Mammalia	ANCESTRAL SPECIES	26	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Theria	ANCESTRAL SPECIES	14	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Eutheria	ANCESTRAL SPECIES	12	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Glires	ANCESTRAL SPECIES	12	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00940000166431	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Marmotini	ANCESTRAL SPECIES	15	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00550000074807.d.s.a ##20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Marmotini_b	ANCESTRAL SPECIES	108	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Arctic ground squirrel	MODERN SPECIES	18	EGLN3 (ENSUPAG00010001862) #7	SPTSSA (ENSUPAG00010001850) #8	ENSUPAG00010001845 #9	EAPP (ENSUPAG00010001833) #10	SNX6 (ENSUPAG00010001786) #11	ENSUPAG00010001776 #12	BAZ1A (ENSUPAG00010001722) #13	ENSUPAG00010001684 #14	SRP54 (ENSUPAG00010001653) #15	FAM177A1 (ENSUPAG00010001644) #16	PPP2R3C (ENSUPAG00010001303) #17	ENSUPAG00010001286 #18	PRORP (ENSUPAG00010001241) #19	PSMA6 (ENSUPAG00010001196) #20	NFKBIA (ENSUPAG00010001173) #21	INSM2 (ENSUPAG00010001161) #22	RALGAPA1 (ENSUPAG00010000544) #23	ENSUPAG00010000520 #24	MBIP (ENSUPAG00010000502) #25	NKX2-1 (ENSUPAG00010000494) #26	NKX2-8 (ENSUPAG00010000486) #27	PAX9 (ENSUPAG00010000467) #28	SLC25A21 (ENSUPAG00010000420) #29
Squirrel	MODERN SPECIES	94	EGLN3 (ENSSTOG00000027368) #7	SPTSSA (ENSSTOG00000025158) #8	ENSSTOG00000005273 #10	SNX6 (ENSSTOG00000030590) #11	ENSSTOG00000001675 #12	BAZ1A (ENSSTOG00000012204) #13	ENSSTOG00000027145	ENSSTOG00000024975 #14	SRP54 (ENSSTOG00000016023) #15	FAM177A1 (ENSSTOG00000016027) #16	PPP2R3C (ENSSTOG00000009212) #17	ENSSTOG00000011766 #19	ENSSTOG00000023566 #18	ENSSTOG00000011774 ##20	NFKBIA (ENSSTOG00000007587) #21	INSM2 (ENSSTOG00000026540) #22	RALGAPA1 (ENSSTOG00000001249) #23	BRMS1L (ENSSTOG00000026072) #24	ENSSTOG00000034966	MBIP (ENSSTOG00000004226) #25	NKX2-1 (ENSSTOG00000023264) #26	NKX2-8 (ENSSTOG00000015719) #27	PAX9 (ENSSTOG00000015730) #28	SLC25A21 (ENSSTOG00000025764) #29	MIPOL1 (ENSSTOG00000011078)	FOXA1 (ENSSTOG00000023537)	SSTR1 (ENSSTOG00000026645)	CLEC14A (ENSSTOG00000019714)	ENSSTOG00000029091	SEC23A (ENSSTOG00000013426)	GEMIN2 (ENSSTOG00000006357)
Alpin marmot	MODERN SPECIES	1	EGLN3 (ENSMMMG00000006788) #7	SPTSSA (ENSMMMG00000006776) #8	ENSMMMG00000006766	EAPP (ENSMMMG00000006761) #10	ENSMMMG00000006742 #11	ENSMMMG00000006738 #11	ENSMMMG00000006731 #12	BAZ1A (ENSMMMG00000006696) #13	ENSMMMG00000006634 #14	SRP54 (ENSMMMG00000006580) #15	FAM177A1 (ENSMMMG00000006572) #16	ENSMMMG00000006558 #17	PRORP (ENSMMMG00000006469) #19	PSMA6 (ENSMMMG00000006439) ##20	ENSMMMG00000006428	INSM2 (ENSMMMG00000006417) #22	RALGAPA1 (ENSMMMG00000005888) #23	BRMS1L (ENSMMMG00000005865) #24	ENSMMMG00000005857	MBIP (ENSMMMG00000005828) #25	ENSMMMG00000005825 #26	NKX2-8 (ENSMMMG00000005805) #27	PAX9 (ENSMMMG00000005784) #28	SLC25A21 (ENSMMMG00000005767) #29	MIPOL1 (ENSMMMG00000005716)	FOXA1 (ENSMMMG00000005703)	TTC6 (ENSMMMG00000005491)	SSTR1 (ENSMMMG00000005443)	CLEC14A (ENSMMMG00000005437)	SEC23A (ENSMMMG00000005313)	ENSMMMG00000005294
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005003053 #8	ENSSVLG00005003042 #10	ENSSVLG00005003024	ENSSVLG00005002935 #11	ENSSVLG00005002890 #12	BAZ1A (ENSSVLG00005002845) #13	ENSSVLG00005002806 #14	SRP54 (ENSSVLG00005002707) #15	ENSSVLG00005002677	ENSSVLG00005002666	FAM177A1 (ENSSVLG00005002647) #16	PPP2R3C (ENSSVLG00005002629) #17	PRORP (ENSSVLG00005002581) #19	PSMA6 (ENSSVLG00005002482) #20	NFKBIA (ENSSVLG00005002436) #21	INSM2 (ENSSVLG00005002423) #22	RALGAPA1 (ENSSVLG00005001913) #23	ENSSVLG00005001677	BRMS1L (ENSSVLG00005001649) #24	ENSSVLG00005001633	MBIP (ENSSVLG00005001579) #25	NKX2-1 (ENSSVLG00005001554) #26	NKX2-8 (ENSSVLG00005001540) #27	PAX9 (ENSSVLG00005001528) #28	SLC25A21 (ENSSVLG00005001479) #29	MIPOL1 (ENSSVLG00005001432)	FOXA1 (ENSSVLG00005001397)	ENSSVLG00005001351	SSTR1 (ENSSVLG00005001318)	CLEC14A (ENSSVLG00005001310)	ENSSVLG00005001293
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000032861	ENSHGLG00000002049	ENSHGLG00000046910	EAPP (ENSHGLG00000035378) #10	SNX6 (ENSHGLG00000002236) #11	CFL2 (ENSHGLG00000001467) #12	ENSHGLG00000047884	BAZ1A (ENSHGLG00000007236) #13	ENSHGLG00000000845 #14	SRP54 (ENSHGLG00000002850) #15	FAM177A1 (ENSHGLG00000045828) #16	ENSHGLG00000002301 #17	PRORP (ENSHGLG00000001372) #19	ENSHGLG00000000520 #20	NFKBIA (ENSHGLG00000034266) #21	INSM2 (ENSHGLG00000049957) #22	RALGAPA1 (ENSHGLG00000001193) #23	ENSHGLG00000000511 #24	ENSHGLG00000000299	ENSHGLG00000046807	ENSHGLG00000041160	ENSHGLG00000001972 #25	ENSHGLG00000045119	NKX2-1 (ENSHGLG00000035457) #26	NKX2-8 (ENSHGLG00000001507) #27	PAX9 (ENSHGLG00000002029) #28	ENSHGLG00000001239 #29	PPP1R3E (ENSHGLG00000040376)	HOMEZ (ENSHGLG00000004788)	BCL2L2 (ENSHGLG00000003433)	ENSHGLG00000002927
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Guinea pig	MODERN SPECIES	23	ENSCPOG00000014222	EGLN3 (ENSCPOG00000013369) #7	SPTSSA (ENSCPOG00000038925) #8	ENSCPOG00000003005 #10	SNX6 (ENSCPOG00000006862) #11	CFL2 (ENSCPOG00000033162) #12	BAZ1A (ENSCPOG00000011951) #13	ENSCPOG00000039496	ENSCPOG00000026661 #14	SRP54 (ENSCPOG00000003691) #15	FAM177A1 (ENSCPOG00000035599) #16	PPP2R3C (ENSCPOG00000004781) #17	PRORP (ENSCPOG00000004789) #19	PSMA6 (ENSCPOG00000003107) #20	NFKBIA (ENSCPOG00000005455) #21	INSM2 (ENSCPOG00000013937) #22	RALGAPA1 (ENSCPOG00000013938) #23	BRMS1L (ENSCPOG00000031299) #24	MBIP (ENSCPOG00000004648) #25	NKX2-1 (ENSCPOG00000021321) #26	PAX9 (ENSCPOG00000010951) #28	SLC25A21 (ENSCPOG00000010953) #29	MIPOL1 (ENSCPOG00000015455)	ENSCPOG00000009294	SSTR1 (ENSCPOG00000003720)	CLEC14A (ENSCPOG00000022515)	SEC23A (ENSCPOG00000022376)	GEMIN2 (ENSCPOG00000011338)	TRAPPC6B (ENSCPOG00000008892)	ENSCPOG00000031897	PNN (ENSCPOG00000030068)
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000158051	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t.j #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00390000013771.cb
Degu	MODERN SPECIES	127	ENSODEG00000005621 #7	SPTSSA (ENSODEG00000005599) #8	ENSODEG00000005585 #11	CFL2 (ENSODEG00000005560) #12	ENSODEG00000005538	BAZ1A (ENSODEG00000005102) #13	ENSODEG00000004997 #14	SRP54 (ENSODEG00000004865) #15	FAM177A1 (ENSODEG00000004807) #16	PPP2R3C (ENSODEG00000004791) #17	ENSODEG00000004776	PRORP (ENSODEG00000007116) #19	ENSODEG00000007063 #20	NFKBIA (ENSODEG00000007044) #21	ENSODEG00000007033	INSM2 (ENSODEG00000006944) #22	ENSODEG00000006914	RALGAPA1 (ENSODEG00000006389) #23	ENSODEG00000006192 #24	ENSODEG00000006342	MBIP (ENSODEG00000006323) #25	NKX2-1 (ENSODEG00000006215) #26	NKX2-8 (ENSODEG00000006204) #27	ENSODEG00000006188	PAX9 (ENSODEG00000006146) #28	SLC25A21 (ENSODEG00000005898) #29	MIPOL1 (ENSODEG00000005761)	FOXA1 (ENSODEG00000005709)	TTC6 (ENSODEG00000005629)	SSTR1 (ENSODEG00000019331)
Long-tailed chinchilla	MODERN SPECIES	116	NPAS3 (ENSCLAG00000013939)	ENSCLAG00000011029	EGLN3 (ENSCLAG00000010720) #7	ENSCLAG00000012005	EAPP (ENSCLAG00000013007) #10	SNX6 (ENSCLAG00000012353) #11	ENSCLAG00000012876 #12	BAZ1A (ENSCLAG00000015173) #13	ENSCLAG00000012880 #14	SRP54 (ENSCLAG00000015076) #15	FAM177A1 (ENSCLAG00000015226) #16	ENSCLAG00000014794 #17	PRORP (ENSCLAG00000012615) #19	PSMA6 (ENSCLAG00000012840) #20	NFKBIA (ENSCLAG00000011667) #21	INSM2 (ENSCLAG00000011235) #22	RALGAPA1 (ENSCLAG00000009050) #23	BRMS1L (ENSCLAG00000009601) #24	MBIP (ENSCLAG00000010075) #25	NKX2-1 (ENSCLAG00000011429) #26	NKX2-8 (ENSCLAG00000010559) #27	ENSCLAG00000010109	PAX9 (ENSCLAG00000014256) #28	SLC25A21 (ENSCLAG00000010113) #29	MIPOL1 (ENSCLAG00000012585)	FOXA1 (ENSCLAG00000018012)	TTC6 (ENSCLAG00000010689)	SSTR1 (ENSCLAG00000013879)	SEC23A (ENSCLAG00000010520)	GEMIN2 (ENSCLAG00000008967)	TRAPPC6B (ENSCLAG00000009363)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Muroidea	ANCESTRAL SPECIES	54	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00900000143527	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Golden Hamster	MODERN SPECIES	716	Arhgap5 (ENSMAUG00000008108)	Akap6 (ENSMAUG00000014339)	Npas3 (ENSMAUG00000001084)	Egln3 (ENSMAUG00000012097) #7	Sptssa (ENSMAUG00000014218) #8	Eapp (ENSMAUG00000011998) #10	ENSMAUG00000014794 #11	Cfl2 (ENSMAUG00000000736) #12	Baz1a (ENSMAUG00000012163) #13	ENSMAUG00000014447 #15	ENSMAUG00000010631 #16	Ppp2r3c (ENSMAUG00000016875) #17	Prorp (ENSMAUG00000019281) #19	Psma6 (ENSMAUG00000019916) #20	Nfkbia (ENSMAUG00000006212) #21	Insm2 (ENSMAUG00000003017) #22	Ralgapa1 (ENSMAUG00000013201) #23	ENSMAUG00000009162	Brms1l (ENSMAUG00000020210) #24	ENSMAUG00000012140	Nkx2-1 (ENSMAUG00000019963) #26	Nkx2-9 (ENSMAUG00000020382) #27	Pax9 (ENSMAUG00000009067) #28	Slc25a21 (ENSMAUG00000003076) #29	Mipol1 (ENSMAUG00000008618)	Foxa1 (ENSMAUG00000013476)	Ttc6 (ENSMAUG00000004751)	Clec14a (ENSMAUG00000008282)	ENSMAUG00000000784	Sec23a (ENSMAUG00000008174)	Gemin2 (ENSMAUG00000017447)
Chinese hamster chok1gshd	MODERN SPECIES	2	Egln3 (ENSCGRG00001011120) #7	Sptssa (ENSCGRG00001009767) #8	Eapp (ENSCGRG00001019760) #10	Snx6 (ENSCGRG00001015718) #11	Cfl2 (ENSCGRG00001014849) #12	Baz1a (ENSCGRG00001013418) #13	ENSCGRG00001023351	2700097O09Rik (ENSCGRG00001023053) #14	ENSCGRG00001009525 #15	ENSCGRG00001007854 #16	ENSCGRG00001006281 #17	ENSCGRG00001003022 #19	Psma6 (ENSCGRG00001001597) #20	ENSCGRG00001024024 #21	Aldoart2 (ENSCGRG00001002722)	Insm2 (ENSCGRG00001024873) #22	Ralgapa1 (ENSCGRG00001024774) #23	ENSCGRG00001024105	Brms1l (ENSCGRG00001022168) #24	Mbip (ENSCGRG00001020947) #25	ENSCGRG00001014830	Nkx2-1 (ENSCGRG00001014035) #26	Nkx2-9 (ENSCGRG00001021293) #27	Pax9 (ENSCGRG00001020784) #28	Slc25a21 (ENSCGRG00001013187) #29	Mipol1 (ENSCGRG00001010153)	Foxa1 (ENSCGRG00001007733)	ENSCGRG00001006180	Ttc6 (ENSCGRG00001002787)	Sstr1 (ENSCGRG00001011700)	Clec14a (ENSCGRG00001008667)
Cricetidae_B	ANCESTRAL SPECIES	44	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00940000172098	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Prairie vole	MODERN SPECIES		ENSMOCG00000015865	ENSMOCG00000010297	Snx6 (ENSMOCG00000005706) #11	Cfl2 (ENSMOCG00000001143) #12	ENSMOCG00000021225 #13	ENSMOCG00000017192	ENSMOCG00000005425	ENSMOCG00000004049 #14	ENSMOCG00000000948 #15	ENSMOCG00000015069 #16	Ppp2r3c (ENSMOCG00000001928) #17	Prorp (ENSMOCG00000011267) #19	ENSMOCG00000002395 #20	Nfkbia (ENSMOCG00000022242) #21	ENSMOCG00000020598	Insm2 (ENSMOCG00000008493) #22	Ralgapa1 (ENSMOCG00000019684) #23	Brms1l (ENSMOCG00000015451) #24	Mbip (ENSMOCG00000010103) #25	Nkx2-1 (ENSMOCG00000018659) #26	Nkx2-9 (ENSMOCG00000017035) #27	Pax9 (ENSMOCG00000008657) #28	Slc25a21 (ENSMOCG00000013167) #29	Mipol1 (ENSMOCG00000016950)	Foxa1 (ENSMOCG00000012361)	ENSMOCG00000013226	ENSMOCG00000008283	Sstr1 (ENSMOCG00000018730)	Clec14a (ENSMOCG00000001508)	ENSMOCG00000015761	Sec23a (ENSMOCG00000004697)
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Mus	ANCESTRAL SPECIES	10	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00950000182803.B.d.a.i.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00950000182803.B.d.a.i.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a.d #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00950000182803.B.d.a.i.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Mus_C	ANCESTRAL SPECIES	11	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00640000092775	ENSGT00390000012799 #14	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.t #20	ENSGT00940000162733 #21	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00950000182803.B.d.a.i.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Steppe mouse	MODERN SPECIES	2686											ENSMSIG00000018375 #19	ENSMSIG00000018360	Psma6 (ENSMSIG00000018324) #20	Nfkbia (ENSMSIG00000018300) #21	Aldoart2 (ENSMSIG00000018294)	Insm2 (ENSMSIG00000018291) #22	Ralgapa1 (ENSMSIG00000017557) #23	Brms1l (ENSMSIG00000017523) #24
spretus	MODERN SPECIES	3	Egln3 (MGP_SPRETEiJ_G0018592) #7	Sptssa (MGP_SPRETEiJ_G0018593) #8	Eapp (MGP_SPRETEiJ_G0018594) #10	Snx6 (MGP_SPRETEiJ_G0018595) #11	Cfl2 (MGP_SPRETEiJ_G0018596) #12	Baz1a (MGP_SPRETEiJ_G0018597) #13	MGP_SPRETEiJ_G0018598	MGP_SPRETEiJ_G0018599 #14	MGP_SPRETEiJ_G0018600 #15	Fam177a (MGP_SPRETEiJ_G0018601) #16	Fam177a2 (MGP_SPRETEiJ_G0018602) #16	MGP_SPRETEiJ_G0018603 #19	Psma6 (MGP_SPRETEiJ_G0018604) #20	Nfkbia (MGP_SPRETEiJ_G0018605) #21	Aldoart2 (MGP_SPRETEiJ_G0018606)	Insm2 (MGP_SPRETEiJ_G0018607) #22	MGP_SPRETEiJ_G0018608 #23	Brms1l (MGP_SPRETEiJ_G0018609) #24	Mbip (MGP_SPRETEiJ_G0018610) #25	Nkx2-1 (MGP_SPRETEiJ_G0018611) #26	Nkx2-9 (MGP_SPRETEiJ_G0018612) #27	Pax9 (MGP_SPRETEiJ_G0018613) #28	Slc25a21 (MGP_SPRETEiJ_G0018614) #29	MGP_SPRETEiJ_G0018615	Mipol1 (MGP_SPRETEiJ_G0018616)	Foxa1 (MGP_SPRETEiJ_G0018617)	Ttc6 (MGP_SPRETEiJ_G0018618)	Sstr1 (MGP_SPRETEiJ_G0018619)	Clec14a (MGP_SPRETEiJ_G0018620)	Sec23a (MGP_SPRETEiJ_G0018621)	Gemin2 (MGP_SPRETEiJ_G0018622)
Mouse	MODERN SPECIES	3	Eapp (ENSMUSG00000054302) #10	Snx6 (ENSMUSG00000005656) #11	Cfl2 (ENSMUSG00000062929) #12	Baz1a (ENSMUSG00000035021) #13	2700097O09Rik (ENSMUSG00000062198) #14	Srp54a (ENSMUSG00000073079) #15	Fam177a (ENSMUSG00000095595) #16	Srp54b (ENSMUSG00000112449) #15	Fam177a2 (ENSMUSG00000094103) #16	Srp54c (ENSMUSG00000079108) #15	Ppp2r3c (ENSMUSG00000021022) #17	Prorp (ENSMUSG00000021023) #19	Psma6 (ENSMUSG00000021024) #20	Nfkbia (ENSMUSG00000021025) #21	Aldoart2 (ENSMUSG00000063129)	Insm2 (ENSMUSG00000045440) #22	Ralgapa1 (ENSMUSG00000021027) #23	Brms1l (ENSMUSG00000012076) #24	Mbip (ENSMUSG00000021028) #25	Nkx2-1 (ENSMUSG00000001496) #26	Nkx2-9 (ENSMUSG00000058669) #27	Pax9 (ENSMUSG00000001497) #28	Slc25a21 (ENSMUSG00000035472) #29	Prps1l3 (ENSMUSG00000079104)	Mipol1 (ENSMUSG00000047022)	Foxa1 (ENSMUSG00000035451)	Ttc6 (ENSMUSG00000046782)	Sstr1 (ENSMUSG00000035431)	Clec14a (ENSMUSG00000045930)	Sec23a (ENSMUSG00000020986)	Gemin2 (ENSMUSG00000060121)
Ryukyu mouse	MODERN SPECIES	3	Sptssa (MGP_CAROLIEiJ_G0017747) #8	Eapp (MGP_CAROLIEiJ_G0017748) #10	Snx6 (MGP_CAROLIEiJ_G0017749) #11	Cfl2 (MGP_CAROLIEiJ_G0017750) #12	Baz1a (MGP_CAROLIEiJ_G0017751) #13	MGP_CAROLIEiJ_G0017752	2700097O09Rik (MGP_CAROLIEiJ_G0017753) #14	MGP_CAROLIEiJ_G0017754 #15	MGP_CAROLIEiJ_G0017755 #16	MGP_CAROLIEiJ_G0017756 #16	Ppp2r3c (MGP_CAROLIEiJ_G0017757) #17	Prorp (MGP_CAROLIEiJ_G0017758) #19	Psma6 (MGP_CAROLIEiJ_G0017759) #20	Nfkbia (MGP_CAROLIEiJ_G0017760) #21	Aldoart2 (MGP_CAROLIEiJ_G0017761)	Insm2 (MGP_CAROLIEiJ_G0017762) #22	MGP_CAROLIEiJ_G0017763 #23	Brms1l (MGP_CAROLIEiJ_G0017764) #24	Mbip (MGP_CAROLIEiJ_G0017765) #25	Nkx2-1 (MGP_CAROLIEiJ_G0017766) #26	Nkx2-9 (MGP_CAROLIEiJ_G0017767) #27	Pax9 (MGP_CAROLIEiJ_G0017768) #28	Slc25a21 (MGP_CAROLIEiJ_G0017769) #29	MGP_CAROLIEiJ_G0017770	Mipol1 (MGP_CAROLIEiJ_G0017771)	Foxa1 (MGP_CAROLIEiJ_G0017772)	Ttc6 (MGP_CAROLIEiJ_G0017773)	Sstr1 (MGP_CAROLIEiJ_G0017774)	Clec14a (MGP_CAROLIEiJ_G0017775)	Sec23a (MGP_CAROLIEiJ_G0017776)	Gemin2 (MGP_CAROLIEiJ_G0017777)
Shrew mouse	MODERN SPECIES	20	Sptssa (MGP_PahariEiJ_G0029503) #8	Eapp (MGP_PahariEiJ_G0029504) #10	Snx6 (MGP_PahariEiJ_G0029505) #11	Cfl2 (MGP_PahariEiJ_G0029506) #12	Baz1a (MGP_PahariEiJ_G0029507) #13	MGP_PahariEiJ_G0029508	2700097O09Rik (MGP_PahariEiJ_G0029509) #14	MGP_PahariEiJ_G0029510 #15	MGP_PahariEiJ_G0029511 #16	MGP_PahariEiJ_G0029512 #16	Ppp2r3c (MGP_PahariEiJ_G0029513) #17	Prorp (MGP_PahariEiJ_G0029514) #19	Psma6 (MGP_PahariEiJ_G0029515) #20	Nfkbia (MGP_PahariEiJ_G0029516) #21	Aldoart2 (MGP_PahariEiJ_G0029517)	Insm2 (MGP_PahariEiJ_G0029518) #22	MGP_PahariEiJ_G0029519 #23	Brms1l (MGP_PahariEiJ_G0029520) #24	Mbip (MGP_PahariEiJ_G0029521) #25	Nkx2-1 (MGP_PahariEiJ_G0029522) #26	Nkx2-9 (MGP_PahariEiJ_G0029523) #27	Pax9 (MGP_PahariEiJ_G0029524) #28	Slc25a21 (MGP_PahariEiJ_G0029525) #29	MGP_PahariEiJ_G0029526	Mipol1 (MGP_PahariEiJ_G0029527)	Foxa1 (MGP_PahariEiJ_G0029528)	MGP_PahariEiJ_G0029529	Sstr1 (MGP_PahariEiJ_G0029530)	Clec14a (MGP_PahariEiJ_G0029531)	Sec23a (MGP_PahariEiJ_G0029532)	Gemin2 (MGP_PahariEiJ_G0029533)
Upper Galilee mountains blind mole rat	MODERN SPECIES	817													Prorp (ENSNGAG00000013070) #19	Psma6 (ENSNGAG00000010628) #20	ENSNGAG00000009289	Insm2 (ENSNGAG00000000506) #22	Ralgapa1 (ENSNGAG00000020930) #23	Brms1l (ENSNGAG00000002822) #24	ENSNGAG00000019423
Lesser Egyptian jerboa	MODERN SPECIES	41					ENSJJAG00000015489 #11	Cfl2 (ENSJJAG00000016196) #12	Baz1a (ENSJJAG00000015816) #13	ENSJJAG00000014755	2700097O09Rik (ENSJJAG00000022781) #14	ENSJJAG00000013417 #15	ENSJJAG00000012947 #16	Ppp2r3c (ENSJJAG00000018280) #17	ENSJJAG00000021340 #19	ENSJJAG00000000913 #20	ENSJJAG00000002334	Insm2 (ENSJJAG00000003814) #22	Ralgapa1 (ENSJJAG00000015267) #23	Brms1l (ENSJJAG00000013865) #24	Mbip (ENSJJAG00000013436) #25	Nkx2-1 (ENSJJAG00000013468) #26	Nkx2-9 (ENSJJAG00000019366) #27	Pax9 (ENSJJAG00000019632) #28	Slc25a21 (ENSJJAG00000019302) #29	ENSJJAG00000021169	Mipol1 (ENSJJAG00000005888)	Foxa1 (ENSJJAG00000000995)	Ttc6 (ENSJJAG00000015458)	ENSJJAG00000021196	Sstr1 (ENSJJAG00000012239)	ENSJJAG00000011829	Sec23a (ENSJJAG00000022207)
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00940000167277	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Rabbit	MODERN SPECIES	8	NPAS3 (ENSOCUG00000010632)	ENSOCUG00000008560 #7	ENSOCUG00000024362	EAPP (ENSOCUG00000003226) #10	SNX6 (ENSOCUG00000029421) #11	ENSOCUG00000027099	CFL2 (ENSOCUG00000009383) #12	BAZ1A (ENSOCUG00000012593) #13	ENSOCUG00000022589 #14	SRP54 (ENSOCUG00000007838) #15	FAM177A1 (ENSOCUG00000005763) #16	PPP2R3C (ENSOCUG00000005768) #17	PRORP (ENSOCUG00000016663) #19	PSMA6 (ENSOCUG00000015635) #20	NFKBIA (ENSOCUG00000015642) #21	INSM2 (ENSOCUG00000006804) #22	RALGAPA1 (ENSOCUG00000006807) #23	ENSOCUG00000029888	BRMS1L (ENSOCUG00000006825) #24	MBIP (ENSOCUG00000017091) #25	ENSOCUG00000032400	NKX2-8 (ENSOCUG00000015429) #27	PAX9 (ENSOCUG00000014321) #28	SLC25A21 (ENSOCUG00000014333) #29	ENSOCUG00000034488	MIPOL1 (ENSOCUG00000003198)	ENSOCUG00000035224	TTC6 (ENSOCUG00000015486)	ENSOCUG00000030860	SSTR1 (ENSOCUG00000008670)	CLEC14A (ENSOCUG00000008676)
Primates	ANCESTRAL SPECIES	2	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d	ENSGT00390000013814
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d	ENSGT00390000013814
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.l #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921.g #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814.e.b	ENSGT00390000012948.b
Cebidae	ANCESTRAL SPECIES	3	ENSGT00810000125473.B	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.l #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921.g #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814.e.b	ENSGT00390000012948.b
Marmoset	MODERN SPECIES	1	EAPP (ENSCJAG00000042239) #10	SNX6 (ENSCJAG00000044761) #11	CFL2 (ENSCJAG00000041665) #12	BAZ1A (ENSCJAG00000006421) #13	SRP54 (ENSCJAG00000006581) #15	FAM177A1 (ENSCJAG00000069586) #16	ENSCJAG00000062861	PPP2R3C (ENSCJAG00000041694) #17	PRORP (ENSCJAG00000006750) #19	PSMA6 (ENSCJAG00000041141) #20	ENSCJAG00000071935	ENSCJAG00000073389	ENSCJAG00000006806	ENSCJAG00000078340	ENSCJAG00000081814	INSM2 (ENSCJAG00000006816) #22	RALGAPA1 (ENSCJAG00000006821) #23	BRMS1L (ENSCJAG00000043608) #24	ENSCJAG00000069703	ENSCJAG00000084316	ENSCJAG00000062261	MBIP (ENSCJAG00000006938) #25	ENSCJAG00000047601	NKX2-1 (ENSCJAG00000055766) #26	NKX2-8 (ENSCJAG00000039564) #27	PAX9 (ENSCJAG00000051342) #28	SLC25A21 (ENSCJAG00000016449) #29	ENSCJAG00000070021	MIPOL1 (ENSCJAG00000016434)	FOXA1 (ENSCJAG00000040054)	TTC6 (ENSCJAG00000016408)
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00810000125473.B	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.k.a #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921.g #24	ENSGT00940000154191.i.a.r.b	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814.e.b
Bolivian squirrel monkey	MODERN SPECIES	52	NPAS3 (ENSSBOG00000021474)	EGLN3 (ENSSBOG00000032045) #7	ENSSBOG00000035596	SPTSSA (ENSSBOG00000035589) #8	ENSSBOG00000033003	SNX6 (ENSSBOG00000022890) #11	CFL2 (ENSSBOG00000014011) #12	BAZ1A (ENSSBOG00000028821) #13	ENSSBOG00000021974	SRP54 (ENSSBOG00000035145) #15	PPP2R3C (ENSSBOG00000021567) #17	PRORP (ENSSBOG00000024149) #19	ENSSBOG00000031078 #20	ENSSBOG00000010550	NFKBIA (ENSSBOG00000022575) #21	INSM2 (ENSSBOG00000020749) #22	RALGAPA1 (ENSSBOG00000030376) #23	ENSSBOG00000026566	ENSSBOG00000003699 #24	ENSSBOG00000023045	MBIP (ENSSBOG00000026011) #25	ENSSBOG00000026399	NKX2-1 (ENSSBOG00000031780) #26	ENSSBOG00000032187	NKX2-8 (ENSSBOG00000021640) #27	PAX9 (ENSSBOG00000032402) #28	SLC25A21 (ENSSBOG00000031959) #29	MIPOL1 (ENSSBOG00000031785)	FOXA1 (ENSSBOG00000033644)	ENSSBOG00000022608	ENSSBOG00000022130
Catarrhini	ANCESTRAL SPECIES	44													ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22
Hominoidea	ANCESTRAL SPECIES	12	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Gibbon	MODERN SPECIES	10	ENSNLEG00000032055	ENSNLEG00000032145	EGLN3 (ENSNLEG00000003247) #7	SPTSSA (ENSNLEG00000029839) #8	EAPP (ENSNLEG00000034702) #10	SNX6 (ENSNLEG00000003310) #11	CFL2 (ENSNLEG00000003417) #12	BAZ1A (ENSNLEG00000003440) #13	SRP54 (ENSNLEG00000003496) #15	PPP2R3C (ENSNLEG00000003591) #17	PRORP (ENSNLEG00000003691) #19	ENSNLEG00000032079	ENSNLEG00000028320 #20	ENSNLEG00000003724	NFKBIA (ENSNLEG00000003728) #21	INSM2 (ENSNLEG00000003723) #22	RALGAPA1 (ENSNLEG00000003739) #23	BRMS1L (ENSNLEG00000032667) #24	MBIP (ENSNLEG00000003876) #25	ENSNLEG00000003924	NKX2-1 (ENSNLEG00000003932) #26	ENSNLEG00000031324 #26	NKX2-8 (ENSNLEG00000003930) #27	ENSNLEG00000035940 #29	MIPOL1 (ENSNLEG00000003938)	ENSNLEG00000027139	ENSNLEG00000033881	TTC6 (ENSNLEG00000003944)	CLEC14A (ENSNLEG00000018678)	SEC23A (ENSNLEG00000003954)	GEMIN2 (ENSNLEG00000004013)
Hominidae	ANCESTRAL SPECIES	14	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Orangutan	MODERN SPECIES	5	AKAP6 (ENSPPYG00000005730)	NPAS3 (ENSPPYG00000005731)	EGLN3 (ENSPPYG00000005732) #7	SPTSSA (ENSPPYG00000005733) #8	EAPP (ENSPPYG00000005735) #10	SNX6 (ENSPPYG00000005736) #11	CFL2 (ENSPPYG00000005737) #12	BAZ1A (ENSPPYG00000005738) #13	SRP54 (ENSPPYG00000005739) #15	FAM177A1 (ENSPPYG00000005740) #16	PPP2R3C (ENSPPYG00000005741) #17	PRORP (ENSPPYG00000005742) #19	PSMA6 (ENSPPYG00000029719) #20	ENSPPYG00000005743 #21	ENSPPYG00000034833 #21	INSM2 (ENSPPYG00000005745) #22	RALGAPA1 (ENSPPYG00000005746) #23	BRMS1L (ENSPPYG00000005747) #24	MBIP (ENSPPYG00000005748) #25	ENSPPYG00000041488	NKX2-1 (ENSPPYG00000005749) #26	NKX2-8 (ENSPPYG00000005751) #27	PAX9 (ENSPPYG00000005755) #28	SLC25A21 (ENSPPYG00000005756) #29	MIPOL1 (ENSPPYG00000005757)	FOXA1 (ENSPPYG00000005758)	TTC6 (ENSPPYG00000005760)	SSTR1 (ENSPPYG00000005761)	SEC23A (ENSPPYG00000005763)	GEMIN2 (ENSPPYG00000005764)	TRAPPC6B (ENSPPYG00000030448)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135.i #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Gorilla	MODERN SPECIES	5	ENSGGOG00000037716	EGLN3 (ENSGGOG00000014900) #7	EAPP (ENSGGOG00000007784) #10	SNX6 (ENSGGOG00000007659) #11	CFL2 (ENSGGOG00000038032) #12	ENSGGOG00000008915 #13	ENSGGOG00000028571	SRP54 (ENSGGOG00000002926) #15	ENSGGOG00000041904	ENSGGOG00000012223 #17	PRORP (ENSGGOG00000012248) #19	PSMA6 (ENSGGOG00000013201) #20	ENSGGOG00000036672	NFKBIA (ENSGGOG00000009397) #21	ENSGGOG00000039181	INSM2 (ENSGGOG00000041074) #22	RALGAPA1 (ENSGGOG00000008354) #23	ENSGGOG00000037483	BRMS1L (ENSGGOG00000006388) #24	MBIP (ENSGGOG00000006321) #25	ENSGGOG00000025257	NKX2-1 (ENSGGOG00000026494) #26	NKX2-8 (ENSGGOG00000011660) #27	PAX9 (ENSGGOG00000001528) #28	SLC25A21 (ENSGGOG00000001529) #29	MIPOL1 (ENSGGOG00000016981)	TTC6 (ENSGGOG00000040556)	SSTR1 (ENSGGOG00000012937)	CLEC14A (ENSGGOG00000012458)	ENSGGOG00000043481	SEC23A (ENSGGOG00000001141)
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135.i #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814.e.b	ENSGT00390000012948.b
Human	MODERN SPECIES	5	ARHGAP5 (ENSG00000100852)	AKAP6 (ENSG00000151320)	NPAS3 (ENSG00000151322)	EGLN3 (ENSG00000129521) #7	SPTSSA (ENSG00000165389) #8	EAPP (ENSG00000129518) #10	SNX6 (ENSG00000129515) #11	CFL2 (ENSG00000165410) #12	BAZ1A (ENSG00000198604) #13	SRP54 (ENSG00000100883) #15	FAM177A1 (ENSG00000151327) #16	PPP2R3C (ENSG00000092020) #17	PRORP (ENSG00000100890) #19	PSMA6 (ENSG00000100902) #20	NFKBIA (ENSG00000100906) #21	INSM2 (ENSG00000168348) #22	RALGAPA1 (ENSG00000174373) #23	BRMS1L (ENSG00000100916) #24	MBIP (ENSG00000151332) #25	NKX2-1 (ENSG00000136352) #26	NKX2-8 (ENSG00000136327) #27	PAX9 (ENSG00000198807) #28	SLC25A21 (ENSG00000183032) #29	MIPOL1 (ENSG00000151338)	FOXA1 (ENSG00000129514)	TTC6 (ENSG00000139865)	SSTR1 (ENSG00000139874)	CLEC14A (ENSG00000176435)	SEC23A (ENSG00000100934)	GEMIN2 (ENSG00000092208)	TRAPPC6B (ENSG00000182400)
Pan	ANCESTRAL SPECIES	8	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00390000006922.m.a	ENSGT00940000158135.i #13	ENSGT00550000074824 #15	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00800000124303.d	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Chimpanzee	MODERN SPECIES	5	ENSPTRG00000043856	EGLN3 (ENSPTRG00000006250) #7	SPTSSA (ENSPTRG00000006251) #8	EAPP (ENSPTRG00000006252) #10	SNX6 (ENSPTRG00000006253) #11	CFL2 (ENSPTRG00000006254) #12	ENSPTRG00000051817	BAZ1A (ENSPTRG00000006255) #13	FAM177A1 (ENSPTRG00000006259) #15	PPP2R3C (ENSPTRG00000006261) #17	PRORP (ENSPTRG00000006263) #19	PSMA6 (ENSPTRG00000006264) #20	ENSPTRG00000043789	NFKBIA (ENSPTRG00000006265) #21	ENSPTRG00000041063	INSM2 (ENSPTRG00000006267) #22	RALGAPA1 (ENSPTRG00000006268) #23	BRMS1L (ENSPTRG00000006272) #24	MBIP (ENSPTRG00000006273) #25	ENSPTRG00000042346	SFTA3 (ENSPTRG00000039290)	NKX2-1 (ENSPTRG00000006275) #26	NKX2-8 (ENSPTRG00000006277) #27	PAX9 (ENSPTRG00000006281) #28	SLC25A21 (ENSPTRG00000006283) #29	MIPOL1 (ENSPTRG00000006284)	FOXA1 (ENSPTRG00000006285)	TTC6 (ENSPTRG00000006287)	SSTR1 (ENSPTRG00000043424)	CLEC14A (ENSPTRG00000022713)	SEC23A (ENSPTRG00000006290)
Bonobo	MODERN SPECIES	5	NPAS3 (ENSPPAG00000028096)	ENSPPAG00000004989	EGLN3 (ENSPPAG00000018135) #7	EAPP (ENSPPAG00000030095) #10	SNX6 (ENSPPAG00000037141) #11	CFL2 (ENSPPAG00000007558) #12	ENSPPAG00000008100	BAZ1A (ENSPPAG00000026030) #13	SRP54 (ENSPPAG00000017434) #15	PPP2R3C (ENSPPAG00000030301) #17	PRORP (ENSPPAG00000040873) #19	ENSPPAG00000024947 #20	ENSPPAG00000006620	ENSPPAG00000041784 #21	ENSPPAG00000039340	ENSPPAG00000013978 #22	RALGAPA1 (ENSPPAG00000038560) #23	ENSPPAG00000027690	BRMS1L (ENSPPAG00000029997) #24	MBIP (ENSPPAG00000036495) #25	ENSPPAG00000032511	ENSPPAG00000033395	ENSPPAG00000008831 #26	NKX2-8 (ENSPPAG00000038570) #27	PAX9 (ENSPPAG00000028767) #28	SLC25A21 (ENSPPAG00000040612) #29	MIPOL1 (ENSPPAG00000029142)	TTC6 (ENSPPAG00000037589)	SSTR1 (ENSPPAG00000007349)	CLEC14A (ENSPPAG00000002565)	SEC23A (ENSPPAG00000028407)
Cercopithecidae	ANCESTRAL SPECIES	54													ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814.e.b
Vervet Monkey	MODERN SPECIES	16	ENSCSAG00000019400	NPAS3 (ENSCSAG00000015658)	EGLN3 (ENSCSAG00000015653) #7	SPTSSA (ENSCSAG00000015651) #8	EAPP (ENSCSAG00000015646) #10	SNX6 (ENSCSAG00000015642) #11	ENSCSAG00000015638 #12	BAZ1A (ENSCSAG00000015625) #13	SRP54 (ENSCSAG00000015575) #15	FAM177A1 (ENSCSAG00000015569) #16	PPP2R3C (ENSCSAG00000015566) #17	PRORP (ENSCSAG00000015561) #19	PSMA6 (ENSCSAG00000015552) #20	NFKBIA (ENSCSAG00000015526) #21	ENSCSAG00000015517	INSM2 (ENSCSAG00000019401) #22	RALGAPA1 (ENSCSAG00000015500) #23	BRMS1L (ENSCSAG00000015489) #24	MBIP (ENSCSAG00000015484) #25	ENSCSAG00000015474	NKX2-1 (ENSCSAG00000015472) #26	NKX2-8 (ENSCSAG00000015469) #27	PAX9 (ENSCSAG00000015463) #28	SLC25A21 (ENSCSAG00000015457) #29	MIPOL1 (ENSCSAG00000015453)	FOXA1 (ENSCSAG00000015444)	TTC6 (ENSCSAG00000015431)	SSTR1 (ENSCSAG00000019402)	CLEC14A (ENSCSAG00000019403)	SEC23A (ENSCSAG00000015417)	TRAPPC6B (ENSCSAG00000015408)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000002414.`b.a.a.f	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00510000047030.xb.b.f	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814.e.b
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.a.b.b.b	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT01030000240244	ENSGT00390000006916.d
Rhesus	MODERN SPECIES	17	SPTSSA (ENSMMUG00000049364) #8	ENSMMUG00000018813	ENSMMUG00000054885	EAPP (ENSMMUG00000056506) #10	ENSMMUG00000054661	SNX6 (ENSMMUG00000012576) #11	CFL2 (ENSMMUG00000039560) #12	BAZ1A (ENSMMUG00000058073) #13	SRP54 (ENSMMUG00000015073) #15	FAM177A1 (ENSMMUG00000060802) #16	PPP2R3C (ENSMMUG00000003530) #17	PRORP (ENSMMUG00000019875) #19	PSMA6 (ENSMMUG00000016544) #20	NFKBIA (ENSMMUG00000020374) #21	RALGAPA1 (ENSMMUG00000016487) #23	INSM2 (ENSMMUG00000016483) #22	BRMS1L (ENSMMUG00000010665) #24	MBIP (ENSMMUG00000004856) #25	ENSMMUG00000041260	NKX2-1 (ENSMMUG00000009641) #26	NKX2-8 (ENSMMUG00000061299) #27	PAX9 (ENSMMUG00000009648) #28	SLC25A21 (ENSMMUG00000009649) #29	MIPOL1 (ENSMMUG00000009651)	FOXA1 (ENSMMUG00000056013)	TTC6 (ENSMMUG00000011316)	SSTR1 (ENSMMUG00000039337)	CLEC14A (ENSMMUG00000051249)	ENSMMUG00000051750	SEC23A (ENSMMUG00000003184)	ENSMMUG00000062599
Crab-eating macaque	MODERN SPECIES	17	EAPP (ENSMFAG00000002843) #10	SNX6 (ENSMFAG00000040770) #11	ENSMFAG00000053943	ENSMFAG00000062650	CFL2 (ENSMFAG00000001352) #12	ENSMFAG00000049174	BAZ1A (ENSMFAG00000043129) #13	ENSMFAG00000054611	SRP54 (ENSMFAG00000044371) #15	FAM177A1 (ENSMFAG00000062033) #16	PPP2R3C (ENSMFAG00000033038) #17	PRORP (ENSMFAG00000001453) #19	ENSMFAG00000058533	PSMA6 (ENSMFAG00000043654) #20	NFKBIA (ENSMFAG00000017605) #21	INSM2 (ENSMFAG00000009696) #22	RALGAPA1 (ENSMFAG00000043770) #23	ENSMFAG00000060032	ENSMFAG00000050171	BRMS1L (ENSMFAG00000037936) #24	MBIP (ENSMFAG00000043899) #25	ENSMFAG00000042355	NKX2-1 (ENSMFAG00000046342) #26	NKX2-8 (ENSMFAG00000057996) #27	PAX9 (ENSMFAG00000004012) #28	SLC25A21 (ENSMFAG00000044432) #29	MIPOL1 (ENSMFAG00000034576)	ENSMFAG00000038734	SSTR1 (ENSMFAG00000009385)	CLEC14A (ENSMFAG00000057409)	ENSMFAG00000051153
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000002414.`b.a.a.f	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Olive baboon	MODERN SPECIES	17	AKAP6 (ENSPANG00000022397)	NPAS3 (ENSPANG00000021333)	EGLN3 (ENSPANG00000047484) #7	ENSPANG00000039055	SPTSSA (ENSPANG00000044993) #8	EAPP (ENSPANG00000018424) #10	ENSPANG00000022563 #11	CFL2 (ENSPANG00000021779) #12	BAZ1A (ENSPANG00000021332) #13	SRP54 (ENSPANG00000023853) #15	FAM177A1 (ENSPANG00000038043) #16	PPP2R3C (ENSPANG00000024268) #17	PRORP (ENSPANG00000025053) #19	PSMA6 (ENSPANG00000029375) #20	NFKBIA (ENSPANG00000021245) #21	INSM2 (ENSPANG00000021247) #22	RALGAPA1 (ENSPANG00000014246) #23	BRMS1L (ENSPANG00000015154) #24	ENSPANG00000037543	ENSPANG00000039092	MBIP (ENSPANG00000020627) #25	ENSPANG00000016613	NKX2-1 (ENSPANG00000022396) #26	NKX2-8 (ENSPANG00000011344) #27	PAX9 (ENSPANG00000000932) #28	SLC25A21 (ENSPANG00000000933) #29	ENSPANG00000046296	ENSPANG00000046336	MIPOL1 (ENSPANG00000014245)	FOXA1 (ENSPANG00000049555)	TTC6 (ENSPANG00000025550)
Cercopithecinae_d	ANCESTRAL SPECIES	144				ENSGT00940000154940.pb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000002414.`b.a.a.f	ENSGT00550000074824 #15	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B.c #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00910000147746	ENSGT00390000006916.d	ENSGT00390000013814.e.b
Drill	MODERN SPECIES	1154						SNX6 (ENSMLEG00000036632) #11	CFL2 (ENSMLEG00000005793) #12	BAZ1A (ENSMLEG00000034802) #13	ENSMLEG00000023104	SRP54 (ENSMLEG00000042251) #15	ENSMLEG00000036153 #17	PRORP (ENSMLEG00000037448) #19	PSMA6 (ENSMLEG00000038391) #20	ENSMLEG00000037274	ENSMLEG00000016637	INSM2 (ENSMLEG00000038100) #22	ENSMLEG00000035181 #23
Sooty mangabey	MODERN SPECIES	140				SNX6 (ENSCATG00000044145) #11	ENSCATG00000030945	ENSCATG00000036742	ENSCATG00000044463	BAZ1A (ENSCATG00000008423) #13	SRP54 (ENSCATG00000034083) #15	PPP2R3C (ENSCATG00000031385) #17	PRORP (ENSCATG00000030233) #19	PSMA6 (ENSCATG00000037836) #20	ENSCATG00000016830	NFKBIA (ENSCATG00000041261) #21	ENSCATG00000034484	INSM2 (ENSCATG00000021263) #22	RALGAPA1 (ENSCATG00000015032) #23	ENSCATG00000037870	BRMS1L (ENSCATG00000040333) #24	MBIP (ENSCATG00000034328) #25	ENSCATG00000044870	NKX2-1 (ENSCATG00000038404) #26	NKX2-8 (ENSCATG00000044217) #27	PAX9 (ENSCATG00000014987) #28	SLC25A21 (ENSCATG00000030129) #29	ENSCATG00000033141	MIPOL1 (ENSCATG00000011644)	FOXA1 (ENSCATG00000039617)	TTC6 (ENSCATG00000023473)	SSTR1 (ENSCATG00000021900)	ENSCATG00000015231
Rhinopithecus	ANCESTRAL SPECIES	193								ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00940000162733 #21	ENSGT00940000165187	ENSGT00940000162391 #22	ENSGT00950000183139.B.e #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00560000078697	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00910000147746	ENSGT00390000006916.d	ENSGT00390000013814.e.b
Black snub-nosed monkey	MODERN SPECIES	168										PPP2R3C (ENSRBIG00000010043) #17	PRORP (ENSRBIG00000033787) #19	PSMA6 (ENSRBIG00000028290) #20	ENSRBIG00000033981	NFKBIA (ENSRBIG00000043081) #21	ENSRBIG00000029472	INSM2 (ENSRBIG00000037192) #22	RALGAPA1 (ENSRBIG00000032351) #23	BRMS1L (ENSRBIG00000041726) #24	MBIP (ENSRBIG00000033809) #25	ENSRBIG00000044400	NKX2-1 (ENSRBIG00000020016) #26	NKX2-8 (ENSRBIG00000041917) #27	PAX9 (ENSRBIG00000032010) #28	SLC25A21 (ENSRBIG00000030161) #29	MIPOL1 (ENSRBIG00000033858)	ENSRBIG00000042944
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Lemuriformes	ANCESTRAL SPECIES	17	ENSGT00940000160815	ENSGT00940000155306.a	ENSGT00940000156060	ENSGT00940000159085	ENSGT00550000074972	ENSGT00940000155241	ENSGT00940000157726	ENSGT00390000018312	ENSGT00390000014621	ENSGT00420000029923	ENSGT00390000014570	ENSGT00940000154875	ENSGT00940000157863	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00940000154836	ENSGT00940000156310	ENSGT00390000015725	ENSGT00940000160077	ENSGT01070000253775.a.d.a.b.b	ENSGT00390000005336	ENSGT00940000158931	ENSGT00940000160568.n	ENSGT00950000182835.c.d	ENSGT00390000008296.b.a.b	ENSGT00390000012715.b	ENSGT00390000012850	ENSGT00390000003710.c.a.b.a.a	ENSGT00390000001709	ENSGT01020000230394.e.a.a.b.a.a.a
Lemuriformes_a	ANCESTRAL SPECIES	6	ENSGT00940000160815	ENSGT00940000155306.a	ENSGT00940000156060	ENSGT00940000159085	ENSGT00550000074972	ENSGT00940000155241	ENSGT00940000157726	ENSGT00390000018312	ENSGT00390000014621	ENSGT00420000029923	ENSGT00390000014570	ENSGT00940000154875	ENSGT00940000157863	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00940000154836	ENSGT00940000156310	ENSGT00390000015725	ENSGT00940000160077	ENSGT01070000253775.a.d.a.b.b	ENSGT00390000005336	ENSGT00940000158931	ENSGT00940000160568.n	ENSGT00950000182835.c.d	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00390000003710.c.a.b.a.a	ENSGT00390000001709	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000162557
Greater bamboo lemur	MODERN SPECIES	680				SNX6 (ENSPSMG00000018927) #11	CFL2 (ENSPSMG00000018974) #12	BAZ1A (ENSPSMG00000019008) #13	ENSPSMG00000019024	ENSPSMG00000019037 #14	SRP54 (ENSPSMG00000019076) #15	FAM177A1 (ENSPSMG00000019109) #16	PPP2R3C (ENSPSMG00000019142) #17	PRORP (ENSPSMG00000019161) #19	ENSPSMG00000019171	PSMA6 (ENSPSMG00000019216) #20	ENSPSMG00000019273	INSM2 (ENSPSMG00000019283) #22	RALGAPA1 (ENSPSMG00000019347) #23	BRMS1L (ENSPSMG00000019369) #24	ENSPSMG00000019376	MAP3K7 (ENSPSMG00000019473)
Bushbaby	MODERN SPECIES	167	NPAS3 (ENSOGAG00000014886)	EGLN3 (ENSOGAG00000014893) #7	ENSOGAG00000001254	SPTSSA (ENSOGAG00000030285) #8	EAPP (ENSOGAG00000012492) #10	SNX6 (ENSOGAG00000008020) #11	CFL2 (ENSOGAG00000032321) #12	BAZ1A (ENSOGAG00000002234) #13	ENSOGAG00000031729 #14	SRP54 (ENSOGAG00000012188) #15	FAM177A1 (ENSOGAG00000008488) #16	PPP2R3C (ENSOGAG00000008489) #17	PRORP (ENSOGAG00000024550) #19	PSMA6 (ENSOGAG00000008492) #20	NFKBIA (ENSOGAG00000003716) #21	INSM2 (ENSOGAG00000024855) #22	RALGAPA1 (ENSOGAG00000014961) #23	BRMS1L (ENSOGAG00000016974) #24	MBIP (ENSOGAG00000013109) #25	NKX2-1 (ENSOGAG00000028624) #26	NKX2-8 (ENSOGAG00000030043) #27	PAX9 (ENSOGAG00000013131) #28	SLC25A21 (ENSOGAG00000013132) #29	MIPOL1 (ENSOGAG00000012837)	FOXA1 (ENSOGAG00000031319)	ENSOGAG00000009640	SSTR1 (ENSOGAG00000008554)	CLEC14A (ENSOGAG00000025794)	SEC23A (ENSOGAG00000004563)	GEMIN2 (ENSOGAG00000007906)	TRAPPC6B (ENSOGAG00000007907)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746
Eulipotyphla	ANCESTRAL SPECIES	599																ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24
Hedgehog	MODERN SPECIES	6337																ENSEEUG00000015087 #22	RALGAPA1 (ENSEEUG00000002794) #23
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Suina	ANCESTRAL SPECIES	30	ENSGT00940000158051	ENSGT01020000230798	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT01070000257281	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Chacoan peccary	MODERN SPECIES	883	AKAP6 (ENSCWAG00000020720)	NPAS3 (ENSCWAG00000020800)	EGLN3 (ENSCWAG00000021081) #7	SPTSSA (ENSCWAG00000021089) #8	EAPP (ENSCWAG00000021095) #10	SNX6 (ENSCWAG00000021128) #11	CFL2 (ENSCWAG00000021171) #12	BAZ1A (ENSCWAG00000021194) #13	ENSCWAG00000021220 #14	SRP54 (ENSCWAG00000021240) #15	FAM177A1 (ENSCWAG00000021278) #16	PPP2R3C (ENSCWAG00000021289) #17	PRORP (ENSCWAG00000021308) #19	PSMA6 (ENSCWAG00000021327) #20	NFKBIA (ENSCWAG00000021339) #21	INSM2 (ENSCWAG00000021348) #22	RALGAPA1 (ENSCWAG00000021428) #23	BRMS1L (ENSCWAG00000021744) #24	MBIP (ENSCWAG00000021783) #25	NKX2-1 (ENSCWAG00000021794) #26	ENSCWAG00000021798	NKX2-8 (ENSCWAG00000021799) #27	PAX9 (ENSCWAG00000021805) #28	SLC25A21 (ENSCWAG00000021812) #29	ENSCWAG00000021827	MIPOL1 (ENSCWAG00000021836)	ENSCWAG00000021845	FOXA1 (ENSCWAG00000003793)	TTC6 (ENSCWAG00000003844)	SSTR1 (ENSCWAG00000004108)	CLEC14A (ENSCWAG00000004118)
Pig	MODERN SPECIES	15	NPAS3 (ENSSSCG00000001964)	ENSSSCG00000036652	EGLN3 (ENSSSCG00000001963) #7	SPTSSA (ENSSSCG00000060304) #8	EAPP (ENSSSCG00000001960) #10	SNX6 (ENSSSCG00000040912) #11	CFL2 (ENSSSCG00000001959) #12	BAZ1A (ENSSSCG00000001958) #13	ENSSSCG00000062223 #14	SRP54 (ENSSSCG00000001955) #15	FAM177A1 (ENSSSCG00000034753) #16	PPP2R3C (ENSSSCG00000031498) #17	PRORP (ENSSSCG00000001950) #19	PSMA6 (ENSSSCG00000054516) #20	NFKBIA (ENSSSCG00000001952) #21	INSM2 (ENSSSCG00000001949) #22	ENSSSCG00000047970	RALGAPA1 (ENSSSCG00000032377) #23	BRMS1L (ENSSSCG00000001947) #24	ENSSSCG00000044591	MBIP (ENSSSCG00000001946) #25	NKX2-1 (ENSSSCG00000001945) #26	NKX2-8 (ENSSSCG00000001944) #27	PAX9 (ENSSSCG00000001942) #28	ENSSSCG00000047378	SLC25A21 (ENSSSCG00000039317) #29	MIPOL1 (ENSSSCG00000039714)	FOXA1 (ENSSSCG00000037634)	TTC6 (ENSSSCG00000001939)	SSTR1 (ENSSSCG00000001938)	CLEC14A (ENSSSCG00000023760)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000015821.h	ENSGT00390000002766.b.b #8	ENSGT00390000001332.m #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.m #10	ENSGT00940000178928	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT01010000228841	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.m #10	ENSGT00940000178928	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT01010000228841	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Narwhal	MODERN SPECIES	308	NPAS3 (ENSMMNG00015019078)	EGLN3 (ENSMMNG00015019291) #7	SPTSSA (ENSMMNG00015019349) #8	ENSMMNG00015019371 #10	ENSMMNG00015019404	SNX6 (ENSMMNG00015019443) #11	CFL2 (ENSMMNG00015019505) #12	BAZ1A (ENSMMNG00015019553) #13	ENSMMNG00015019653 #14	SRP54 (ENSMMNG00015019691) #15	FAM177A1 (ENSMMNG00015019748) #16	PPP2R3C (ENSMMNG00015019785) #17	PRORP (ENSMMNG00015019841) #19	PSMA6 (ENSMMNG00015019949) #20	NFKBIA (ENSMMNG00015020016) #21	INSM2 (ENSMMNG00015020039) #22	RALGAPA1 (ENSMMNG00015020129) #23	ENSMMNG00015020326	BRMS1L (ENSMMNG00015020339) #24	MBIP (ENSMMNG00015020439) #25	NKX2-1 (ENSMMNG00015020464) #26	NKX2-8 (ENSMMNG00015020479) #27	PAX9 (ENSMMNG00015020489) #28	SLC25A21 (ENSMMNG00015020522) #29	MIPOL1 (ENSMMNG00015020574)	FOXA1 (ENSMMNG00015020593)	TTC6 (ENSMMNG00015020631)	ENSMMNG00015020710	SSTR1 (ENSMMNG00015020719)	CLEC14A (ENSMMNG00015020728)	SEC23A (ENSMMNG00015020745)
Beluga whale	MODERN SPECIES	44	EGLN3 (ENSDLEG00000012687) #7	ENSDLEG00000012666	SPTSSA (ENSDLEG00000012661) #8	ENSDLEG00000012640	ENSDLEG00000012618 #10	SNX6 (ENSDLEG00000012585) #11	CFL2 (ENSDLEG00000012575) #12	BAZ1A (ENSDLEG00000012480) #13	ENSDLEG00000012461 #14	SRP54 (ENSDLEG00000012450) #15	FAM177A1 (ENSDLEG00000012441) #16	PPP2R3C (ENSDLEG00000012415) #17	ENSDLEG00000012386 #19	PSMA6 (ENSDLEG00000012355) #20	NFKBIA (ENSDLEG00000012342) #21	INSM2 (ENSDLEG00000012328) #22	RALGAPA1 (ENSDLEG00000012252) #23	BRMS1L (ENSDLEG00000012215) #24	MBIP (ENSDLEG00000012196) #25	NKX2-1 (ENSDLEG00000012182) #26	NKX2-8 (ENSDLEG00000012175) #27	PAX9 (ENSDLEG00000012153) #28	SLC25A21 (ENSDLEG00000012128) #29	MIPOL1 (ENSDLEG00000012110)	FOXA1 (ENSDLEG00000012098)	ENSDLEG00000012089	TTC6 (ENSDLEG00000011919)	SSTR1 (ENSDLEG00000011886)	CLEC14A (ENSDLEG00000011878)	SEC23A (ENSDLEG00000011846)	GEMIN2 (ENSDLEG00000011824)
Vaquita	MODERN SPECIES	11	ENSPSNG00000018446	SPTSSA (ENSPSNG00000018482) #8	ENSPSNG00000018496	ENSPSNG00000018519 #10	ENSPSNG00000018564	SNX6 (ENSPSNG00000018667) #11	ENSPSNG00000018765 #12	BAZ1A (ENSPSNG00000018849) #13	ENSPSNG00000018927 #14	SRP54 (ENSPSNG00000018994) #15	FAM177A1 (ENSPSNG00000019175) #16	PPP2R3C (ENSPSNG00000019237) #17	PRORP (ENSPSNG00000019340) #19	PSMA6 (ENSPSNG00000019488) #20	NFKBIA (ENSPSNG00000019593) #21	INSM2 (ENSPSNG00000019636) #22	RALGAPA1 (ENSPSNG00000007885) #23	BRMS1L (ENSPSNG00000008049) #24	MBIP (ENSPSNG00000008119) #25	NKX2-1 (ENSPSNG00000008183) #26	PAX9 (ENSPSNG00000008283) #28	SLC25A21 (ENSPSNG00000008340) #29	MIPOL1 (ENSPSNG00000008504)	FOXA1 (ENSPSNG00000008543)	TTC6 (ENSPSNG00000008621)	ENSPSNG00000008951	SSTR1 (ENSPSNG00000008986)	CLEC14A (ENSPSNG00000009006)	SEC23A (ENSPSNG00000009053)	GEMIN2 (ENSPSNG00000009372)	TRAPPC6B (ENSPSNG00000009909)
Dolphin	MODERN SPECIES	1057											FAM177A1 (ENSTTRG00000007959) #16	PPP2R3C (ENSTTRG00000007965) #17	KIAA0391 (ENSTTRG00000007967) #19	PSMA6 (ENSTTRG00000007968) #20	NFKBIA (ENSTTRG00000007970) #21	INSM2 (ENSTTRG00000007971) #22	RALGAPA1 (ENSTTRG00000007973) #23
Sperm whale	MODERN SPECIES	2	NPAS3 (ENSPCTG00005007723)	EGLN3 (ENSPCTG00005008171) #7	SPTSSA (ENSPCTG00005008208) #8	ENSPCTG00005008216	EAPP (ENSPCTG00005008229) #10	SNX6 (ENSPCTG00005008297) #11	CFL2 (ENSPCTG00005008413) #12	BAZ1A (ENSPCTG00005008484) #13	ENSPCTG00005008553 #14	SRP54 (ENSPCTG00005008651) #15	FAM177A1 (ENSPCTG00005008870) #16	PPP2R3C (ENSPCTG00005008942) #17	KIAA0391 (ENSPCTG00005009126) #19	PSMA6 (ENSPCTG00005009278) #20	NFKBIA (ENSPCTG00005009454) #21	INSM2 (ENSPCTG00005009574) #22	RALGAPA1 (ENSPCTG00005009631) #23	ENSPCTG00005010040	BRMS1L (ENSPCTG00005010126) #24	MBIP (ENSPCTG00005010176) #25	NKX2-1 (ENSPCTG00005010288) #26	NKX2-8 (ENSPCTG00005010355) #27	PAX9 (ENSPCTG00005010394) #28	SLC25A21 (ENSPCTG00005010485) #29	MIPOL1 (ENSPCTG00005010727)	FOXA1 (ENSPCTG00005010781)	TTC6 (ENSPCTG00005010855)	ENSPCTG00005011363	SSTR1 (ENSPCTG00005011397)	CLEC14A (ENSPCTG00005011415)	ENSPCTG00005011430
Blue whale	MODERN SPECIES	11	ENSBMSG00010013231 #10	ENSBMSG00010013245	ENSBMSG00010013286	ENSBMSG00010013306 #10	ENSBMSG00010013323	SNX6 (ENSBMSG00010013359) #11	ENSBMSG00010013382 #12	BAZ1A (ENSBMSG00010013408) #13	ENSBMSG00010000124 #14	SRP54 (ENSBMSG00010000198) #15	FAM177A1 (ENSBMSG00010000293) #16	PPP2R3C (ENSBMSG00010000349) #17	PRORP (ENSBMSG00010000430) #19	PSMA6 (ENSBMSG00010000487) #20	NFKBIA (ENSBMSG00010000520) #21	INSM2 (ENSBMSG00010000547) #22	ENSBMSG00010001500	BRMS1L (ENSBMSG00010001513) #24	ENSBMSG00010001533	ENSBMSG00010001544	MBIP (ENSBMSG00010001579) #25	NKX2-1 (ENSBMSG00010001638) #26	NKX2-8 (ENSBMSG00010001709) #27	PAX9 (ENSBMSG00010001732) #28	SLC25A21 (ENSBMSG00010001785) #29	MIPOL1 (ENSBMSG00010001858)	FOXA1 (ENSBMSG00010001887)	TTC6 (ENSBMSG00010001945)	SSTR1 (ENSBMSG00010002019)	SEC23A (ENSBMSG00010002081)	GEMIN2 (ENSBMSG00010002217)
Pecora	ANCESTRAL SPECIES	18	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00940000163541.g	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Percora_a	ANCESTRAL SPECIES	20	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00940000163541.g	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00940000163541.g	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Bovinae	ANCESTRAL SPECIES	19	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a.h #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Bos	ANCESTRAL SPECIES	18	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.gb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a.h #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921.f #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610.b #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.b.a.b.b.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00940000155989.o
Bos_b	ANCESTRAL SPECIES	18	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.gb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.a.b.a	ENSGT00390000016736.a.h #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921.f.b #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610.b #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.b.a.b.b.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00940000155989.o
Cow	MODERN SPECIES	13	EGLN3 (ENSBTAG00000008172) #7	SPTSSA (ENSBTAG00000013981) #8	EAPP (ENSBTAG00000003419) #10	SNX6 (ENSBTAG00000012873) #11	CFL2 (ENSBTAG00000015053) #12	BAZ1A (ENSBTAG00000020164) #13	ENSBTAG00000037938 #14	SRP54 (ENSBTAG00000019085) #15	ENSBTAG00000000425	FAM177A1 (ENSBTAG00000009680) #16	PPP2R3C (ENSBTAG00000009681) #17	PRORP (ENSBTAG00000009682) #19	ENSBTAG00000049349	PSMA6 (ENSBTAG00000009683) #20	NFKBIA (ENSBTAG00000016683) #21	INSM2 (ENSBTAG00000027013) #22	RALGAPA1 (ENSBTAG00000001282) #23	BRMS1L (ENSBTAG00000018400) #24	MBIP (ENSBTAG00000009941) #25	NKX2-1 (ENSBTAG00000000541) #26	NKX2-8 (ENSBTAG00000013352) #27	PAX9 (ENSBTAG00000009186) #28	SLC25A21 (ENSBTAG00000019350) #29	ENSBTAG00000054035	MIPOL1 (ENSBTAG00000000655)	FOXA1 (ENSBTAG00000013888)	TTC6 (ENSBTAG00000015095)	SSTR1 (ENSBTAG00000006582)	CLEC14A (ENSBTAG00000006130)	SEC23A (ENSBTAG00000003708)	ENSBTAG00000051859
Hybrid Bos Indicus	MODERN SPECIES	13	EGLN3 (ENSBIXG00005004670) #7	SPTSSA (ENSBIXG00005027156) #8	ENSBIXG00005027146	EAPP (ENSBIXG00005027140) #10	SNX6 (ENSBIXG00005027072) #11	CFL2 (ENSBIXG00005004635) #12	BAZ1A (ENSBIXG00005026976) #13	ENSBIXG00005004603 #14	SRP54 (ENSBIXG00005004590) #15	ENSBIXG00005004583	ENSBIXG00005026804 #16	PPP2R3C (ENSBIXG00005026776) #17	PRORP (ENSBIXG00005026751) #19	PSMA6 (ENSBIXG00005004554) #20	NFKBIA (ENSBIXG00005026599) #21	INSM2 (ENSBIXG00005026558) #22	RALGAPA1 (ENSBIXG00005026523) #23	ENSBIXG00005026403 #24	MBIP (ENSBIXG00005026348) #25	NKX2-1 (ENSBIXG00005026186) #26	NKX2-8 (ENSBIXG00005007637) #27	PAX9 (ENSBIXG00005006187) #28	SLC25A21 (ENSBIXG00005026075) #29	MIPOL1 (ENSBIXG00005025965)	ENSBIXG00005005896	FOXA1 (ENSBIXG00005007740)	TTC6 (ENSBIXG00005025812)	CLEC14A (ENSBIXG00005005777)	SEC23A (ENSBIXG00005025684)	GEMIN2 (ENSBIXG00005004365)	ENSBIXG00005025542
Bos_a	ANCESTRAL SPECIES	10	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940.fb.a #11	ENSGT00940000154940.gb #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a.h #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921.f #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610.b #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.b.a.b.b.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00940000155989.o
Domestic yak	MODERN SPECIES	8	EGLN3 (ENSBGRG00000009029) #7	SPTSSA (ENSBGRG00000009176) #8	EAPP (ENSBGRG00000009269) #10	CFL2 (ENSBGRG00000009349) #12	SNX6 (ENSBGRG00000009511) #11	ENSBGRG00000009716	BAZ1A (ENSBGRG00000009766) #13	ENSBGRG00000009920 #14	SRP54 (ENSBGRG00000009974) #15	FAM177A1 (ENSBGRG00000010282) #16	ENSBGRG00000010370	PPP2R3C (ENSBGRG00000010465) #17	PRORP (ENSBGRG00000010633) #19	PSMA6 (ENSBGRG00000011146) #20	ENSBGRG00000011907	INSM2 (ENSBGRG00000012041) #22	RALGAPA1 (ENSBGRG00000012142) #23	ENSBGRG00000013838	BRMS1L (ENSBGRG00000013859) #24	MBIP (ENSBGRG00000013911) #25	NKX2-1 (ENSBGRG00000003911) #26	ENSBGRG00000003958 #27	ENSBGRG00000003968 #27	PAX9 (ENSBGRG00000004012) #28	SLC25A21 (ENSBGRG00000004103) #29	MIPOL1 (ENSBGRG00000004331)	ENSBGRG00000004522	FOXA1 (ENSBGRG00000004531)	TTC6 (ENSBGRG00000004565)	SSTR1 (ENSBGRG00000004681)	CLEC14A (ENSBGRG00000004704)
American bison	MODERN SPECIES	2979				EGLN3 (ENSBBBG00000009629) #7	EAPP (ENSBBBG00000009619) #10	SNX6 (ENSBBBG00000009605) #11	CFL2 (ENSBBBG00000009594) #12	BAZ1A (ENSBBBG00000009578) #13	ENSBBBG00000007487 #14	SRP54 (ENSBBBG00000009551) #15	ENSBBBG00000009538 #16	PPP2R3C (ENSBBBG00000009534) #17	PRORP (ENSBBBG00000009525) #19	PSMA6 (ENSBBBG00000009515) #20	NFKBIA (ENSBBBG00000009508) #21	INSM2 (ENSBBBG00000001523) #22	RALGAPA1 (ENSBBBG00000009495) #23	BRMS1L (ENSBBBG00000001516) #24	MBIP (ENSBBBG00000009469) #25	PAX9 (ENSBBBG00000009458) #28	SLC25A21 (ENSBBBG00000009455) #29	MIPOL1 (ENSBBBG00000009451)	ENSBBBG00000009448	FOXA1 (ENSBBBG00000009446)	ENSBBBG00000001510	SSTR1 (ENSBBBG00000025468)	CLEC14A (ENSBBBG00000025441)	SEC23A (ENSBBBG00000025418)	GEMIN2 (ENSBBBG00000006690)	TRAPPC6B (ENSBBBG00000006667)	PNN (ENSBBBG00000025117)
Caprinae	ANCESTRAL SPECIES	22	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00940000163541.g	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Goat	MODERN SPECIES	13	EGLN3 (ENSCHIG00000016948) #7	ENSCHIG00000021678	ENSCHIG00000008804 #8	ENSCHIG00000016213	EAPP (ENSCHIG00000022171) #10	ENSCHIG00000017907 #11	CFL2 (ENSCHIG00000015758) #12	BAZ1A (ENSCHIG00000019365) #13	ENSCHIG00000023755 #14	SRP54 (ENSCHIG00000026345) #15	FAM177A1 (ENSCHIG00000026400) #16	PPP2R3C (ENSCHIG00000015062) #17	PRORP (ENSCHIG00000026248) #19	PSMA6 (ENSCHIG00000020801) #20	NFKBIA (ENSCHIG00000010157) #21	INSM2 (ENSCHIG00000019716) #22	RALGAPA1 (ENSCHIG00000021528) #23	BRMS1L (ENSCHIG00000016496) #24	ENSCHIG00000011615	ENSCHIG00000008222	MBIP (ENSCHIG00000020536) #25	NKX2-1 (ENSCHIG00000023893) #26	NKX2-8 (ENSCHIG00000020833) #27	ENSCHIG00000015528	PAX9 (ENSCHIG00000017353) #28	SLC25A21 (ENSCHIG00000017403) #29	MIPOL1 (ENSCHIG00000011846)	FOXA1 (ENSCHIG00000023519)	ENSCHIG00000013240	SSTR1 (ENSCHIG00000006157)	CLEC14A (ENSCHIG00000008637)
Rambouillet Sheep	MODERN SPECIES	9	AKAP6 (ENSOARG00020005604)	NPAS3 (ENSOARG00020005668)	EGLN3 (ENSOARG00020005770) #7	ENSOARG00020005825 #8	ENSOARG00020005839 #10	SNX6 (ENSOARG00020005948) #11	CFL2 (ENSOARG00020006245) #12	BAZ1A (ENSOARG00020006340) #13	ENSOARG00020006421 #14	SRP54 (ENSOARG00020006524) #15	FAM177A1 (ENSOARG00020006769) #16	PPP2R3C (ENSOARG00020006825) #17	PSMA6 (ENSOARG00020006992) #19	NFKBIA (ENSOARG00020007336) #21	ENSOARG00020007449 #10	INSM2 (ENSOARG00020007546) #22	RALGAPA1 (ENSOARG00020007640) #23	BRMS1L (ENSOARG00020009991) #24	ENSOARG00020010080	MBIP (ENSOARG00020010152) #25	NKX2-1 (ENSOARG00020010481) #26	NKX2-8 (ENSOARG00020010624) #27	PAX9 (ENSOARG00020010673) #28	SLC25A21 (ENSOARG00020010778) #29	MIPOL1 (ENSOARG00020011197)	FOXA1 (ENSOARG00020011508)	ENSOARG00020011571	ENSOARG00020011587	SSTR1 (ENSOARG00020011703)	CLEC14A (ENSOARG00020011752)	SEC23A (ENSOARG00020011878)
Siberian musk deer	MODERN SPECIES	392	ENSMMSG00000016824	SPTSSA (ENSMMSG00000016814) #8	ENSMMSG00000016793 #10	SNX6 (ENSMMSG00000016683) #11	ENSMMSG00000016650	CFL2 (ENSMMSG00000016590) #12	BAZ1A (ENSMMSG00000016300) #13	ENSMMSG00000016259 #14	SRP54 (ENSMMSG00000016134) #15	ENSMMSG00000016102	FAM177A1 (ENSMMSG00000016070) #16	PPP2R3C (ENSMMSG00000015971) #17	PRORP (ENSMMSG00000015820) #19	PSMA6 (ENSMMSG00000016417) #20	ENSMMSG00000016348 #21	INSM2 (ENSMMSG00000016329) #22	RALGAPA1 (ENSMMSG00000016068) #23	BRMS1L (ENSMMSG00000015961) #24	MBIP (ENSMMSG00000015887) #25	NKX2-1 (ENSMMSG00000015867) #26	NKX2-8 (ENSMMSG00000015844) #27	PAX9 (ENSMMSG00000015813) #28	SLC25A21 (ENSMMSG00000015698) #29	MIPOL1 (ENSMMSG00000015646)	FOXA1 (ENSMMSG00000015629)	TTC6 (ENSMMSG00000015362)
Yarkand deer	MODERN SPECIES	4	EGLN3 (ENSCHYG00000006118) #7	ENSCHYG00000006192	SPTSSA (ENSCHYG00000006204) #8	ENSCHYG00000006229	EAPP (ENSCHYG00000006243) #10	ENSCHYG00000006328 #11	ENSCHYG00000006486	CFL2 (ENSCHYG00000006518) #12	BAZ1A (ENSCHYG00000006594) #13	ENSCHYG00000006663 #14	SRP54 (ENSCHYG00000006731) #15	FAM177A1 (ENSCHYG00000006869) #16	PPP2R3C (ENSCHYG00000006920) #17	PRORP (ENSCHYG00000007053) #19	ENSCHYG00000007413	INSM2 (ENSCHYG00000007476) #22	RALGAPA1 (ENSCHYG00000007571) #23	BRMS1L (ENSCHYG00000008475) #24	MBIP (ENSCHYG00000008530) #25	NKX2-1 (ENSCHYG00000008971) #26	NKX2-8 (ENSCHYG00000009069) #27	PAX9 (ENSCHYG00000009089) #28	SLC25A21 (ENSCHYG00000009153) #29	MIPOL1 (ENSCHYG00000009519)	FOXA1 (ENSCHYG00000009703)	TTC6 (ENSCHYG00000009785)	SSTR1 (ENSCHYG00000010165)	CLEC14A (ENSCHYG00000010179)	SEC23A (ENSCHYG00000010221)	ENSCHYG00000010402	ENSCHYG00000010430
Camelidae	ANCESTRAL SPECIES	41	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00940000167277	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Arabian camel	MODERN SPECIES	32	AKAP6 (ENSCDRG00005015475)	ENSCDRG00005015572	EGLN3 (ENSCDRG00005015624) #7	ENSCDRG00005015685	EAPP (ENSCDRG00005015710) #10	SNX6 (ENSCDRG00005015791) #11	CFL2 (ENSCDRG00005016024) #12	BAZ1A (ENSCDRG00005016142) #13	ENSCDRG00005016608 #14	SRP54 (ENSCDRG00005016645) #15	FAM177A1 (ENSCDRG00005016804) #16	PPP2R3C (ENSCDRG00005016852) #17	PRORP (ENSCDRG00005016960) #19	PSMA6 (ENSCDRG00005017112) #20	NFKBIA (ENSCDRG00005017198) #21	INSM2 (ENSCDRG00005017254) #22	RALGAPA1 (ENSCDRG00005017292) #23	BRMS1L (ENSCDRG00005017695) #24	MBIP (ENSCDRG00005017739) #25	NKX2-1 (ENSCDRG00005017830) #26	NKX2-8 (ENSCDRG00005017891) #27	PAX9 (ENSCDRG00005017915) #28	SLC25A21 (ENSCDRG00005017967) #29	MIPOL1 (ENSCDRG00005018105)	FOXA1 (ENSCDRG00005018167)	ENSCDRG00005018189	ENSCDRG00005018225	SSTR1 (ENSCDRG00005018396)	SEC23A (ENSCDRG00005018425)	GEMIN2 (ENSCDRG00005018530)	TRAPPC6B (ENSCDRG00005018629)
Alpaca	MODERN SPECIES	3218															ENSVPAG00000010437	INSM2 (ENSVPAG00000010440) #22	RALGAPA1 (ENSVPAG00000010441) #23	BRMS1L (ENSVPAG00000010442) #24	MBIP (ENSVPAG00000010443) #25
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Carnivora	ANCESTRAL SPECIES		ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d	ENSGT00390000013814
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Ursidae	ANCESTRAL SPECIES	10	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Ursus	ANCESTRAL SPECIES	98						ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160	ENSGT00950000182767.b.b.d	ENSGT00390000017718.b
American black bear	MODERN SPECIES	6250																INSM2 (ENSUAMG00000006503) #22	ENSUAMG00000006500 #23
Giant Panda	MODERN SPECIES	12	AKAP6 (ENSAMEG00000015685)	NPAS3 (ENSAMEG00000029238)	EGLN3 (ENSAMEG00000023682) #7	SPTSSA (ENSAMEG00000028071) #8	EAPP (ENSAMEG00000006454) #10	SNX6 (ENSAMEG00000015476) #11	CFL2 (ENSAMEG00000015508) #12	BAZ1A (ENSAMEG00000015512) #13	ENSAMEG00000015534 #14	SRP54 (ENSAMEG00000015544) #15	FAM177A1 (ENSAMEG00000015581) #16	PPP2R3C (ENSAMEG00000015586) #17	PRORP (ENSAMEG00000015610) #19	PSMA6 (ENSAMEG00000015614) #20	NFKBIA (ENSAMEG00000015629) #21	INSM2 (ENSAMEG00000019215) #22	RALGAPA1 (ENSAMEG00000015649) #23	BRMS1L (ENSAMEG00000015738) #24	MBIP (ENSAMEG00000013537) #25	NKX2-1 (ENSAMEG00000031459) #26	NKX2-8 (ENSAMEG00000025998) #27	PAX9 (ENSAMEG00000002906) #28	SLC25A21 (ENSAMEG00000002915) #29	MIPOL1 (ENSAMEG00000025357)	FOXA1 (ENSAMEG00000024574)	ENSAMEG00000007991	SSTR1 (ENSAMEG00000018831)	CLEC14A (ENSAMEG00000007985)	ENSAMEG00000027344	SEC23A (ENSAMEG00000003803)	GEMIN2 (ENSAMEG00000003856)
Mustelinae	ANCESTRAL SPECIES	32	ENSGT00940000166226	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Ferret	MODERN SPECIES	341					SNX6 (ENSMPUG00000016307) #11	CFL2 (ENSMPUG00000016306) #12	BAZ1A (ENSMPUG00000016305) #13	ENSMPUG00000016304 #14	SRP54 (ENSMPUG00000016302) #15	FAM177A1 (ENSMPUG00000016294) #16	PPP2R3C (ENSMPUG00000016292) #17	PRORP (ENSMPUG00000016290) #19	PSMA6 (ENSMPUG00000016288) #20	NFKBIA (ENSMPUG00000016286) #21	ENSMPUG00000016285	INSM2 (ENSMPUG00000019565) #22	RALGAPA1 (ENSMPUG00000016268) #23	BRMS1L (ENSMPUG00000016267) #24	ENSMPUG00000019563	MBIP (ENSMPUG00000016265) #25	NKX2-1 (ENSMPUG00000016263) #26	NKX2-8 (ENSMPUG00000016261) #27	PAX9 (ENSMPUG00000016259) #28	SLC25A21 (ENSMPUG00000016258) #29	ENSMPUG00000016257	MIPOL1 (ENSMPUG00000016256)	FOXA1 (ENSMPUG00000016255)	ENSMPUG00000016251	SSTR1 (ENSMPUG00000019561)	CLEC14A (ENSMPUG00000019559)	ENSMPUG00000016249
American mink	MODERN SPECIES	84	EGLN3 (ENSNVIG00000002975) #7	ENSNVIG00000002935	SPTSSA (ENSNVIG00000002933) #8	EAPP (ENSNVIG00000002902) #10	SNX6 (ENSNVIG00000002824) #11	CFL2 (ENSNVIG00000002744) #12	BAZ1A (ENSNVIG00000002565) #13	ENSNVIG00000002515 #14	SRP54 (ENSNVIG00000002461) #15	ENSNVIG00000002439	FAM177A1 (ENSNVIG00000002414) #16	PPP2R3C (ENSNVIG00000002372) #17	PRORP (ENSNVIG00000002327) #19	PSMA6 (ENSNVIG00000002214) #20	NFKBIA (ENSNVIG00000002189) #21	INSM2 (ENSNVIG00000002180) #22	RALGAPA1 (ENSNVIG00000001947) #23
Canidae	ANCESTRAL SPECIES	4	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.w #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.j #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000012818.o.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00910000147746	ENSGT00390000006916.d
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332.w #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d.i.a.b #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000012818.o.b	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Dog	MODERN SPECIES	36	EGLN3 (ENSCAFG00845012583) #7	ENSCAFG00845001464	ENSCAFG00845001492 #8	EAPP (ENSCAFG00845001503) #10	ENSCAFG00845001517 #11	ENSCAFG00845001579 #11	CFL2 (ENSCAFG00845001611) #12	BAZ1A (ENSCAFG00845001639) #13	ENSCAFG00845001684 #14	SRP54 (ENSCAFG00845001751) #15	FAM177A1 (ENSCAFG00845001803) #16	PPP2R3C (ENSCAFG00845001831) #17	PSMA6 (ENSCAFG00845001872) #19	PSMA6 (ENSCAFG00845001929) #20	NFKBIA (ENSCAFG00845002047) #21	INSM2 (ENSCAFG00845002072) #22	RALGAPA1 (ENSCAFG00845002236) #23	BRMS1L (ENSCAFG00845002506) #24	MBIP (ENSCAFG00845002536) #25	ENSCAFG00845002614	NKX2-1 (ENSCAFG00845002630) #26	NKX2-8 (ENSCAFG00845002657) #27	PAX9 (ENSCAFG00845002669) #28	SLC25A21 (ENSCAFG00845002697) #29	ENSCAFG00845002744	MIPOL1 (ENSCAFG00845002871)	FOXA1 (ENSCAFG00845002956)	TTC6 (ENSCAFG00845003002)	ENSCAFG00845003148	SSTR1 (ENSCAFG00845003155)	ENSCAFG00845003193
Dingo	MODERN SPECIES	161	NPAS3 (ENSCAFG00020023578)	EGLN3 (ENSCAFG00020023576) #7	SPTSSA (ENSCAFG00020023575) #8	EAPP (ENSCAFG00020023572) #10	ENSCAFG00020023570 #11	ENSCAFG00020023557 #11	CFL2 (ENSCAFG00020023554) #12	BAZ1A (ENSCAFG00020023452) #13	ENSCAFG00020023434 #14	SRP54 (ENSCAFG00020023427) #15	FAM177A1 (ENSCAFG00020023422) #16	PPP2R3C (ENSCAFG00020023418) #17	PRORP (ENSCAFG00020023411) #19	ENSCAFG00020023389 #20	ENSCAFG00020023383	INSM2 (ENSCAFG00020023381) #22	RALGAPA1 (ENSCAFG00020022394) #23	BRMS1L (ENSCAFG00020022326) #24	MBIP (ENSCAFG00020022316) #25	NKX2-1 (ENSCAFG00020022305) #26	NKX2-8 (ENSCAFG00020022302) #27	PAX9 (ENSCAFG00020022298) #28	SLC25A21 (ENSCAFG00020022293) #29	ENSCAFG00020022291	MIPOL1 (ENSCAFG00020022283)	FOXA1 (ENSCAFG00020022280)	ENSCAFG00020022278	ENSCAFG00020022259	SSTR1 (ENSCAFG00020022254)	CLEC14A (ENSCAFG00020022251)	ENSCAFG00020022245
Red fox	MODERN SPECIES	160						ENSVVUG00000019330 #11	CFL2 (ENSVVUG00000019333) #12	BAZ1A (ENSVVUG00000019376) #13	ENSVVUG00000019944 #14	SRP54 (ENSVVUG00000019962) #15	FAM177A1 (ENSVVUG00000019978) #16	PPP2R3C (ENSVVUG00000019984) #17	KIAA0391 (ENSVVUG00000019995) #19	ENSVVUG00000020002 #20	NFKBIA (ENSVVUG00000020008)	INSM2 (ENSVVUG00000020010) #22	ENSVVUG00000020020 #23	BRMS1L (ENSVVUG00000020391) #24	ENSVVUG00000020644	MBIP (ENSVVUG00000020649) #25	NKX2-1 (ENSVVUG00000020663) #26	NKX2-8 (ENSVVUG00000020667) #27	PAX9 (ENSVVUG00000020678) #28	SLC25A21 (ENSVVUG00000020692) #29	ENSVVUG00000020702	ENSVVUG00000020704	MIPOL1 (ENSVVUG00000020708)	FOXA1 (ENSVVUG00000020715)	TTC6 (ENSVVUG00000020723)	ENSVVUG00000020937	SSTR1 (ENSVVUG00000020940)
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000165456	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000165456	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000165456	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d
lion	MODERN SPECIES	6	SPTSSA (ENSPLOG00000001474) #8	EAPP (ENSPLOG00000001486) #10	ENSPLOG00000001525 #11	ENSPLOG00000001550 #12	BAZ1A (ENSPLOG00000001606) #13	ENSPLOG00000001640 #14	SRP54 (ENSPLOG00000001676) #15	FAM177A1 (ENSPLOG00000001730) #16	PPP2R3C (ENSPLOG00000001758) #17	PRORP (ENSPLOG00000001810) #19	PSMA6 (ENSPLOG00000001875) #20	NFKBIA (ENSPLOG00000001934) #21	ENSPLOG00000001956	ENSPLOG00000001964	ENSPLOG00000001985	INSM2 (ENSPLOG00000002008) #22	RALGAPA1 (ENSPLOG00000002123) #23	BRMS1L (ENSPLOG00000002208) #24	MBIP (ENSPLOG00000002239) #25	ENSPLOG00000002268	NKX2-1 (ENSPLOG00000002307) #26	NKX2-8 (ENSPLOG00000002457) #27	PAX9 (ENSPLOG00000002480) #28	SLC25A21 (ENSPLOG00000002536) #29	MIPOL1 (ENSPLOG00000002633)	ENSPLOG00000002683	FOXA1 (ENSPLOG00000002698)	ENSPLOG00000002715	ENSPLOG00000002768	SSTR1 (ENSPLOG00000002837)	CLEC14A (ENSPLOG00000002851)
leopard	MODERN SPECIES	104					SNX6 (ENSPPRG00000007217) #11	ENSPPRG00000007702 #12	BAZ1A (ENSPPRG00000009072) #13	ENSPPRG00000010009	ENSPPRG00000010130 #14	SRP54 (ENSPPRG00000014047) #15	FAM177A1 (ENSPPRG00000014546) #16	PPP2R3C (ENSPPRG00000016382) #17	PRORP (ENSPPRG00000019936) #19	PSMA6 (ENSPPRG00000021426) #20	NFKBIA (ENSPPRG00000022600) #21	INSM2 (ENSPPRG00000018323) #22	RALGAPA1 (ENSPPRG00000005277) #23	BRMS1L (ENSPPRG00000005569) #24	MBIP (ENSPPRG00000006032) #25	NKX2-1 (ENSPPRG00000006122) #26	NKX2-8 (ENSPPRG00000006268) #27	PAX9 (ENSPPRG00000006528) #28	SLC25A21 (ENSPPRG00000006887) #29	ENSPPRG00000018447	MIPOL1 (ENSPPRG00000007574)	FOXA1 (ENSPPRG00000007719)	ENSPPRG00000008205	SSTR1 (ENSPPRG00000018501)	CLEC14A (ENSPPRG00000018529)	SEC23A (ENSPPRG00000009140)	GEMIN2 (ENSPPRG00000009485)
Cat	MODERN SPECIES	237	ENSFCAG00000023772	SPTSSA (ENSFCAG00000042893) #8	EAPP (ENSFCAG00000030251) #10	SNX6 (ENSFCAG00000018851) #11	CFL2 (ENSFCAG00000008480) #12	BAZ1A (ENSFCAG00000024924) #13	ENSFCAG00000029463 #14	SRP54 (ENSFCAG00000032033) #15	FAM177A1 (ENSFCAG00000043712) #16	PPP2R3C (ENSFCAG00000030690) #17	PRORP (ENSFCAG00000004383) #19	PSMA6 (ENSFCAG00000026276) #20	NFKBIA (ENSFCAG00000006671) #21	ENSFCAG00000050300	ENSFCAG00000035826	INSM2 (ENSFCAG00000025118) #22	RALGAPA1 (ENSFCAG00000012361) #23	BRMS1L (ENSFCAG00000024948) #24	MBIP (ENSFCAG00000037504) #25	ENSFCAG00000027871	NKX2-1 (ENSFCAG00000038026) #26	NKX2-8 (ENSFCAG00000001021) #27	PAX9 (ENSFCAG00000001024) #28	SLC25A21 (ENSFCAG00000001025) #29	MIPOL1 (ENSFCAG00000024743)	FOXA1 (ENSFCAG00000028305)	TTC6 (ENSFCAG00000004443)	SSTR1 (ENSFCAG00000009489)	CLEC14A (ENSFCAG00000003693)	SEC23A (ENSFCAG00000018907)	GEMIN2 (ENSFCAG00000029921)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Equus	ANCESTRAL SPECIES	54	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT01100000265618	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Donkey	MODERN SPECIES	11	EGLN3 (ENSEASG00005028459) #7	SPTSSA (ENSEASG00005026736) #8	EAPP (ENSEASG00005026397) #10	ENSEASG00005009746 #11	ENSEASG00005034847 #11	CFL2 (ENSEASG00005001781) #12	ENSEASG00005001804 #13	ENSEASG00005002050	ENSEASG00005002053 #14	SRP54 (ENSEASG00005002057) #15	FAM177A1 (ENSEASG00005002060) #16	PPP2R3C (ENSEASG00005002062) #17	PRORP (ENSEASG00005002065) #19	PSMA6 (ENSEASG00005002068) #20	NFKBIA (ENSEASG00005002070) #21	INSM2 (ENSEASG00005002073) #22	RALGAPA1 (ENSEASG00005002495) #23	BRMS1L (ENSEASG00005007558) #24	MBIP (ENSEASG00005007561) #25	NKX2-1 (ENSEASG00005026940) #26	NKX2-8 (ENSEASG00005029529) #27	PAX9 (ENSEASG00005007564) #28	SLC25A21 (ENSEASG00005007565) #29	MIPOL1 (ENSEASG00005007607)	FOXA1 (ENSEASG00005007608)	TTC6 (ENSEASG00005007610)	SSTR1 (ENSEASG00005029148)	CLEC14A (ENSEASG00005027375)	SEC23A (ENSEASG00005007615)	GEMIN2 (ENSEASG00005007617)	TRAPPC6B (ENSEASG00005034601)
Horse	MODERN SPECIES		NPAS3 (ENSECAG00000021888)	EGLN3 (ENSECAG00000005086) #7	SPTSSA (ENSECAG00000034886) #8	EAPP (ENSECAG00000009667) #10	SNX6 (ENSECAG00000012176) #11	CFL2 (ENSECAG00000000511) #12	BAZ1A (ENSECAG00000007751) #13	ENSECAG00000054257	ENSECAG00000015906 #14	SRP54 (ENSECAG00000018042) #15	FAM177A1 (ENSECAG00000012435) #16	PPP2R3C (ENSECAG00000015352) #17	PRORP (ENSECAG00000019221) #19	PSMA6 (ENSECAG00000022437) #20	NFKBIA (ENSECAG00000023420) #21	INSM2 (ENSECAG00000034097) #22	RALGAPA1 (ENSECAG00000024960) #23	BRMS1L (ENSECAG00000013452) #24	MBIP (ENSECAG00000022491) #25	NKX2-1 (ENSECAG00000032995) #26	NKX2-8 (ENSECAG00000023678) #27	PAX9 (ENSECAG00000023712) #28	SLC25A21 (ENSECAG00000002597) #29	MIPOL1 (ENSECAG00000026892)	ENSECAG00000045638	FOXA1 (ENSECAG00000027995)	TTC6 (ENSECAG00000010115)	CLEC14A (ENSECAG00000004803)	SSTR1 (ENSECAG00000004716)	SEC23A (ENSECAG00000014310)	GEMIN2 (ENSECAG00000007554)
Chiroptera	ANCESTRAL SPECIES	34	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000166771	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814
Greater horseshoe bat	MODERN SPECIES	24	EGLN3 (ENSRFEG00010002399) #7	SPTSSA (ENSRFEG00010002421) #8	EAPP (ENSRFEG00010002434) #10	SNX6 (ENSRFEG00010002499) #11	ENSRFEG00010002540	CFL2 (ENSRFEG00010002557) #12	BAZ1A (ENSRFEG00010002589) #13	ENSRFEG00010002630 #14	SRP54 (ENSRFEG00010002671) #15	FAM177A1 (ENSRFEG00010002737) #16	PPP2R3C (ENSRFEG00010002782) #17	PRORP (ENSRFEG00010002863) #19	ENSRFEG00010002929 #20	NFKBIA (ENSRFEG00010002978) #21	ENSRFEG00010002998	INSM2 (ENSRFEG00010003015) #22	RALGAPA1 (ENSRFEG00010003084) #23	BRMS1L (ENSRFEG00010003180) #24	MBIP (ENSRFEG00010003230) #25	NKX2-1 (ENSRFEG00010003300) #26	NKX2-8 (ENSRFEG00010003314) #27	PAX9 (ENSRFEG00010003330) #28	SLC25A21 (ENSRFEG00010003365) #29	MIPOL1 (ENSRFEG00010003421)	FOXA1 (ENSRFEG00010003493)	ENSRFEG00010003507	ENSRFEG00010003538	ENSRFEG00010003598	SSTR1 (ENSRFEG00010003612)	CLEC14A (ENSRFEG00010003621)	SEC23A (ENSRFEG00010003653)
Microbat	MODERN SPECIES	959	AKAP6 (ENSMLUG00000007138)	NPAS3 (ENSMLUG00000016973)	EGLN3 (ENSMLUG00000014716) #7	SPTSSA (ENSMLUG00000013821) #8	EAPP (ENSMLUG00000013814) #10	ENSMLUG00000030716	SNX6 (ENSMLUG00000007049) #11	BAZ1A (ENSMLUG00000006672) #13	ENSMLUG00000023750 #14	SRP54 (ENSMLUG00000008958) #15	FAM177A1 (ENSMLUG00000010187) #16	PPP2R3C (ENSMLUG00000024559) #17	PRORP (ENSMLUG00000010205) #19	PSMA6 (ENSMLUG00000010228) #20	ENSMLUG00000004519	INSM2 (ENSMLUG00000026985) #22	ENSMLUG00000023852	RALGAPA1 (ENSMLUG00000007979) #23	BRMS1L (ENSMLUG00000008089) #24	ENSMLUG00000004184	ENSMLUG00000025502	MBIP (ENSMLUG00000011617) #25	NKX2-1 (ENSMLUG00000011377) #26	NKX2-8 (ENSMLUG00000011403) #27	PAX9 (ENSMLUG00000011407) #28	SLC25A21 (ENSMLUG00000011418) #29	ENSMLUG00000013345	FOXA1 (ENSMLUG00000029779)	ENSMLUG00000002757	SSTR1 (ENSMLUG00000003045)	CLEC14A (ENSMLUG00000003049)
Megabat	MODERN SPECIES	2094																INSM2 (ENSPVAG00000003511) #22	RALGAPA1 (ENSPVAG00000003512) #23	BRMS1L (ENSPVAG00000003523) #24
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745 #7	ENSGT00390000002766.b.b #8	ENSGT00390000001332 #10	ENSGT00940000154940 #11	ENSGT00950000183000.c.b #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000162733 #21	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00930000151088	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160
Elephant	MODERN SPECIES	602	AKAP6 (ENSLAFG00000000717)	NPAS3 (ENSLAFG00000007169)	EGLN3 (ENSLAFG00000007342) #7	SPTSSA (ENSLAFG00000030948) #8	EAPP (ENSLAFG00000010570) #10	SNX6 (ENSLAFG00000010573) #11	CFL2 (ENSLAFG00000010579) #12	BAZ1A (ENSLAFG00000010581) #13	ENSLAFG00000025618 #14	SRP54 (ENSLAFG00000012007) #15	FAM177A1 (ENSLAFG00000022331) #16	ENSLAFG00000009868 #17	PRORP (ENSLAFG00000009871) #19	PSMA6 (ENSLAFG00000017359) #20	NFKBIA (ENSLAFG00000018611) #21	INSM2 (ENSLAFG00000008242) #22	RALGAPA1 (ENSLAFG00000008245) #23	BRMS1L (ENSLAFG00000017810) #24	MBIP (ENSLAFG00000013070) #25	NKX2-1 (ENSLAFG00000028846) #26	NKX2-8 (ENSLAFG00000017532) #27	PAX9 (ENSLAFG00000017541) #28	SLC25A21 (ENSLAFG00000017545) #29	ENSLAFG00000011548	FOXA1 (ENSLAFG00000000062)	ENSLAFG00000000352	SSTR1 (ENSLAFG00000015113)	CLEC14A (ENSLAFG00000015731)	SEC23A (ENSLAFG00000010896)	GEMIN2 (ENSLAFG00000010321)	TRAPPC6B (ENSLAFG00000030129)
Hyrax	MODERN SPECIES	5184																INSM2 (ENSPCAG00000004250) #22	RALGAPA1 (ENSPCAG00000004259) #23
Tenrec	MODERN SPECIES	6150																INSM2 (ENSETEG00000019088) #22	RALGAPA1 (ENSETEG00000019090) #23	BRMS1L (ENSETEG00000019095) #24
Xenarthra	ANCESTRAL SPECIES	1812																ENSGT00940000162391 #22	ENSGT00950000183139.B #23
Armadillo	MODERN SPECIES	629																INSM2 (ENSDNOG00000007824) #22	RALGAPA1 (ENSDNOG00000007827) #23	ENSDNOG00000040178	BRMS1L (ENSDNOG00000049614) #24	ENSDNOG00000048938
Marsupialia	ANCESTRAL SPECIES		ENSGT01020000230346.A	ENSGT00940000154859	ENSGT00390000008666	ENSGT00390000013444.a.a	ENSGT00940000156065	ENSGT00940000159502	ENSGT00950000183000.c.b.n #12	ENSGT00940000158135 #13	ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160
Opossum	MODERN SPECIES		BMP4 (ENSMODG00000012951)	ENSMODG00000025310	ENSMODG00000049664	ENSMODG00000038654	ENSMODG00000044246	ENSMODG00000012949 #12	BAZ1A (ENSMODG00000012946) #13	ENSMODG00000023905	ENSMODG00000012929 #14	ENSMODG00000012925 #15	FAM177A1 (ENSMODG00000012826) #16	PPP2R3C (ENSMODG00000012905) #17	ENSMODG00000012822 #19	PSMA6 (ENSMODG00000012807) #20	ENSMODG00000012801	INSM2 (ENSMODG00000012791) #22	RALGAPA1 (ENSMODG00000012779) #23	BRMS1L (ENSMODG00000012750) #24	ENSMODG00000038232	ENSMODG00000012714	MBIP (ENSMODG00000012698) #25	NKX2-1 (ENSMODG00000012691) #26	NKX2-8 (ENSMODG00000012683) #27	ENSMODG00000043940	PAX9 (ENSMODG00000012681) #28	SLC25A21 (ENSMODG00000012677) #29	ENSMODG00000027536	LECT2 (ENSMODG00000015175)	TGFBI (ENSMODG00000015162)	SMAD5 (ENSMODG00000015152)	SMIM32 (ENSMODG00000042955)
Marsupialia_b	ANCESTRAL SPECIES	21									ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000009147	ENSSHAG00000020911	ENSSHAG00000003492	ENSSHAG00000005877	NID2 (ENSSHAG00000006301)	PTGDR (ENSSHAG00000001165)	TXNDC16 (ENSSHAG00000001610)	PSMC6 (ENSSHAG00000006344)	STYX (ENSSHAG00000028094)	GNPNAT1 (ENSSHAG00000030949)	FERMT2 (ENSSHAG00000030216)	DDHD1 (ENSSHAG00000005218)	ENSSHAG00000026411	ENSSHAG00000027001 #12	ENSSHAG00000002729 #13	ENSSHAG00000008600 #22	ENSSHAG00000008630 #23	BRMS1L (ENSSHAG00000029315) #24	MBIP (ENSSHAG00000006161) #25	ENSSHAG00000009469 #26	ENSSHAG00000006053	ENSSHAG00000030666	ENSSHAG00000001780	ENSSHAG00000000807	ENSSHAG00000026495	TMEM121 (ENSSHAG00000020874)	ENSSHAG00000005211	ENSSHAG00000005558	ENSSHAG00000006262	ENSSHAG00000002300	ENSSHAG00000022305
Diprotodontia	ANCESTRAL SPECIES	34									ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160
Diprotodontia_a	ANCESTRAL SPECIES	33									ENSGT00390000012799 #14	ENSGT00550000074824 #15	ENSGT00390000016736.a #16	ENSGT00940000155583 #17	ENSGT00390000002201 #19	ENSGT00550000074807.d #20	ENSGT00940000163080	ENSGT00940000162391 #22	ENSGT00950000183139.B #23	ENSGT00940000158921 #24	ENSGT00510000047831 #25	ENSGT00940000161107 #26	ENSGT00940000161610 #27	ENSGT00940000159896 #28	ENSGT00730000111119 #29	ENSGT00390000017800	ENSGT00940000162043	ENSGT00940000161150	ENSGT00940000161442	ENSGT00390000006916.d	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160
koala	MODERN SPECIES	41									ENSPCIG00000016177 #14	SRP54 (ENSPCIG00000016175) #15	FAM177A1 (ENSPCIG00000016173) #16	ENSPCIG00000016172	PPP2R3C (ENSPCIG00000016170) #17	PRORP (ENSPCIG00000016169) #19	ENSPCIG00000016166	INSM2 (ENSPCIG00000017418) #22	RALGAPA1 (ENSPCIG00000006590) #23	ENSPCIG00000036746	BRMS1L (ENSPCIG00000037373) #24	MBIP (ENSPCIG00000025612) #25	NKX2-1 (ENSPCIG00000014580) #26	NKX2-8 (ENSPCIG00000009271) #27	PAX9 (ENSPCIG00000015489) #28	SLC25A21 (ENSPCIG00000015479) #29	ENSPCIG00000009209	MIPOL1 (ENSPCIG00000015450)	FOXA1 (ENSPCIG00000015466)	ENSPCIG00000001434	SSTR1 (ENSPCIG00000019519)	ENSPCIG00000023334	ENSPCIG00000025760