Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155769 #11	ENSGT00640000091492.b #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00940000155271	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470.s ##19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921 #23	ENSGT00940000154543.a	ENSGT00940000158073 #24	ENSGT00390000011620.a.a.b	ENSGT00940000156010 #25	ENSGT00940000159695 #26	ENSGT00940000159853 #27	ENSGT00940000157379 #28	ENSGT00940000161502 #29	ENSGT00940000158762 #30	ENSGT00390000013839 #31	ENSGT00940000156537	ENSGT00390000017515.o.b.j #32
Naked mole-rat female	MODERN SPECIES	6	PCK1 (ENSHGLG00000018888) #7	C20orf85 (ENSHGLG00000019072) #8	ENSHGLG00000013351 #9	RAB22A (ENSHGLG00000009337) #10	VAPB (ENSHGLG00000049133) #11	APCDD1L (ENSHGLG00000044632) #12	STX16 (ENSHGLG00000005872) #13	ENSHGLG00000005914 #14	ENSHGLG00000005981 #15	ENSHGLG00000007894 #16	CTSZ (ENSHGLG00000050387) #17	TUBB1 (ENSHGLG00000007606) #18	ENSHGLG00000008231 #19	ENSHGLG00000009253 #20	ZNF831 (ENSHGLG00000010468) #21	EDN3 (ENSHGLG00000018677) #22	PPP1R3D (ENSHGLG00000033683) #23	ENSHGLG00000038944 #24	LSM14B (ENSHGLG00000015055) #25	ENSHGLG00000013634 #26	SS18L1 (ENSHGLG00000006752) #27	ENSHGLG00000049601 #28	ENSHGLG00000046738 #29	OSBPL2 (ENSHGLG00000015027) #30	ADRM1 (ENSHGLG00000005649) #31	RPS21 (ENSHGLG00000040061) #32	ENSHGLG00000044047 #33	ENSHGLG00000040253 #34	ENSHGLG00000006232 #35	NTSR1 (ENSHGLG00000037154) #36	MRGBP (ENSHGLG00000042672) #37
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00950000183066.a.b.a.b #9	ENSGT00940000157009 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470.s ##19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00390000015137	ENSGT00950000183066.a.b.a.b #9	ENSGT00940000157009 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470.s ##19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22
Long-tailed chinchilla	MODERN SPECIES	152	ENSCLAG00000006547 #9	RAB22A (ENSCLAG00000005077) #10	ENSCLAG00000004633	VAPB (ENSCLAG00000012950) #11	STX16 (ENSCLAG00000008863) #13	NPEPL1 (ENSCLAG00000007179)	ENSCLAG00000007891	ENSCLAG00000006989 #15	ENSCLAG00000006517	NELFCD (ENSCLAG00000005892) #16	CTSZ (ENSCLAG00000004846) #17	TUBB1 (ENSCLAG00000004602) #18	ATP5F1E (ENSCLAG00000008048) ##19	PRELID3B (ENSCLAG00000007144) #20	ZNF831 (ENSCLAG00000006267) #21	EDN3 (ENSCLAG00000007868) #22
Degu	MODERN SPECIES	337	RAB22A (ENSODEG00000000054) #10	ENSODEG00000018508	VAPB (ENSODEG00000000035) #11	STX16 (ENSODEG00000000389) #13	NPEPL1 (ENSODEG00000000364)	ENSODEG00000018581	ENSODEG00000000331	ENSODEG00000000317 #15	ENSODEG00000000305	ENSODEG00000000250 #16	ENSODEG00000000198 #17	TUBB1 (ENSODEG00000000178) #18	ATP5F1E (ENSODEG00000000169) ##19	ENSODEG00000000152 #20	ZNF831 (ENSODEG00000000139) #21	ENSODEG00000000116 #22	ENSODEG00000018518
Guinea pig	MODERN SPECIES	156	ENSCPOG00000019351	RAB22A (ENSCPOG00000008172) #10	VAPB (ENSCPOG00000022834) #11	STX16 (ENSCPOG00000027307) #13	NPEPL1 (ENSCPOG00000009271)	ENSCPOG00000037318	ENSCPOG00000009248	GNAS (ENSCPOG00000033190) #14	ENSCPOG00000030649 #15	NELFCD (ENSCPOG00000008591) #16	CTSZ (ENSCPOG00000026091) #17	TUBB1 (ENSCPOG00000038009) #18	ATP5F1E (ENSCPOG00000030890) ##19	PRELID3B (ENSCPOG00000030079) #20	ZNF831 (ENSCPOG00000004730) #21	EDN3 (ENSCPOG00000038386) #22