Murinae	ANCESTRAL SPECIES	1	ENSGT00940000157009 #9	ENSGT00860000136235 #10	ENSGT00940000155769 #11	ENSGT00640000091492.b	ENSGT01000000214440.B #12	ENSGT00530000063255.A #13	ENSGT00390000006634	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562 #23	ENSGT00530000063859.b #24	ENSGT00940000161921 #25	ENSGT00940000154543.a #26	ENSGT00940000161589 #27	ENSGT00940000158073 #28	ENSGT00390000011620.a.a.b #29	ENSGT00940000156010 #30	ENSGT00940000159695 #31	ENSGT00940000159853 #32	ENSGT00940000157379 #33	ENSGT00940000161502 #34	ENSGT00940000158762 #35	ENSGT00390000013839 #36	ENSGT00940000156537 #37
Mus	ANCESTRAL SPECIES	1	ENSGT00390000015137 #8	ENSGT00940000157009 #9	ENSGT00860000136235 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #12	ENSGT00530000063255.A #13	ENSGT00390000006634	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562 #23	ENSGT00530000063859.b #24	ENSGT00940000161921 #25	ENSGT00940000154543.a #26	ENSGT00940000161589 #27	ENSGT00940000158073 #28	ENSGT00390000011620.a.a.b #29	ENSGT00940000156010 #30	ENSGT00940000159695 #31	ENSGT00940000159853 #32	ENSGT00940000157379 #33	ENSGT00940000161502 #34	ENSGT00940000158762 #35	ENSGT00390000013839 #36	ENSGT00940000156537 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00390000015137 #8	ENSGT00940000157009 #9	ENSGT00860000136235 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #12	ENSGT00530000063255.A #13	ENSGT00390000006634	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.u #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562 #23	ENSGT00530000063859.b #24	ENSGT00940000161921 #25	ENSGT00940000154543.a #26	ENSGT00940000161589 #27	ENSGT00940000158073 #28	ENSGT00390000011620.a.a.b #29	ENSGT00940000156010 #30	ENSGT00940000159695 #31	ENSGT00940000159853 #32	ENSGT00940000157379 #33	ENSGT00940000161502 #34	ENSGT00940000158762 #35	ENSGT00390000013839 #36	ENSGT00940000156537 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000015137 #8	ENSGT00940000157009 #9	ENSGT00860000136235 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #12	ENSGT00530000063255.A #13	ENSGT00390000006634	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.u #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562 #23	ENSGT00530000063859.b #24	ENSGT00940000161921 #25	ENSGT00940000154543.a #26	ENSGT00940000161589 #27	ENSGT00940000158073 #28	ENSGT00390000011620.a.a.b #29	ENSGT00940000156010 #30	ENSGT00940000159695 #31	ENSGT00940000159853 #32	ENSGT00940000157379 #33	ENSGT00940000161502 #34	ENSGT00940000158762 #35	ENSGT00390000013839 #36	ENSGT00940000156537 #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000015137 #8	ENSGT00940000157009 #9	ENSGT00860000136235 #10	ENSGT00940000155769 #11	ENSGT01000000214440.B #12	ENSGT00530000063255.A #13	ENSGT00390000006634	ENSGT00940000156300.d #14	ENSGT01090000260114 #15	ENSGT00390000001799 #16	ENSGT00940000155569.a.a #17	ENSGT00940000159809 #18	ENSGT00390000015470 #19	ENSGT00950000182810.A.a.a.u #20	ENSGT00940000161664 #21	ENSGT00950000183053.C #22	ENSGT00940000157562 #23	ENSGT00530000063859.b #24	ENSGT00940000161921 #25	ENSGT00940000154543.a #26	ENSGT00940000161589 #27	ENSGT00940000158073 #28	ENSGT00390000011620.a.a.b #29	ENSGT00940000156010 #30	ENSGT00940000159695 #31	ENSGT00940000159853 #32	ENSGT00940000157379 #33	ENSGT00940000161502 #34	ENSGT00940000158762 #35	ENSGT00390000013839 #36	ENSGT00940000156537 #37
spretus	MODERN SPECIES	11	1700021F07Rik (MGP_SPRETEiJ_G0025670) #7	Ankrd60 (MGP_SPRETEiJ_G0025671) #8	Rab22a (MGP_SPRETEiJ_G0025672) #9	MGP_SPRETEiJ_G0025673 #10	Vapb (MGP_SPRETEiJ_G0025674) #11	Stx16 (MGP_SPRETEiJ_G0025675) #12	Npepl1 (MGP_SPRETEiJ_G0025676) #13	Gnas (MGP_SPRETEiJ_G0025677) #14	MGP_SPRETEiJ_G0025678 #15	Nelfcd (MGP_SPRETEiJ_G0025679) #16	Ctsz (MGP_SPRETEiJ_G0025680) #17	Tubb1 (MGP_SPRETEiJ_G0025681) #18	Atp5e (MGP_SPRETEiJ_G0025682) #19	Prelid3b (MGP_SPRETEiJ_G0025683) #20	Zfp831 (MGP_SPRETEiJ_G0025684) #21	Edn3 (MGP_SPRETEiJ_G0025685) #22	Phactr3 (MGP_SPRETEiJ_G0025686) #23	Sycp2 (MGP_SPRETEiJ_G0025687) #24	Ppp1r3d (MGP_SPRETEiJ_G0025688) #25	Fam217b (MGP_SPRETEiJ_G0025689) #26	Cdh26 (MGP_SPRETEiJ_G0025690) #27	Cdh4 (MGP_SPRETEiJ_G0025691) #28	MGP_SPRETEiJ_G0025692 #29	Lsm14b (MGP_SPRETEiJ_G0025693) #30	Psma7 (MGP_SPRETEiJ_G0025694) #31	Ss18l1 (MGP_SPRETEiJ_G0025695) #32	MGP_SPRETEiJ_G0025696 #33	Hrh3 (MGP_SPRETEiJ_G0025697) #34	Osbpl2 (MGP_SPRETEiJ_G0025698) #35	MGP_SPRETEiJ_G0025699 #36	Lama5 (MGP_SPRETEiJ_G0025700) #37
Steppe mouse	MODERN SPECIES	3237	Rab22a (ENSMSIG00000026825) #9	Vapb (ENSMSIG00000026843) #11	ENSMSIG00000026853	ENSMSIG00000026862	Stx16 (ENSMSIG00000026872) #12	Npepl1 (ENSMSIG00000026902) #13	ENSMSIG00000026915	Gnas (ENSMSIG00000026932) #14	ENSMSIG00000027279 #15	Nelfcd (ENSMSIG00000027285) #16	Ctsz (ENSMSIG00000027319) #17	Tubb1 (ENSMSIG00000027325) #18	Atp5e (ENSMSIG00000027334) #19	Prelid3b (ENSMSIG00000027339) #20	Zfp831 (ENSMSIG00000027355) #21	Edn3 (ENSMSIG00000027362) #22
Mouse	MODERN SPECIES	11	Zbp1 (ENSMUSG00000027514)	Pmepa1 (ENSMUSG00000038400)	1700021F07Rik (ENSMUSG00000027518) #7	Ankrd60 (ENSMUSG00000027517) #8	Rab22a (ENSMUSG00000027519) #9	Vapb (ENSMUSG00000054455) #11	Stx16 (ENSMUSG00000027522) #12	Npepl1 (ENSMUSG00000039263) #13	Gnas (ENSMUSG00000027523) #14	Nelfcd (ENSMUSG00000016253) #16	Ctsz (ENSMUSG00000016256) #17	Tubb1 (ENSMUSG00000016255) #18	Atp5e (ENSMUSG00000016252) #19	Prelid3b (ENSMUSG00000016257) #20	Zfp831 (ENSMUSG00000050600) #21	Edn3 (ENSMUSG00000027524) #22	Gm14444 (ENSMUSG00000078906)	Gm14393 (ENSMUSG00000078905)	Gm14399 (ENSMUSG00000090093)	Gm14443 (ENSMUSG00000078902)	Gm14391 (ENSMUSG00000078903)	Gm14440 (ENSMUSG00000078901)	Gm4631 (ENSMUSG00000078899)	Zfp968 (ENSMUSG00000078898)	Gm4724 (ENSMUSG00000078897)	Zfp965 (ENSMUSG00000078896)	Gm11007 (ENSMUSG00000094475)	Zfp969 (ENSMUSG00000095545)	Gm2007 (ENSMUSG00000094932)	Gm14288 (ENSMUSG00000078889)	Gm6710 (ENSMUSG00000078887)
Ryukyu mouse	MODERN SPECIES	11	Pmepa1 (MGP_CAROLIEiJ_G0024749)	1700021F07Rik (MGP_CAROLIEiJ_G0024750) #7	Ankrd60 (MGP_CAROLIEiJ_G0024751) #8	Rab22a (MGP_CAROLIEiJ_G0024752) #9	Vapb (MGP_CAROLIEiJ_G0024753) #11	Stx16 (MGP_CAROLIEiJ_G0024754) #12	Npepl1 (MGP_CAROLIEiJ_G0024755) #13	Gnas (MGP_CAROLIEiJ_G0024756) #14	MGP_CAROLIEiJ_G0024757 #15	Nelfcd (MGP_CAROLIEiJ_G0024758) #16	Ctsz (MGP_CAROLIEiJ_G0024759) #17	Tubb1 (MGP_CAROLIEiJ_G0024760) #18	Atp5e (MGP_CAROLIEiJ_G0024761) #19	Prelid3b (MGP_CAROLIEiJ_G0024762) #20	Zfp831 (MGP_CAROLIEiJ_G0024763) #21	Edn3 (MGP_CAROLIEiJ_G0024764) #22	Phactr3 (MGP_CAROLIEiJ_G0024765) #23	Ppp1r3d (MGP_CAROLIEiJ_G0024767) #25	Cdh4 (MGP_CAROLIEiJ_G0024768) #28	MGP_CAROLIEiJ_G0024769 #29	Lsm14b (MGP_CAROLIEiJ_G0024770) #30	Psma7 (MGP_CAROLIEiJ_G0024771) #31	Ss18l1 (MGP_CAROLIEiJ_G0024772) #32	MGP_CAROLIEiJ_G0024773 #33	Hrh3 (MGP_CAROLIEiJ_G0024774) #34	MGP_CAROLIEiJ_G0024775 #35	MGP_CAROLIEiJ_G0024776 #36	MGP_CAROLIEiJ_G0024777 #37	MGP_CAROLIEiJ_G0024778	Gata5 (MGP_CAROLIEiJ_G0024779)	MGP_CAROLIEiJ_G0024780
Shrew mouse	MODERN SPECIES	16	Pmepa1 (MGP_PahariEiJ_G0026190)	1700021F07Rik (MGP_PahariEiJ_G0026191) #7	Ankrd60 (MGP_PahariEiJ_G0026192) #8	Rab22a (MGP_PahariEiJ_G0026193) #9	MGP_PahariEiJ_G0026194	Vapb (MGP_PahariEiJ_G0026195) #11	Stx16 (MGP_PahariEiJ_G0026196) #12	Npepl1 (MGP_PahariEiJ_G0026197) #13	Gnas (MGP_PahariEiJ_G0026198) #14	MGP_PahariEiJ_G0026199 #15	Nelfcd (MGP_PahariEiJ_G0026200) #16	Ctsz (MGP_PahariEiJ_G0026201) #17	MGP_PahariEiJ_G0026202 #18	Prelid3b (MGP_PahariEiJ_G0026204) #20	Zfp831 (MGP_PahariEiJ_G0026205) #21	Edn3 (MGP_PahariEiJ_G0026206) #22	Phactr3 (MGP_PahariEiJ_G0026207) #23	Sycp2 (MGP_PahariEiJ_G0026208) #24	Ppp1r3d (MGP_PahariEiJ_G0026209) #25	Fam217b (MGP_PahariEiJ_G0026210) #26	Cdh26 (MGP_PahariEiJ_G0026211) #27	Cdh4 (MGP_PahariEiJ_G0026212) #28	MGP_PahariEiJ_G0026213 #29	Lsm14b (MGP_PahariEiJ_G0026214) #30	Psma7 (MGP_PahariEiJ_G0026215) #31	Ss18l1 (MGP_PahariEiJ_G0026216) #32	MGP_PahariEiJ_G0026217 #33	Hrh3 (MGP_PahariEiJ_G0026218) #34	Osbpl2 (MGP_PahariEiJ_G0026219) #35	MGP_PahariEiJ_G0026220 #36	MGP_PahariEiJ_G0026221 #36
Rat	MODERN SPECIES	13	Rab22a (ENSRNOG00000005762) #9	ENSRNOG00000069922 #10	Vapb (ENSRNOG00000005331) #11	Apcdd1l (ENSRNOG00000028440)	Stx16 (ENSRNOG00000005281) #12	Npepl1 (ENSRNOG00000028384) #13	Gnas (ENSRNOG00000025889)	Gnas (ENSRNOG00000047374) #14	ENSRNOG00000062644 #15	Nelfcd (ENSRNOG00000047874) #16	Ctsz (ENSRNOG00000050697) #17	Tubb1 (ENSRNOG00000046151) #18	Atp5f1e (ENSRNOG00000049912) #19	Prelid3b (ENSRNOG00000046644) #20	Zfp831 (ENSRNOG00000024693) #21	Edn3 (ENSRNOG00000007477) #22	ENSRNOG00000067347	ENSRNOG00000067752	ENSRNOG00000068131	LOC103690425 (ENSRNOG00000063044)	ENSRNOG00000063189	LOC120101822 (ENSRNOG00000069723)	ENSRNOG00000069989	ENSRNOG00000070526	LOC102550520 (ENSRNOG00000069524)	LOC689816 (ENSRNOG00000068305)	LOC100912009 (ENSRNOG00000067302)	ENSRNOG00000069241	LOC102554315 (ENSRNOG00000006112)	ENSRNOG00000070181	ENSRNOG00000068538