Mus	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #7	ENSGT00390000006679.b #8	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720 #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a #33	ENSGT00390000011219 #34	ENSGT00940000159590 #35	ENSGT00940000161498 #36	ENSGT00390000013474.b.a #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #7	ENSGT00390000006679.b #8	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720 #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a #33	ENSGT00390000011219 #34	ENSGT00940000159590 #35	ENSGT00940000161498 #36	ENSGT00390000013474.b.a #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT01100000263525.b.a #7	ENSGT00390000006679.b #8	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720 #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a #33	ENSGT00390000011219 #34	ENSGT00940000159590 #35	ENSGT00940000161498 #36	ENSGT00390000013474.b.a #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT01100000263525.b.a #7	ENSGT00390000006679.b #8	ENSGT00940000160427 #9	ENSGT00390000005121 #10	ENSGT00390000007843 #11	ENSGT00940000159091 #12	ENSGT00940000159720 #13	ENSGT00950000183025.a #14	ENSGT00940000161434 #15	ENSGT00940000159029 #16	ENSGT00940000161386 #17	ENSGT00940000161529 #18	ENSGT00940000161230 #19	ENSGT00940000161108 #20	ENSGT00940000158354 #21	ENSGT00940000162072 #22	ENSGT00940000159774 #23	ENSGT00940000155029.c.b #24	ENSGT00940000159503 #25	ENSGT00390000017856.b #26	ENSGT00940000160113 #27	ENSGT00940000154152.d.b.dc.b #28	ENSGT00940000153593.c.b.k #29	ENSGT00950000182892.a.b.a.a #30	ENSGT00390000004405.b #31	ENSGT00390000000713 #32	ENSGT00940000154534.a #33	ENSGT00390000011219 #34	ENSGT00940000159590 #35	ENSGT00940000161498 #36	ENSGT00390000013474.b.a #37
spretus	MODERN SPECIES	2	Gngt2 (MGP_SPRETEiJ_G0017860) #7	B4galnt2 (MGP_SPRETEiJ_G0017861) #8	Igf2bp1 (MGP_SPRETEiJ_G0017862) #9	Gip (MGP_SPRETEiJ_G0017863) #10	Snf8 (MGP_SPRETEiJ_G0017864) #11	Ube2z (MGP_SPRETEiJ_G0017865) #12	Atp5g1 (MGP_SPRETEiJ_G0017866) #13	MGP_SPRETEiJ_G0017867 #14	Ttll6 (MGP_SPRETEiJ_G0017868) #15	Hoxb13 (MGP_SPRETEiJ_G0017869) #16	Hoxb9 (MGP_SPRETEiJ_G0017870) #17	Hoxb8 (MGP_SPRETEiJ_G0017871) #18	Hoxb7 (MGP_SPRETEiJ_G0017872) #19	Hoxb6 (MGP_SPRETEiJ_G0017873) #20	Hoxb5 (MGP_SPRETEiJ_G0017874) #21	Hoxb4 (MGP_SPRETEiJ_G0017875) #22	Hoxb3 (MGP_SPRETEiJ_G0017876) #23	Hoxb2 (MGP_SPRETEiJ_G0017877) #24	Hoxb1 (MGP_SPRETEiJ_G0017878) #25	MGP_SPRETEiJ_G0017879 #26	Snx11 (MGP_SPRETEiJ_G0017880) #27	Cbx1 (MGP_SPRETEiJ_G0017881) #28	MGP_SPRETEiJ_G0017882 #29	Nfe2l1 (MGP_SPRETEiJ_G0017883) #30	Copz2 (MGP_SPRETEiJ_G0017884) #31	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #32	Prr15l (MGP_SPRETEiJ_G0017886) #33	Pnpo (MGP_SPRETEiJ_G0017887) #34	Sp2 (MGP_SPRETEiJ_G0017888) #35	Sp6 (MGP_SPRETEiJ_G0017889) #36	Scrn2 (MGP_SPRETEiJ_G0017890) #37
Steppe mouse	MODERN SPECIES	3291	Gngt2 (ENSMSIG00000019268) #7	B4galnt2 (ENSMSIG00000019230) #8	Igf2bp1 (ENSMSIG00000019193) #9	Gip (ENSMSIG00000019162) #10	Snf8 (ENSMSIG00000019072) #11	Ube2z (ENSMSIG00000019038) #12	Atp5g1 (ENSMSIG00000018986) #13	ENSMSIG00000018956 #14	Ttll6 (ENSMSIG00000018881) #15	Hoxb13 (ENSMSIG00000018865) #16	Hoxb9 (ENSMSIG00000018823) #17	Hoxb8 (ENSMSIG00000018807) #18	Hoxb7 (ENSMSIG00000018805) #19	Hoxb6 (ENSMSIG00000018795) #20	Hoxb5 (ENSMSIG00000018787) #21	Hoxb4 (ENSMSIG00000018777) #22	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #23	Hoxb2 (ENSMSIG00000018769) #24	Hoxb1 (ENSMSIG00000018752) #25	Skap1 (ENSMSIG00000018601) #26	Snx11 (ENSMSIG00000018546) #27	ENSMSIG00000018520 #29	Cbx1 (ENSMSIG00000018447) #28	Nfe2l1 (ENSMSIG00000018374) #30	Copz2 (ENSMSIG00000018337) #31	Cdk5rap3 (ENSMSIG00000018309) #32	ENSMSIG00000018270 #33	ENSMSIG00000018267 #34	Sp2 (ENSMSIG00000018237) #35	Sp6 (ENSMSIG00000018223) #36
Mouse	MODERN SPECIES	2	Gngt2 (ENSMUSG00000038811) #7	B4galnt2 (ENSMUSG00000013418) #8	Igf2bp1 (ENSMUSG00000013415) #9	Gip (ENSMUSG00000014351) #10	Snf8 (ENSMUSG00000006058) #11	Ube2z (ENSMUSG00000014349) #12	Atp5g1 (ENSMUSG00000006057) #13	Calcoco2 (ENSMUSG00000006056) #14	Ttll6 (ENSMUSG00000038756) #15	Hoxb13 (ENSMUSG00000049604) #16	Hoxb9 (ENSMUSG00000020875) #17	Hoxb8 (ENSMUSG00000056648) #18	Hoxb7 (ENSMUSG00000038721) #19	Hoxb6 (ENSMUSG00000000690) #20	Hoxb5 (ENSMUSG00000038700) #21	Hoxb4 (ENSMUSG00000038692) #22	Hoxb3 (ENSMUSG00000048763) #23	Hoxb2 (ENSMUSG00000075588) #24	Hoxb1 (ENSMUSG00000018973) #25	Skap1 (ENSMUSG00000057058) #26	Snx11 (ENSMUSG00000020876) #27	Cbx1 (ENSMUSG00000018666) #28	Nfe2l1 (ENSMUSG00000038615) #30	Copz2 (ENSMUSG00000018672) #31	Cdk5rap3 (ENSMUSG00000018669) #32	Prr15l (ENSMUSG00000047040) #33	Pnpo (ENSMUSG00000018659) #34	Sp2 (ENSMUSG00000018678) #35	Sp6 (ENSMUSG00000038560) #36	Scrn2 (ENSMUSG00000020877) #37	Lrrc46 (ENSMUSG00000020878)
Ryukyu mouse	MODERN SPECIES	2	Gngt2 (MGP_CAROLIEiJ_G0017014) #7	B4galnt2 (MGP_CAROLIEiJ_G0017015) #8	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #9	Gip (MGP_CAROLIEiJ_G0017017) #10	Snf8 (MGP_CAROLIEiJ_G0017018) #11	MGP_CAROLIEiJ_G0017019 #12	MGP_CAROLIEiJ_G0017020 #13	MGP_CAROLIEiJ_G0017021 #14	Ttll6 (MGP_CAROLIEiJ_G0017022) #15	Hoxb13 (MGP_CAROLIEiJ_G0017023) #16	Hoxb9 (MGP_CAROLIEiJ_G0017024) #17	Hoxb8 (MGP_CAROLIEiJ_G0017025) #18	Hoxb7 (MGP_CAROLIEiJ_G0017026) #19	Hoxb6 (MGP_CAROLIEiJ_G0017027) #20	Hoxb5 (MGP_CAROLIEiJ_G0017028) #21	Hoxb4 (MGP_CAROLIEiJ_G0017029) #22	Hoxb3 (MGP_CAROLIEiJ_G0017030) #23	Hoxb2 (MGP_CAROLIEiJ_G0017031) #24	Hoxb1 (MGP_CAROLIEiJ_G0017032) #25	Skap1 (MGP_CAROLIEiJ_G0017033) #26	Snx11 (MGP_CAROLIEiJ_G0017034) #27	Cbx1 (MGP_CAROLIEiJ_G0017035) #28	MGP_CAROLIEiJ_G0017036 #29	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #30	Copz2 (MGP_CAROLIEiJ_G0017038) #31	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #32	Prr15l (MGP_CAROLIEiJ_G0017040) #33	Pnpo (MGP_CAROLIEiJ_G0017041) #34	Sp2 (MGP_CAROLIEiJ_G0017042) #35	Sp6 (MGP_CAROLIEiJ_G0017043) #36	MGP_CAROLIEiJ_G0017044 #37
Shrew mouse	MODERN SPECIES	5	Gngt2 (MGP_PahariEiJ_G0018144) #7	B4galnt2 (MGP_PahariEiJ_G0018145) #8	MGP_PahariEiJ_G0018146 #9	Gip (MGP_PahariEiJ_G0018147) #10	Snf8 (MGP_PahariEiJ_G0018148) #11	Ube2z (MGP_PahariEiJ_G0018149) #12	Atp5g1 (MGP_PahariEiJ_G0018150) #13	MGP_PahariEiJ_G0018151 #14	Ttll6 (MGP_PahariEiJ_G0018152) #15	Hoxb13 (MGP_PahariEiJ_G0018153) #16	Hoxb9 (MGP_PahariEiJ_G0018154) #17	Hoxb8 (MGP_PahariEiJ_G0018155) #18	Hoxb7 (MGP_PahariEiJ_G0018156) #19	Hoxb6 (MGP_PahariEiJ_G0018157) #20	Hoxb5 (MGP_PahariEiJ_G0018158) #21	Hoxb4 (MGP_PahariEiJ_G0018159) #22	Hoxb3 (MGP_PahariEiJ_G0018160) #23	Hoxb2 (MGP_PahariEiJ_G0018161) #24	Hoxb1 (MGP_PahariEiJ_G0018162) #25	Skap1 (MGP_PahariEiJ_G0018163) #26	Snx11 (MGP_PahariEiJ_G0018164) #27	Cbx1 (MGP_PahariEiJ_G0018165) #28	MGP_PahariEiJ_G0018166 #29	Nfe2l1 (MGP_PahariEiJ_G0018167) #30	Copz2 (MGP_PahariEiJ_G0018168) #31	Cdk5rap3 (MGP_PahariEiJ_G0018169) #32	Prr15l (MGP_PahariEiJ_G0018170) #33	Pnpo (MGP_PahariEiJ_G0018171) #34	Sp2 (MGP_PahariEiJ_G0018172) #35	Sp6 (MGP_PahariEiJ_G0018173) #36	Scrn2 (MGP_PahariEiJ_G0018174) #37