOXB2 (ENSUPAG00010006336) #24	HOXB1 (ENSUPAG00010006340) #25	SKAP1 (ENSUPAG00010006345) #26	SNX11 (ENSUPAG00010006370) #27	CBX1 (ENSUPAG00010006381) #28	NFE2L1 (ENSUPAG00010006396) #29	COPZ2 (ENSUPAG00010006455) #31	CDK5RAP3 (ENSUPAG00010006466) #32	PRR15L (ENSUPAG00010006473)	PNPO (ENSUPAG00010006483) #33	SP2 (ENSUPAG00010006507) #34	SP6 (ENSUPAG00010006522) #35	SCRN2 (ENSUPAG00010006526) #36	LRRC46 (ENSUPAG00010006533) #37
Squirrel	MODERN SPECIES	90	B4GALNT2 (ENSSTOG00000007604) #9	IGF2BP1 (ENSSTOG00000010643) #10	GIP (ENSSTOG00000004043) #12	SNF8 (ENSSTOG00000004023) #13	UBE2Z (ENSSTOG00000000796) #14	ATP5MC1 (ENSSTOG00000013404) #15	ENSSTOG00000013395	TTLL6 (ENSSTOG00000006016) #16	ENSSTOG00000025444	HOXB13 (ENSSTOG00000014942) #17	HOXB9 (ENSSTOG00000009741) #18	HOXB8 (ENSSTOG00000028337) #19	HOXB7 (ENSSTOG00000025657)	HOXB6 (ENSSTOG00000020303) #20	HOXB5 (ENSSTOG00000009740) #21	HOXB4 (ENSSTOG00000009734) #22	HOXB3 (ENSSTOG00000025093) #23	HOXB2 (ENSSTOG00000023586) #24	HOXB1 (ENSSTOG00000028630) #25	SKAP1 (ENSSTOG00000013692) #26	SNX11 (ENSSTOG00000013684) #27	CBX1 (ENSSTOG00000023986) #28	NFE2L1 (ENSSTOG00000013664) #29	ENSSTOG00000027550 #31	CDK5RAP3 (ENSSTOG00000006244) #32	PRR15L (ENSSTOG00000006235)	PNPO (ENSSTOG00000006221) #33	SP2 (ENSSTOG00000015926) #34	SP6 (ENSSTOG00000001607) #35	SCRN2 (ENSSTOG00000027108) #36	LRRC46 (ENSSTOG00000002068) #37
Eurasian red squirrel	MODERN SPECIES	12	B4GALNT2 (ENSSVLG00005020850) #9	IGF2BP1 (ENSSVLG00005020596) #10	GIP (ENSSVLG00005020522) #12	SNF8 (ENSSVLG00005020472) #13	ENSSVLG00005020450	UBE2Z (ENSSVLG00005020428) #14	ATP5MC1 (ENSSVLG00005020344) #15	CALCOCO2 (ENSSVLG00005020296)	TTLL6 (ENSSVLG00005020005) #16	HOXB13 (ENSSVLG00005019820) #17	HOXB9 (ENSSVLG00005019725) #18	HOXB8 (ENSSVLG00005019675) #19	HOXB7 (ENSSVLG00005019618)	HOXB6 (ENSSVLG00005019586) #20	HOXB5 (ENSSVLG00005019546) #21	HOXB4 (ENSSVLG00005019455) #22	HOXB3 (ENSSVLG00005019421) #23	HOXB2 (ENSSVLG00005019378) #24	HOXB1 (ENSSVLG00005019304) #25	SKAP1 (ENSSVLG00005019232) #26	SNX11 (ENSSVLG00005019122) #27	CBX1 (ENSSVLG00005019034) #28	NFE2L1 (ENSSVLG00005018798) #29	COPZ2 (ENSSVLG00005018641) #31	CDK5RAP3 (ENSSVLG00005018459) #32	PRR15L (ENSSVLG00005018399)	PNPO (ENSSVLG00005018295) #33	ENSSVLG00005018218 #34	SP6 (ENSSVLG00005018194) #35	SCRN2 (ENSSVLG00005018077) #36	LRRC46 (ENSSVLG00005018036) #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Myomorpha	ANCESTRAL SPECIES		ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Muroidea	ANCESTRAL SPECIES		ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.a.a ##28	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.`b.b	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.a.b ##28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Chinese hamster chok1gshd	MODERN SPECIES	33	B4galnt2 (ENSCGRG00001014272) #9	ENSCGRG00001000282 #10	Gip (ENSCGRG00001021533) #12	Snf8 (ENSCGRG00001000737) #13	Ube2z (ENSCGRG00001019150) #14	ENSCGRG00001022606	ENSCGRG00001010560	ENSCGRG00001011435	Ttll6 (ENSCGRG00001018398) #16	Hoxb13 (ENSCGRG00001015060) #17	Hoxb9 (ENSCGRG00001015314) #18	Hoxb8 (ENSCGRG00001020235) #19	Hoxb7 (ENSCGRG00001021590)	Hoxb6 (ENSCGRG00001015674) #20	Hoxb5 (ENSCGRG00001016167) #21	Hoxb4 (ENSCGRG00001022431) #22	Hoxb3 (ENSCGRG00001016667) #23	Hoxb2 (ENSCGRG00001017587) #24	Hoxb1 (ENSCGRG00001024619) #25	ENSCGRG00001023355 #26	ENSCGRG00001020759 #26	Snx11 (ENSCGRG00001022221) #27	Cbx1 (ENSCGRG00001014799) ##28	Nfe2l1 (ENSCGRG00001015287) #29	Copz2 (ENSCGRG00001014767) #31	Cdk5rap3 (ENSCGRG00001006966) #32	Prr15l (ENSCGRG00001008926)	Pnpo (ENSCGRG00001018189) #33	Sp2 (ENSCGRG00001010976) #34	Sp6 (ENSCGRG00001002797) #35	Scrn2 (ENSCGRG00001022143) #36
Golden Hamster	MODERN SPECIES	674	Phospho1 (ENSMAUG00000012074)	Abi3 (ENSMAUG00000021085) #7	Gngt2 (ENSMAUG00000019144) #8	B4galnt2 (ENSMAUG00000007916) #9	Gip (ENSMAUG00000009238) #12	Snf8 (ENSMAUG00000001857) #13	Ube2z (ENSMAUG00000007792) #14	ENSMAUG00000021751	Ttll6 (ENSMAUG00000020973) #16	Hoxb13 (ENSMAUG00000008407) #17	Hoxb9 (ENSMAUG00000017720) #18	Hoxb8 (ENSMAUG00000012636) #19	Hoxb7 (ENSMAUG00000021297)	Hoxb6 (ENSMAUG00000021423) #20	Hoxb5 (ENSMAUG00000021419) #21	Hoxb4 (ENSMAUG00000009367) #22	Hoxb3 (ENSMAUG00000011251) #23	Hoxb2 (ENSMAUG00000021979) #24	Hoxb1 (ENSMAUG00000013237) #25	Skap1 (ENSMAUG00000022191) #26	Snx11 (ENSMAUG00000021528) #27	ENSMAUG00000003463 ##28	Nfe2l1 (ENSMAUG00000020456) #29	Copz2 (ENSMAUG00000010560) #31	Cdk5rap3 (ENSMAUG00000007991) #32	Pnpo (ENSMAUG00000021706) #33	Sp2 (ENSMAUG00000019269) #34	Sp6 (ENSMAUG00000009667) #35	Scrn2 (ENSMAUG00000010014) #36	Lrrc46 (ENSMAUG00000019416) #37	Mrpl10 (ENSMAUG00000000820)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Prairie vole	MODERN SPECIES	114				ENSMOCG00000004266	ENSMOCG00000021226 #12	Snf8 (ENSMOCG00000016684) #13	Ube2z (ENSMOCG00000018241) #14	ENSMOCG00000013163	Ttll6 (ENSMOCG00000021089) #16	Hoxb13 (ENSMOCG00000021389) #17	Hoxb9 (ENSMOCG00000020312) #18	Hoxb8 (ENSMOCG00000018435) #19	Hoxb7 (ENSMOCG00000020820)	Hoxb6 (ENSMOCG00000020355) #20	Hoxb5 (ENSMOCG00000014523) #21	Hoxb4 (ENSMOCG00000022964) #22	Hoxb3 (ENSMOCG00000020739) #23	Hoxb2 (ENSMOCG00000014846) #24	Hoxb1 (ENSMOCG00000002452) #25	Skap1 (ENSMOCG00000018431) #26	Snx11 (ENSMOCG00000019303) #27	Cbx1 (ENSMOCG00000001520) #28	Nfe2l1 (ENSMOCG00000016002) #29	Copz2 (ENSMOCG00000022427) #31	Cdk5rap3 (ENSMOCG00000019534) #32	Prr15l (ENSMOCG00000006695)	Pnpo (ENSMOCG00000011655) #33	Sp2 (ENSMOCG00000020935) #34	Sp6 (ENSMOCG00000007065) #35	Scrn2 (ENSMOCG00000019511) #36	Lrrc46 (ENSMOCG00000016707) #37
Northern American deer mouse	MODERN SPECIES	21	Phospho1 (ENSPEMG00000026539)	Abi3 (ENSPEMG00000014242) #7	Gngt2 (ENSPEMG00000027491) #8	B4galnt2 (ENSPEMG00000020717) #9	Igf2bp1 (ENSPEMG00000021974) #10	Gip (ENSPEMG00000021184) #12	Snf8 (ENSPEMG00000022229) #13	Ube2z (ENSPEMG00000020953) #14	Atp5g1 (ENSPEMG00000020590)	ENSPEMG00000028729	ENSPEMG00000025676	Ttll6 (ENSPEMG00000021918) #16	Hoxb13 (ENSPEMG00000021511) #17	Hoxb9 (ENSPEMG00000027158) #18	Hoxb5 (ENSPEMG00000030101) #21	Hoxb4 (ENSPEMG00000029805) #22	Hoxb3 (ENSPEMG00000028692) #23	Hoxb2 (ENSPEMG00000029510) #24	Hoxb1 (ENSPEMG00000023977) #25	Skap1 (ENSPEMG00000000585) #26	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #27	Cbx1 (ENSPEMG00000020976) ##28	Nfe2l1 (ENSPEMG00000010512) #29	Copz2 (ENSPEMG00000011137) #31	Cdk5rap3 (ENSPEMG00000020712) #32	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436)	Pnpo (ENSPEMG00000025094) #33	Sp2 (ENSPEMG00000017112) #34	Sp6 (ENSPEMG00000001231) #35
Murinae	ANCESTRAL SPECIES	6	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Mus	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Steppe mouse	MODERN SPECIES	3291	Gngt2 (ENSMSIG00000019268) #8	B4galnt2 (ENSMSIG00000019230) #9	Igf2bp1 (ENSMSIG00000019193) #10	Gip (ENSMSIG00000019162) #12	Snf8 (ENSMSIG00000019072) #13	Ube2z (ENSMSIG00000019038) #14	Atp5g1 (ENSMSIG00000018986)	ENSMSIG00000018956	Ttll6 (ENSMSIG00000018881) #16	Hoxb13 (ENSMSIG00000018865) #17	Hoxb9 (ENSMSIG00000018823) #18	Hoxb8 (ENSMSIG00000018807) #19	Hoxb7 (ENSMSIG00000018805)	Hoxb6 (ENSMSIG00000018795) #20	Hoxb5 (ENSMSIG00000018787) #21	Hoxb4 (ENSMSIG00000018777) #22	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #23	Hoxb2 (ENSMSIG00000018769) #24	Hoxb1 (ENSMSIG00000018752) #25	Skap1 (ENSMSIG00000018601) #26	Snx11 (ENSMSIG00000018546) #27	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) #28	Nfe2l1 (ENSMSIG00000018374) #29	Copz2 (ENSMSIG00000018337) #31	Cdk5rap3 (ENSMSIG00000018309) #32	ENSMSIG00000018270	ENSMSIG00000018267 #33	Sp2 (ENSMSIG00000018237) #34	Sp6 (ENSMSIG00000018223) #35
spretus	MODERN SPECIES	2	Gngt2 (MGP_SPRETEiJ_G0017860) #8	B4galnt2 (MGP_SPRETEiJ_G0017861) #9	Igf2bp1 (MGP_SPRETEiJ_G0017862) #10	Gip (MGP_SPRETEiJ_G0017863) #12	Snf8 (MGP_SPRETEiJ_G0017864) #13	Ube2z (MGP_SPRETEiJ_G0017865) #14	Atp5g1 (MGP_SPRETEiJ_G0017866)	MGP_SPRETEiJ_G0017867	Ttll6 (MGP_SPRETEiJ_G0017868) #16	Hoxb13 (MGP_SPRETEiJ_G0017869) #17	Hoxb9 (MGP_SPRETEiJ_G0017870) #18	Hoxb8 (MGP_SPRETEiJ_G0017871) #19	Hoxb7 (MGP_SPRETEiJ_G0017872)	Hoxb6 (MGP_SPRETEiJ_G0017873) #20	Hoxb5 (MGP_SPRETEiJ_G0017874) #21	Hoxb4 (MGP_SPRETEiJ_G0017875) #22	Hoxb3 (MGP_SPRETEiJ_G0017876) #23	Hoxb2 (MGP_SPRETEiJ_G0017877) #24	Hoxb1 (MGP_SPRETEiJ_G0017878) #25	MGP_SPRETEiJ_G0017879 #26	Snx11 (MGP_SPRETEiJ_G0017880) #27	Cbx1 (MGP_SPRETEiJ_G0017881) #28	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #29	Copz2 (MGP_SPRETEiJ_G0017884) #31	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #32	Prr15l (MGP_SPRETEiJ_G0017886)	Pnpo (MGP_SPRETEiJ_G0017887) #33	Sp2 (MGP_SPRETEiJ_G0017888) #34	Sp6 (MGP_SPRETEiJ_G0017889) #35	Scrn2 (MGP_SPRETEiJ_G0017890) #36
Mouse	MODERN SPECIES	2	Gngt2 (ENSMUSG00000038811) #8	B4galnt2 (ENSMUSG00000013418) #9	Igf2bp1 (ENSMUSG00000013415) #10	Gip (ENSMUSG00000014351) #12	Snf8 (ENSMUSG00000006058) #13	Ube2z (ENSMUSG00000014349) #14	Atp5g1 (ENSMUSG00000006057)	Calcoco2 (ENSMUSG00000006056)	Ttll6 (ENSMUSG00000038756) #16	Hoxb13 (ENSMUSG00000049604) #17	Hoxb9 (ENSMUSG00000020875) #18	Hoxb8 (ENSMUSG00000056648) #19	Hoxb7 (ENSMUSG00000038721)	Hoxb6 (ENSMUSG00000000690) #20	Hoxb5 (ENSMUSG00000038700) #21	Hoxb4 (ENSMUSG00000038692) #22	Hoxb3 (ENSMUSG00000048763) #23	Hoxb2 (ENSMUSG00000075588) #24	Hoxb1 (ENSMUSG00000018973) #25	Skap1 (ENSMUSG00000057058) #26	Snx11 (ENSMUSG00000020876) #27	Cbx1 (ENSMUSG00000018666) #28	Nfe2l1 (ENSMUSG00000038615) #29	Copz2 (ENSMUSG00000018672) #31	Cdk5rap3 (ENSMUSG00000018669) #32	Prr15l (ENSMUSG00000047040)	Pnpo (ENSMUSG00000018659) #33	Sp2 (ENSMUSG00000018678) #34	Sp6 (ENSMUSG00000038560) #35	Scrn2 (ENSMUSG00000020877) #36	Lrrc46 (ENSMUSG00000020878) #37
Ryukyu mouse	MODERN SPECIES	2	Gngt2 (MGP_CAROLIEiJ_G0017014) #8	B4galnt2 (MGP_CAROLIEiJ_G0017015) #9	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #10	Gip (MGP_CAROLIEiJ_G0017017) #12	Snf8 (MGP_CAROLIEiJ_G0017018) #13	MGP_CAROLIEiJ_G0017019 #14	MGP_CAROLIEiJ_G0017020	MGP_CAROLIEiJ_G0017021	Ttll6 (MGP_CAROLIEiJ_G0017022) #16	Hoxb13 (MGP_CAROLIEiJ_G0017023) #17	Hoxb9 (MGP_CAROLIEiJ_G0017024) #18	Hoxb8 (MGP_CAROLIEiJ_G0017025) #19	Hoxb7 (MGP_CAROLIEiJ_G0017026)	Hoxb6 (MGP_CAROLIEiJ_G0017027) #20	Hoxb5 (MGP_CAROLIEiJ_G0017028) #21	Hoxb4 (MGP_CAROLIEiJ_G0017029) #22	Hoxb3 (MGP_CAROLIEiJ_G0017030) #23	Hoxb2 (MGP_CAROLIEiJ_G0017031) #24	Hoxb1 (MGP_CAROLIEiJ_G0017032) #25	Skap1 (MGP_CAROLIEiJ_G0017033) #26	Snx11 (MGP_CAROLIEiJ_G0017034) #27	Cbx1 (MGP_CAROLIEiJ_G0017035) #28	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #29	Copz2 (MGP_CAROLIEiJ_G0017038) #31	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #32	Prr15l (MGP_CAROLIEiJ_G0017040)	Pnpo (MGP_CAROLIEiJ_G0017041) #33	Sp2 (MGP_CAROLIEiJ_G0017042) #34	Sp6 (MGP_CAROLIEiJ_G0017043) #35	MGP_CAROLIEiJ_G0017044 #36
Shrew mouse	MODERN SPECIES	5	Gngt2 (MGP_PahariEiJ_G0018144) #8	B4galnt2 (MGP_PahariEiJ_G0018145) #9	MGP_PahariEiJ_G0018146 #10	Gip (MGP_PahariEiJ_G0018147) #12	Snf8 (MGP_PahariEiJ_G0018148) #13	Ube2z (MGP_PahariEiJ_G0018149) #14	Atp5g1 (MGP_PahariEiJ_G0018150)	MGP_PahariEiJ_G0018151	Ttll6 (MGP_PahariEiJ_G0018152) #16	Hoxb13 (MGP_PahariEiJ_G0018153) #17	Hoxb9 (MGP_PahariEiJ_G0018154) #18	Hoxb8 (MGP_PahariEiJ_G0018155) #19	Hoxb7 (MGP_PahariEiJ_G0018156)	Hoxb6 (MGP_PahariEiJ_G0018157) #20	Hoxb5 (MGP_PahariEiJ_G0018158) #21	Hoxb4 (MGP_PahariEiJ_G0018159) #22	Hoxb3 (MGP_PahariEiJ_G0018160) #23	Hoxb2 (MGP_PahariEiJ_G0018161) #24	Hoxb1 (MGP_PahariEiJ_G0018162) #25	Skap1 (MGP_PahariEiJ_G0018163) #26	Snx11 (MGP_PahariEiJ_G0018164) #27	Cbx1 (MGP_PahariEiJ_G0018165) #28	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #29	Copz2 (MGP_PahariEiJ_G0018168) #31	Cdk5rap3 (MGP_PahariEiJ_G0018169) #32	Prr15l (MGP_PahariEiJ_G0018170)	Pnpo (MGP_PahariEiJ_G0018171) #33	Sp2 (MGP_PahariEiJ_G0018172) #34	Sp6 (MGP_PahariEiJ_G0018173) #35	Scrn2 (MGP_PahariEiJ_G0018174) #36
Rat	MODERN SPECIES	1	Phospho1 (ENSRNOG00000005569)	Abi3 (ENSRNOG00000005575) #7	B4galnt2 (ENSRNOG00000067203) #9	Igf2bp1 (ENSRNOG00000006122) #10	Gip (ENSRNOG00000006306) #12	Snf8 (ENSRNOG00000006500) #13	Ube2z (ENSRNOG00000006868) #14	ENSRNOG00000066153	Ttll6 (ENSRNOG00000004939) #16	Hoxb13 (ENSRNOG00000007491) #17	Hoxb9 (ENSRNOG00000007573) #18	Hoxb8 (ENSRNOG00000007585) #19	Hoxb7 (ENSRNOG00000007611)	Hoxb6 (ENSRNOG00000007823) #20	Hoxb5 (ENSRNOG00000008010) #21	Hoxb4 (ENSRNOG00000008191) #22	Hoxb3 (ENSRNOG00000008313) #23	Hoxb2 (ENSRNOG00000008365) #24	Hoxb1 (ENSRNOG00000008506) #25	Skap1 (ENSRNOG00000023881) #26	Snx11 (ENSRNOG00000008642) #27	Cbx1 (ENSRNOG00000008689) #28	Nfe2l1 (ENSRNOG00000008830) #29	Copz2 (ENSRNOG00000009225) #31	Cdk5rap3 (ENSRNOG00000048747) #32	Prr15l (ENSRNOG00000049162)	Pnpo (ENSRNOG00000046493) #33	Sp2 (ENSRNOG00000010492) #34	Sp6 (ENSRNOG00000023551) #35	Scrn2 (ENSRNOG00000010214) #36	Lrrc46 (ENSRNOG00000009902) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Gngt2 (ENSNGAG00000001081) #8	B4galnt2 (ENSNGAG00000016426) #9	Igf2bp1 (ENSNGAG00000015679) #10	Gip (ENSNGAG00000020354) #12	Snf8 (ENSNGAG00000001366) #13	Ube2z (ENSNGAG00000024296) #14	ENSNGAG00000024212	ENSNGAG00000023585	Ttll6 (ENSNGAG00000011763) #16	Hoxb13 (ENSNGAG00000011053) #17	Hoxb9 (ENSNGAG00000010851) #18	Hoxb8 (ENSNGAG00000010647) #19	Hoxb7 (ENSNGAG00000010205)	Hoxb6 (ENSNGAG00000000973) #20	Hoxb5 (ENSNGAG00000023238) #21	Hoxb4 (ENSNGAG00000021768) #22	Hoxb3 (ENSNGAG00000020227) #23	Hoxb2 (ENSNGAG00000019089) #24	Hoxb1 (ENSNGAG00000018593) #25	Skap1 (ENSNGAG00000012571) #26	Snx11 (ENSNGAG00000010446) #27	Cbx1 (ENSNGAG00000006760) #28	Nfe2l1 (ENSNGAG00000000736) #29	Copz2 (ENSNGAG00000023713) #31	ENSNGAG00000000747 #32	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432)	Pnpo (ENSNGAG00000020016) #33	Sp2 (ENSNGAG00000017612) #34	Sp6 (ENSNGAG00000015868) #35	Scrn2 (ENSNGAG00000023806) #36
Lesser Egyptian jerboa	MODERN SPECIES	56	Gngt2 (ENSJJAG00000002044) #8	ENSJJAG00000002566	B4galnt2 (ENSJJAG00000006322) #9	Igf2bp1 (ENSJJAG00000002687) #10	Gip (ENSJJAG00000010688) #12	Snf8 (ENSJJAG00000006012) #13	ENSJJAG00000003530 #14	ENSJJAG00000010301	Ttll6 (ENSJJAG00000010253) #16	Hoxb13 (ENSJJAG00000010401) #17	Hoxb9 (ENSJJAG00000009821) #18	Hoxb8 (ENSJJAG00000002398) #19	Hoxb7 (ENSJJAG00000001284)	Hoxb6 (ENSJJAG00000000997) #20	Hoxb5 (ENSJJAG00000000763) #21	Hoxb4 (ENSJJAG00000002642) #22	Hoxb3 (ENSJJAG00000007804) #23	Hoxb2 (ENSJJAG00000009465) #24	Hoxb1 (ENSJJAG00000001073) #25	Skap1 (ENSJJAG00000003458) #26	ENSJJAG00000005754 #27	ENSJJAG00000007753 ##28	Nfe2l1 (ENSJJAG00000006432) #29	Copz2 (ENSJJAG00000001025) #31	ENSJJAG00000002511 #32	Prr15l (ENSJJAG00000006478)	Pnpo (ENSJJAG00000023608) #33	Sp2 (ENSJJAG00000003061) #34	Sp6 (ENSJJAG00000006452) #35	Scrn2 (ENSJJAG00000023635) #36	Lrrc46 (ENSJJAG00000010412) #37
Kangaroo rat	MODERN SPECIES	326	Phospho1 (ENSDORG00000002249)	Abi3 (ENSDORG00000002245) #7	Gngt2 (ENSDORG00000023588) #8	Igf2bp1 (ENSDORG00000014371) #10	Snf8 (ENSDORG00000009262) #13	Ube2z (ENSDORG00000009258) #14	ENSDORG00000008511 #15	ENSDORG00000028385	ENSDORG00000024585	Hoxb13 (ENSDORG00000008369) #17	Hoxb9 (ENSDORG00000027423) #18	Hoxb8 (ENSDORG00000007906) #19	Hoxb7 (ENSDORG00000007905)	Hoxb6 (ENSDORG00000023877) #20	Hoxb5 (ENSDORG00000007900) #21	Hoxb4 (ENSDORG00000007899) #22	Hoxb3 (ENSDORG00000007898) #23	Hoxb2 (ENSDORG00000007897) #24	Hoxb1 (ENSDORG00000007896) #25	Snx11 (ENSDORG00000029078) #27	Cbx1 (ENSDORG00000026399) #28	Nfe2l1 (ENSDORG00000000715) #29	Copz2 (ENSDORG00000013441) #31	Prr15l (ENSDORG00000027427)	Pnpo (ENSDORG00000014110) #33	Sp2 (ENSDORG00000014109) #34	Sp6 (ENSDORG00000026201) #35	Scrn2 (ENSDORG00000002361) #36	Osbpl7 (ENSDORG00000002354)	Tbx21 (ENSDORG00000013302)	Npepps (ENSDORG00000009627)
Primates	ANCESTRAL SPECIES	3	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00950000185410	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Tarsier	MODERN SPECIES	4193													HOXB7 (ENSTSYG00000028173)	HOXB6 (ENSTSYG00000031001) #20	HOXB5 (ENSTSYG00000032912) #21	HOXB4 (ENSTSYG00000026874) #22	ENSTSYG00000029322	HOXB3 (ENSTSYG00000035231) #23	HOXB2 (ENSTSYG00000004903) #24	HOXB1 (ENSTSYG00000004656) #25
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00390000007843.v #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00390000007843.v #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713.h.b #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713.h.a #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713.h.a.a.b #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713.h.a.a.b #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Pan	ANCESTRAL SPECIES	3	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713.h.a.a.b #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Chimpanzee	MODERN SPECIES	8	GIP (ENSPTRG00000009367) #12	SNF8 (ENSPTRG00000051067) #13	UBE2Z (ENSPTRG00000009365) #14	ENSPTRG00000051053	ATP5MC1 (ENSPTRG00000009364) #15	CALCOCO2 (ENSPTRG00000009363)	TTLL6 (ENSPTRG00000009361) #16	HOXB13 (ENSPTRG00000009360) #17	PRAC2 (ENSPTRG00000048455)	PRAC1 (ENSPTRG00000009359)	HOXB9 (ENSPTRG00000009358) #18	HOXB8 (ENSPTRG00000048497) #19	HOXB7 (ENSPTRG00000009357)	HOXB6 (ENSPTRG00000009356) #20	HOXB5 (ENSPTRG00000009355) #21	HOXB4 (ENSPTRG00000009354) #22	HOXB3 (ENSPTRG00000052423) #23	HOXB2 (ENSPTRG00000009352) #24	HOXB1 (ENSPTRG00000009351) #25	SKAP1 (ENSPTRG00000009350) #26	SNX11 (ENSPTRG00000009349) #27	CBX1 (ENSPTRG00000052115) #28	NFE2L1 (ENSPTRG00000022631) #29	COPZ2 (ENSPTRG00000009346) #31	CDK5RAP3 (ENSPTRG00000009345) #32	PRR15L (ENSPTRG00000047216)	PNPO (ENSPTRG00000009343) #33	SP2 (ENSPTRG00000009342) #34	SP6 (ENSPTRG00000009340) #35	SCRN2 (ENSPTRG00000009339) #36	LRRC46 (ENSPTRG00000009338) #37
Bonobo	MODERN SPECIES	8	IGF2BP1 (ENSPPAG00000040224) #10	ENSPPAG00000029732	SNF8 (ENSPPAG00000030822) #13	ENSPPAG00000029824	ENSPPAG00000001213 #14	ATP5MC1 (ENSPPAG00000039996) #15	CALCOCO2 (ENSPPAG00000037813)	TTLL6 (ENSPPAG00000036197) #16	HOXB13 (ENSPPAG00000027794) #17	PRAC1 (ENSPPAG00000014004)	HOXB9 (ENSPPAG00000028486) #18	HOXB8 (ENSPPAG00000034804) #19	HOXB7 (ENSPPAG00000010963)	HOXB6 (ENSPPAG00000032229) #20	HOXB5 (ENSPPAG00000039181) #21	HOXB4 (ENSPPAG00000040659) #22	HOXB3 (ENSPPAG00000032630) #23	HOXB2 (ENSPPAG00000027417) #24	HOXB1 (ENSPPAG00000039129) #25	SKAP1 (ENSPPAG00000039277) #26	SNX11 (ENSPPAG00000033185) #27	ENSPPAG00000030413 #28	NFE2L1 (ENSPPAG00000031737) #29	COPZ2 (ENSPPAG00000043351) #31	ENSPPAG00000029145 #32	PRR15L (ENSPPAG00000003316)	PNPO (ENSPPAG00000038148) #33	SP2 (ENSPPAG00000027065) #34	SP6 (ENSPPAG00000026169) #35	SCRN2 (ENSPPAG00000028214) #36	LRRC46 (ENSPPAG00000038983) #37
Human	MODERN SPECIES	8	IGF2BP1 (ENSG00000159217) #10	GIP (ENSG00000159224) #12	SNF8 (ENSG00000159210) #13	UBE2Z (ENSG00000159202) #14	ATP5MC1 (ENSG00000159199) #15	CALCOCO2 (ENSG00000136436)	TTLL6 (ENSG00000170703) #16	HOXB13 (ENSG00000159184) #17	PRAC2 (ENSG00000229637)	PRAC1 (ENSG00000159182)	HOXB9 (ENSG00000170689) #18	HOXB8 (ENSG00000120068) #19	HOXB7 (ENSG00000260027)	HOXB6 (ENSG00000108511) #20	HOXB5 (ENSG00000120075) #21	HOXB4 (ENSG00000182742) #22	HOXB3 (ENSG00000120093) #23	HOXB2 (ENSG00000173917) #24	HOXB1 (ENSG00000120094) #25	SKAP1 (ENSG00000141293) #26	SNX11 (ENSG00000002919) #27	CBX1 (ENSG00000108468) #28	NFE2L1 (ENSG00000082641) #29	COPZ2 (ENSG00000005243) #31	CDK5RAP3 (ENSG00000108465) #32	PRR15L (ENSG00000167183)	PNPO (ENSG00000108439) #33	SP2 (ENSG00000167182) #34	SP6 (ENSG00000189120) #35	SCRN2 (ENSG00000141295) #36	LRRC46 (ENSG00000141294) #37
Orangutan	MODERN SPECIES	8	IGF2BP1 (ENSPPYG00000008913) #10	GIP (ENSPPYG00000008912) #12	ENSPPYG00000008911 #13	UBE2Z (ENSPPYG00000032681) #14	ATP5MC1 (ENSPPYG00000008909) #15	CALCOCO2 (ENSPPYG00000008907)	TTLL6 (ENSPPYG00000008906) #16	HOXB13 (ENSPPYG00000008904) #17	ENSPPYG00000036609	PRAC1 (ENSPPYG00000008903)	HOXB9 (ENSPPYG00000008902) #18	HOXB8 (ENSPPYG00000038542) #19	HOXB7 (ENSPPYG00000008901)	HOXB6 (ENSPPYG00000008899) #20	HOXB5 (ENSPPYG00000008898) #21	HOXB4 (ENSPPYG00000008897) #22	HOXB3 (ENSPPYG00000008896) #23	HOXB2 (ENSPPYG00000008895) #24	HOXB1 (ENSPPYG00000008894) #25	SKAP1 (ENSPPYG00000008893) #26	SNX11 (ENSPPYG00000008892) #27	ENSPPYG00000008891 ##28	NFE2L1 (ENSPPYG00000036998) #29	ENSPPYG00000008889 #31	CDK5RAP3 (ENSPPYG00000008888) #32	PRR15L (ENSPPYG00000008887)	PNPO (ENSPPYG00000040967) #33	SP2 (ENSPPYG00000008885) #34	SP6 (ENSPPYG00000008884) #35	SCRN2 (ENSPPYG00000008883) #36	LRRC46 (ENSPPYG00000032761) #37
Gibbon	MODERN SPECIES	105	ABI3 (ENSNLEG00000002938) #7	ENSNLEG00000002931 #8	B4GALNT2 (ENSNLEG00000002844) #9	IGF2BP1 (ENSNLEG00000002786) #10	GIP (ENSNLEG00000002767) #12	SNF8 (ENSNLEG00000002743) #13	ENSNLEG00000002739 #14	ATP5MC1 (ENSNLEG00000002718) #15	CALCOCO2 (ENSNLEG00000002619)	TTLL6 (ENSNLEG00000002601) #16	HOXB13 (ENSNLEG00000002594) #17	ENSNLEG00000036120	ENSNLEG00000029075	HOXB6 (ENSNLEG00000002585) #20	HOXB5 (ENSNLEG00000002574) #21	HOXB4 (ENSNLEG00000002570) #22	HOXB2 (ENSNLEG00000002566) #24	ENSNLEG00000018815 #25	SKAP1 (ENSNLEG00000002519) #26	SNX11 (ENSNLEG00000002479) #27	ENSNLEG00000002435 #28	NFE2L1 (ENSNLEG00000002415) #29	ENSNLEG00000002409 #31	ENSNLEG00000002109 #32	PRR15L (ENSNLEG00000002102)	PNPO (ENSNLEG00000002062) #33	ENSNLEG00000002058 #34	SP6 (ENSNLEG00000002050) #35	SCRN2 (ENSNLEG00000001940) #36	LRRC46 (ENSNLEG00000001902) #37	MRPL10 (ENSNLEG00000001803)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Vervet Monkey	MODERN SPECIES	7	GNGT2 (ENSCSAG00000002475) #8	B4GALNT2 (ENSCSAG00000002479) #9	IGF2BP1 (ENSCSAG00000002487) #10	GIP (ENSCSAG00000002491) #12	SNF8 (ENSCSAG00000002494) #13	UBE2Z (ENSCSAG00000002496) #14	ATP5MC1 (ENSCSAG00000002502) #15	CALCOCO2 (ENSCSAG00000002506)	TTLL6 (ENSCSAG00000002511) #16	HOXB13 (ENSCSAG00000002517) #17	HOXB9 (ENSCSAG00000002521) #18	HOXB8 (ENSCSAG00000002523) #19	HOXB7 (ENSCSAG00000002524)	HOXB6 (ENSCSAG00000002526) #20	HOXB5 (ENSCSAG00000002529) #21	HOXB4 (ENSCSAG00000002530) #22	HOXB3 (ENSCSAG00000002533) #23	HOXB2 (ENSCSAG00000002536) #24	HOXB1 (ENSCSAG00000002538) #25	ENSCSAG00000019043	SKAP1 (ENSCSAG00000002542) #26	SNX11 (ENSCSAG00000002545) #27	CBX1 (ENSCSAG00000002547) #28	NFE2L1 (ENSCSAG00000002550) #29	COPZ2 (ENSCSAG00000002558) #31	CDK5RAP3 (ENSCSAG00000002562) #32	PRR15L (ENSCSAG00000019042)	PNPO (ENSCSAG00000002565) #33	SP2 (ENSCSAG00000002567) #34	SP6 (ENSCSAG00000019041) #35	SCRN2 (ENSCSAG00000002569) #36
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b.e #15	ENSGT00950000183025.a	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b.e #15	ENSGT00950000183025.a	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00980000199681	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Crab-eating macaque	MODERN SPECIES	7	UBE2Z (ENSMFAG00000045564) #14	ENSMFAG00000037178 #15	ENSMFAG00000055147	CALCOCO2 (ENSMFAG00000000840)	ENSMFAG00000030534	ENSMFAG00000059251	TTLL6 (ENSMFAG00000035518) #16	HOXB13 (ENSMFAG00000039799) #17	PRAC1 (ENSMFAG00000039547)	ENSMFAG00000047612	HOXB9 (ENSMFAG00000062545) #18	HOXB8 (ENSMFAG00000033418) #19	HOXB7 (ENSMFAG00000039298)	HOXB6 (ENSMFAG00000002294) #20	HOXB5 (ENSMFAG00000042418) #21	HOXB4 (ENSMFAG00000041000) #22	ENSMFAG00000062776	HOXB2 (ENSMFAG00000034146) #24	HOXB1 (ENSMFAG00000052359) #25	SKAP1 (ENSMFAG00000038763) #26	ENSMFAG00000048147	ENSMFAG00000047205	SNX11 (ENSMFAG00000001845) #27	CBX1 (ENSMFAG00000036790) #28	NFE2L1 (ENSMFAG00000035583) #29	COPZ2 (ENSMFAG00000045896) #31	CDK5RAP3 (ENSMFAG00000046364) #32	PRR15L (ENSMFAG00000030161)	PNPO (ENSMFAG00000039285) #33	SP2 (ENSMFAG00000038712) #34	ENSMFAG00000052999
Rhesus	MODERN SPECIES	7	IGF2BP1 (ENSMMUG00000011533) #10	GIP (ENSMMUG00000049405) #12	SNF8 (ENSMMUG00000021087) #13	UBE2Z (ENSMMUG00000057164) #14	ATP5MC1 (ENSMMUG00000013395) #15	ENSMMUG00000016305	TTLL6 (ENSMMUG00000003436) #16	HOXB13 (ENSMMUG00000060879) #17	PRAC1 (ENSMMUG00000053394)	HOXB9 (ENSMMUG00000052505) #18	HOXB8 (ENSMMUG00000020868) #19	HOXB7 (ENSMMUG00000055324)	HOXB6 (ENSMMUG00000062283) #20	HOXB5 (ENSMMUG00000051420) #21	ENSMMUG00000045203	HOXB4 (ENSMMUG00000052130) #22	HOXB2 (ENSMMUG00000057001) #24	HOXB1 (ENSMMUG00000022212) #25	SKAP1 (ENSMMUG00000050742) #26	SNX11 (ENSMMUG00000020658) #27	CBX1 (ENSMMUG00000019882) #28	NFE2L1 (ENSMMUG00000021935) #29	COPZ2 (ENSMMUG00000021934) #31	CDK5RAP3 (ENSMMUG00000004760) #32	PRR15L (ENSMMUG00000050551)	PNPO (ENSMMUG00000003325) #33	SP2 (ENSMMUG00000004765) #34	ENSMMUG00000053935	SP6 (ENSMMUG00000061952) #35	MRPL10 (ENSMMUG00000021486) #36	LRRC46 (ENSMMUG00000061605) #37
Pig-tailed macaque	MODERN SPECIES	494	GIP (ENSMNEG00000042307) #12	SNF8 (ENSMNEG00000032473) #13	UBE2Z (ENSMNEG00000040572) #14	ENSMNEG00000011359 #15	ENSMNEG00000027016	CALCOCO2 (ENSMNEG00000041410)	TTLL6 (ENSMNEG00000035034) #16	HOXB13 (ENSMNEG00000036275) #17	PRAC2 (ENSMNEG00000038796)	PRAC1 (ENSMNEG00000045191)	HOXB9 (ENSMNEG00000045476) #18	HOXB8 (ENSMNEG00000034944) #19	HOXB7 (ENSMNEG00000040001)	HOXB6 (ENSMNEG00000042554) #20	HOXB5 (ENSMNEG00000039003) #21	HOXB4 (ENSMNEG00000032435) #22	HOXB3 (ENSMNEG00000032425) #23	HOXB2 (ENSMNEG00000043416) #24	HOXB1 (ENSMNEG00000036848) #25	ENSMNEG00000033446	SKAP1 (ENSMNEG00000015541) #26	SNX11 (ENSMNEG00000034920) #27	CBX1 (ENSMNEG00000039720) #28	NFE2L1 (ENSMNEG00000037921) #29	COPZ2 (ENSMNEG00000038720) #31	CDK5RAP3 (ENSMNEG00000029039) #32	PRR15L (ENSMNEG00000028174)	PNPO (ENSMNEG00000037010) #33	SP2 (ENSMNEG00000029577) #34	SP6 (ENSMNEG00000023861) #35	SCRN2 (ENSMNEG00000031786) #36
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Olive baboon	MODERN SPECIES	8	IGF2BP1 (ENSPANG00000022833) #10	GIP (ENSPANG00000022832) #12	SNF8 (ENSPANG00000022831) #13	UBE2Z (ENSPANG00000022830) #14	ATP5MC1 (ENSPANG00000022880) #15	CALCOCO2 (ENSPANG00000022881)	ENSPANG00000049214	TTLL6 (ENSPANG00000022885) #16	HOXB13 (ENSPANG00000048407) #17	PRAC1 (ENSPANG00000034268)	HOXB9 (ENSPANG00000022896) #18	HOXB8 (ENSPANG00000022895) #19	HOXB7 (ENSPANG00000041701)	HOXB6 (ENSPANG00000022891) #20	HOXB5 (ENSPANG00000022889) #21	HOXB4 (ENSPANG00000022888) #22	ENSPANG00000045928	HOXB2 (ENSPANG00000034765) #24	HOXB1 (ENSPANG00000022886) #25	SKAP1 (ENSPANG00000022897) #26	ENSPANG00000026200	SNX11 (ENSPANG00000022898) #27	CBX1 (ENSPANG00000022906) #28	NFE2L1 (ENSPANG00000022904) #29	COPZ2 (ENSPANG00000022903) #31	CDK5RAP3 (ENSPANG00000022902) #32	PNPO (ENSPANG00000022924) #33	SP2 (ENSPANG00000022922) #34	SP6 (ENSPANG00000017158) #35	SCRN2 (ENSPANG00000022920) #36	LRRC46 (ENSPANG00000022918) #37
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00390000018696.n	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Sooty mangabey	MODERN SPECIES	564	GIP (ENSCATG00000031593) #12	SNF8 (ENSCATG00000038375) #13	UBE2Z (ENSCATG00000038755) #14	ATP5MC1 (ENSCATG00000030174) #15	CALCOCO2 (ENSCATG00000007708)	ENSCATG00000016293	TTLL6 (ENSCATG00000029768) #16	HOXB13 (ENSCATG00000041758) #17	PRAC1 (ENSCATG00000038550)	HOXB9 (ENSCATG00000002169) #18	HOXB8 (ENSCATG00000025318) #19	HOXB7 (ENSCATG00000042829)	HOXB6 (ENSCATG00000043342) #20	HOXB5 (ENSCATG00000027616) #21	HOXB3 (ENSCATG00000031126) #23	HOXB4 (ENSCATG00000040704) #22	HOXB2 (ENSCATG00000035238) #24	HOXB1 (ENSCATG00000035575) #25	SKAP1 (ENSCATG00000044458) #26	ENSCATG00000019817	SNX11 (ENSCATG00000030351) #27	ENSCATG00000034735 ##28	NFE2L1 (ENSCATG00000040775) #29	COPZ2 (ENSCATG00000042708) #31	CDK5RAP3 (ENSCATG00000006699) #32	PRR15L (ENSCATG00000020186)	PNPO (ENSCATG00000039934) #33	ENSCATG00000003341 #34	SP6 (ENSCATG00000020123) #35	SCRN2 (ENSCATG00000038846) #36	LRRC46 (ENSCATG00000031406) #37
Drill	MODERN SPECIES	1297	ENSMLEG00000043660	GIP (ENSMLEG00000032963) #12	SNF8 (ENSMLEG00000037501) #13	UBE2Z (ENSMLEG00000043345) #14	ATP5MC1 (ENSMLEG00000026746) #15	CALCOCO2 (ENSMLEG00000034129)	TTLL6 (ENSMLEG00000023683) #16	HOXB13 (ENSMLEG00000043860) #17	PRAC1 (ENSMLEG00000033309)	HOXB9 (ENSMLEG00000030602) #18	HOXB8 (ENSMLEG00000007179) #19	HOXB7 (ENSMLEG00000042331)	HOXB6 (ENSMLEG00000029580) #20	HOXB5 (ENSMLEG00000009970) #21	HOXB3 (ENSMLEG00000026268) #23	HOXB4 (ENSMLEG00000029897) #22	HOXB2 (ENSMLEG00000031955) #24	HOXB1 (ENSMLEG00000037557) #25	SKAP1 (ENSMLEG00000029308) #26	SNX11 (ENSMLEG00000039008) #27	CBX1 (ENSMLEG00000038745) #28	NFE2L1 (ENSMLEG00000039330) #29	COPZ2 (ENSMLEG00000039090) #31	CDK5RAP3 (ENSMLEG00000033869) #32	PRR15L (ENSMLEG00000020212)	PNPO (ENSMLEG00000040872) #33	SP2 (ENSMLEG00000032228) #34	SP6 (ENSMLEG00000027177) #35	SCRN2 (ENSMLEG00000041491) #36	LRRC46 (ENSMLEG00000031583) #37	MRPL10 (ENSMLEG00000042780)
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Black snub-nosed monkey	MODERN SPECIES	1661	IGF2BP1 (ENSRBIG00000035739) #10	GIP (ENSRBIG00000039886) #12	SNF8 (ENSRBIG00000038039) #13	UBE2Z (ENSRBIG00000038578) #14	ATP5MC1 (ENSRBIG00000026711) #15	CALCOCO2 (ENSRBIG00000035235)	TTLL6 (ENSRBIG00000035925) #16	HOXB13 (ENSRBIG00000035598) #17	PRAC2 (ENSRBIG00000032698)	PRAC1 (ENSRBIG00000041996)	HOXB9 (ENSRBIG00000035654) #18	HOXB8 (ENSRBIG00000043329) #19	HOXB7 (ENSRBIG00000039896)	HOXB6 (ENSRBIG00000029050) #20	HOXB5 (ENSRBIG00000015821) #21	HOXB4 (ENSRBIG00000036141) #22	HOXB3 (ENSRBIG00000036705) #23	HOXB2 (ENSRBIG00000029105) #24	HOXB1 (ENSRBIG00000041849) #25	SKAP1 (ENSRBIG00000042563) #26	SNX11 (ENSRBIG00000030129) #27	ENSRBIG00000027048 #28	NFE2L1 (ENSRBIG00000034817) #29	COPZ2 (ENSRBIG00000038810) #31	CDK5RAP3 (ENSRBIG00000039441) #32	PRR15L (ENSRBIG00000030176)	PNPO (ENSRBIG00000042160) #33	SP2 (ENSRBIG00000032526) #34	ENSRBIG00000039530	TXNDC2 (ENSRBIG00000040108)	ENSRBIG00000040735
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36	ENSGT00940000161315 #37
Cebidae	ANCESTRAL SPECIES	10	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000154298.a.b #15	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Marmoset	MODERN SPECIES	17	B4GALNT2 (ENSCJAG00000007247) #9	ENSCJAG00000079002	IGF2BP1 (ENSCJAG00000007258) #10	GIP (ENSCJAG00000007300) #12	SNF8 (ENSCJAG00000007322) #13	UBE2Z (ENSCJAG00000007326) #14	ATP5MC1 (ENSCJAG00000075375) #15	CALCOCO2 (ENSCJAG00000007375)	TTLL6 (ENSCJAG00000007395) #16	HOXB13 (ENSCJAG00000007437) #17	HOXB9 (ENSCJAG00000007442) #18	HOXB8 (ENSCJAG00000045730) #19	HOXB7 (ENSCJAG00000007457)	HOXB6 (ENSCJAG00000007467) #20	HOXB5 (ENSCJAG00000007472) #21	HOXB4 (ENSCJAG00000007480) #22	HOXB3 (ENSCJAG00000007487) #23	HOXB2 (ENSCJAG00000007494) #24	HOXB1 (ENSCJAG00000007496) #25	ENSCJAG00000038853	SKAP1 (ENSCJAG00000007504) #26	SNX11 (ENSCJAG00000039549) #27	CBX1 (ENSCJAG00000042052) #28	NFE2L1 (ENSCJAG00000007542) #29	ENSCJAG00000058197	COPZ2 (ENSCJAG00000007567) #31	CDK5RAP3 (ENSCJAG00000007669) #32	PRR15L (ENSCJAG00000044487)	PNPO (ENSCJAG00000007693) #33	SP2 (ENSCJAG00000007713) #34	SP6 (ENSCJAG00000043946) #35
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00390000005121 #12	ENSGT00390000007843.u.a #13	ENSGT01100000264599	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a.t.b	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00860000135909	ENSGT01050000247531	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590 #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Bolivian squirrel monkey	MODERN SPECIES	86	GIP (ENSSBOG00000020793) #12	SNF8 (ENSSBOG00000026186) #13	ENSSBOG00000028176	UBE2Z (ENSSBOG00000036224) #14	ENSSBOG00000028794	CALCOCO2 (ENSSBOG00000035276)	TTLL6 (ENSSBOG00000028908) #16	HOXB13 (ENSSBOG00000029964) #17	PRAC2 (ENSSBOG00000032603)	ENSSBOG00000030794	HOXB9 (ENSSBOG00000030218) #18	HOXB8 (ENSSBOG00000034884) #19	HOXB7 (ENSSBOG00000020028)	HOXB6 (ENSSBOG00000031900) #20	HOXB5 (ENSSBOG00000018198) #21	HOXB4 (ENSSBOG00000024432) #22	HOXB3 (ENSSBOG00000030844) #23	HOXB2 (ENSSBOG00000025070) #24	HOXB1 (ENSSBOG00000034875) #25	ENSSBOG00000019520	SKAP1 (ENSSBOG00000029434) #26	SNX11 (ENSSBOG00000026967) #27	ENSSBOG00000031880 ##28	NFE2L1 (ENSSBOG00000023867) #29	COPZ2 (ENSSBOG00000033633) #31	CDK5RAP3 (ENSSBOG00000033272) #32	PRR15L (ENSSBOG00000019240)	PNPO (ENSSBOG00000021213) #33	SP2 (ENSSBOG00000029098) #34	SP6 (ENSSBOG00000014210) #35	SCRN2 (ENSSBOG00000027391) #36
Capuchin	MODERN SPECIES	228								HOXB13 (ENSCCAG00000036871) #17	ENSCCAG00000036164	ENSCCAG00000019672	HOXB7 (ENSCCAG00000023947)	HOXB9 (ENSCCAG00000035938) #18	HOXB8 (ENSCCAG00000026051) #19	HOXB6 (ENSCCAG00000022842) #20	HOXB5 (ENSCCAG00000036867) #21	HOXB4 (ENSCCAG00000020311) #22	HOXB3 (ENSCCAG00000013598) #23	HOXB2 (ENSCCAG00000024035) #24	HOXB1 (ENSCCAG00000027667) #25	ENSCCAG00000019181	SKAP1 (ENSCCAG00000035663) #26	SNX11 (ENSCCAG00000030167) #27	CBX1 (ENSCCAG00000025085) #28	NFE2L1 (ENSCCAG00000029090) #29	COPZ2 (ENSCCAG00000021292) #31	CDK5RAP3 (ENSCCAG00000038053) #32	PNPO (ENSCCAG00000029175) #33	SP2 (ENSCCAG00000038047) #34	SP6 (ENSCCAG00000020330) #35	SCRN2 (ENSCCAG00000031435) #36	LRRC46 (ENSCCAG00000030568) #37
Mas night monkey	MODERN SPECIES	481	IGF2BP1 (ENSANAG00000022606) #10	GIP (ENSANAG00000030188) #12	SNF8 (ENSANAG00000032764) #13	UBE2Z (ENSANAG00000029636) #14	ATP5MC1 (ENSANAG00000024881) #15	ENSANAG00000020581	TTLL6 (ENSANAG00000031133) #16	PRAC2 (ENSANAG00000025557)	HOXB13 (ENSANAG00000023991) #17	ENSANAG00000030331	HOXB9 (ENSANAG00000035156) #18	HOXB8 (ENSANAG00000028346) #19	HOXB7 (ENSANAG00000025513)	HOXB6 (ENSANAG00000023964) #20	HOXB5 (ENSANAG00000024299) #21	HOXB4 (ENSANAG00000024005) #22	HOXB3 (ENSANAG00000032072) #23	HOXB2 (ENSANAG00000023626) #24	HOXB1 (ENSANAG00000032306) #25	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #26	SNX11 (ENSANAG00000022588) #27	ENSANAG00000036853 ##28	NFE2L1 (ENSANAG00000027606) #29	COPZ2 (ENSANAG00000023309) #31	CDK5RAP3 (ENSANAG00000021880) #32	PNPO (ENSANAG00000026080) #33	SP2 (ENSANAG00000032738) #34	SP6 (ENSANAG00000019338) #35	SCRN2 (ENSANAG00000021482) #36	LRRC46 (ENSANAG00000028496) #37
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00950000185410	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590.h #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00950000185410	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590.h #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Mouse lemur	MODERN SPECIES	7	B4GALNT2 (ENSMICG00000008596) #9	ENSMICG00000037104	ENSMICG00000013324 #10	GIP (ENSMICG00000013317) #12	SNF8 (ENSMICG00000013305) #13	UBE2Z (ENSMICG00000046102) #14	ENSMICG00000003414	CALCOCO2 (ENSMICG00000015330)	TTLL6 (ENSMICG00000007549) #16	HOXB13 (ENSMICG00000007546) #17	HOXB9 (ENSMICG00000038413) #18	HOXB8 (ENSMICG00000045961) #19	HOXB7 (ENSMICG00000007539)	HOXB6 (ENSMICG00000042216) #20	HOXB5 (ENSMICG00000047139) #21	HOXB4 (ENSMICG00000043173) #22	HOXB3 (ENSMICG00000007522) #23	HOXB2 (ENSMICG00000038222) #24	HOXB1 (ENSMICG00000048152) #25	SKAP1 (ENSMICG00000047158) #26	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #27	NFE2L1 (ENSMICG00000014716) #29	ENSMICG00000009510 #28	COPZ2 (ENSMICG00000014097) #31	CDK5RAP3 (ENSMICG00000014077) #32	ENSMICG00000014065 #33	SP2 (ENSMICG00000036051) #34	SP6 (ENSMICG00000047695) #35	SCRN2 (ENSMICG00000004823) #36	LRRC46 (ENSMICG00000004816) #37
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT01100000263525.b.a #8	ENSGT00390000006679.b #9	ENSGT00940000160427 #10	ENSGT00390000005121 #12	ENSGT00390000007843 #13	ENSGT00940000159091 #14	ENSGT00940000159720	ENSGT00950000183025.a	ENSGT00940000161434 #16	ENSGT00940000159029 #17	ENSGT00940000161386 #18	ENSGT00940000161529 #19	ENSGT00940000161230	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b #28	ENSGT00950000182892.a.b.a.a #29	ENSGT00390000004405.b #31	ENSGT00950000185410	ENSGT00390000000713 #32	ENSGT00940000154534.a	ENSGT00390000011219 #33	ENSGT00940000159590.h #34	ENSGT00940000161498 #35	ENSGT00390000013474.b.a #36
Coquerels sifaka	MODERN SPECIES	120	B4GALNT2 (ENSPCOG00000013984) #9	ENSPCOG00000018672	IGF2BP1 (ENSPCOG00000006475) #10	GIP (ENSPCOG00000024832) #12	SNF8 (ENSPCOG00000026895) #13	UBE2Z (ENSPCOG00000014816) #14	ENSPCOG00000008741	CALCOCO2 (ENSPCOG00000021998)	TTLL6 (ENSPCOG00000021391) #16	HOXB13 (ENSPCOG00000018182) #17	HOXB9 (ENSPCOG00000027130) #18	HOXB8 (ENSPCOG00000024853) #19	HOXB7 (ENSPCOG00000028248)	HOXB6 (ENSPCOG00000019931) #20	HOXB5 (ENSPCOG00000015692) #21	HOXB4 (ENSPCOG00000022963) #22	HOXB3 (ENSPCOG00000020113) #23	HOXB2 (ENSPCOG00000017380) #24	HOXB1 (ENSPCOG00000025930) #25	SKAP1 (ENSPCOG00000022221) #26	SNX11 (ENSPCOG00000011015) #27	ENSPCOG00000010902 #28	NFE2L1 (ENSPCOG00000021740) #29	COPZ2 (ENSPCOG00000018359) #31	CDK5RAP3 (ENSPCOG00000016598) #32	PNPO (ENSPCOG00000017906) #33	SP2 (ENSPCOG00000017198) #34	SP6 (ENSPCOG00000008529) #35	SCRN2 (ENSPCOG00000014438) #36	LRRC46 (ENSPCOG00000015829) #37	MRPL10 (ENSPCOG00000025492)
Greater bamboo lemur	MODERN SPECIES	168			IGF2BP1 (ENSPSMG00000020445) #10	GIP (ENSPSMG00000020432) #12	SNF8 (ENSPSMG00000020426) #13	UBE2Z (ENSPSMG00000020387) #14	ENSPSMG00000020369	CALCOCO2 (ENSPSMG00000020308)	ENSPSMG00000020243 #16	HOXB13 (ENSPSMG00000020237) #17	HOXB9 (ENSPSMG00000020232) #18	HOXB8 (ENSPSMG00000020227) #19	HOXB7 (ENSPSMG00000020218)	HOXB6 (ENSPSMG00000020209) #20	HOXB5 (ENSPSMG00000020200) #21	HOXB4 (ENSPSMG00000020187) #22	HOXB3 (ENSPSMG00000020182) #23	HOXB2 (ENSPSMG00000020176) #24	HOXB1 (ENSPSMG00000020167) #25	SKAP1 (ENSPSMG00000020161) #26	SNX11 (ENSPSMG00000020139) #27	CBX1 (ENSPSMG00000020119) #28
Bushbaby	MODERN SPECIES	133	B4GALNT2 (ENSOGAG00000003570) #9	IGF2BP1 (ENSOGAG00000001270) #10	GIP (ENSOGAG00000010130) #12	ENSOGAG00000001269 #13	UBE2Z (ENSOGAG00000001267) #14	ATP5MC1 (ENSOGAG00000011713) #15	CALCOCO2 (ENSOGAG00000011709)	TTLL6 (ENSOGAG00000011701) #16	HOXB13 (ENSOGAG00000032643) #17	ENSOGAG00000034464	HOXB9 (ENSOGAG00000008668) #18	HOXB8 (ENSOGAG00000029480) #19	HOXB7 (ENSOGAG00000008667)	HOXB6 (ENSOGAG00000008661) #20	HOXB5 (ENSOGAG00000032432) #21	HOXB4 (ENSOGAG00000033709) #22	HOXB3 (ENSOGAG00000032090) #23	HOXB2 (ENSOGAG00000029280) #24	HOXB1 (ENSOGAG00000031645) #25	SKAP1 (ENSOGAG00000015855) #26	SNX11 (ENSOGAG00000015854) #27	CBX1 (ENSOGAG00000005658) #28	NFE2L1 (ENSOGAG00000025191) #29	COPZ2 (ENSOGAG00000004954) #31	CDK5RAP3 (ENSOGAG00000004951) #32	PRR15L (ENSOGAG00000006187)	PNPO (ENSOGAG00000006186) #33	SP2 (ENSOGAG00000030380) #34	SP6 (ENSOGAG00000030282) #35	SCRN2 (ENSOGAG00000006181) #36	LRRC46 (ENSOGAG00000006177) #37