Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.b ##34	ENSGT00390000016735	ENSGT00390000000053
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00440000039287	ENSGT00940000163044
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00440000039287	ENSGT00940000163044
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##34	ENSGT00440000039287
Cetacea	ANCESTRAL SPECIES	1	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a.m #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##34	ENSGT00440000039287	ENSGT00940000163044
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a.m #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a ##34	ENSGT00440000039287	ENSGT00940000163044
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a.m #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b ##34	ENSGT00440000039287	ENSGT00940000163783
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a.m #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b ##34	ENSGT00440000039287	ENSGT00940000163783
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a.m #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000266406	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b ##34	ENSGT00440000039287	ENSGT00940000163783
Beluga whale	MODERN SPECIES	27	NACC1 (ENSDLEG00000010956) #7	TRMT1 (ENSDLEG00000010945) #8	LYL1 (ENSDLEG00000010935) #9	NFIX (ENSDLEG00000010831) #10	GADD45GIP1 (ENSDLEG00000010807) #11	RAD23A (ENSDLEG00000010781) #12	CALR (ENSDLEG00000010762) #13	FARSA (ENSDLEG00000010737) #14	SYCE2 (ENSDLEG00000010725) #15	KLF1 (ENSDLEG00000010698) #16	GCDH (ENSDLEG00000010654) #17	DNASE2 (ENSDLEG00000010624) #18	MAST1 (ENSDLEG00000010566) #19	RTBDN (ENSDLEG00000010548) #20	RNASEH2A (ENSDLEG00000010529) #21	PRDX2 (ENSDLEG00000010520) #22	JUNB (ENSDLEG00000010512) #23	HOOK2 (ENSDLEG00000010436) #24	BEST2 (ENSDLEG00000010397) #25	ASNA1 (ENSDLEG00000010378) #26	TRIR (ENSDLEG00000010365) #27	TNPO2 (ENSDLEG00000010236) #28	FBXW9 (ENSDLEG00000010197) #29	DHPS (ENSDLEG00000010176) #30	WDR83 (ENSDLEG00000010152) #31	WDR83OS (ENSDLEG00000010133) #32	MAN2B1 (ENSDLEG00000010021) #33	ENSDLEG00000010003 #34	ENSDLEG00000009987 #35	ENSDLEG00000009975 #36	ENSDLEG00000009886 #37
Narwhal	MODERN SPECIES	298	LYL1 (ENSMMNG00015005401) #9	NFIX (ENSMMNG00015005457) #10	ENSMMNG00015005553	GADD45GIP1 (ENSMMNG00015005584) #11	RAD23A (ENSMMNG00015004840) #12	ENSMMNG00015004845 #13	FARSA (ENSMMNG00015004851) #14	SYCE2 (ENSMMNG00015004858) #15	GCDH (ENSMMNG00015004861) #17	KLF1 (ENSMMNG00015004865) #16	DNASE2 (ENSMMNG00015004869) #18	MAST1 (ENSMMNG00015004880) #19	RTBDN (ENSMMNG00015004901) #20	RNASEH2A (ENSMMNG00015004907) #21	THSD8 (ENSMMNG00015004915)	PRDX2 (ENSMMNG00015004919) #22	JUNB (ENSMMNG00015004931) #23	HOOK2 (ENSMMNG00015004937) #24	BEST2 (ENSMMNG00015004949) #25	GET3 (ENSMMNG00015004960) #26	TRIR (ENSMMNG00015004970) #27	TNPO2 (ENSMMNG00015004980) #28	FBXW9 (ENSMMNG00015005000) #29	ENSMMNG00015005005	DHPS (ENSMMNG00015005018) #30	WDR83 (ENSMMNG00015005037) #31	WDR83OS (ENSMMNG00015005049) #32	MAN2B1 (ENSMMNG00015005071) #33	ENSMMNG00015005109	ENSMMNG00015005113 ##34	ENSMMNG00015005127 #34
Vaquita	MODERN SPECIES	14	NACC1 (ENSPSNG00000005645) #7	TRMT1 (ENSPSNG00000005699) #8	LYL1 (ENSPSNG00000005801) #9	NFIX (ENSPSNG00000005985) #10	ENSPSNG00000006174	GADD45GIP1 (ENSPSNG00000006226) #11	RAD23A (ENSPSNG00000006274) #12	CALR (ENSPSNG00000006361) #13	FARSA (ENSPSNG00000006551) #14	GCDH (ENSPSNG00000006697) #17	KLF1 (ENSPSNG00000006733) #16	DNASE2 (ENSPSNG00000006758) #18	MAST1 (ENSPSNG00000006815) #19	RTBDN (ENSPSNG00000007000) #20	RNASEH2A (ENSPSNG00000007087) #21	PRDX2 (ENSPSNG00000007156) #22	JUNB (ENSPSNG00000007194) #23	HOOK2 (ENSPSNG00000007235) #24	BEST2 (ENSPSNG00000007304) #25	TRIR (ENSPSNG00000007370) #27	TNPO2 (ENSPSNG00000007421) #28	FBXW9 (ENSPSNG00000000092) #29	ENSPSNG00000000122	DHPS (ENSPSNG00000000212) #30	WDR83OS (ENSPSNG00000000152) #32	WDR83 (ENSPSNG00000000274) #31	MAN2B1 (ENSPSNG00000000314) #33	ENSPSNG00000000399 #34	ENSPSNG00000000426 #35	ENSPSNG00000000476 ##34	ENSPSNG00000000493 #37
Dolphin	MODERN SPECIES	135					GADD45GIP1 (ENSTTRG00000003602) #11	RAD23A (ENSTTRG00000003601) #12	CALR (ENSTTRG00000003600) #13	FARSA (ENSTTRG00000003599) #14	SYCE2 (ENSTTRG00000003598) #15	GCDH (ENSTTRG00000003597) #17	KLF1 (ENSTTRG00000003596) #16	DNASE2 (ENSTTRG00000003595) #18	MAST1 (ENSTTRG00000003594) #19	RTBDN (ENSTTRG00000003593) #20	RNASEH2A (ENSTTRG00000003592) #21	PRDX2 (ENSTTRG00000003591) #22	JUNB (ENSTTRG00000003590) #23	HOOK2 (ENSTTRG00000003588) #24	BEST2 (ENSTTRG00000003586) #25
Sperm whale	MODERN SPECIES	26				GADD45GIP1 (ENSPCTG00005019623) #11	RAD23A (ENSPCTG00005019572) #12	CALR (ENSPCTG00005019546) #13	FARSA (ENSPCTG00005019481) #14	SYCE2 (ENSPCTG00005019462) #15	GCDH (ENSPCTG00005019424) #17	KLF1 (ENSPCTG00005019380) #16	DNASE2 (ENSPCTG00005019363) #18	MAST1 (ENSPCTG00005019033) #19	RTBDN (ENSPCTG00005018893) #20	RNASEH2A (ENSPCTG00005018850) #21	THSD8 (ENSPCTG00005018824)	PRDX2 (ENSPCTG00005018785) #22	JUNB (ENSPCTG00005018767) #23	HOOK2 (ENSPCTG00005018712) #24	BEST2 (ENSPCTG00005018605) #25	ASNA1 (ENSPCTG00005018458) #26	TRIR (ENSPCTG00005018441) #27	TNPO2 (ENSPCTG00005018339) #28	FBXW9 (ENSPCTG00005018271) #29	ENSPCTG00005018240	DHPS (ENSPCTG00005018077) #30	WDR83 (ENSPCTG00005018037) #31	WDR83OS (ENSPCTG00005017991) #32
Blue whale	MODERN SPECIES	14	TRMT1 (ENSBMSG00010006254) #8	LYL1 (ENSBMSG00010006239) #9	NFIX (ENSBMSG00010006215) #10	GADD45GIP1 (ENSBMSG00010006182) #11	RAD23A (ENSBMSG00010006168) #12	ENSBMSG00010006144 #13	FARSA (ENSBMSG00010006124) #14	ENSBMSG00010006111	GCDH (ENSBMSG00010006092) #17	KLF1 (ENSBMSG00010006067) #16	DNASE2 (ENSBMSG00010006057) #18	MAST1 (ENSBMSG00010006004) #19	RTBDN (ENSBMSG00010005967) #20	RNASEH2A (ENSBMSG00010005947) #21	THSD8 (ENSBMSG00010005934)	PRDX2 (ENSBMSG00010005921) #22	JUNB (ENSBMSG00010005909) #23	HOOK2 (ENSBMSG00010005872) #24	BEST2 (ENSBMSG00010005835) #25	GET3 (ENSBMSG00010005817) #26	TRIR (ENSBMSG00010005806) #27	TNPO2 (ENSBMSG00010005781) #28	FBXW9 (ENSBMSG00010005739) #29	ENSBMSG00010005715	DHPS (ENSBMSG00010005704) #30	WDR83 (ENSBMSG00010005695) #31	WDR83OS (ENSBMSG00010005684) #32	MAN2B1 (ENSBMSG00010005667) #33	ENSBMSG00010005656	ENSBMSG00010005651 #34	ENSBMSG00010005640 #34
Pecora	ANCESTRAL SPECIES		ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##34	ENSGT00440000039287
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000003891	ENSCHYG00000003881	ELF2 (ENSCHYG00000003820)	NOCT (ENSCHYG00000003790)	ENSCHYG00000003782	ENSCHYG00000003775	SLC7A11 (ENSCHYG00000003749)	ENSCHYG00000003723	PCDH18 (ENSCHYG00000003685)	ENSCHYG00000003660	ENSCHYG00000003650	ENSCHYG00000003641	PABPC4L (ENSCHYG00000003623)	ENSCHYG00000003606	PCDH10 (ENSCHYG00000003589)	ENSCHYG00000003572 #22	ENSCHYG00000003561	C4orf33 (ENSCHYG00000003546)	SCLT1 (ENSCHYG00000003454)	JADE1 (ENSCHYG00000003379)	PGRMC2 (ENSCHYG00000003351)	ENSCHYG00000003328	ENSCHYG00000003312	LARP1B (ENSCHYG00000003154)	ENSCHYG00000003101	ABHD18 (ENSCHYG00000003039)	MFSD8 (ENSCHYG00000002571)	PLK4 (ENSCHYG00000002235)	HSPA4L (ENSCHYG00000002146)	INTU (ENSCHYG00000001993)	FAT4 (ENSCHYG00000001903)
Yarkand deer	MODERN SPECIES	1323	NEXMIF (ENSCHYG00000013048)	ENSCHYG00000013033	ABCB7 (ENSCHYG00000012079)	UPRT (ENSCHYG00000011786)	ZDHHC15 (ENSCHYG00000011470)	MAGEE2 (ENSCHYG00000011410)	ENSCHYG00000011362	ENSCHYG00000011310	FGF16 (ENSCHYG00000011260)	ENSCHYG00000011219	ATRX (ENSCHYG00000011090)	MAGT1 (ENSCHYG00000010961)	ENSCHYG00000010895	ATP7A (ENSCHYG00000010379)	ENSCHYG00000010341	ENSCHYG00000010325 #22	ENSCHYG00000010187	TAF9B (ENSCHYG00000010082)	ENSCHYG00000009821	CYSLTR1 (ENSCHYG00000009807)	LPAR4 (ENSCHYG00000009794)	P2RY10 (ENSCHYG00000009753)	GPR174 (ENSCHYG00000009735)	ITM2A (ENSCHYG00000009688)	TBX22 (ENSCHYG00000009606)	ENSCHYG00000009550	TENT5D (ENSCHYG00000009524)	ENSCHYG00000009482	ENSCHYG00000009463	BRWD3 (ENSCHYG00000008984)	ENSCHYG00000008921
Yarkand deer	MODERN SPECIES	32	STX10 (ENSCHYG00000015356)	NACC1 (ENSCHYG00000015883) #7	TRMT1 (ENSCHYG00000016033) #8	LYL1 (ENSCHYG00000016421) #9	NFIX (ENSCHYG00000016512) #10	GADD45GIP1 (ENSCHYG00000017788) #11	ENSCHYG00000017855 #13	FARSA (ENSCHYG00000018361) #14	GCDH (ENSCHYG00000018661) #17	KLF1 (ENSCHYG00000019002) #16	DNASE2 (ENSCHYG00000019086) #18	MAST1 (ENSCHYG00000019171) #19	ENSCHYG00000019426	RTBDN (ENSCHYG00000019447) #20	RNASEH2A (ENSCHYG00000019565) #21	ENSCHYG00000019679 #22	JUNB (ENSCHYG00000019794) #23	HOOK2 (ENSCHYG00000019849) #24	BEST2 (ENSCHYG00000020079) #25	ENSCHYG00000020173 #26	TRIR (ENSCHYG00000020314) #27	TNPO2 (ENSCHYG00000020399) #28	FBXW9 (ENSCHYG00000020520) #29	ENSCHYG00000020822	DHPS (ENSCHYG00000020871) #30	WDR83 (ENSCHYG00000021020) #31	ENSCHYG00000021159 #32	MAN2B1 (ENSCHYG00000021233) #33	ENSCHYG00000021342	ENSCHYG00000021396 ##34	ENSCHYG00000021432
Percora_a	ANCESTRAL SPECIES		ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##34	ENSGT00440000039287
Bovidae	ANCESTRAL SPECIES		ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.b ##34	ENSGT00440000039287
Bovinae	ANCESTRAL SPECIES	2	ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.b ##34	ENSGT00440000039287
American bison	MODERN SPECIES	3279	TRMT1 (ENSBBBG00000019284) #8	LYL1 (ENSBBBG00000019215) #9	NFIX (ENSBBBG00000019204) #10	ENSBBBG00000008167 #11	RAD23A (ENSBBBG00000019119) #12	CALR (ENSBBBG00000004880) #13	FARSA (ENSBBBG00000019049) #14	SYCE2 (ENSBBBG00000004849) #15	GCDH (ENSBBBG00000004838) #17	KLF1 (ENSBBBG00000004825) #16	DNASE2 (ENSBBBG00000018969) #18	MAST1 (ENSBBBG00000018956) #19	RTBDN (ENSBBBG00000018793) #20	RNASEH2A (ENSBBBG00000018775) #21	THSD8 (ENSBBBG00000018770)	PRDX2 (ENSBBBG00000008767) #22	HOOK2 (ENSBBBG00000009147) #24	BEST2 (ENSBBBG00000018649) #25	GET3 (ENSBBBG00000004626) #26	ENSBBBG00000018618	TNPO2 (ENSBBBG00000018607) #28	FBXW9 (ENSBBBG00000018508) #29	ENSBBBG00000018499	DHPS (ENSBBBG00000004547) #30	WDR83 (ENSBBBG00000018478) #31	WDR83OS (ENSBBBG00000004534) #32	MAN2B1 (ENSBBBG00000018459) #33	ENSBBBG00000018419 #34	ENSBBBG00000018415 #37	ENSBBBG00000018390	ENSBBBG00000018386 ##34
Bos	ANCESTRAL SPECIES	3	ENSGT00530000063646.b.r #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.b ##34	ENSGT00440000039287
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000159327 #7	ENSGT00530000063646.b.r #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.b ##34	ENSGT00440000039287
Cow	MODERN SPECIES	26	NACC1 (ENSBTAG00000016350) #7	TRMT1 (ENSBTAG00000019325) #8	LYL1 (ENSBTAG00000019329) #9	NFIX (ENSBTAG00000018229) #10	GADD45GIP1 (ENSBTAG00000015117) #11	RAD23A (ENSBTAG00000015116) #12	CALR (ENSBTAG00000015114) #13	FARSA (ENSBTAG00000021374) #14	SYCE2 (ENSBTAG00000016213) #15	GCDH (ENSBTAG00000016211) #17	KLF1 (ENSBTAG00000006083) #16	DNASE2 (ENSBTAG00000006082) #18	MAST1 (ENSBTAG00000006080) #19	RTBDN (ENSBTAG00000006077) #20	RNASEH2A (ENSBTAG00000009661) #21	PRDX2 (ENSBTAG00000012062) #22	JUNB (ENSBTAG00000012046) #23	HOOK2 (ENSBTAG00000008654) #24	BEST2 (ENSBTAG00000025652) #25	GET3 (ENSBTAG00000011837) #26	TRIR (ENSBTAG00000011825) #27	TNPO2 (ENSBTAG00000011811) #28	FBXW9 (ENSBTAG00000020924) #29	GNG14 (ENSBTAG00000006251)	DHPS (ENSBTAG00000006247) #30	WDR83 (ENSBTAG00000006245) #31	WDR83OS (ENSBTAG00000006244) #32	MAN2B1 (ENSBTAG00000006241) #33	ENSBTAG00000016721 #34	ENSBTAG00000049339 ##34	ENSBTAG00000055295
Hybrid Bos Indicus	MODERN SPECIES	26	TRMT1 (ENSBIXG00005022272) #8	LYL1 (ENSBIXG00005003796) #9	NACC1 (ENSBIXG00005003906) #7	GADD45GIP1 (ENSBIXG00005022995) #11	RAD23A (ENSBIXG00005023035) #12	CALR (ENSBIXG00005023092) #13	FARSA (ENSBIXG00005023164) #14	ENSBIXG00005023188 #15	GCDH (ENSBIXG00005006673) #17	KLF1 (ENSBIXG00005006052) #16	DNASE2 (ENSBIXG00005023267) #18	MAST1 (ENSBIXG00005023334) #19	RTBDN (ENSBIXG00005007174) #20	RNASEH2A (ENSBIXG00005023406) #21	JUNB (ENSBIXG00005023431) #23	PRDX2 (ENSBIXG00005004022) #22	HOOK2 (ENSBIXG00005023624) #24	BEST2 (ENSBIXG00005004058) #25	GET3 (ENSBIXG00005023763) #26	TNPO2 (ENSBIXG00005024052) #28	ENSBIXG00005024114	FBXW9 (ENSBIXG00005024191) #29	DHPS (ENSBIXG00005024243) #30	WDR83 (ENSBIXG00005004147) #31	WDR83OS (ENSBIXG00005024294) #32	MAN2B1 (ENSBIXG00005024343) #33	ENSBIXG00005024372 #34	ENSBIXG00005004163	ENSBIXG00005024398 #35	ENSBIXG00005004175	ENSBIXG00005024470
Bos_a	ANCESTRAL SPECIES	57	ENSGT00530000063646.b.r #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34	ENSGT00950000182755.b.a.b ##34	ENSGT00440000039287
Wild yak	MODERN SPECIES	1191	TRMT1 (ENSBMUG00000015157) #8	LYL1 (ENSBMUG00000015125) #9	NFIX (ENSBMUG00000015081) #10	GADD45GIP1 (ENSBMUG00000015011) #11	RAD23A (ENSBMUG00000014991) #12	CALR (ENSBMUG00000014947) #13	FARSA (ENSBMUG00000014925) #14	SYCE2 (ENSBMUG00000014874) #15	GCDH (ENSBMUG00000014853) #17	KLF1 (ENSBMUG00000014835) #16	DNASE2 (ENSBMUG00000014821) #18	MAST1 (ENSBMUG00000014789) #19	RTBDN (ENSBMUG00000014745) #20	RNASEH2A (ENSBMUG00000014723) #21	THSD8 (ENSBMUG00000014710)	PRDX2 (ENSBMUG00000014704) #22	HOOK2 (ENSBMUG00000014550) #24	BEST2 (ENSBMUG00000014141) #25	ASNA1 (ENSBMUG00000014104) #26	TRIR (ENSBMUG00000014082) #27	TNPO2 (ENSBMUG00000013142) #28	FBXW9 (ENSBMUG00000012328) #29	ENSBMUG00000012320	DHPS (ENSBMUG00000012304) #30	WDR83 (ENSBMUG00000012287) #31	WDR83OS (ENSBMUG00000012262) #32	MAN2B1 (ENSBMUG00000012248) #33	ENSBMUG00000012228 ##34	ENSBMUG00000012181 #35	ENSBMUG00000012138	ENSBMUG00000012125
Domestic yak	MODERN SPECIES	27	TRMT1 (ENSBGRG00000008629) #8	LYL1 (ENSBGRG00000008585) #9	NFIX (ENSBGRG00000007656) #10	GADD45GIP1 (ENSBGRG00000007568) #11	RAD23A (ENSBGRG00000007230) #12	CALR (ENSBGRG00000007159) #13	FARSA (ENSBGRG00000006949) #14	SYCE2 (ENSBGRG00000006880) #15	GCDH (ENSBGRG00000006775) #17	KLF1 (ENSBGRG00000006745) #16	DNASE2 (ENSBGRG00000006722) #18	MAST1 (ENSBGRG00000006558) #19	RTBDN (ENSBGRG00000006406) #20	RNASEH2A (ENSBGRG00000006330) #21	THSD8 (ENSBGRG00000006299)	PRDX2 (ENSBGRG00000006234) #22	JUNB (ENSBGRG00000006220) #23	HOOK2 (ENSBGRG00000005838) #24	BEST2 (ENSBGRG00000005756) #25	GET3 (ENSBGRG00000005656) #26	TRIR (ENSBGRG00000005621) #27	TNPO2 (ENSBGRG00000005497) #28	FBXW9 (ENSBGRG00000005389) #29	ENSBGRG00000005368	DHPS (ENSBGRG00000005293) #30	WDR83 (ENSBGRG00000005260) #31	WDR83OS (ENSBGRG00000005213) #32	MAN2B1 (ENSBGRG00000005041) #33	ENSBGRG00000005014	ENSBGRG00000004914 #34	ENSBGRG00000004802
Caprinae	ANCESTRAL SPECIES	3	ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00940000156532.l	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.b.i #35
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	2	ACACA (ENSOARG00020023744)	ENSOARG00020024324	AATF (ENSOARG00020024358)	ENSOARG00020024441	LHX1 (ENSOARG00020024449)	MRM1 (ENSOARG00020024467)	GGNBP2 (ENSOARG00020024497)	PIGW (ENSOARG00020024630)	MYO19 (ENSOARG00020024654)	ZNHIT3 (ENSOARG00020024765)	CA4 (ENSOARG00020024778)	ENSOARG00020024810	ENSOARG00020024981	CHCT1 (ENSOARG00020009988)	APPBP2 (ENSOARG00020010094)	ENSOARG00020010189 #22	PPM1D (ENSOARG00020010254)	BCAS3 (ENSOARG00020010530)	TBX2 (ENSOARG00020011127)	TBX4 (ENSOARG00020011171)	ENSOARG00020011344	BRIP1 (ENSOARG00020011382)	ENSOARG00020011548	INTS2 (ENSOARG00020011586)	MED13 (ENSOARG00020011969)	RNFT1 (ENSOARG00020012186)	RPS6KB1 (ENSOARG00020012243)	TUBD1 (ENSOARG00020012492)	ENSOARG00020012920	VMP1 (ENSOARG00020012971)	PTRH2 (ENSOARG00020013039)
Rambouillet Sheep	MODERN SPECIES	21	NACC1 (ENSOARG00020008294) #7	TRMT1 (ENSOARG00020008381) #8	LYL1 (ENSOARG00020008580) #9	NFIX (ENSOARG00020008684) #10	GADD45GIP1 (ENSOARG00020009801) #11	RAD23A (ENSOARG00020009840) #12	CALR (ENSOARG00020009931) #13	FARSA (ENSOARG00020010040) #14	GCDH (ENSOARG00020010253) #17	KLF1 (ENSOARG00020010329) #16	DNASE2 (ENSOARG00020010363) #18	MAST1 (ENSOARG00020010455) #19	RTBDN (ENSOARG00020011079) #20	RNASEH2A (ENSOARG00020011239) #21	THSD8 (ENSOARG00020011281)	PRDX2 (ENSOARG00020011331) #22	JUNB (ENSOARG00020011427) #23	BEST2 (ENSOARG00020011833) #25	ASNA1 (ENSOARG00020011930) #26	TRIR (ENSOARG00020012000) #27	TNPO2 (ENSOARG00020012156) #28	FBXW9 (ENSOARG00020012297) #29	ENSOARG00020012653	DHPS (ENSOARG00020012703) #30	WDR83 (ENSOARG00020012835) #31	WDR83OS (ENSOARG00020012900) #32	MAN2B1 (ENSOARG00020012993) #33	ENSOARG00020013719	ENSOARG00020000232	ENSOARG00020000407 ##34	ENSOARG00020000419 ##34
Goat	DUPLICATION
Goat	MODERN SPECIES	10	ENSCHIG00000019766	C17orf78 (ENSCHIG00000025907)	ACACA (ENSCHIG00000014642)	AATF (ENSCHIG00000010438)	LHX1 (ENSCHIG00000022067)	MRM1 (ENSCHIG00000008558)	DHRS11 (ENSCHIG00000014977)	GGNBP2 (ENSCHIG00000018194)	PIGW (ENSCHIG00000013107)	MYO19 (ENSCHIG00000025193)	ENSCHIG00000015170	CA4 (ENSCHIG00000026507)	ENSCHIG00000019250	CHCT1 (ENSCHIG00000012925)	APPBP2 (ENSCHIG00000027119)	ENSCHIG00000017975 #22	PPM1D (ENSCHIG00000023763)	BCAS3 (ENSCHIG00000015855)	TBX2 (ENSCHIG00000014418)	TBX4 (ENSCHIG00000020604)	ENSCHIG00000023949	BRIP1 (ENSCHIG00000015958)	INTS2 (ENSCHIG00000025276)	MED13 (ENSCHIG00000022580)	ENSCHIG00000019101	RPS6KB1 (ENSCHIG00000005906)	TUBD1 (ENSCHIG00000017656)	VMP1 (ENSCHIG00000026133)	PTRH2 (ENSCHIG00000010059)	CLTC (ENSCHIG00000025765)	DHX40 (ENSCHIG00000016173)
Goat	MODERN SPECIES	26	NACC1 (ENSCHIG00000023771) #7	TRMT1 (ENSCHIG00000013569) #8	LYL1 (ENSCHIG00000027128) #9	NFIX (ENSCHIG00000022384) #10	GADD45GIP1 (ENSCHIG00000017823) #11	RAD23A (ENSCHIG00000017626) #12	CALR (ENSCHIG00000023446) #13	FARSA (ENSCHIG00000022617) #14	SYCE2 (ENSCHIG00000023183) #15	GCDH (ENSCHIG00000008032) #17	KLF1 (ENSCHIG00000024201) #16	DNASE2 (ENSCHIG00000018237) #18	MAST1 (ENSCHIG00000012078) #19	RTBDN (ENSCHIG00000018795) #20	RNASEH2A (ENSCHIG00000014460) #21	ENSCHIG00000008839 #22	JUNB (ENSCHIG00000007846) #23	HOOK2 (ENSCHIG00000017730) #24	BEST2 (ENSCHIG00000009210) #25	GET3 (ENSCHIG00000023078) #26	TRIR (ENSCHIG00000017848) #27	TNPO2 (ENSCHIG00000011718) #28	FBXW9 (ENSCHIG00000027225) #29	ENSCHIG00000018933	DHPS (ENSCHIG00000011017) #30	WDR83 (ENSCHIG00000025793) #31	WDR83OS (ENSCHIG00000020903) #32	MAN2B1 (ENSCHIG00000001921) #33	ENSCHIG00000016295	ENSCHIG00000019636	ENSCHIG00000008992 #34
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1135	ENSMMSG00000010886	ENSMMSG00000010857	ACACA (ENSMMSG00000009380)	AATF (ENSMMSG00000009137)	LHX1 (ENSMMSG00000009094)	MRM1 (ENSMMSG00000009048)	DHRS11 (ENSMMSG00000009003)	GGNBP2 (ENSMMSG00000008896)	PIGW (ENSMMSG00000008870)	MYO19 (ENSMMSG00000008719)	ZNHIT3 (ENSMMSG00000008678)	CA4 (ENSMMSG00000008660)	ENSMMSG00000008476	CHCT1 (ENSMMSG00000008435)	APPBP2 (ENSMMSG00000008396)	ENSMMSG00000008344 #22	PPM1D (ENSMMSG00000008295)	BCAS3 (ENSMMSG00000008066)	TBX2 (ENSMMSG00000007917)	TBX4 (ENSMMSG00000018587)	ENSMMSG00000018558	BRIP1 (ENSMMSG00000018426)	INTS2 (ENSMMSG00000018213)	MED13 (ENSMMSG00000018082)	ENSMMSG00000018037	ENSMMSG00000017945	RNFT1 (ENSMMSG00000017906)	RPS6KB1 (ENSMMSG00000017714)	TUBD1 (ENSMMSG00000017458)	VMP1 (ENSMMSG00000017374)	PTRH2 (ENSMMSG00000017362)
Siberian musk deer	MODERN SPECIES	34	TRMT1 (ENSMMSG00000018011) #8	LYL1 (ENSMMSG00000017977) #9	NFIX (ENSMMSG00000017773) #10	GADD45GIP1 (ENSMMSG00000017735) #11	RAD23A (ENSMMSG00000017530) #12	ENSMMSG00000017464 #13	FARSA (ENSMMSG00000017435) #14	SYCE2 (ENSMMSG00000017412) #15	GCDH (ENSMMSG00000017382) #17	KLF1 (ENSMMSG00000017358) #16	DNASE2 (ENSMMSG00000017335) #18	MAST1 (ENSMMSG00000017118) #19	RTBDN (ENSMMSG00000017054) #20	RNASEH2A (ENSMMSG00000017025) #21	THSD8 (ENSMMSG00000017010)	ENSMMSG00000016984 #22	JUNB (ENSMMSG00000016968) #23	HOOK2 (ENSMMSG00000016914) #24	BEST2 (ENSMMSG00000016855) #25	GET3 (ENSMMSG00000016786) #26	TRIR (ENSMMSG00000016742) #27	TNPO2 (ENSMMSG00000016676) #28	FBXW9 (ENSMMSG00000016611) #29	ENSMMSG00000016585	DHPS (ENSMMSG00000016482) #30	WDR83 (ENSMMSG00000016414) #31	ENSMMSG00000016351 #32	MAN2B1 (ENSMMSG00000016295) #33	ENSMMSG00000016218 #34	ENSMMSG00000016203 ##34	ENSMMSG00000016189
Camelidae	ANCESTRAL SPECIES	69	ENSGT00940000159327 #7	ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00440000039287	ENSGT00940000163044
Arabian camel	MODERN SPECIES	14	TRMT1 (ENSCDRG00005022165) #8	LYL1 (ENSCDRG00005022168) #9	NFIX (ENSCDRG00005022174) #10	ENSCDRG00005022176	GADD45GIP1 (ENSCDRG00005022178) #11	RAD23A (ENSCDRG00005022180) #12	CALR (ENSCDRG00005022183) #13	FARSA (ENSCDRG00005022184) #14	GCDH (ENSCDRG00005022187) #17	KLF1 (ENSCDRG00005022188) #16	DNASE2 (ENSCDRG00005022189) #18	MAST1 (ENSCDRG00005022190) #19	RTBDN (ENSCDRG00005022192) #20	RNASEH2A (ENSCDRG00005022193) #21	THSD8 (ENSCDRG00005022194)	PRDX2 (ENSCDRG00005022195) #22	JUNB (ENSCDRG00005022198) #23	HOOK2 (ENSCDRG00005022199) #24	BEST2 (ENSCDRG00005022200) #25	ASNA1 (ENSCDRG00005022202) #26	TRIR (ENSCDRG00005022203) #27	TNPO2 (ENSCDRG00005022205) #28	FBXW9 (ENSCDRG00005022210) #29	ENSCDRG00005022213	DHPS (ENSCDRG00005022217) #30	WDR83 (ENSCDRG00005022223) #31	WDR83OS (ENSCDRG00005022225) #32	MAN2B1 (ENSCDRG00005022226) #33	ENSCDRG00005022228 #34	ENSCDRG00005022231 ##34	ENSCDRG00005022234 ##34
Alpaca	MODERN SPECIES	1784																ENSVPAG00000003260 #22
Suina	ANCESTRAL SPECIES	16	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00860000135639	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.b ##34	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.b.i #35
Pig	DUPLICATION
Pig	MODERN SPECIES		ENSSSCG00000057761	ENSSSCG00000031194	TBX18 (ENSSSCG00000004290)	CEP162 (ENSSSCG00000004289)	MRAP2 (ENSSSCG00000026943)	CYB5R4 (ENSSSCG00000022994)	ENSSSCG00000004287	OOEP (ENSSSCG00000004285)	ENSSSCG00000058051	DPPA5 (ENSSSCG00000004283)	ENSSSCG00000053554	ENSSSCG00000046325	KCNQ5 (ENSSSCG00000004281)	RIMS1 (ENSSSCG00000004280)	OGFRL1 (ENSSSCG00000004279)	ENSSSCG00000058784 #22	B3GAT2 (ENSSSCG00000026246)	SMAP1 (ENSSSCG00000004276)	SDHAF4 (ENSSSCG00000051834)	FAM135A (ENSSSCG00000004275)	COL9A1 (ENSSSCG00000004274)	COL19A1 (ENSSSCG00000044472)	ENSSSCG00000061940	LMBRD1 (ENSSSCG00000004272)	ADGRB3 (ENSSSCG00000004270)	ENSSSCG00000004269	PHF3 (ENSSSCG00000035259)	PTP4A1 (ENSSSCG00000025941)	ENSSSCG00000032533	RSPH4A (ENSSSCG00000023834)	ZUP1 (ENSSSCG00000004263)
Pig	MODERN SPECIES	10	TRMT1 (ENSSSCG00000013744) #8	LYL1 (ENSSSCG00000024549) #9	NFIX (ENSSSCG00000013742) #10	ENSSSCG00000048273	RAD23A (ENSSSCG00000013747) #12	GADD45GIP1 (ENSSSCG00000034859) #11	CALR (ENSSSCG00000013746) #13	FARSA (ENSSSCG00000013745) #14	SYCE2 (ENSSSCG00000013740) #15	GCDH (ENSSSCG00000013729) #17	KLF1 (ENSSSCG00000013730) #16	DNASE2 (ENSSSCG00000013731) #18	MAST1 (ENSSSCG00000013732) #19	RTBDN (ENSSSCG00000033304) #20	RNASEH2A (ENSSSCG00000013737) #21	PRDX2 (ENSSSCG00000013736) #22	JUNB (ENSSSCG00000013735) #23	HOOK2 (ENSSSCG00000013734) #24	BEST2 (ENSSSCG00000013733) #25	GET3 (ENSSSCG00000038776) #26	TRIR (ENSSSCG00000013727) #27	TNPO2 (ENSSSCG00000013726) #28	FBXW9 (ENSSSCG00000013725) #29	ENSSSCG00000052605	DHPS (ENSSSCG00000013723) #30	WDR83 (ENSSSCG00000013722) #31	WDR83OS (ENSSSCG00000013721) #32	MAN2B1 (ENSSSCG00000013720) #33	ENSSSCG00000029347 #34	ENSSSCG00000046939	ENSSSCG00000033388 #35
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	59	SYNCRIP (ENSCWAG00000010209)	SNX14 (ENSCWAG00000009680)	NT5E (ENSCWAG00000009378)	TBX18 (ENSCWAG00000009292)	CEP162 (ENSCWAG00000009113)	MRAP2 (ENSCWAG00000009069)	CYB5R4 (ENSCWAG00000008870)	DDX43 (ENSCWAG00000008720)	ENSCWAG00000008652	DPPA5 (ENSCWAG00000008587)	ENSCWAG00000008542	KCNQ5 (ENSCWAG00000006051)	ENSCWAG00000005944	RIMS1 (ENSCWAG00000001044)	OGFRL1 (ENSCWAG00000000668)	ENSCWAG00000000657 #22	B3GAT2 (ENSCWAG00000000640)	SMAP1 (ENSCWAG00000000558)	SDHAF4 (ENSCWAG00000000537)	FAM135A (ENSCWAG00000000436)	COL9A1 (ENSCWAG00000000201)	COL19A1 (ENSCWAG00000000048)	LMBRD1 (ENSCWAG00000008700)	ADGRB3 (ENSCWAG00000008282)	ENSCWAG00000008197
Chacoan peccary	MODERN SPECIES	769	TRMT1 (ENSCWAG00000001026) #8	LYL1 (ENSCWAG00000001006) #9	NFIX (ENSCWAG00000000950) #10	GADD45GIP1 (ENSCWAG00000000909) #11	RAD23A (ENSCWAG00000000887) #12	CALR (ENSCWAG00000000858) #13	FARSA (ENSCWAG00000000829) #14	SYCE2 (ENSCWAG00000000797) #15	GCDH (ENSCWAG00000000760) #17	KLF1 (ENSCWAG00000000736) #16	DNASE2 (ENSCWAG00000000717) #18	MAST1 (ENSCWAG00000000559) #19	RTBDN (ENSCWAG00000000515) #20	RNASEH2A (ENSCWAG00000000486) #21	THSD8 (ENSCWAG00000000470)	ENSCWAG00000000453 #22	JUNB (ENSCWAG00000000438) #23
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.b ##34	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.b.i #35
Carnivora	ANCESTRAL SPECIES	6	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Cat	MODERN SPECIES	1	TRMT1 (ENSFCAG00000000483) #8	ENSFCAG00000000482 #9	NFIX (ENSFCAG00000000481) #10	DAND5 (ENSFCAG00000043469)	GADD45GIP1 (ENSFCAG00000034587) #11	RAD23A (ENSFCAG00000023315) #12	CALR (ENSFCAG00000000479) #13	FARSA (ENSFCAG00000023511) #14	GCDH (ENSFCAG00000000477) #17	KLF1 (ENSFCAG00000026066) #16	DNASE2 (ENSFCAG00000000476) #18	MAST1 (ENSFCAG00000000475) #19	RTBDN (ENSFCAG00000009941) #20	RNASEH2A (ENSFCAG00000000474) #21	THSD8 (ENSFCAG00000052414)	PRDX2 (ENSFCAG00000000473) #22	JUNB (ENSFCAG00000022803) #23	HOOK2 (ENSFCAG00000028846) #24	BEST2 (ENSFCAG00000000470) #25	GET3 (ENSFCAG00000000468) #26	TRIR (ENSFCAG00000032147) #27	TNPO2 (ENSFCAG00000000467) #28	FBXW9 (ENSFCAG00000000466) #29	GNG14 (ENSFCAG00000021887)	DHPS (ENSFCAG00000000465) #30	WDR83 (ENSFCAG00000037204) #31	WDR83OS (ENSFCAG00000000463) #32	MAN2B1 (ENSFCAG00000029528) #33	ENSFCAG00000053819 ##34	ENSFCAG00000040256 ##34	ENSFCAG00000039394 ##34
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Tiger	MODERN SPECIES	580	TRMT1 (ENSPTIG00000008833) #8	NFIX (ENSPTIG00000009075) #10	DAND5 (ENSPTIG00000010336)	ENSPTIG00000010514 #11	RAD23A (ENSPTIG00000010565) #12	CALR (ENSPTIG00000011152) #13	FARSA (ENSPTIG00000011502) #14	SYCE2 (ENSPTIG00000011935) #15	GCDH (ENSPTIG00000012466) #17	ENSPTIG00000012710 #16	DNASE2 (ENSPTIG00000012774) #18	ENSPTIG00000012815 #19	RTBDN (ENSPTIG00000013220) #20	RNASEH2A (ENSPTIG00000013366) #21	THSD8 (ENSPTIG00000013637)	PRDX2 (ENSPTIG00000013677) #22	HOOK2 (ENSPTIG00000013806) #24	BEST2 (ENSPTIG00000014298) #25	GET3 (ENSPTIG00000014699) #26
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
lion	MODERN SPECIES	2	LYL1 (ENSPLOG00000016418) #9	NFIX (ENSPLOG00000016031) #10	DAND5 (ENSPLOG00000015976)	GADD45GIP1 (ENSPLOG00000015943) #11	RAD23A (ENSPLOG00000015869) #12	CALR (ENSPLOG00000015775) #13	FARSA (ENSPLOG00000015558) #14	SYCE2 (ENSPLOG00000015466) #15	GCDH (ENSPLOG00000015264) #17	KLF1 (ENSPLOG00000015199) #16	DNASE2 (ENSPLOG00000015142) #18	MAST1 (ENSPLOG00000014769) #19	RTBDN (ENSPLOG00000014688) #20	RNASEH2A (ENSPLOG00000014659) #21	THSD8 (ENSPLOG00000014622)	PRDX2 (ENSPLOG00000014517) #22	JUNB (ENSPLOG00000014495) #23	HOOK2 (ENSPLOG00000014055) #24	BEST2 (ENSPLOG00000013919) #25	GET3 (ENSPLOG00000013778) #26	TRIR (ENSPLOG00000013712) #27	TNPO2 (ENSPLOG00000013652) #28	FBXW9 (ENSPLOG00000013556) #29	ENSPLOG00000013520	DHPS (ENSPLOG00000013447) #30	WDR83 (ENSPLOG00000013379) #31	WDR83OS (ENSPLOG00000013336) #32	MAN2B1 (ENSPLOG00000013282) #33	ENSPLOG00000013176 ##34	ENSPLOG00000013164 ##34	ENSPLOG00000013151 #37
leopard	DUPLICATION
leopard	MODERN SPECIES	47												ENSPPRG00000018692	ENSPPRG00000018969	KCNT2 (ENSPPRG00000018540)	ENSPPRG00000017753	ENSPPRG00000017595 #22	ENSPPRG00000018952	CDC73 (ENSPPRG00000017525)	B3GALT2 (ENSPPRG00000018936)	GLRX2 (ENSPPRG00000017310)	RO60 (ENSPPRG00000017233)	UCHL5 (ENSPPRG00000016476)	RGS2 (ENSPPRG00000015858)	RGS13 (ENSPPRG00000015829)	RGS1 (ENSPPRG00000015667)	RGS21 (ENSPPRG00000015463)	RGS18 (ENSPPRG00000015245)	BRINP3 (ENSPPRG00000015190)	ENSPPRG00000018908	ENSPPRG00000015159	KCTD3 (ENSPPRG00000014964)
leopard	MODERN SPECIES	110	LYL1 (ENSPPRG00000008858) #9	NFIX (ENSPPRG00000007036) #10	DAND5 (ENSPPRG00000002664)	GADD45GIP1 (ENSPPRG00000002575) #11	RAD23A (ENSPPRG00000002419) #12	CALR (ENSPPRG00000000511) #13	FARSA (ENSPPRG00000000346) #14	SYCE2 (ENSPPRG00000021729) #15	GCDH (ENSPPRG00000020586) #17	KLF1 (ENSPPRG00000016685) #16	DNASE2 (ENSPPRG00000015132) #18	MAST1 (ENSPPRG00000014214) #19	RTBDN (ENSPPRG00000013084) #20	THSD8 (ENSPPRG00000011424)	RNASEH2A (ENSPPRG00000010585) #21	PRDX2 (ENSPPRG00000010246) #22	JUNB (ENSPPRG00000020564) #23	ENSPPRG00000009177	HOOK2 (ENSPPRG00000009042) #24	BEST2 (ENSPPRG00000006013) #25	GET3 (ENSPPRG00000004506) #26	TRIR (ENSPPRG00000003329) #27	TNPO2 (ENSPPRG00000003075) #28	FBXW9 (ENSPPRG00000023858) #29	ENSPPRG00000020820	DHPS (ENSPPRG00000019899) #30	WDR83 (ENSPPRG00000014810) #31	WDR83OS (ENSPPRG00000014585) #32	MAN2B1 (ENSPPRG00000013970) #33	ENSPPRG00000011201 #34	ENSPPRG00000010737 ##34
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195.d #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Mustelinae	ANCESTRAL SPECIES	45	ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195.d #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Ferret	MODERN SPECIES	185	NACC1 (ENSMPUG00000004203) #7	TRMT1 (ENSMPUG00000004210) #8	LYL1 (ENSMPUG00000004316) #9	NFIX (ENSMPUG00000004325) #10	GADD45GIP1 (ENSMPUG00000004344) #11	RAD23A (ENSMPUG00000004334) #12	CALR (ENSMPUG00000004348) #13	FARSA (ENSMPUG00000004400) #14	GCDH (ENSMPUG00000004518) #17	ENSMPUG00000004535 #15	KLF1 (ENSMPUG00000004544) #16	DNASE2 (ENSMPUG00000004550) #18	MAST1 (ENSMPUG00000004565) #19	RTBDN (ENSMPUG00000004582) #20	RNASEH2A (ENSMPUG00000004586) #21	PRDX2 (ENSMPUG00000004591) #22	JUNB (ENSMPUG00000018708) #23	HOOK2 (ENSMPUG00000004624) #24	GET3 (ENSMPUG00000004639) #26	TRIR (ENSMPUG00000004652) #27	TNPO2 (ENSMPUG00000004663) #28	FBXW9 (ENSMPUG00000004689) #29	ENSMPUG00000004759	DHPS (ENSMPUG00000004768) #30	WDR83 (ENSMPUG00000004831) #31	WDR83OS (ENSMPUG00000004837) #32	MAN2B1 (ENSMPUG00000004856) #33	ENSMPUG00000004877 #34	ENSMPUG00000004884 ##34	ENSMPUG00000004896 #37	ENSMPUG00000004901 #35
American mink	MODERN SPECIES	233	TRMT1 (ENSNVIG00000004121) #8	LYL1 (ENSNVIG00000004114) #9	NFIX (ENSNVIG00000004082) #10	DAND5 (ENSNVIG00000004073)	ENSNVIG00000004059 #11	RAD23A (ENSNVIG00000004028) #12	CALR (ENSNVIG00000004013) #13	FARSA (ENSNVIG00000003979) #14	SYCE2 (ENSNVIG00000003941) #15	GCDH (ENSNVIG00000003925) #17	KLF1 (ENSNVIG00000003918) #16	DNASE2 (ENSNVIG00000003902) #18	MAST1 (ENSNVIG00000003827) #19	RTBDN (ENSNVIG00000003814) #20	RNASEH2A (ENSNVIG00000003791) #21	PRDX2 (ENSNVIG00000003765) #22	JUNB (ENSNVIG00000003745) #23	HOOK2 (ENSNVIG00000003702) #24	BEST2 (ENSNVIG00000003651) #25	GET3 (ENSNVIG00000003624) #26	TRIR (ENSNVIG00000003597) #27	TNPO2 (ENSNVIG00000003442) #28	FBXW9 (ENSNVIG00000003405) #29	ENSNVIG00000003395	DHPS (ENSNVIG00000003322) #30	WDR83 (ENSNVIG00000003299) #31	WDR83OS (ENSNVIG00000003265) #32	MAN2B1 (ENSNVIG00000003244) #33	ENSNVIG00000003206 ##34	ENSNVIG00000003199 ##34	ENSNVIG00000003192 #37
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195.d #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.b ##34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Giant Panda	MODERN SPECIES	14	LYL1 (ENSAMEG00000026522) #9	ENSAMEG00000027765	ENSAMEG00000012569 #10	DAND5 (ENSAMEG00000012568)	GADD45GIP1 (ENSAMEG00000012565) #11	RAD23A (ENSAMEG00000012527) #12	ENSAMEG00000012487 #13	FARSA (ENSAMEG00000012446) #14	SYCE2 (ENSAMEG00000012442) #15	GCDH (ENSAMEG00000012411) #17	KLF1 (ENSAMEG00000027076) #16	DNASE2 (ENSAMEG00000012396) #18	MAST1 (ENSAMEG00000012351) #19	RTBDN (ENSAMEG00000012347) #20	RNASEH2A (ENSAMEG00000028673) #21	PRDX2 (ENSAMEG00000012307) #22	JUNB (ENSAMEG00000012298) #23	HOOK2 (ENSAMEG00000012234) #24	BEST2 (ENSAMEG00000012212) #25	GET3 (ENSAMEG00000012198) #26	TRIR (ENSAMEG00000012192) #27	TNPO2 (ENSAMEG00000012123) #28	FBXW9 (ENSAMEG00000012106) #29	ENSAMEG00000012105	DHPS (ENSAMEG00000012097) #30	WDR83 (ENSAMEG00000012090) #31	WDR83OS (ENSAMEG00000024064) #32	MAN2B1 (ENSAMEG00000012013) #33	ENSAMEG00000025321 ##34	ENSAMEG00000012006 ##34	ENSAMEG00000011689 #37
Ursus	ANCESTRAL SPECIES	91	ENSGT00940000159327 #7	ENSGT00530000063646.b #8	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195.c #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.b ##34
American black bear	DUPLICATION
American black bear	MODERN SPECIES	990																ENSUAMG00000027848 #22
American black bear	MODERN SPECIES	1490															RNASEH2A (ENSUAMG00000019593) #21	PRDX2 (ENSUAMG00000019605) #22	ENSUAMG00000019609 #23	HOOK2 (ENSUAMG00000019611) #24	BEST2 (ENSUAMG00000019615) #25	GET3 (ENSUAMG00000019617) #26	TRIR (ENSUAMG00000019618) #27	TNPO2 (ENSUAMG00000019621) #28	FBXW9 (ENSUAMG00000019625) #29	ENSUAMG00000019626	DHPS (ENSUAMG00000019627) #30	WDR83 (ENSUAMG00000019628) #31	WDR83OS (ENSUAMG00000019649) #32	MAN2B1 (ENSUAMG00000019650) #33	ENSUAMG00000019652 ##34
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	126																ENSUMAG00000020443 #22	CDC73 (ENSUMAG00000020453)	B3GALT2 (ENSUMAG00000020459)	GLRX2 (ENSUMAG00000020462)	RO60 (ENSUMAG00000020464)	UCHL5 (ENSUMAG00000020466)	RGS2 (ENSUMAG00000020471)	RGS13 (ENSUMAG00000020472)	RGS1 (ENSUMAG00000020474)	RGS21 (ENSUMAG00000020475)	RGS18 (ENSUMAG00000020481)	ENSUMAG00000020488	ENSUMAG00000020493	BRINP3 (ENSUMAG00000020497)	ENSUMAG00000020507	KCTD3 (ENSUMAG00000020509)
Polar bear	MODERN SPECIES	464	ENSUMAG00000006026 #7	TRMT1 (ENSUMAG00000006027) #8	LYL1 (ENSUMAG00000006035) #9	NFIX (ENSUMAG00000006053) #10	DAND5 (ENSUMAG00000006065)	ENSUMAG00000006067 #11	RAD23A (ENSUMAG00000006070) #12	CALR (ENSUMAG00000006097) #13	FARSA (ENSUMAG00000006110) #14	SYCE2 (ENSUMAG00000006118) #15	GCDH (ENSUMAG00000006134) #17	DNASE2 (ENSUMAG00000006143) #18	MAST1 (ENSUMAG00000006156) #19	RTBDN (ENSUMAG00000006251) #20	ENSUMAG00000006254 #21	PRDX2 (ENSUMAG00000006260) #22	HOOK2 (ENSUMAG00000006279) #24	ENSUMAG00000006424 #25	GET3 (ENSUMAG00000006429) #26	ENSUMAG00000006440 #27	TNPO2 (ENSUMAG00000006504) #28	FBXW9 (ENSUMAG00000007019) #29	DHPS (ENSUMAG00000007032) #30	WDR83 (ENSUMAG00000007054) #31	WDR83OS (ENSUMAG00000007153) #32	MAN2B1 (ENSUMAG00000007247) #33	ENSUMAG00000007577 #34
Canidae	ANCESTRAL SPECIES		ENSGT00940000162404.b #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00960000189551	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Red fox	MODERN SPECIES	182	LYL1 (ENSVVUG00000024174) #9	ENSVVUG00000024173	NFIX (ENSVVUG00000024169) #10	DAND5 (ENSVVUG00000024168)	GADD45GIP1 (ENSVVUG00000024166) #11	RAD23A (ENSVVUG00000024155) #12	CALR (ENSVVUG00000024147) #13	FARSA (ENSVVUG00000024145) #14	ENSVVUG00000024144 #15	GCDH (ENSVVUG00000024143) #17	KLF1 (ENSVVUG00000024142) #16	DNASE2 (ENSVVUG00000024141) #18	MAST1 (ENSVVUG00000024135) #19	RTBDN (ENSVVUG00000024134) #20	ENSVVUG00000024133	PRDX2 (ENSVVUG00000024132) #22	JUNB (ENSVVUG00000024130) #23	HOOK2 (ENSVVUG00000024128) #24	BEST2 (ENSVVUG00000024122) #25	ASNA1 (ENSVVUG00000024118) #26	TRIR (ENSVVUG00000024113) #27	TNPO2 (ENSVVUG00000023860) #28	FBXW9 (ENSVVUG00000023840) #29	GNG14 (ENSVVUG00000023838)	DHPS (ENSVVUG00000023833) #30	WDR83 (ENSVVUG00000023830) #31	WDR83OS (ENSVVUG00000023828) #32	MAN2B1 (ENSVVUG00000023820) #33	ENSVVUG00000023819 #34	ENSVVUG00000023817 ##34	ENSVVUG00000023816
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00530000063646.b #8	ENSGT00940000162404.b #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b ##34	ENSGT00950000182755.b.a.a.a.a.b #37
Dog	MODERN SPECIES	12	TRMT1 (ENSCAFG00845030492) #8	ENSCAFG00845030516 #9	NFIX (ENSCAFG00845030565) #10	DAND5 (ENSCAFG00845015107)	GADD45GIP1 (ENSCAFG00845015125) #11	RAD23A (ENSCAFG00845015161) #12	CALR (ENSCAFG00845015220) #13	FARSA (ENSCAFG00845015291) #14	SYCE2 (ENSCAFG00845015391) #15	GCDH (ENSCAFG00845015478) #17	KLF1 (ENSCAFG00845015569) #16	DNASE2 (ENSCAFG00845015604) #18	MAST1 (ENSCAFG00845015670) #19	RTBDN (ENSCAFG00845015774) #20	RNASEH2A (ENSCAFG00845015846) #21	PRDX2 (ENSCAFG00845015946) #22	JUNB (ENSCAFG00845015989) #23	HOOK2 (ENSCAFG00845016033) #24	BEST2 (ENSCAFG00845016163) #25	GET3 (ENSCAFG00845016222) #26	TRIR (ENSCAFG00845016276) #27	TNPO2 (ENSCAFG00845016346) #28	FBXW9 (ENSCAFG00845016738) #29	GNG14 (ENSCAFG00845016787)	DHPS (ENSCAFG00845016832) #30	WDR83 (ENSCAFG00845016879) #31	WDR83OS (ENSCAFG00845016928) #32	ENSCAFG00845017174 #33	ENSCAFG00845017657 #34	ENSCAFG00845017723 ##34	ENSCAFG00845017811
Dingo	MODERN SPECIES	112	TRMT1 (ENSCAFG00020005397) #8	LYL1 (ENSCAFG00020005371) #9	NFIX (ENSCAFG00020005352) #10	DAND5 (ENSCAFG00020005339)	GADD45GIP1 (ENSCAFG00020005337) #11	RAD23A (ENSCAFG00020005332) #12	CALR (ENSCAFG00020005320) #13	FARSA (ENSCAFG00020005315) #14	ENSCAFG00020005308 #15	GCDH (ENSCAFG00020005305) #17	KLF1 (ENSCAFG00020005300) #16	DNASE2 (ENSCAFG00020005295) #18	MAST1 (ENSCAFG00020005207) #19	RTBDN (ENSCAFG00020005198) #20	RNASEH2A (ENSCAFG00020005190) #21	PRDX2 (ENSCAFG00020005178) #22	JUNB (ENSCAFG00020005176) #23	HOOK2 (ENSCAFG00020005171) #24	BEST2 (ENSCAFG00020005167) #25	GET3 (ENSCAFG00020005145) #26	TRIR (ENSCAFG00020005142) #27	TNPO2 (ENSCAFG00020005115) #28	FBXW9 (ENSCAFG00020005110) #29	ENSCAFG00020005105	DHPS (ENSCAFG00020005102) #30	WDR83 (ENSCAFG00020005098) #31	WDR83OS (ENSCAFG00020005096) #32	MAN2B1 (ENSCAFG00020005086) #33	ENSCAFG00020005083 #34	ENSCAFG00020005082 ##34	ENSCAFG00020005065 #37
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00940000163881	ENSGT00950000183216.d.a.a.b.b
Chiroptera	ANCESTRAL SPECIES	60	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34
Megabat	MODERN SPECIES	292					GADD45GIP1 (ENSPVAG00000014719) #11	RAD23A (ENSPVAG00000014717) #12	CALR (ENSPVAG00000014715) #13	FARSA (ENSPVAG00000014714) #14	SYCE2 (ENSPVAG00000014713) #15	GCDH (ENSPVAG00000014712) #17	KLF1 (ENSPVAG00000014711) #16	DNASE2 (ENSPVAG00000014710) #18	MAST1 (ENSPVAG00000014707) #19	RTBDN (ENSPVAG00000014705) #20	RNASEH2A (ENSPVAG00000014703) #21	PRDX2 (ENSPVAG00000014702) #22	ENSPVAG00000014700 #24	BEST2 (ENSPVAG00000014699) #25	GET3 (ENSPVAG00000014698) #26	TRIR (ENSPVAG00000014697) #27
Microchiroptera	ANCESTRAL SPECIES	51	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00870000137755	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.b.b.a ##34
Microbat	MODERN SPECIES	1559	NACC1 (ENSMLUG00000003937) #7	TRMT1 (ENSMLUG00000012809) #8	LYL1 (ENSMLUG00000012805) #9	NFIX (ENSMLUG00000012794) #10	GADD45GIP1 (ENSMLUG00000012790) #11	RAD23A (ENSMLUG00000012783) #12	ENSMLUG00000012776	FARSA (ENSMLUG00000012767) #14	SYCE2 (ENSMLUG00000004284) #15	GCDH (ENSMLUG00000012753) #17	KLF1 (ENSMLUG00000012751) #16	DNASE2 (ENSMLUG00000023519) #18	MAST1 (ENSMLUG00000012736) #19	RTBDN (ENSMLUG00000012729) #20	RNASEH2A (ENSMLUG00000012723) #21	PRDX2 (ENSMLUG00000012718) #22	JUNB (ENSMLUG00000012714) #23	HOOK2 (ENSMLUG00000012699) #24	BEST2 (ENSMLUG00000029360) #25	GET3 (ENSMLUG00000012694) #26	TRIR (ENSMLUG00000012689) #27	TNPO2 (ENSMLUG00000012669) #28	FBXW9 (ENSMLUG00000012655) #29	ENSMLUG00000024606	DHPS (ENSMLUG00000012647) #30	WDR83 (ENSMLUG00000012637) #31	WDR83OS (ENSMLUG00000012633) #32
Greater horseshoe bat	MODERN SPECIES	9	ENSRFEG00010021172	DAND5 (ENSRFEG00010021178)	GADD45GIP1 (ENSRFEG00010021188) #11	RAD23A (ENSRFEG00010021198) #12	CALR (ENSRFEG00010021212) #13	FARSA (ENSRFEG00010021230) #14	SYCE2 (ENSRFEG00010021245) #15	GCDH (ENSRFEG00010021270) #17	KLF1 (ENSRFEG00010021300) #16	DNASE2 (ENSRFEG00010021305) #18	MAST1 (ENSRFEG00010021327) #19	RTBDN (ENSRFEG00010021362) #20	ENSRFEG00010021370	RNASEH2A (ENSRFEG00010021379) #21	THSD8 (ENSRFEG00010021389)	PRDX2 (ENSRFEG00010021398) #22	JUNB (ENSRFEG00010021403) #23	HOOK2 (ENSRFEG00010021413) #24	BEST2 (ENSRFEG00010021431) #25	GET3 (ENSRFEG00010021439) #26	TRIR (ENSRFEG00010021446) #27	TNPO2 (ENSRFEG00010021459) #28	FBXW9 (ENSRFEG00010021482) #29	ENSRFEG00010021496	DHPS (ENSRFEG00010021515) #30	WDR83 (ENSRFEG00010021533) #31	WDR83OS (ENSRFEG00010021544) #32	MAN2B1 (ENSRFEG00010021563) #33	ENSRFEG00010021582 ##34	ENSRFEG00010021592 ##34	ENSRFEG00010021596
Equus	ANCESTRAL SPECIES	55	ENSGT00940000162404 #9	ENSGT00950000182916.a.b.a.a.a.b.b #10	ENSGT00950000185200	ENSGT00530000063926.b	ENSGT00390000013719 #11	ENSGT00390000012078.a.b #12	ENSGT00950000182915.b.b.a.a #13	ENSGT00390000006387 #14	ENSGT00390000004872 #15	ENSGT00940000158116 #17	ENSGT00940000161856 #16	ENSGT00390000002634.a #18	ENSGT00940000157700 #19	ENSGT00950000183144.B #20	ENSGT00390000010768 #21	ENSGT00940000155828 #22	ENSGT00940000161195 #23	ENSGT00940000160152 #24	ENSGT00940000161361 #25	ENSGT00390000003817 #26	ENSGT00390000012267 #27	ENSGT00940000156708.a.a #28	ENSGT00390000006806 #29	ENSGT01100000263497.E.a.a	ENSGT00390000008063 #30	ENSGT00940000159016 #31	ENSGT00390000002121 #32	ENSGT01030000234638.b.a.a #33	ENSGT00950000182755.b.a.a.a.a.a.a.b.j #34	ENSGT00950000182755.b.a.a.a.a.a.b ##34	ENSGT00950000182755.b.a.a.a.a.a.a.a.a.a.a.b.b ##34
Horse	MODERN SPECIES	28	NFIX (ENSECAG00000019690) #10	ENSECAG00000031092	GADD45GIP1 (ENSECAG00000003766) #11	DAND5 (ENSECAG00000024508)	RAD23A (ENSECAG00000024607) #12	CALR (ENSECAG00000008164)	FARSA (ENSECAG00000015139) #14	SYCE2 (ENSECAG00000052051) #15	GCDH (ENSECAG00000012495) #17	KLF1 (ENSECAG00000027715) #16	DNASE2 (ENSECAG00000018970) #18	MAST1 (ENSECAG00000022473) #19	RTBDN (ENSECAG00000001223) #20	RNASEH2A (ENSECAG00000007013) #21	JUNB (ENSECAG00000003816) #23	PRDX2 (ENSECAG00000011541) #22	HOOK2 (ENSECAG00000014343) #24	BEST2 (ENSECAG00000038067) #25	GET3 (ENSECAG00000007103) #26	TRIR (ENSECAG00000012154) #27	TNPO2 (ENSECAG00000013673) #28	FBXW9 (ENSECAG00000005017) #29	GNG14 (ENSECAG00000008886)	DHPS (ENSECAG00000009177) #30	WDR83 (ENSECAG00000019788) #31	WDR83OS (ENSECAG00000058865) #32	MAN2B1 (ENSECAG00000022546) #33	ENSECAG00000034536 #34	ENSECAG00000045532	ENSECAG00000058983 ##34	ENSECAG00000049508 ##34
Donkey	MODERN SPECIES	12	NFIX (ENSEASG00005004061) #10	ENSEASG00005028746	DAND5 (ENSEASG00005004075)	GADD45GIP1 (ENSEASG00005035955) #11	RAD23A (ENSEASG00005004081) #12	CALR (ENSEASG00005004089) #13	FARSA (ENSEASG00005004093) #14	ENSEASG00005034575 #15	GCDH (ENSEASG00005004102) #17	KLF1 (ENSEASG00005004104) #16	DNASE2 (ENSEASG00005004105) #18	MAST1 (ENSEASG00005004109) #19	RTBDN (ENSEASG00005004115) #20	RNASEH2A (ENSEASG00005004118) #21	JUNB (ENSEASG00005032517) #23	PRDX2 (ENSEASG00005004125) #22	HOOK2 (ENSEASG00005004135) #24	BEST2 (ENSEASG00005004149) #25	GET3 (ENSEASG00005004153) #26	TRIR (ENSEASG00005004158) #27	TNPO2 (ENSEASG00005004160) #28	FBXW9 (ENSEASG00005004179) #29	ENSEASG00005024096	DHPS (ENSEASG00005004189) #30	WDR83 (ENSEASG00005004195) #31	WDR83OS (ENSEASG00005036170) #32	ENSEASG00005004211 #33	ENSEASG00005031648 #35	ENSEASG00005036541 #34	ENSEASG00005029679 ##34	ENSEASG00005025019 ##34