Theria ANCESTRAL SPECIES ENSGT00950000183010.b #22 Eutheria ANCESTRAL SPECIES ENSGT00950000183010.b #22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000183010.b #22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000183010.b #22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Artiodactyla ANCESTRAL SPECIES ENSGT00950000183010.b #22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000183010.b #22 Cetacea ANCESTRAL SPECIES ENSGT00950000183010.b #22 Odontoceti ANCESTRAL SPECIES ENSGT00950000183010.b #22 Odontoceti_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Dolphin MODERN SPECIES 4680 RPL17 (ENSTTRG00000005797) #22 CUNH18orf32 (ENSTTRG00000005809) #23 DYM (ENSTTRG00000005815) #24 Odontoceti_b ANCESTRAL SPECIES ENSGT00950000183010.b #22 Monodontidae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Narwhal MODERN SPECIES 310 LHFPL5 (ENSMMNG00015010434) SRPK1 (ENSMMNG00015010401) ENSMMNG00015010381 ENSMMNG00015010370 SLC26A8 (ENSMMNG00015010307) MAPK14 (ENSMMNG00015010235) MAPK13 (ENSMMNG00015010177) BRPF3 (ENSMMNG00015010147) PNPLA1 (ENSMMNG00015010111) BNIP5 (ENSMMNG00015010092) PXT1 (ENSMMNG00015010063) KCTD20 (ENSMMNG00015010053) STK38 (ENSMMNG00015010042) ENSMMNG00015010032 SRSF3 (ENSMMNG00015010026) ENSMMNG00015010020 #22 CDKN1A (ENSMMNG00015010015) RAB44 (ENSMMNG00015009997) CPNE5 (ENSMMNG00015009937) PPIL1 (ENSMMNG00015009922) C6orf89 (ENSMMNG00015009906) PI16 (ENSMMNG00015009900) MTCH1 (ENSMMNG00015009874) FGD2 (ENSMMNG00015009811) PIM1 (ENSMMNG00015009784) TMEM217B (ENSMMNG00015009776) TMEM217 (ENSMMNG00015009766) TBC1D22B (ENSMMNG00015009750) RNF8 (ENSMMNG00015013513) CMTR1 (ENSMMNG00015013483) ENSMMNG00015013469 Pecora ANCESTRAL SPECIES ENSGT00950000183010.b #22 Percora_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Bovidae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Caprinae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Goat MODERN SPECIES 22 HJV (ENSCHIG00000010408) TXNIP (ENSCHIG00000017689) POLR3GL (ENSCHIG00000008824) ANKRD34A (ENSCHIG00000007942) LIX1L (ENSCHIG00000012584) RBM8A (ENSCHIG00000012114) ITGA10 (ENSCHIG00000027027) ANKRD35 (ENSCHIG00000018547) PIAS3 (ENSCHIG00000010071) NUDT17 (ENSCHIG00000014413) POLR3C (ENSCHIG00000022431) RNF115 (ENSCHIG00000025502) PDZK1 (ENSCHIG00000011722) ENSCHIG00000017806 GJA5 (ENSCHIG00000010714) ENSCHIG00000018629 #22 ACP6 (ENSCHIG00000024823) BCL9 (ENSCHIG00000009988) ENSCHIG00000009796 ENSCHIG00000022455 ENSCHIG00000026995 CHD1L (ENSCHIG00000013871) FMO5 (ENSCHIG00000014242) PRKAB2 (ENSCHIG00000015966) PDE4DIP (ENSCHIG00000010241) SEC22B (ENSCHIG00000010105) NOTCH2 (ENSCHIG00000022464) ADAM30 (ENSCHIG00000027182) REG4 (ENSCHIG00000015183) HMGCS2 (ENSCHIG00000025654) PHGDH (ENSCHIG00000018423) Yarkand deer MODERN SPECIES 15 TMEM239 (ENSCHYG00000014665) C20orf141 (ENSCHYG00000014683) CPXM1 (ENSCHYG00000014740) EBF4 (ENSCHYG00000014974) IDH3B (ENSCHYG00000015279) NOP56 (ENSCHYG00000015519) TMC2 (ENSCHYG00000015951) ENSCHYG00000016253 SNRPB (ENSCHYG00000016280) TGM6 (ENSCHYG00000016358) ENSCHYG00000016577 TGM3 (ENSCHYG00000016615) STK35 (ENSCHYG00000016840) PDYN (ENSCHYG00000016917) ENSCHYG00000016987 ENSCHYG00000017131 #22 ENSCHYG00000017151 ENSCHYG00000017221 PCMTD2 (ENSCHYG00000017351) MYT1 (ENSCHYG00000017443) NPBWR2 (ENSCHYG00000017937) OPRL1 (ENSCHYG00000017976) PRPF6 (ENSCHYG00000018098) ENSCHYG00000019147 RGS19 (ENSCHYG00000019180) SOX18 (ENSCHYG00000019250) C20orf204 (ENSCHYG00000019341) ENSCHYG00000019401 ZNF512B (ENSCHYG00000019540) UCKL1 (ENSCHYG00000019790) DNAJC5 (ENSCHYG00000020210) Camelidae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Alpaca MODERN SPECIES 2191 ENSVPAG00000009571 ENSVPAG00000009568 #22 ENSVPAG00000009567 #23 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000183010.b #22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000183010.b #22 Chiroptera ANCESTRAL SPECIES 26 ENSGT00940000158867 ENSGT00940000160973 ENSGT00940000157435 ENSGT00730000111224 ENSGT00950000183134.c.b ENSGT00940000161642 ENSGT00940000159850 ENSGT00390000011654 ENSGT00730000111044 ENSGT00950000183005.a.a ENSGT01050000244995 ENSGT00940000155402.a.b ENSGT01030000234626.D ENSGT00940000159394 ENSGT00950000183010.a.b.a.b.b.b ##22 ENSGT00950000183010.b #22 ENSGT00390000018741 #23 ENSGT00390000008772 #24 ENSGT00940000159872 ENSGT00940000153432.A.b ENSGT00940000159814 ENSGT00940000153499.a ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 ENSGT00390000002428.a.g.b ENSGT00940000157302 ENSGT01030000234539.a.a.b.b ENSGT01030000234535.C ENSGT00390000018830 ENSGT00940000156997 Megabat MODERN SPECIES 622 LIPG (ENSPVAG00000001970) RPL17 (ENSPVAG00000001969) #22 C18orf32 (ENSPVAG00000001968) #23 DYM (ENSPVAG00000001967) #24 SMAD7 (ENSPVAG00000001966) CTIF (ENSPVAG00000001965) Carnivora ANCESTRAL SPECIES ENSGT00950000183010.b #22 Caniformia ANCESTRAL SPECIES ENSGT00950000183010.b #22 Canidae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Red fox MODERN SPECIES ZNF280D (ENSVVUG00000001009) ENSVVUG00000001065 TCF12 (ENSVVUG00000001081) CGNL1 (ENSVVUG00000001119) MYZAP (ENSVVUG00000001200) POLR2M (ENSVVUG00000001253) ALDH1A2 (ENSVVUG00000001283) AQP9 (ENSVVUG00000001306) LIPC (ENSVVUG00000001352) ADAM10 (ENSVVUG00000001386) MINDY2 (ENSVVUG00000001426) SLTM (ENSVVUG00000001450) RNF111 (ENSVVUG00000001485) CCNB2 (ENSVVUG00000001497) MYO1E (ENSVVUG00000001541) ENSVVUG00000001567 #22 FAM81A (ENSVVUG00000001584) GCNT3 (ENSVVUG00000001601) GTF2A2 (ENSVVUG00000001625) BNIP2 (ENSVVUG00000001765) FOXB1 (ENSVVUG00000001836) ENSVVUG00000001864 ANXA2 (ENSVVUG00000001871) ICE2 (ENSVVUG00000001884) RORA (ENSVVUG00000001910) ENSVVUG00000001953 ENSVVUG00000001972 ENSVVUG00000002002 VPS13C (ENSVVUG00000002780) TLN2 (ENSVVUG00000009412) TPM1 (ENSVVUG00000011282) Canis_lupus ANCESTRAL SPECIES ENSGT00950000183010.b #22 Dog MODERN SPECIES 36 KIAA0586 (ENSCAFG00845019145) TIMM9 (ENSCAFG00845019018) TOMM20L (ENSCAFG00845018941) ARID4A (ENSCAFG00845018674) PSMA3 (ENSCAFG00845018487) ACTR10 (ENSCAFG00845018264) ENSCAFG00845018183 ARMH4 (ENSCAFG00845018091) ENSCAFG00845018031 SLC35F4 (ENSCAFG00845017859) CCDC198 (ENSCAFG00845017758) NAA30 (ENSCAFG00845017715) AP5M1 (ENSCAFG00845017449) EXOC5 (ENSCAFG00845017251) ENSCAFG00845017176 ENSCAFG00845017134 #22 OTX2 (ENSCAFG00845017045) TMEM260 (ENSCAFG00845016875) PELI2 (ENSCAFG00845016504) ENSCAFG00845016467 KTN1 (ENSCAFG00845015557) TBPL2 (ENSCAFG00845015295) ATG14 (ENSCAFG00845015264) FBXO34 (ENSCAFG00845015219) DLGAP5 (ENSCAFG00845015070) LGALS3 (ENSCAFG00845015017) MAPK1IP1L (ENSCAFG00845014969) SOCS4 (ENSCAFG00845014951) WDHD1 (ENSCAFG00845014810) GCH1 (ENSCAFG00845014724) SAMD4A (ENSCAFG00845004567) Eulipotyphla ANCESTRAL SPECIES ENSGT00950000183010.b #22 Common shrew MODERN SPECIES 5597 ENSSARG00000001120 #22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000183010.b #22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000183010.b #22 Tree shrew MODERN SPECIES 4138 ENSTBEG00000015847 #22 Glires ANCESTRAL SPECIES ENSGT00950000183010.b #22 Rodentia ANCESTRAL SPECIES ENSGT00950000183010.b #22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000183010.b #22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000183010.b #22 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 9 SMAD4 (ENSHGLG00000005758) ENSHGLG00000045506 MEX3C (ENSHGLG00000004567) DCC (ENSHGLG00000005265) ENSHGLG00000033712 MBD2 (ENSHGLG00000039782) ENSHGLG00000008868 ENSHGLG00000004780 ENSHGLG00000045151 ENSHGLG00000048044 ENSHGLG00000037393 ENSHGLG00000008021 ENSHGLG00000038847 ENSHGLG00000006292 LIPG (ENSHGLG00000010224) ENSHGLG00000047452 #22 ENSHGLG00000036153 ##22 ENSHGLG00000009081 #23 ENSHGLG00000015030 #24 ENSHGLG00000040505 ENSHGLG00000048272 ENSHGLG00000042101 ENSHGLG00000031912 SMAD2 (ENSHGLG00000008711) SKOR2 (ENSHGLG00000035792) ENSHGLG00000048898 HDHD2 (ENSHGLG00000010130) ENSHGLG00000034217 ENSHGLG00000040167 PIAS2 (ENSHGLG00000015588) ST8SIA5 (ENSHGLG00000040367) Naked mole-rat female MODERN SPECIES 26 ENSHGLG00000048563 HPGDS (ENSHGLG00000039097) ENSHGLG00000005070 ENSHGLG00000037196 ENSHGLG00000033791 ENSHGLG00000020623 GRID2 (ENSHGLG00000004059) ENSHGLG00000037793 ENSHGLG00000048185 ENSHGLG00000037139 CCSER1 (ENSHGLG00000003812) ENSHGLG00000003688 MMRN1 (ENSHGLG00000003604) Snca (ENSHGLG00000010096) GPRIN3 (ENSHGLG00000046655) ENSHGLG00000009359 #22 ENSHGLG00000033154 ##22 TIGD2 (ENSHGLG00000009014) ENSHGLG00000036340 FAM13A (ENSHGLG00000008677) ENSHGLG00000008024 ENSHGLG00000044432 ENSHGLG00000049646 ENSHGLG00000008337 PYURF (ENSHGLG00000040751) ENSHGLG00000046958 ENSHGLG00000037237 ENSHGLG00000007578 ENSHGLG00000007617 ENSHGLG00000041318 ENSHGLG00000015484 Rodentia_B ANCESTRAL SPECIES ENSGT00950000183010.b #22 Myomorpha ANCESTRAL SPECIES ENSGT00950000183010.b #22 Muroidea ANCESTRAL SPECIES ENSGT00950000183010.b #22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000183010.b #22 Murinae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Mus ANCESTRAL SPECIES ENSGT00950000183010.b #22 Mus_A ANCESTRAL SPECIES ENSGT00950000183010.b #22 Ryukyu mouse MODERN SPECIES 9 Hdhd2 (MGP_CAROLIEiJ_G0022413) Katnal2 (MGP_CAROLIEiJ_G0022414) Pias2 (MGP_CAROLIEiJ_G0022415) MGP_CAROLIEiJ_G0022416 St8sia5 (MGP_CAROLIEiJ_G0022417) Loxhd1 (MGP_CAROLIEiJ_G0022418) Rnf165 (MGP_CAROLIEiJ_G0022419) 8030462N17Rik (MGP_CAROLIEiJ_G0022420) Haus1 (MGP_CAROLIEiJ_G0022421) Atp5a1 (MGP_CAROLIEiJ_G0022422) Pstpip2 (MGP_CAROLIEiJ_G0022423) MGP_CAROLIEiJ_G0022424 Siglec15 (MGP_CAROLIEiJ_G0022425) Slc14a1 (MGP_CAROLIEiJ_G0022426) Slc14a2 (MGP_CAROLIEiJ_G0022427) MGP_CAROLIEiJ_G0022428 #22 Setbp1 (MGP_CAROLIEiJ_G0022429) Pard6g (MGP_CAROLIEiJ_G0022430) MGP_CAROLIEiJ_G0022431 Adnp2 (MGP_CAROLIEiJ_G0022432) Rbfa (MGP_CAROLIEiJ_G0022433) Naa12 (MGP_CAROLIEiJ_G0022434) Txnl4a (MGP_CAROLIEiJ_G0022435) Hsbp1l1 (MGP_CAROLIEiJ_G0022436) Slc66a2 (MGP_CAROLIEiJ_G0022437) Kcng2 (MGP_CAROLIEiJ_G0022438) Ctdp1 (MGP_CAROLIEiJ_G0022439) Nfatc1 (MGP_CAROLIEiJ_G0022440) Atp9b (MGP_CAROLIEiJ_G0022441) Sall3 (MGP_CAROLIEiJ_G0022442) Galr1 (MGP_CAROLIEiJ_G0022443) Cricetidae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000183010.b #22 Northern American deer mouse MODERN SPECIES 2 Ptprc (ENSPEMG00000018831) Atp6v1g3 (ENSPEMG00000008005) Nek7 (ENSPEMG00000011432) Lhx9 (ENSPEMG00000019135) 2310009B15Rik (ENSPEMG00000017082) ENSPEMG00000016954 Dennd1b (ENSPEMG00000010415) Crb1 (ENSPEMG00000008221) Zbtb41 (ENSPEMG00000015763) ENSPEMG00000015687 F13b (ENSPEMG00000011923) ENSPEMG00000029106 ENSPEMG00000011920 ENSPEMG00000012098 ENSPEMG00000025695 ENSPEMG00000004393 #22 Kcnt2 (ENSPEMG00000023756) ENSPEMG00000026292 ENSPEMG00000030533 ENSPEMG00000013578 Cdc73 (ENSPEMG00000017241) B3galt2 (ENSPEMG00000026087) ENSPEMG00000018784 Ro60 (ENSPEMG00000001419) Uchl5 (ENSPEMG00000002439) Rgs2 (ENSPEMG00000008350) Rgs13 (ENSPEMG00000011301) Rgs1 (ENSPEMG00000012482) Rgs21 (ENSPEMG00000012866) Rgs18 (ENSPEMG00000023775) ENSPEMG00000025536 Primates ANCESTRAL SPECIES ENSGT00950000183010.b #22 Strepsirrhini ANCESTRAL SPECIES ENSGT00950000183010.b #22 Lemuriformes ANCESTRAL SPECIES ENSGT00950000183010.b #22 Lemuriformes_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Coquerels sifaka MODERN SPECIES 229 ENSPCOG00000026256 ENSPCOG00000020995 ENSPCOG00000019603 TMEM170A (ENSPCOG00000024358) CFDP1 (ENSPCOG00000022202) BCAR1 (ENSPCOG00000002318) ENSPCOG00000003933 ZFP1 (ENSPCOG00000023041) LDHD (ENSPCOG00000019548) ZNRF1 (ENSPCOG00000006025) WDR59 (ENSPCOG00000025973) FA2H (ENSPCOG00000012475) MLKL (ENSPCOG00000020175) RFWD3 (ENSPCOG00000022063) GLG1 (ENSPCOG00000013469) ENSPCOG00000011409 #22 PDPR (ENSPCOG00000020819) ENSPCOG00000023979 AARS1 (ENSPCOG00000016630) ENSPCOG00000019813 DDX19B (ENSPCOG00000021652) ENSPCOG00000018325 DDX19A (ENSPCOG00000015782) ST3GAL2 (ENSPCOG00000022065) FCSK (ENSPCOG00000027743) COG4 (ENSPCOG00000020809) ENSPCOG00000018838 SF3B3 (ENSPCOG00000026582) ENSPCOG00000022877 MTSS2 (ENSPCOG00000023787) VAC14 (ENSPCOG00000025988) Haplorrhini ANCESTRAL SPECIES ENSGT00950000183010.b #22 Simiiformes ANCESTRAL SPECIES ENSGT00950000183010.b #22 Platyrrhini ANCESTRAL SPECIES ENSGT00950000183010.b #22 Cebidae ANCESTRAL SPECIES ENSGT00950000183010.b #22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Capuchin MODERN SPECIES 50 ENC1 (ENSCCAG00000017658) ARHGEF28 (ENSCCAG00000030516) UTP15 (ENSCCAG00000033397) ANKRA2 (ENSCCAG00000033227) ENSCCAG00000033236 FOXD1 (ENSCCAG00000006678) TMEM174 (ENSCCAG00000026904) TMEM171 (ENSCCAG00000032407) FCHO2 (ENSCCAG00000020869) TNPO1 (ENSCCAG00000026472) ZNF366 (ENSCCAG00000021177) ENSCCAG00000029389 MRPS27 (ENSCCAG00000030550) MAP1B (ENSCCAG00000025393) ENSCCAG00000033067 ENSCCAG00000026040 #22 CARTPT (ENSCCAG00000021730) ENSCCAG00000020273 MCCC2 (ENSCCAG00000033706) BDP1 (ENSCCAG00000033596) SERF1B (ENSCCAG00000031324) ENSCCAG00000018127 ENSCCAG00000031800 OCLN (ENSCCAG00000021176) ENSCCAG00000019925 ENSCCAG00000031439 MARVELD2 (ENSCCAG00000029566) RAD17 (ENSCCAG00000037823) AK6 (ENSCCAG00000021405) CCDC125 (ENSCCAG00000025219) ENSCCAG00000029589 Atlantogenata ANCESTRAL SPECIES ENSGT00950000183010.b #22 Xenarthra ANCESTRAL SPECIES ENSGT00950000183010.b #22 Sloth MODERN SPECIES 11141 RPL17 (ENSCHOG00000007872) #22 Afrotheria ANCESTRAL SPECIES ENSGT00950000183010.b #22 Afrotheria_a ANCESTRAL SPECIES ENSGT00950000183010.b #22 Hyrax MODERN SPECIES 7339 RPL17 (ENSPCAG00000003103) #22 Tenrec MODERN SPECIES 6990 ENSETEG00000011322 #22 DYM (ENSETEG00000011314) #24 Marsupialia ANCESTRAL SPECIES ENSGT00950000183010.b #22 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000183010.b #22 Diprotodontia ANCESTRAL SPECIES 1 ENSGT00950000183005.a.b ENSGT00940000158867 ENSGT00940000160973 ENSGT00940000157435 ENSGT00730000111224 ENSGT00950000183134.c.b ENSGT00940000161642 ENSGT00940000159850 ENSGT00940000166139 ENSGT00940000164634 ENSGT01070000254624 ENSGT00940000155402.a.b ENSGT01030000234626.D ENSGT00940000159394 ENSGT00950000183010.a.b.a.a.a.b ##22 ENSGT00950000183010.b #22 ENSGT00390000018741 #23 ENSGT00390000008772 #24 ENSGT00940000159872 ENSGT00940000153432.A.b ENSGT00940000159814 ENSGT00940000153499.a ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 ENSGT00940000157302 ENSGT01030000234539.a.a.b.b ENSGT01030000234535.C ENSGT00390000018830 ENSGT00940000156997 ENSGT00390000016167 Wallaby MODERN SPECIES 8542 ENSMEUG00000016709 #22 C18orf32 (ENSMEUG00000016705) #23