Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000157009 #10	ENSGT00940000155769 #11	ENSGT00640000091492.b #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT01090000260114 #15	ENSGT00940000156300.d #14	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921 #23	ENSGT00940000154543.a	ENSGT00940000158073 #24	ENSGT00390000011620.a.a.b	ENSGT00940000156010 #25	ENSGT00940000159695 #26	ENSGT00940000159853 #27	ENSGT00940000157379 #28	ENSGT00940000161502 #29	ENSGT00940000158762 #30	ENSGT00390000013839 #31	ENSGT00940000156537	ENSGT00390000017515.o.b.j #32
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155769 #11	ENSGT00640000091492.b #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00940000155271	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470.s ##19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921 #23	ENSGT00940000154543.a	ENSGT00940000158073 #24	ENSGT00390000011620.a.a.b	ENSGT00940000156010 #25	ENSGT00940000159695 #26	ENSGT00940000159853 #27	ENSGT00940000157379 #28	ENSGT00940000161502 #29	ENSGT00940000158762 #30	ENSGT00390000013839 #31	ENSGT00940000156537	ENSGT00390000017515.o.b.j #32
Naked mole-rat female	MODERN SPECIES	6	PCK1 (ENSHGLG00000018888) #7	C20orf85 (ENSHGLG00000019072) #8	ENSHGLG00000013351 #9	RAB22A (ENSHGLG00000009337) #10	VAPB (ENSHGLG00000049133) #11	APCDD1L (ENSHGLG00000044632) #12	STX16 (ENSHGLG00000005872) #13	ENSHGLG00000005914 #14	ENSHGLG00000005981 #15	ENSHGLG00000007894 #16	CTSZ (ENSHGLG00000050387) #17	TUBB1 (ENSHGLG00000007606) #18	ENSHGLG00000008231 #19	ENSHGLG00000009253 #20	ZNF831 (ENSHGLG00000010468) #21	EDN3 (ENSHGLG00000018677) #22	PPP1R3D (ENSHGLG00000033683) #23	ENSHGLG00000038944 #24	LSM14B (ENSHGLG00000015055) #25	ENSHGLG00000013634 #26	SS18L1 (ENSHGLG00000006752) #27	ENSHGLG00000049601 #28	ENSHGLG00000046738 #29	OSBPL2 (ENSHGLG00000015027) #30	ADRM1 (ENSHGLG00000005649) #31	RPS21 (ENSHGLG00000040061) #32	ENSHGLG00000044047 #33	ENSHGLG00000040253 #34	ENSHGLG00000006232 #35	NTSR1 (ENSHGLG00000037154) #36	MRGBP (ENSHGLG00000042672) #37
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00950000183066.a.b.a.b #9	ENSGT00940000157009 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470.s ##19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00390000015137	ENSGT00950000183066.a.b.a.b #9	ENSGT00940000157009 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470.s ##19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22
Long-tailed chinchilla	MODERN SPECIES	152	ENSCLAG00000006547 #9	RAB22A (ENSCLAG00000005077) #10	ENSCLAG00000004633	VAPB (ENSCLAG00000012950) #11	STX16 (ENSCLAG00000008863) #13	NPEPL1 (ENSCLAG00000007179)	ENSCLAG00000007891	ENSCLAG00000006989 #15	ENSCLAG00000006517	NELFCD (ENSCLAG00000005892) #16	CTSZ (ENSCLAG00000004846) #17	TUBB1 (ENSCLAG00000004602) #18	ATP5F1E (ENSCLAG00000008048) ##19	PRELID3B (ENSCLAG00000007144) #20	ZNF831 (ENSCLAG00000006267) #21	EDN3 (ENSCLAG00000007868) #22
Degu	MODERN SPECIES	337	RAB22A (ENSODEG00000000054) #10	ENSODEG00000018508	VAPB (ENSODEG00000000035) #11	STX16 (ENSODEG00000000389) #13	NPEPL1 (ENSODEG00000000364)	ENSODEG00000018581	ENSODEG00000000331	ENSODEG00000000317 #15	ENSODEG00000000305	ENSODEG00000000250 #16	ENSODEG00000000198 #17	TUBB1 (ENSODEG00000000178) #18	ATP5F1E (ENSODEG00000000169) ##19	ENSODEG00000000152 #20	ZNF831 (ENSODEG00000000139) #21	ENSODEG00000000116 #22	ENSODEG00000018518
Guinea pig	MODERN SPECIES	156	ENSCPOG00000019351	RAB22A (ENSCPOG00000008172) #10	VAPB (ENSCPOG00000022834) #11	STX16 (ENSCPOG00000027307) #13	NPEPL1 (ENSCPOG00000009271)	ENSCPOG00000037318	ENSCPOG00000009248	GNAS (ENSCPOG00000033190) #14	ENSCPOG00000030649 #15	NELFCD (ENSCPOG00000008591) #16	CTSZ (ENSCPOG00000026091) #17	TUBB1 (ENSCPOG00000038009) #18	ATP5F1E (ENSCPOG00000030890) ##19	PRELID3B (ENSCPOG00000030079) #20	ZNF831 (ENSCPOG00000004730) #21	EDN3 (ENSCPOG00000038386) #22
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000157009 #10	ENSGT00940000155769 #11	ENSGT00640000091492.b #12	ENSGT01000000214440.B.n #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921 #23	ENSGT00940000154543.a	ENSGT00940000158073 #24	ENSGT00390000011620.a.a.b	ENSGT00940000156010 #25	ENSGT00940000159695 #26	ENSGT00940000159853 #27	ENSGT00940000157379 #28	ENSGT00940000161502 #29	ENSGT00940000158762 #30	ENSGT00390000013839 #31	ENSGT00940000156537	ENSGT00390000017515.p ##32
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000155769 #11	ENSGT00640000091492.b #12	ENSGT01000000214440.B.n #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT01090000260114 #15	ENSGT00960000189526	ENSGT00940000156300.d #14	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.gb.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407	ENSGT00940000157965	ENSGT00940000161086	ENSGT00530000063693.b	ENSGT00940000160178	ENSGT00390000018547	ENSGT00940000159411.b	ENSGT00940000158764	ENSGT00940000163226	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b
Alpin marmot	MODERN SPECIES		ENSMMMG00000008844	RAB22A (ENSMMMG00000008862) #10	VAPB (ENSMMMG00000008874) #11	APCDD1L (ENSMMMG00000008880) #12	ENSMMMG00000008912 #13	NPEPL1 (ENSMMMG00000008927)	ENSMMMG00000008946	ENSMMMG00000008961	ENSMMMG00000008996 #14	ENSMMMG00000013417 #15	NELFCD (ENSMMMG00000013440) #16	CTSZ (ENSMMMG00000013461) #17	TUBB1 (ENSMMMG00000013513) #18	ENSMMMG00000013527 #20	ZNF831 (ENSMMMG00000013558) #21	EDN3 (ENSMMMG00000013570) #22	PKIG (ENSMMMG00000013597)	SERINC3 (ENSMMMG00000013611)	TTPAL (ENSMMMG00000013622)	HNF4A (ENSMMMG00000013628)	R3HDML (ENSMMMG00000013658)	FITM2 (ENSMMMG00000013666)	GDAP1L1 (ENSMMMG00000013671)	OSER1 (ENSMMMG00000013683)	ENSMMMG00000013694	TOX2 (ENSMMMG00000013708)	GTSF1L (ENSMMMG00000013745)	MYBL2 (ENSMMMG00000013751)	IFT52 (ENSMMMG00000013772)	SGK2 (ENSMMMG00000013793)	L3MBTL1 (ENSMMMG00000013828)
Marmotini_b	ANCESTRAL SPECIES	29	ENSGT00940000155769 #11	ENSGT00640000091492.b #12	ENSGT01000000214440.B.n #13	ENSGT00530000063255.A	ENSGT00390000006634	ENSGT00940000165887	ENSGT00960000189526	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.gb.a.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407	ENSGT00940000157965	ENSGT00940000161086	ENSGT00530000063693.b	ENSGT00940000160178	ENSGT00390000018547	ENSGT00940000159411.b	ENSGT00940000158764	ENSGT00940000163226	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b
Arctic ground squirrel	MODERN SPECIES	530	APCDD1L (ENSUPAG00010012543) #12	STX16 (ENSUPAG00010012517) #13	NPEPL1 (ENSUPAG00010012500)	ENSUPAG00010012495	ENSUPAG00010012486	ENSUPAG00010012481	ENSUPAG00010012458	ENSUPAG00010012443 #15	GNAS (ENSUPAG00010012379) #14	NELFCD (ENSUPAG00010012356) #16	CTSZ (ENSUPAG00010012349) #17	TUBB1 (ENSUPAG00010012345) #18	ATP5F1E (ENSUPAG00010012337) #19	PRELID3B (ENSUPAG00010012329) #20	ZNF831 (ENSUPAG00010012318) #21	EDN3 (ENSUPAG00010012292) #22
Squirrel	MODERN SPECIES	130	C20orf85 (ENSSTOG00000001088) #8	ANKRD60 (ENSSTOG00000025527)	RAB22A (ENSSTOG00000001120) #10	VAPB (ENSSTOG00000001129) #11	STX16 (ENSSTOG00000023815) #13	NPEPL1 (ENSSTOG00000012126)	ENSSTOG00000033348	ENSSTOG00000003551	ENSSTOG00000026582 #15	NELFCD (ENSSTOG00000011692) #16	CTSZ (ENSSTOG00000011704) #17	TUBB1 (ENSSTOG00000027296) #18	ATP5F1E (ENSSTOG00000032797) #19	ENSSTOG00000011707 #20	ZNF831 (ENSSTOG00000020220) #21	EDN3 (ENSSTOG00000012621) #22	ENSSTOG00000022041	ENSSTOG00000026859	PKIG (ENSSTOG00000015603)	SERINC3 (ENSSTOG00000015682)	TTPAL (ENSSTOG00000015677)	HNF4A (ENSSTOG00000020202)	R3HDML (ENSSTOG00000015652)	FITM2 (ENSSTOG00000029143)	GDAP1L1 (ENSSTOG00000015647)	OSER1 (ENSSTOG00000015641)	TOX2 (ENSSTOG00000015626)	MYBL2 (ENSSTOG00000010149)	IFT52 (ENSSTOG00000010141)	SGK2 (ENSSTOG00000010133)	ENSSTOG00000032451
Eurasian red squirrel	MODERN SPECIES	11	C20orf85 (ENSSVLG00005001802) #8	RAB22A (ENSSVLG00005001823) #10	VAPB (ENSSVLG00005001847) #11	STX16 (ENSSVLG00005001909) #13	NPEPL1 (ENSSVLG00005001996)	ENSSVLG00005002013	GNAS (ENSSVLG00005002064) #14	ENSSVLG00005002163	ENSSVLG00005002195 #15	NELFCD (ENSSVLG00005002237) #16	CTSZ (ENSSVLG00005002304) #17	TUBB1 (ENSSVLG00005002321) #18	ENSSVLG00005002334 #19	ENSSVLG00005002362 #20	ZNF831 (ENSSVLG00005002392) #21	EDN3 (ENSSVLG00005002438) #22	PHACTR3 (ENSSVLG00005002529)	ENSSVLG00005002613	PPP1R3D (ENSSVLG00005002650) #23	ENSSVLG00005002662	CDH4 (ENSSVLG00005002684) #24	TAF4 (ENSSVLG00005002767)	LSM14B (ENSSVLG00005002868) #25	ENSSVLG00005002918 #26	SS18L1 (ENSSVLG00005002951) #27	ENSSVLG00005002984 #28	HRH3 (ENSSVLG00005003009) #29	OSBPL2 (ENSSVLG00005003034) #30	ENSSVLG00005003084 #31	ENSSVLG00005003318 ##32	CABLES2 (ENSSVLG00005003344) #33