Artiodactyla ANCESTRAL SPECIES 22 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00530000063926.b ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00440000039287 #37 ENSGT00940000163044 Artiodactyla_a ANCESTRAL SPECIES 23 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00530000063926.b ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00440000039287 #37 ENSGT00940000163044 Artiodactyla_b ANCESTRAL SPECIES 23 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00530000063926.b ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##36 ENSGT00440000039287 #37 Pecora ANCESTRAL SPECIES ENSGT00530000063646.b #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##36 ENSGT00440000039287 #37 Percora_a ANCESTRAL SPECIES ENSGT00530000063646.b #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##36 ENSGT00440000039287 #37 Bovidae ANCESTRAL SPECIES ENSGT00530000063646.b #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.b ##36 ENSGT00440000039287 #37 Bovinae ANCESTRAL SPECIES 2 ENSGT00530000063646.b #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.b ##36 ENSGT00440000039287 #37 Bos ANCESTRAL SPECIES 3 ENSGT00530000063646.b.r #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.b.j #36 ENSGT00950000182755.b.a.b ##36 ENSGT00440000039287 #37 Bos_a ANCESTRAL SPECIES 57 ENSGT00530000063646.b.r #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.b.b.a ##36 ENSGT00950000182755.b.a.b ##36 ENSGT00440000039287 #37 Domestic yak MODERN SPECIES 27 TRMT1 (ENSBGRG00000008629) #7 LYL1 (ENSBGRG00000008585) #8 NFIX (ENSBGRG00000007656) #9 GADD45GIP1 (ENSBGRG00000007568) #10 RAD23A (ENSBGRG00000007230) #11 CALR (ENSBGRG00000007159) #12 FARSA (ENSBGRG00000006949) #13 SYCE2 (ENSBGRG00000006880) #14 GCDH (ENSBGRG00000006775) #15 KLF1 (ENSBGRG00000006745) #16 DNASE2 (ENSBGRG00000006722) #17 MAST1 (ENSBGRG00000006558) #18 RTBDN (ENSBGRG00000006406) #19 RNASEH2A (ENSBGRG00000006330) #20 THSD8 (ENSBGRG00000006299) #21 PRDX2 (ENSBGRG00000006234) #22 JUNB (ENSBGRG00000006220) #23 HOOK2 (ENSBGRG00000005838) #24 BEST2 (ENSBGRG00000005756) #25 GET3 (ENSBGRG00000005656) #26 TRIR (ENSBGRG00000005621) #27 TNPO2 (ENSBGRG00000005497) #28 FBXW9 (ENSBGRG00000005389) #29 ENSBGRG00000005368 #30 DHPS (ENSBGRG00000005293) #31 WDR83 (ENSBGRG00000005260) #32 WDR83OS (ENSBGRG00000005213) #33 MAN2B1 (ENSBGRG00000005041) #34 ENSBGRG00000005014 #35 ENSBGRG00000004914 #36 ENSBGRG00000004802 #37 Wild yak MODERN SPECIES 1191 TRMT1 (ENSBMUG00000015157) #7 LYL1 (ENSBMUG00000015125) #8 NFIX (ENSBMUG00000015081) #9 GADD45GIP1 (ENSBMUG00000015011) #10 RAD23A (ENSBMUG00000014991) #11 CALR (ENSBMUG00000014947) #12 FARSA (ENSBMUG00000014925) #13 SYCE2 (ENSBMUG00000014874) #14 GCDH (ENSBMUG00000014853) #15 KLF1 (ENSBMUG00000014835) #16 DNASE2 (ENSBMUG00000014821) #17 MAST1 (ENSBMUG00000014789) #18 RTBDN (ENSBMUG00000014745) #19 RNASEH2A (ENSBMUG00000014723) #20 THSD8 (ENSBMUG00000014710) #21 PRDX2 (ENSBMUG00000014704) #22 HOOK2 (ENSBMUG00000014550) #24 BEST2 (ENSBMUG00000014141) #25 ASNA1 (ENSBMUG00000014104) #26 TRIR (ENSBMUG00000014082) #27 TNPO2 (ENSBMUG00000013142) #28 FBXW9 (ENSBMUG00000012328) #29 ENSBMUG00000012320 #30 DHPS (ENSBMUG00000012304) #31 WDR83 (ENSBMUG00000012287) #32 WDR83OS (ENSBMUG00000012262) #33 MAN2B1 (ENSBMUG00000012248) #34 ENSBMUG00000012228 ##36 ENSBMUG00000012181 ##36 ENSBMUG00000012138 ENSBMUG00000012125 Bos_b ANCESTRAL SPECIES 2 ENSGT00940000159327 ENSGT00530000063646.b.r #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.b.j #36 ENSGT00950000182755.b.a.b ##36 ENSGT00440000039287 #37 Cow MODERN SPECIES 26 NACC1 (ENSBTAG00000016350) TRMT1 (ENSBTAG00000019325) #7 LYL1 (ENSBTAG00000019329) #8 NFIX (ENSBTAG00000018229) #9 GADD45GIP1 (ENSBTAG00000015117) #10 RAD23A (ENSBTAG00000015116) #11 CALR (ENSBTAG00000015114) #12 FARSA (ENSBTAG00000021374) #13 SYCE2 (ENSBTAG00000016213) #14 GCDH (ENSBTAG00000016211) #15 KLF1 (ENSBTAG00000006083) #16 DNASE2 (ENSBTAG00000006082) #17 MAST1 (ENSBTAG00000006080) #18 RTBDN (ENSBTAG00000006077) #19 RNASEH2A (ENSBTAG00000009661) #20 PRDX2 (ENSBTAG00000012062) #22 JUNB (ENSBTAG00000012046) #23 HOOK2 (ENSBTAG00000008654) #24 BEST2 (ENSBTAG00000025652) #25 GET3 (ENSBTAG00000011837) #26 TRIR (ENSBTAG00000011825) #27 TNPO2 (ENSBTAG00000011811) #28 FBXW9 (ENSBTAG00000020924) #29 GNG14 (ENSBTAG00000006251) #30 DHPS (ENSBTAG00000006247) #31 WDR83 (ENSBTAG00000006245) #32 WDR83OS (ENSBTAG00000006244) #33 MAN2B1 (ENSBTAG00000006241) #34 ENSBTAG00000016721 #36 ENSBTAG00000049339 ##36 ENSBTAG00000055295 #37 Hybrid Bos Indicus MODERN SPECIES 26 TRMT1 (ENSBIXG00005022272) #7 LYL1 (ENSBIXG00005003796) #8 NACC1 (ENSBIXG00005003906) GADD45GIP1 (ENSBIXG00005022995) #10 RAD23A (ENSBIXG00005023035) #11 CALR (ENSBIXG00005023092) #12 FARSA (ENSBIXG00005023164) #13 ENSBIXG00005023188 #14 GCDH (ENSBIXG00005006673) #15 KLF1 (ENSBIXG00005006052) #16 DNASE2 (ENSBIXG00005023267) #17 MAST1 (ENSBIXG00005023334) #18 RTBDN (ENSBIXG00005007174) #19 RNASEH2A (ENSBIXG00005023406) #20 JUNB (ENSBIXG00005023431) #23 PRDX2 (ENSBIXG00005004022) #22 HOOK2 (ENSBIXG00005023624) #24 BEST2 (ENSBIXG00005004058) #25 GET3 (ENSBIXG00005023763) #26 TNPO2 (ENSBIXG00005024052) #28 ENSBIXG00005024114 #30 FBXW9 (ENSBIXG00005024191) #29 DHPS (ENSBIXG00005024243) #31 WDR83 (ENSBIXG00005004147) #32 WDR83OS (ENSBIXG00005024294) #33 MAN2B1 (ENSBIXG00005024343) #34 ENSBIXG00005024372 #36 ENSBIXG00005004163 ##35 ENSBIXG00005024398 ##36 ENSBIXG00005004175 ENSBIXG00005024470 American bison MODERN SPECIES 3279 TRMT1 (ENSBBBG00000019284) #7 LYL1 (ENSBBBG00000019215) #8 NFIX (ENSBBBG00000019204) #9 ENSBBBG00000008167 #10 RAD23A (ENSBBBG00000019119) #11 CALR (ENSBBBG00000004880) #12 FARSA (ENSBBBG00000019049) #13 SYCE2 (ENSBBBG00000004849) #14 GCDH (ENSBBBG00000004838) #15 KLF1 (ENSBBBG00000004825) #16 DNASE2 (ENSBBBG00000018969) #17 MAST1 (ENSBBBG00000018956) #18 RTBDN (ENSBBBG00000018793) #19 RNASEH2A (ENSBBBG00000018775) #20 THSD8 (ENSBBBG00000018770) #21 PRDX2 (ENSBBBG00000008767) #22 HOOK2 (ENSBBBG00000009147) #24 BEST2 (ENSBBBG00000018649) #25 GET3 (ENSBBBG00000004626) #26 ENSBBBG00000018618 TNPO2 (ENSBBBG00000018607) #28 FBXW9 (ENSBBBG00000018508) #29 ENSBBBG00000018499 #30 DHPS (ENSBBBG00000004547) #31 WDR83 (ENSBBBG00000018478) #32 WDR83OS (ENSBBBG00000004534) #33 MAN2B1 (ENSBBBG00000018459) #34 ENSBBBG00000018419 #36 ENSBBBG00000018415 ##36 ENSBBBG00000018390 ENSBBBG00000018386 ##36 Caprinae ANCESTRAL SPECIES 3 ENSGT00530000063646.b #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00940000156532.l ENSGT00950000182755.b.a.a.a.a.a.a.b.j #36 ENSGT00950000182755.b.a.a.a.a.a.a.b.i ##36 Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES 2 ACACA (ENSOARG00020023744) ENSOARG00020024324 AATF (ENSOARG00020024358) ENSOARG00020024441 LHX1 (ENSOARG00020024449) MRM1 (ENSOARG00020024467) GGNBP2 (ENSOARG00020024497) PIGW (ENSOARG00020024630) MYO19 (ENSOARG00020024654) ZNHIT3 (ENSOARG00020024765) CA4 (ENSOARG00020024778) ENSOARG00020024810 ENSOARG00020024981 CHCT1 (ENSOARG00020009988) APPBP2 (ENSOARG00020010094) ENSOARG00020010189 #22 PPM1D (ENSOARG00020010254) BCAS3 (ENSOARG00020010530) TBX2 (ENSOARG00020011127) TBX4 (ENSOARG00020011171) ENSOARG00020011344 BRIP1 (ENSOARG00020011382) ENSOARG00020011548 INTS2 (ENSOARG00020011586) MED13 (ENSOARG00020011969) RNFT1 (ENSOARG00020012186) RPS6KB1 (ENSOARG00020012243) TUBD1 (ENSOARG00020012492) ENSOARG00020012920 VMP1 (ENSOARG00020012971) PTRH2 (ENSOARG00020013039) Rambouillet Sheep MODERN SPECIES 21 NACC1 (ENSOARG00020008294) TRMT1 (ENSOARG00020008381) #7 LYL1 (ENSOARG00020008580) #8 NFIX (ENSOARG00020008684) #9 GADD45GIP1 (ENSOARG00020009801) #10 RAD23A (ENSOARG00020009840) #11 CALR (ENSOARG00020009931) #12 FARSA (ENSOARG00020010040) #13 GCDH (ENSOARG00020010253) #15 KLF1 (ENSOARG00020010329) #16 DNASE2 (ENSOARG00020010363) #17 MAST1 (ENSOARG00020010455) #18 RTBDN (ENSOARG00020011079) #19 RNASEH2A (ENSOARG00020011239) #20 THSD8 (ENSOARG00020011281) #21 PRDX2 (ENSOARG00020011331) #22 JUNB (ENSOARG00020011427) #23 BEST2 (ENSOARG00020011833) #25 ASNA1 (ENSOARG00020011930) #26 TRIR (ENSOARG00020012000) #27 TNPO2 (ENSOARG00020012156) #28 FBXW9 (ENSOARG00020012297) #29 ENSOARG00020012653 #30 DHPS (ENSOARG00020012703) #31 WDR83 (ENSOARG00020012835) #32 WDR83OS (ENSOARG00020012900) #33 MAN2B1 (ENSOARG00020012993) #34 ENSOARG00020013719 ENSOARG00020000232 ENSOARG00020000407 ##36 ENSOARG00020000419 ##36 Goat DUPLICATION Goat MODERN SPECIES 10 ENSCHIG00000019766 C17orf78 (ENSCHIG00000025907) ACACA (ENSCHIG00000014642) AATF (ENSCHIG00000010438) LHX1 (ENSCHIG00000022067) MRM1 (ENSCHIG00000008558) DHRS11 (ENSCHIG00000014977) GGNBP2 (ENSCHIG00000018194) PIGW (ENSCHIG00000013107) MYO19 (ENSCHIG00000025193) ENSCHIG00000015170 CA4 (ENSCHIG00000026507) ENSCHIG00000019250 CHCT1 (ENSCHIG00000012925) APPBP2 (ENSCHIG00000027119) ENSCHIG00000017975 #22 PPM1D (ENSCHIG00000023763) BCAS3 (ENSCHIG00000015855) TBX2 (ENSCHIG00000014418) TBX4 (ENSCHIG00000020604) ENSCHIG00000023949 BRIP1 (ENSCHIG00000015958) INTS2 (ENSCHIG00000025276) MED13 (ENSCHIG00000022580) ENSCHIG00000019101 RPS6KB1 (ENSCHIG00000005906) TUBD1 (ENSCHIG00000017656) VMP1 (ENSCHIG00000026133) PTRH2 (ENSCHIG00000010059) CLTC (ENSCHIG00000025765) DHX40 (ENSCHIG00000016173) Goat MODERN SPECIES 26 NACC1 (ENSCHIG00000023771) TRMT1 (ENSCHIG00000013569) #7 LYL1 (ENSCHIG00000027128) #8 NFIX (ENSCHIG00000022384) #9 GADD45GIP1 (ENSCHIG00000017823) #10 RAD23A (ENSCHIG00000017626) #11 CALR (ENSCHIG00000023446) #12 FARSA (ENSCHIG00000022617) #13 SYCE2 (ENSCHIG00000023183) #14 GCDH (ENSCHIG00000008032) #15 KLF1 (ENSCHIG00000024201) #16 DNASE2 (ENSCHIG00000018237) #17 MAST1 (ENSCHIG00000012078) #18 RTBDN (ENSCHIG00000018795) #19 RNASEH2A (ENSCHIG00000014460) #20 ENSCHIG00000008839 #22 JUNB (ENSCHIG00000007846) #23 HOOK2 (ENSCHIG00000017730) #24 BEST2 (ENSCHIG00000009210) #25 GET3 (ENSCHIG00000023078) #26 TRIR (ENSCHIG00000017848) #27 TNPO2 (ENSCHIG00000011718) #28 FBXW9 (ENSCHIG00000027225) #29 ENSCHIG00000018933 #30 DHPS (ENSCHIG00000011017) #31 WDR83 (ENSCHIG00000025793) #32 WDR83OS (ENSCHIG00000020903) #33 MAN2B1 (ENSCHIG00000001921) #34 ENSCHIG00000016295 ENSCHIG00000019636 ENSCHIG00000008992 #36 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 1135 ENSMMSG00000010886 ENSMMSG00000010857 ACACA (ENSMMSG00000009380) AATF (ENSMMSG00000009137) LHX1 (ENSMMSG00000009094) MRM1 (ENSMMSG00000009048) DHRS11 (ENSMMSG00000009003) GGNBP2 (ENSMMSG00000008896) PIGW (ENSMMSG00000008870) MYO19 (ENSMMSG00000008719) ZNHIT3 (ENSMMSG00000008678) CA4 (ENSMMSG00000008660) ENSMMSG00000008476 CHCT1 (ENSMMSG00000008435) APPBP2 (ENSMMSG00000008396) ENSMMSG00000008344 #22 PPM1D (ENSMMSG00000008295) BCAS3 (ENSMMSG00000008066) TBX2 (ENSMMSG00000007917) TBX4 (ENSMMSG00000018587) ENSMMSG00000018558 BRIP1 (ENSMMSG00000018426) INTS2 (ENSMMSG00000018213) MED13 (ENSMMSG00000018082) ENSMMSG00000018037 ENSMMSG00000017945 RNFT1 (ENSMMSG00000017906) RPS6KB1 (ENSMMSG00000017714) TUBD1 (ENSMMSG00000017458) VMP1 (ENSMMSG00000017374) PTRH2 (ENSMMSG00000017362) Siberian musk deer MODERN SPECIES 34 TRMT1 (ENSMMSG00000018011) #7 LYL1 (ENSMMSG00000017977) #8 NFIX (ENSMMSG00000017773) #9 GADD45GIP1 (ENSMMSG00000017735) #10 RAD23A (ENSMMSG00000017530) #11 ENSMMSG00000017464 #12 FARSA (ENSMMSG00000017435) #13 SYCE2 (ENSMMSG00000017412) #14 GCDH (ENSMMSG00000017382) #15 KLF1 (ENSMMSG00000017358) #16 DNASE2 (ENSMMSG00000017335) #17 MAST1 (ENSMMSG00000017118) #18 RTBDN (ENSMMSG00000017054) #19 RNASEH2A (ENSMMSG00000017025) #20 THSD8 (ENSMMSG00000017010) #21 ENSMMSG00000016984 #22 JUNB (ENSMMSG00000016968) #23 HOOK2 (ENSMMSG00000016914) #24 BEST2 (ENSMMSG00000016855) #25 GET3 (ENSMMSG00000016786) #26 TRIR (ENSMMSG00000016742) #27 TNPO2 (ENSMMSG00000016676) #28 FBXW9 (ENSMMSG00000016611) #29 ENSMMSG00000016585 #30 DHPS (ENSMMSG00000016482) #31 WDR83 (ENSMMSG00000016414) #32 ENSMMSG00000016351 #33 MAN2B1 (ENSMMSG00000016295) #34 ENSMMSG00000016218 #36 ENSMMSG00000016203 ##36 ENSMMSG00000016189 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 28 ENSCHYG00000003891 ENSCHYG00000003881 ELF2 (ENSCHYG00000003820) NOCT (ENSCHYG00000003790) ENSCHYG00000003782 ENSCHYG00000003775 SLC7A11 (ENSCHYG00000003749) ENSCHYG00000003723 PCDH18 (ENSCHYG00000003685) ENSCHYG00000003660 ENSCHYG00000003650 ENSCHYG00000003641 PABPC4L (ENSCHYG00000003623) ENSCHYG00000003606 PCDH10 (ENSCHYG00000003589) ENSCHYG00000003572 #22 ENSCHYG00000003561 C4orf33 (ENSCHYG00000003546) SCLT1 (ENSCHYG00000003454) JADE1 (ENSCHYG00000003379) PGRMC2 (ENSCHYG00000003351) ENSCHYG00000003328 ENSCHYG00000003312 LARP1B (ENSCHYG00000003154) ENSCHYG00000003101 ABHD18 (ENSCHYG00000003039) MFSD8 (ENSCHYG00000002571) PLK4 (ENSCHYG00000002235) HSPA4L (ENSCHYG00000002146) INTU (ENSCHYG00000001993) FAT4 (ENSCHYG00000001903) Yarkand deer MODERN SPECIES 1323 NEXMIF (ENSCHYG00000013048) ENSCHYG00000013033 ABCB7 (ENSCHYG00000012079) UPRT (ENSCHYG00000011786) ZDHHC15 (ENSCHYG00000011470) MAGEE2 (ENSCHYG00000011410) ENSCHYG00000011362 ENSCHYG00000011310 FGF16 (ENSCHYG00000011260) ENSCHYG00000011219 ATRX (ENSCHYG00000011090) MAGT1 (ENSCHYG00000010961) ENSCHYG00000010895 ATP7A (ENSCHYG00000010379) ENSCHYG00000010341 ##35 ENSCHYG00000010325 #22 ENSCHYG00000010187 TAF9B (ENSCHYG00000010082) ENSCHYG00000009821 CYSLTR1 (ENSCHYG00000009807) LPAR4 (ENSCHYG00000009794) P2RY10 (ENSCHYG00000009753) GPR174 (ENSCHYG00000009735) ITM2A (ENSCHYG00000009688) TBX22 (ENSCHYG00000009606) ENSCHYG00000009550 TENT5D (ENSCHYG00000009524) ENSCHYG00000009482 ENSCHYG00000009463 BRWD3 (ENSCHYG00000008984) ENSCHYG00000008921 Yarkand deer MODERN SPECIES 32 STX10 (ENSCHYG00000015356) NACC1 (ENSCHYG00000015883) TRMT1 (ENSCHYG00000016033) #7 LYL1 (ENSCHYG00000016421) #8 NFIX (ENSCHYG00000016512) #9 GADD45GIP1 (ENSCHYG00000017788) #10 ENSCHYG00000017855 #12 FARSA (ENSCHYG00000018361) #13 GCDH (ENSCHYG00000018661) #15 KLF1 (ENSCHYG00000019002) #16 DNASE2 (ENSCHYG00000019086) #17 MAST1 (ENSCHYG00000019171) #18 ENSCHYG00000019426 RTBDN (ENSCHYG00000019447) #19 RNASEH2A (ENSCHYG00000019565) #20 ENSCHYG00000019679 #22 JUNB (ENSCHYG00000019794) #23 HOOK2 (ENSCHYG00000019849) #24 BEST2 (ENSCHYG00000020079) #25 ENSCHYG00000020173 #26 TRIR (ENSCHYG00000020314) #27 TNPO2 (ENSCHYG00000020399) #28 FBXW9 (ENSCHYG00000020520) #29 ENSCHYG00000020822 #30 DHPS (ENSCHYG00000020871) #31 WDR83 (ENSCHYG00000021020) #32 ENSCHYG00000021159 #33 MAN2B1 (ENSCHYG00000021233) #34 ENSCHYG00000021342 ENSCHYG00000021396 ##36 ENSCHYG00000021432 Cetacea ANCESTRAL SPECIES 1 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00530000063926.b ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.m #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.b.a.b.b.a.a ##36 ENSGT00440000039287 #37 ENSGT00940000163044 Blue whale MODERN SPECIES 14 TRMT1 (ENSBMSG00010006254) #7 LYL1 (ENSBMSG00010006239) #8 NFIX (ENSBMSG00010006215) #9 GADD45GIP1 (ENSBMSG00010006182) #10 RAD23A (ENSBMSG00010006168) #11 ENSBMSG00010006144 #12 FARSA (ENSBMSG00010006124) #13 ENSBMSG00010006111 GCDH (ENSBMSG00010006092) #15 KLF1 (ENSBMSG00010006067) #16 DNASE2 (ENSBMSG00010006057) #17 MAST1 (ENSBMSG00010006004) #18 RTBDN (ENSBMSG00010005967) #19 RNASEH2A (ENSBMSG00010005947) #20 THSD8 (ENSBMSG00010005934) #21 PRDX2 (ENSBMSG00010005921) #22 JUNB (ENSBMSG00010005909) #23 HOOK2 (ENSBMSG00010005872) #24 BEST2 (ENSBMSG00010005835) #25 GET3 (ENSBMSG00010005817) #26 TRIR (ENSBMSG00010005806) #27 TNPO2 (ENSBMSG00010005781) #28 FBXW9 (ENSBMSG00010005739) #29 ENSBMSG00010005715 #30 DHPS (ENSBMSG00010005704) #31 WDR83 (ENSBMSG00010005695) #32 WDR83OS (ENSBMSG00010005684) #33 MAN2B1 (ENSBMSG00010005667) #34 ENSBMSG00010005656 ENSBMSG00010005651 #36 ENSBMSG00010005640 #36 Odontoceti ANCESTRAL SPECIES 1 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00530000063926.b ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.m #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a ##36 ENSGT00440000039287 #37 ENSGT00940000163044 Sperm whale MODERN SPECIES 26 GADD45GIP1 (ENSPCTG00005019623) #10 RAD23A (ENSPCTG00005019572) #11 CALR (ENSPCTG00005019546) #12 FARSA (ENSPCTG00005019481) #13 SYCE2 (ENSPCTG00005019462) #14 GCDH (ENSPCTG00005019424) #15 KLF1 (ENSPCTG00005019380) #16 DNASE2 (ENSPCTG00005019363) #17 MAST1 (ENSPCTG00005019033) #18 RTBDN (ENSPCTG00005018893) #19 RNASEH2A (ENSPCTG00005018850) #20 THSD8 (ENSPCTG00005018824) #21 PRDX2 (ENSPCTG00005018785) #22 JUNB (ENSPCTG00005018767) #23 HOOK2 (ENSPCTG00005018712) #24 BEST2 (ENSPCTG00005018605) #25 ASNA1 (ENSPCTG00005018458) #26 TRIR (ENSPCTG00005018441) #27 TNPO2 (ENSPCTG00005018339) #28 FBXW9 (ENSPCTG00005018271) #29 ENSPCTG00005018240 #30 DHPS (ENSPCTG00005018077) #31 WDR83 (ENSPCTG00005018037) #32 WDR83OS (ENSPCTG00005017991) #33 Odontoceti_a ANCESTRAL SPECIES 1 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00530000063926.b ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.m #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b ##36 ENSGT00440000039287 #37 ENSGT00940000163783 Dolphin MODERN SPECIES 135 GADD45GIP1 (ENSTTRG00000003602) #10 RAD23A (ENSTTRG00000003601) #11 CALR (ENSTTRG00000003600) #12 FARSA (ENSTTRG00000003599) #13 SYCE2 (ENSTTRG00000003598) #14 GCDH (ENSTTRG00000003597) #15 KLF1 (ENSTTRG00000003596) #16 DNASE2 (ENSTTRG00000003595) #17 MAST1 (ENSTTRG00000003594) #18 RTBDN (ENSTTRG00000003593) #19 RNASEH2A (ENSTTRG00000003592) #20 PRDX2 (ENSTTRG00000003591) #22 JUNB (ENSTTRG00000003590) #23 HOOK2 (ENSTTRG00000003588) #24 BEST2 (ENSTTRG00000003586) #25 Odontoceti_b ANCESTRAL SPECIES 1 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.m #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b ##36 ENSGT00440000039287 #37 ENSGT00940000163783 Monodontidae ANCESTRAL SPECIES 17 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.m #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000266406 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b ##36 ENSGT00440000039287 #37 ENSGT00940000163783 Beluga whale MODERN SPECIES 27 NACC1 (ENSDLEG00000010956) TRMT1 (ENSDLEG00000010945) #7 LYL1 (ENSDLEG00000010935) #8 NFIX (ENSDLEG00000010831) #9 GADD45GIP1 (ENSDLEG00000010807) #10 RAD23A (ENSDLEG00000010781) #11 CALR (ENSDLEG00000010762) #12 FARSA (ENSDLEG00000010737) #13 SYCE2 (ENSDLEG00000010725) #14 KLF1 (ENSDLEG00000010698) #16 GCDH (ENSDLEG00000010654) #15 DNASE2 (ENSDLEG00000010624) #17 MAST1 (ENSDLEG00000010566) #18 RTBDN (ENSDLEG00000010548) #19 RNASEH2A (ENSDLEG00000010529) #20 PRDX2 (ENSDLEG00000010520) #22 JUNB (ENSDLEG00000010512) #23 HOOK2 (ENSDLEG00000010436) #24 BEST2 (ENSDLEG00000010397) #25 ASNA1 (ENSDLEG00000010378) #26 TRIR (ENSDLEG00000010365) #27 TNPO2 (ENSDLEG00000010236) #28 FBXW9 (ENSDLEG00000010197) #29 DHPS (ENSDLEG00000010176) #31 WDR83 (ENSDLEG00000010152) #32 WDR83OS (ENSDLEG00000010133) #33 MAN2B1 (ENSDLEG00000010021) #34 ENSDLEG00000010003 #36 ENSDLEG00000009987 ##36 ENSDLEG00000009975 #36 ENSDLEG00000009886 ##36 Narwhal MODERN SPECIES 298 LYL1 (ENSMMNG00015005401) #8 NFIX (ENSMMNG00015005457) #9 ENSMMNG00015005553 GADD45GIP1 (ENSMMNG00015005584) #10 RAD23A (ENSMMNG00015004840) #11 ENSMMNG00015004845 #12 FARSA (ENSMMNG00015004851) #13 SYCE2 (ENSMMNG00015004858) #14 GCDH (ENSMMNG00015004861) #15 KLF1 (ENSMMNG00015004865) #16 DNASE2 (ENSMMNG00015004869) #17 MAST1 (ENSMMNG00015004880) #18 RTBDN (ENSMMNG00015004901) #19 RNASEH2A (ENSMMNG00015004907) #20 THSD8 (ENSMMNG00015004915) #21 PRDX2 (ENSMMNG00015004919) #22 JUNB (ENSMMNG00015004931) #23 HOOK2 (ENSMMNG00015004937) #24 BEST2 (ENSMMNG00015004949) #25 GET3 (ENSMMNG00015004960) #26 TRIR (ENSMMNG00015004970) #27 TNPO2 (ENSMMNG00015004980) #28 FBXW9 (ENSMMNG00015005000) #29 ENSMMNG00015005005 DHPS (ENSMMNG00015005018) #31 WDR83 (ENSMMNG00015005037) #32 WDR83OS (ENSMMNG00015005049) #33 MAN2B1 (ENSMMNG00015005071) #34 ENSMMNG00015005109 ENSMMNG00015005113 ##36 ENSMMNG00015005127 #36 Vaquita MODERN SPECIES 14 NACC1 (ENSPSNG00000005645) TRMT1 (ENSPSNG00000005699) #7 LYL1 (ENSPSNG00000005801) #8 NFIX (ENSPSNG00000005985) #9 ENSPSNG00000006174 GADD45GIP1 (ENSPSNG00000006226) #10 RAD23A (ENSPSNG00000006274) #11 CALR (ENSPSNG00000006361) #12 FARSA (ENSPSNG00000006551) #13 GCDH (ENSPSNG00000006697) #15 KLF1 (ENSPSNG00000006733) #16 DNASE2 (ENSPSNG00000006758) #17 MAST1 (ENSPSNG00000006815) #18 RTBDN (ENSPSNG00000007000) #19 RNASEH2A (ENSPSNG00000007087) #20 PRDX2 (ENSPSNG00000007156) #22 JUNB (ENSPSNG00000007194) #23 HOOK2 (ENSPSNG00000007235) #24 BEST2 (ENSPSNG00000007304) #25 TRIR (ENSPSNG00000007370) #27 TNPO2 (ENSPSNG00000007421) #28 FBXW9 (ENSPSNG00000000092) #29 ENSPSNG00000000122 #30 DHPS (ENSPSNG00000000212) #31 WDR83OS (ENSPSNG00000000152) #33 WDR83 (ENSPSNG00000000274) #32 MAN2B1 (ENSPSNG00000000314) #34 ENSPSNG00000000399 #36 ENSPSNG00000000426 ##36 ENSPSNG00000000476 ##36 ENSPSNG00000000493 ##36 Camelidae ANCESTRAL SPECIES 69 ENSGT00940000159327 ENSGT00530000063646.b #7 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.a.b.j #36 ENSGT00440000039287 #37 ENSGT00940000163044 Arabian camel MODERN SPECIES 14 TRMT1 (ENSCDRG00005022165) #7 LYL1 (ENSCDRG00005022168) #8 NFIX (ENSCDRG00005022174) #9 ENSCDRG00005022176 GADD45GIP1 (ENSCDRG00005022178) #10 RAD23A (ENSCDRG00005022180) #11 CALR (ENSCDRG00005022183) #12 FARSA (ENSCDRG00005022184) #13 GCDH (ENSCDRG00005022187) #15 KLF1 (ENSCDRG00005022188) #16 DNASE2 (ENSCDRG00005022189) #17 MAST1 (ENSCDRG00005022190) #18 RTBDN (ENSCDRG00005022192) #19 RNASEH2A (ENSCDRG00005022193) #20 THSD8 (ENSCDRG00005022194) #21 PRDX2 (ENSCDRG00005022195) #22 JUNB (ENSCDRG00005022198) #23 HOOK2 (ENSCDRG00005022199) #24 BEST2 (ENSCDRG00005022200) #25 ASNA1 (ENSCDRG00005022202) #26 TRIR (ENSCDRG00005022203) #27 TNPO2 (ENSCDRG00005022205) #28 FBXW9 (ENSCDRG00005022210) #29 ENSCDRG00005022213 #30 DHPS (ENSCDRG00005022217) #31 WDR83 (ENSCDRG00005022223) #32 WDR83OS (ENSCDRG00005022225) #33 MAN2B1 (ENSCDRG00005022226) #34 ENSCDRG00005022228 #36 ENSCDRG00005022231 ##36 ENSCDRG00005022234 ##36 Alpaca MODERN SPECIES 1784 ENSVPAG00000003260 #22 Suina ANCESTRAL SPECIES 16 ENSGT00940000162404 #8 ENSGT00950000182916.a.b.a.a.a.b.b #9 ENSGT00860000135639 ENSGT00390000013719 #10 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #12 ENSGT00390000006387 #13 ENSGT00390000004872 #14 ENSGT00940000158116 #15 ENSGT00940000161856 #16 ENSGT00390000002634.a #17 ENSGT00940000157700 #18 ENSGT00950000183144.B #19 ENSGT00390000010768 #20 ENSGT00870000137755 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b ##36 ENSGT00950000182755.b.a.a.a.a.a.a.b.j #36 ENSGT00950000182755.b.a.a.a.a.a.a.b.i ##36 Pig DUPLICATION Pig MODERN SPECIES ENSSSCG00000057761 ENSSSCG00000031194 TBX18 (ENSSSCG00000004290) CEP162 (ENSSSCG00000004289) MRAP2 (ENSSSCG00000026943) CYB5R4 (ENSSSCG00000022994) ENSSSCG00000004287 OOEP (ENSSSCG00000004285) ENSSSCG00000058051 DPPA5 (ENSSSCG00000004283) ENSSSCG00000053554 ENSSSCG00000046325 KCNQ5 (ENSSSCG00000004281) RIMS1 (ENSSSCG00000004280) OGFRL1 (ENSSSCG00000004279) ENSSSCG00000058784 #22 B3GAT2 (ENSSSCG00000026246) SMAP1 (ENSSSCG00000004276) SDHAF4 (ENSSSCG00000051834) FAM135A (ENSSSCG00000004275) COL9A1 (ENSSSCG00000004274) COL19A1 (ENSSSCG00000044472) ENSSSCG00000061940 LMBRD1 (ENSSSCG00000004272) ADGRB3 (ENSSSCG00000004270) ENSSSCG00000004269 PHF3 (ENSSSCG00000035259) PTP4A1 (ENSSSCG00000025941) ENSSSCG00000032533 RSPH4A (ENSSSCG00000023834) ZUP1 (ENSSSCG00000004263) Pig MODERN SPECIES 10 TRMT1 (ENSSSCG00000013744) #7 LYL1 (ENSSSCG00000024549) #8 NFIX (ENSSSCG00000013742) #9 ENSSSCG00000048273 RAD23A (ENSSSCG00000013747) #11 GADD45GIP1 (ENSSSCG00000034859) #10 CALR (ENSSSCG00000013746) #12 FARSA (ENSSSCG00000013745) #13 SYCE2 (ENSSSCG00000013740) #14 GCDH (ENSSSCG00000013729) #15 KLF1 (ENSSSCG00000013730) #16 DNASE2 (ENSSSCG00000013731) #17 MAST1 (ENSSSCG00000013732) #18 RTBDN (ENSSSCG00000033304) #19 RNASEH2A (ENSSSCG00000013737) #20 PRDX2 (ENSSSCG00000013736) #22 JUNB (ENSSSCG00000013735) #23 HOOK2 (ENSSSCG00000013734) #24 BEST2 (ENSSSCG00000013733) #25 GET3 (ENSSSCG00000038776) #26 TRIR (ENSSSCG00000013727) #27 TNPO2 (ENSSSCG00000013726) #28 FBXW9 (ENSSSCG00000013725) #29 ENSSSCG00000052605 #30 DHPS (ENSSSCG00000013723) #31 WDR83 (ENSSSCG00000013722) #32 WDR83OS (ENSSSCG00000013721) #33 MAN2B1 (ENSSSCG00000013720) #34 ENSSSCG00000029347 #36 ENSSSCG00000046939 ENSSSCG00000033388 ##36 Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 59 SYNCRIP (ENSCWAG00000010209) SNX14 (ENSCWAG00000009680) NT5E (ENSCWAG00000009378) TBX18 (ENSCWAG00000009292) CEP162 (ENSCWAG00000009113) MRAP2 (ENSCWAG00000009069) CYB5R4 (ENSCWAG00000008870) DDX43 (ENSCWAG00000008720) ENSCWAG00000008652 DPPA5 (ENSCWAG00000008587) ENSCWAG00000008542 KCNQ5 (ENSCWAG00000006051) ENSCWAG00000005944 RIMS1 (ENSCWAG00000001044) OGFRL1 (ENSCWAG00000000668) ENSCWAG00000000657 #22 B3GAT2 (ENSCWAG00000000640) SMAP1 (ENSCWAG00000000558) SDHAF4 (ENSCWAG00000000537) FAM135A (ENSCWAG00000000436) COL9A1 (ENSCWAG00000000201) COL19A1 (ENSCWAG00000000048) LMBRD1 (ENSCWAG00000008700) ADGRB3 (ENSCWAG00000008282) ENSCWAG00000008197 Chacoan peccary MODERN SPECIES 769 TRMT1 (ENSCWAG00000001026) #7 LYL1 (ENSCWAG00000001006) #8 NFIX (ENSCWAG00000000950) #9 GADD45GIP1 (ENSCWAG00000000909) #10 RAD23A (ENSCWAG00000000887) #11 CALR (ENSCWAG00000000858) #12 FARSA (ENSCWAG00000000829) #13 SYCE2 (ENSCWAG00000000797) #14 GCDH (ENSCWAG00000000760) #15 KLF1 (ENSCWAG00000000736) #16 DNASE2 (ENSCWAG00000000717) #17 MAST1 (ENSCWAG00000000559) #18 RTBDN (ENSCWAG00000000515) #19 RNASEH2A (ENSCWAG00000000486) #20 THSD8 (ENSCWAG00000000470) #21 ENSCWAG00000000453 #22 JUNB (ENSCWAG00000000438) #23