Murinae	ANCESTRAL SPECIES	1	ENSGT00940000157009 #11	ENSGT00860000136235	ENSGT00940000155769 #12	ENSGT00640000091492.b	ENSGT01000000214440.B #13	ENSGT00530000063255.A #14	ENSGT00390000006634	ENSGT00940000156300.d #15	ENSGT01090000260114	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921	ENSGT00940000154543.a	ENSGT00940000161589	ENSGT00940000158073	ENSGT00390000011620.a.a.b	ENSGT00940000156010	ENSGT00940000159695	ENSGT00940000159853	ENSGT00940000157379	ENSGT00940000161502	ENSGT00940000158762	ENSGT00390000013839	ENSGT00940000156537
Mus	ANCESTRAL SPECIES	1	ENSGT00390000015137 #10	ENSGT00940000157009 #11	ENSGT00860000136235	ENSGT00940000155769 #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A #14	ENSGT00390000006634	ENSGT00940000156300.d #15	ENSGT01090000260114	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921	ENSGT00940000154543.a	ENSGT00940000161589	ENSGT00940000158073	ENSGT00390000011620.a.a.b	ENSGT00940000156010	ENSGT00940000159695	ENSGT00940000159853	ENSGT00940000157379	ENSGT00940000161502	ENSGT00940000158762	ENSGT00390000013839	ENSGT00940000156537
Mus_A	ANCESTRAL SPECIES		ENSGT00390000015137 #10	ENSGT00940000157009 #11	ENSGT00860000136235	ENSGT00940000155769 #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A #14	ENSGT00390000006634	ENSGT00940000156300.d #15	ENSGT01090000260114	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.u #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921	ENSGT00940000154543.a	ENSGT00940000161589	ENSGT00940000158073	ENSGT00390000011620.a.a.b	ENSGT00940000156010	ENSGT00940000159695	ENSGT00940000159853	ENSGT00940000157379	ENSGT00940000161502	ENSGT00940000158762	ENSGT00390000013839	ENSGT00940000156537
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000015137 #10	ENSGT00940000157009 #11	ENSGT00860000136235	ENSGT00940000155769 #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A #14	ENSGT00390000006634	ENSGT00940000156300.d #15	ENSGT01090000260114	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.u #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921	ENSGT00940000154543.a	ENSGT00940000161589	ENSGT00940000158073	ENSGT00390000011620.a.a.b	ENSGT00940000156010	ENSGT00940000159695	ENSGT00940000159853	ENSGT00940000157379	ENSGT00940000161502	ENSGT00940000158762	ENSGT00390000013839	ENSGT00940000156537
Mouse	MODERN SPECIES	11	Zbp1 (ENSMUSG00000027514) #7	Pmepa1 (ENSMUSG00000038400) #8	1700021F07Rik (ENSMUSG00000027518) #9	Ankrd60 (ENSMUSG00000027517) #10	Rab22a (ENSMUSG00000027519) #11	Vapb (ENSMUSG00000054455) #12	Stx16 (ENSMUSG00000027522) #13	Npepl1 (ENSMUSG00000039263) #14	Gnas (ENSMUSG00000027523) #15	Nelfcd (ENSMUSG00000016253) #16	Ctsz (ENSMUSG00000016256) #17	Tubb1 (ENSMUSG00000016255) #18	Atp5e (ENSMUSG00000016252) #19	Prelid3b (ENSMUSG00000016257) #20	Zfp831 (ENSMUSG00000050600) #21	Edn3 (ENSMUSG00000027524) #22	Gm14444 (ENSMUSG00000078906) #23	Gm14393 (ENSMUSG00000078905) #24	Gm14399 (ENSMUSG00000090093) #25	Gm14443 (ENSMUSG00000078902) #26	Gm14391 (ENSMUSG00000078903) #27	Gm14440 (ENSMUSG00000078901) #28	Gm4631 (ENSMUSG00000078899) #29	Zfp968 (ENSMUSG00000078898) #30	Gm4724 (ENSMUSG00000078897) #31	Zfp965 (ENSMUSG00000078896) #32	Gm11007 (ENSMUSG00000094475) #33	Zfp969 (ENSMUSG00000095545) #34	Gm2007 (ENSMUSG00000094932) #35	Gm14288 (ENSMUSG00000078889) #36	Gm6710 (ENSMUSG00000078887) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000015137 #10	ENSGT00940000157009 #11	ENSGT00860000136235	ENSGT00940000155769 #12	ENSGT01000000214440.B #13	ENSGT00530000063255.A #14	ENSGT00390000006634	ENSGT00940000156300.d #15	ENSGT01090000260114	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.u #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562	ENSGT00530000063859.b	ENSGT00940000161921	ENSGT00940000154543.a	ENSGT00940000161589	ENSGT00940000158073	ENSGT00390000011620.a.a.b	ENSGT00940000156010	ENSGT00940000159695	ENSGT00940000159853	ENSGT00940000157379	ENSGT00940000161502	ENSGT00940000158762	ENSGT00390000013839	ENSGT00940000156537
spretus	MODERN SPECIES	11	1700021F07Rik (MGP_SPRETEiJ_G0025670) #9	Ankrd60 (MGP_SPRETEiJ_G0025671) #10	Rab22a (MGP_SPRETEiJ_G0025672) #11	MGP_SPRETEiJ_G0025673	Vapb (MGP_SPRETEiJ_G0025674) #12	Stx16 (MGP_SPRETEiJ_G0025675) #13	Npepl1 (MGP_SPRETEiJ_G0025676) #14	Gnas (MGP_SPRETEiJ_G0025677) #15	MGP_SPRETEiJ_G0025678	Nelfcd (MGP_SPRETEiJ_G0025679) #16	Ctsz (MGP_SPRETEiJ_G0025680) #17	Tubb1 (MGP_SPRETEiJ_G0025681) #18	Atp5e (MGP_SPRETEiJ_G0025682) #19	Prelid3b (MGP_SPRETEiJ_G0025683) #20	Zfp831 (MGP_SPRETEiJ_G0025684) #21	Edn3 (MGP_SPRETEiJ_G0025685) #22	Phactr3 (MGP_SPRETEiJ_G0025686)	Sycp2 (MGP_SPRETEiJ_G0025687)	Ppp1r3d (MGP_SPRETEiJ_G0025688)	Fam217b (MGP_SPRETEiJ_G0025689)	Cdh26 (MGP_SPRETEiJ_G0025690)	Cdh4 (MGP_SPRETEiJ_G0025691)	MGP_SPRETEiJ_G0025692	Lsm14b (MGP_SPRETEiJ_G0025693)	Psma7 (MGP_SPRETEiJ_G0025694)	Ss18l1 (MGP_SPRETEiJ_G0025695)	MGP_SPRETEiJ_G0025696	Hrh3 (MGP_SPRETEiJ_G0025697)	Osbpl2 (MGP_SPRETEiJ_G0025698)	MGP_SPRETEiJ_G0025699	Lama5 (MGP_SPRETEiJ_G0025700)
Steppe mouse	MODERN SPECIES	3237	Rab22a (ENSMSIG00000026825) #11	Vapb (ENSMSIG00000026843) #12	ENSMSIG00000026853	ENSMSIG00000026862	Stx16 (ENSMSIG00000026872) #13	Npepl1 (ENSMSIG00000026902) #14	ENSMSIG00000026915	Gnas (ENSMSIG00000026932) #15	ENSMSIG00000027279	Nelfcd (ENSMSIG00000027285) #16	Ctsz (ENSMSIG00000027319) #17	Tubb1 (ENSMSIG00000027325) #18	Atp5e (ENSMSIG00000027334) #19	Prelid3b (ENSMSIG00000027339) #20	Zfp831 (ENSMSIG00000027355) #21	Edn3 (ENSMSIG00000027362) #22
Ryukyu mouse	MODERN SPECIES	11	Pmepa1 (MGP_CAROLIEiJ_G0024749) #8	1700021F07Rik (MGP_CAROLIEiJ_G0024750) #9	Ankrd60 (MGP_CAROLIEiJ_G0024751) #10	Rab22a (MGP_CAROLIEiJ_G0024752) #11	Vapb (MGP_CAROLIEiJ_G0024753) #12	Stx16 (MGP_CAROLIEiJ_G0024754) #13	Npepl1 (MGP_CAROLIEiJ_G0024755) #14	Gnas (MGP_CAROLIEiJ_G0024756) #15	MGP_CAROLIEiJ_G0024757	Nelfcd (MGP_CAROLIEiJ_G0024758) #16	Ctsz (MGP_CAROLIEiJ_G0024759) #17	Tubb1 (MGP_CAROLIEiJ_G0024760) #18	Atp5e (MGP_CAROLIEiJ_G0024761) #19	Prelid3b (MGP_CAROLIEiJ_G0024762) #20	Zfp831 (MGP_CAROLIEiJ_G0024763) #21	Edn3 (MGP_CAROLIEiJ_G0024764) #22	Phactr3 (MGP_CAROLIEiJ_G0024765)	Ppp1r3d (MGP_CAROLIEiJ_G0024767)	Cdh4 (MGP_CAROLIEiJ_G0024768)	MGP_CAROLIEiJ_G0024769	Lsm14b (MGP_CAROLIEiJ_G0024770)	Psma7 (MGP_CAROLIEiJ_G0024771)	Ss18l1 (MGP_CAROLIEiJ_G0024772)	MGP_CAROLIEiJ_G0024773	Hrh3 (MGP_CAROLIEiJ_G0024774)	MGP_CAROLIEiJ_G0024775	MGP_CAROLIEiJ_G0024776	MGP_CAROLIEiJ_G0024777	MGP_CAROLIEiJ_G0024778	Gata5 (MGP_CAROLIEiJ_G0024779)	MGP_CAROLIEiJ_G0024780
Shrew mouse	MODERN SPECIES	16	Pmepa1 (MGP_PahariEiJ_G0026190) #8	1700021F07Rik (MGP_PahariEiJ_G0026191) #9	Ankrd60 (MGP_PahariEiJ_G0026192) #10	Rab22a (MGP_PahariEiJ_G0026193) #11	MGP_PahariEiJ_G0026194	Vapb (MGP_PahariEiJ_G0026195) #12	Stx16 (MGP_PahariEiJ_G0026196) #13	Npepl1 (MGP_PahariEiJ_G0026197) #14	Gnas (MGP_PahariEiJ_G0026198) #15	MGP_PahariEiJ_G0026199	Nelfcd (MGP_PahariEiJ_G0026200) #16	Ctsz (MGP_PahariEiJ_G0026201) #17	MGP_PahariEiJ_G0026202 #18	Prelid3b (MGP_PahariEiJ_G0026204) #20	Zfp831 (MGP_PahariEiJ_G0026205) #21	Edn3 (MGP_PahariEiJ_G0026206) #22	Phactr3 (MGP_PahariEiJ_G0026207)	Sycp2 (MGP_PahariEiJ_G0026208)	Ppp1r3d (MGP_PahariEiJ_G0026209)	Fam217b (MGP_PahariEiJ_G0026210)	Cdh26 (MGP_PahariEiJ_G0026211)	Cdh4 (MGP_PahariEiJ_G0026212)	MGP_PahariEiJ_G0026213	Lsm14b (MGP_PahariEiJ_G0026214)	Psma7 (MGP_PahariEiJ_G0026215)	Ss18l1 (MGP_PahariEiJ_G0026216)	MGP_PahariEiJ_G0026217	Hrh3 (MGP_PahariEiJ_G0026218)	Osbpl2 (MGP_PahariEiJ_G0026219)	MGP_PahariEiJ_G0026220	MGP_PahariEiJ_G0026221
Rat	MODERN SPECIES	13	Rab22a (ENSRNOG00000005762) #11	ENSRNOG00000069922	Vapb (ENSRNOG00000005331) #12	Apcdd1l (ENSRNOG00000028440)	Stx16 (ENSRNOG00000005281) #13	Npepl1 (ENSRNOG00000028384) #14	Gnas (ENSRNOG00000025889)	Gnas (ENSRNOG00000047374) #15	ENSRNOG00000062644	Nelfcd (ENSRNOG00000047874) #16	Ctsz (ENSRNOG00000050697) #17	Tubb1 (ENSRNOG00000046151) #18	Atp5f1e (ENSRNOG00000049912) #19	Prelid3b (ENSRNOG00000046644) #20	Zfp831 (ENSRNOG00000024693) #21	Edn3 (ENSRNOG00000007477) #22	ENSRNOG00000067347 ##32	ENSRNOG00000067752	ENSRNOG00000068131	LOC103690425 (ENSRNOG00000063044) ##32	ENSRNOG00000063189	LOC120101822 (ENSRNOG00000069723) ##32	ENSRNOG00000069989 ##37	ENSRNOG00000070526 ##32	LOC102550520 (ENSRNOG00000069524) ##37	LOC689816 (ENSRNOG00000068305)	LOC100912009 (ENSRNOG00000067302) ##37	ENSRNOG00000069241 ##37	LOC102554315 (ENSRNOG00000006112) #32	ENSRNOG00000070181 ##37	ENSRNOG00000068538