Euarchontoglires_A ANCESTRAL SPECIES 20 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00950000185200 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Glires ANCESTRAL SPECIES 21 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00950000185200 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Rodentia ANCESTRAL SPECIES 17 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00950000185200 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Rodentia_A ANCESTRAL SPECIES 16 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00950000185200 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Hystricomorpha ANCESTRAL SPECIES 55 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00950000185200 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.k.b ##13 ENSGT00950000182915.b.b.a.a.l #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 Hystricomorpha_a ANCESTRAL SPECIES 15 ENSGT00940000162404 #9 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.k.b ##13 ENSGT00950000182915.b.b.a.a.l #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 Guinea pig MODERN SPECIES 42 NACC1 (ENSCPOG00000022222) #7 TRMT1 (ENSCPOG00000011754) #8 LYL1 (ENSCPOG00000036111) #9 NFIX (ENSCPOG00000022563) #10 RAD23A (ENSCPOG00000037407) #11 GADD45GIP1 (ENSCPOG00000024072) #12 CALR (ENSCPOG00000000791) #13 FARSA (ENSCPOG00000000787) #14 ENSCPOG00000033097 #15 GCDH (ENSCPOG00000027058) #16 KLF1 (ENSCPOG00000000784) #17 DNASE2 (ENSCPOG00000000783) #18 MAST1 (ENSCPOG00000000777) #19 RTBDN (ENSCPOG00000000774) #20 RNASEH2A (ENSCPOG00000038877) #21 PRDX2 (ENSCPOG00000023583) #22 JUNB (ENSCPOG00000020703) #23 HOOK2 (ENSCPOG00000000771) #24 BEST2 (ENSCPOG00000000768) #25 GET3 (ENSCPOG00000026971) #26 TRIR (ENSCPOG00000003765) #27 TNPO2 (ENSCPOG00000007033) #28 FBXW9 (ENSCPOG00000007026) #29 ENSCPOG00000033374 #30 DHPS (ENSCPOG00000002309) #31 WDR83 (ENSCPOG00000002306) #32 WDR83OS (ENSCPOG00000022365) #33 MAN2B1 (ENSCPOG00000002295) #34 ENSCPOG00000023273 #35 ENSCPOG00000027337 #36 ENSCPOG00000023880 #37 Hystricomorpha_b ANCESTRAL SPECIES 31 ENSGT00940000162404 #9 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a.k.b ##13 ENSGT00950000182915.b.b.a.a.l #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00390000003094 ENSGT00660000095541.a.a ENSGT00390000013968 Degu MODERN SPECIES 114 LYL1 (ENSODEG00000010992) #9 NFIX (ENSODEG00000010171) #10 ENSODEG00000010129 GADD45GIP1 (ENSODEG00000010728) #12 RAD23A (ENSODEG00000011287) #11 CALR (ENSODEG00000010711) ##13 FARSA (ENSODEG00000010433) #14 ENSODEG00000010928 #15 GCDH (ENSODEG00000010247) #16 KLF1 (ENSODEG00000009692) #17 DNASE2 (ENSODEG00000009845) #18 ENSODEG00000011144 #19 ENSODEG00000012916 RTBDN (ENSODEG00000011942) #20 RNASEH2A (ENSODEG00000009772) #21 PRDX2 (ENSODEG00000009999) #22 JUNB (ENSODEG00000019944) #23 HOOK2 (ENSODEG00000011305) #24 BEST2 (ENSODEG00000010248) #25 GET3 (ENSODEG00000010662) #26 TRIR (ENSODEG00000010879) #27 TNPO2 (ENSODEG00000009670) #28 FBXW9 (ENSODEG00000010372) #29 ENSODEG00000013891 #30 ENSODEG00000011490 DHPS (ENSODEG00000010756) #31 WDR83 (ENSODEG00000010258) #32 WDR83OS (ENSODEG00000011674) #33 MAN2B1 (ENSODEG00000010434) #34 ENSODEG00000012183 ENSODEG00000012295 Long-tailed chinchilla MODERN SPECIES 122 TRMT1 (ENSCLAG00000015295) #8 LYL1 (ENSCLAG00000014483) #9 NFIX (ENSCLAG00000013479) #10 DAND5 (ENSCLAG00000011402) GADD45GIP1 (ENSCLAG00000015799) #12 RAD23A (ENSCLAG00000016638) #11 CALR (ENSCLAG00000012923) #13 FARSA (ENSCLAG00000015489) #14 SYCE2 (ENSCLAG00000014420) #15 GCDH (ENSCLAG00000015590) #16 KLF1 (ENSCLAG00000013218) #17 DNASE2 (ENSCLAG00000012983) #18 MAST1 (ENSCLAG00000012224) #19 RTBDN (ENSCLAG00000014391) #20 RNASEH2A (ENSCLAG00000014930) #21 PRDX2 (ENSCLAG00000013924) #22 JUNB (ENSCLAG00000018028) #23 HOOK2 (ENSCLAG00000012972) #24 BEST2 (ENSCLAG00000012820) #25 GET3 (ENSCLAG00000011393) #26 TRIR (ENSCLAG00000011164) #27 TNPO2 (ENSCLAG00000013442) #28 ENSCLAG00000011841 #30 FBXW9 (ENSCLAG00000012587) #29 DHPS (ENSCLAG00000012256) #31 WDR83 (ENSCLAG00000012198) #32 ENSCLAG00000011821 #33 MAN2B1 (ENSCLAG00000013086) #34 ZNF333 (ENSCLAG00000014959) NANP (ENSCLAG00000014668) NINL (ENSCLAG00000011605) Sciuridae ANCESTRAL SPECIES 20 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Eurasian red squirrel MODERN SPECIES 7 LYL1 (ENSSVLG00005018485) #9 NFIX (ENSSVLG00005018211) #10 DAND5 (ENSSVLG00005018136) GADD45GIP1 (ENSSVLG00005018098) #12 RAD23A (ENSSVLG00005018009) #11 CALR (ENSSVLG00005017951) #13 FARSA (ENSSVLG00005017880) #14 ENSSVLG00005017827 #15 GCDH (ENSSVLG00005017674) #16 KLF1 (ENSSVLG00005017619) #17 DNASE2 (ENSSVLG00005017585) #18 MAST1 (ENSSVLG00005017111) #19 RTBDN (ENSSVLG00005016997) #20 RNASEH2A (ENSSVLG00005016950) #21 THSD8 (ENSSVLG00005016905) PRDX2 (ENSSVLG00005016837) #22 JUNB (ENSSVLG00005025317) #23 HOOK2 (ENSSVLG00005025297) #24 BEST2 (ENSSVLG00005025274) #25 ENSSVLG00005025252 #26 TRIR (ENSSVLG00005025236) #27 TNPO2 (ENSSVLG00005025206) #28 FBXW9 (ENSSVLG00005025161) #29 ENSSVLG00005025134 #30 DHPS (ENSSVLG00005025110) #31 ENSSVLG00005025092 #32 ENSSVLG00005025070 #33 ENSSVLG00005025050 #34 ENSSVLG00005025025 ENSSVLG00005025001 ENSSVLG00005024969 Marmotini ANCESTRAL SPECIES 41 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 24 LYL1 (ENSMMMG00000021069) #9 NFIX (ENSMMMG00000021044) #10 DAND5 (ENSMMMG00000021038) GADD45GIP1 (ENSMMMG00000021032) #12 ENSMMMG00000021016 #11 CALR (ENSMMMG00000021010) #13 FARSA (ENSMMMG00000020996) #14 SYCE2 (ENSMMMG00000020981) #15 GCDH (ENSMMMG00000020963) #16 KLF1 (ENSMMMG00000020960) #17 DNASE2 (ENSMMMG00000020947) #18 MAST1 (ENSMMMG00000020911) #19 RTBDN (ENSMMMG00000020903) #20 RNASEH2A (ENSMMMG00000020879) #21 THSD8 (ENSMMMG00000020877) ENSMMMG00000020873 #22 JUNB (ENSMMMG00000020869) #23 HOOK2 (ENSMMMG00000020811) #24 BEST2 (ENSMMMG00000020790) #25 GET3 (ENSMMMG00000020781) #26 TRIR (ENSMMMG00000020777) #27 TNPO2 (ENSMMMG00000020726) #28 FBXW9 (ENSMMMG00000020717) #29 ENSMMMG00000020713 #30 DHPS (ENSMMMG00000020706) #31 WDR83 (ENSMMMG00000020697) #32 WDR83OS (ENSMMMG00000020687) #33 MAN2B1 (ENSMMMG00000020653) #34 ENSMMMG00000020633 ENSMMMG00000020539 ACP5 (ENSMMMG00000020512) Alpin marmot MODERN SPECIES 94 ENSMMMG00000023507 ENSMMMG00000023510 ENSMMMG00000023512 ENSMMMG00000023513 ENSMMMG00000023515 DEFB1 (ENSMMMG00000023517) XKR5 (ENSMMMG00000023518) AGPAT5 (ENSMMMG00000023520) MCPH1 (ENSMMMG00000023526) ANGPT2 (ENSMMMG00000023533) CSMD1 (ENSMMMG00000023540) MYOM2 (ENSMMMG00000023553) ARHGEF10 (ENSMMMG00000023568) CLN8 (ENSMMMG00000023580) DLGAP2 (ENSMMMG00000023583) ENSMMMG00000023607 #22 ENSMMMG00000023609 TDRP (ENSMMMG00000023610) FBXO25 (ENSMMMG00000023611) Marmotini_b ANCESTRAL SPECIES 40 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.b ENSGT00950000182755.b.a.a.a.a.a.a.b ENSGT00390000016735 Squirrel DUPLICATION Squirrel MODERN SPECIES 259 TRMT1 (ENSSTOG00000012531) #8 LYL1 (ENSSTOG00000028401) #9 NFIX (ENSSTOG00000007848) #10 DAND5 (ENSSTOG00000016420) GADD45GIP1 (ENSSTOG00000016419) #12 RAD23A (ENSSTOG00000024117) #11 CALR (ENSSTOG00000008774) #13 FARSA (ENSSTOG00000008748) #14 SYCE2 (ENSSTOG00000008737) #15 GCDH (ENSSTOG00000008724) #16 KLF1 (ENSSTOG00000021956) #17 DNASE2 (ENSSTOG00000008712) #18 MAST1 (ENSSTOG00000008668) #19 Rtbdn (ENSSTOG00000006228) #20 RNASEH2A (ENSSTOG00000006224) #21 ENSSTOG00000025862 #22 JUNB (ENSSTOG00000031929) #23 HOOK2 (ENSSTOG00000011709) #24 BEST2 (ENSSTOG00000019471) #25 GET3 (ENSSTOG00000006992) #26 TRIR (ENSSTOG00000006978) #27 TNPO2 (ENSSTOG00000006952) #28 FBXW9 (ENSSTOG00000006921) #29 ENSSTOG00000030269 #30 DHPS (ENSSTOG00000006900) #31 WDR83 (ENSSTOG00000006883) #32 WDR83OS (ENSSTOG00000006874) #33 MAN2B1 (ENSSTOG00000029598) #34 ENSSTOG00000034910 ZNF709 (ENSSTOG00000029196) ACP5 (ENSSTOG00000003699) Squirrel MODERN SPECIES 122 NDC1 (ENSSTOG00000002596) GLIS1 (ENSSTOG00000024363) DMRTB1 (ENSSTOG00000007187) ENSSTOG00000020556 LRP8 (ENSSTOG00000001256) MAGOH (ENSSTOG00000001253) CPT2 (ENSSTOG00000016415) SLC1A7 (ENSSTOG00000020054) PODN (ENSSTOG00000010433) SCP2 (ENSSTOG00000022003) ECHDC2 (ENSSTOG00000010402) ZYG11A (ENSSTOG00000021997) ZYG11B (ENSSTOG00000008067) COA7 (ENSSTOG00000008063) SHISAL2A (ENSSTOG00000026416) ENSSTOG00000023745 #22 GPX7 (ENSSTOG00000023247) TUT4 (ENSSTOG00000015611) PRPF38A (ENSSTOG00000015610) ORC1 (ENSSTOG00000015591) CC2D1B (ENSSTOG00000015584) ZFYVE9 (ENSSTOG00000026884) ENSSTOG00000025134 BTF3L4 (ENSSTOG00000006129) TXNDC12 (ENSSTOG00000006093) ENSSTOG00000032439 RAB3B (ENSSTOG00000016470) NRDC (ENSSTOG00000000706) ENSSTOG00000000692 ENSSTOG00000022882 ##13 ENSSTOG00000023598 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 217 ENSUPAG00010008329 NFIX (ENSUPAG00010008230) #10 DAND5 (ENSUPAG00010008227) GADD45GIP1 (ENSUPAG00010008222) #12 RAD23A (ENSUPAG00010008197) #11 CALR (ENSUPAG00010008184) #13 FARSA (ENSUPAG00010008158) #14 SYCE2 (ENSUPAG00010008135) #15 GCDH (ENSUPAG00010008102) #16 KLF1 (ENSUPAG00010008092) #17 DNASE2 (ENSUPAG00010008053) #18 MAST1 (ENSUPAG00010007994) #19 RTBDN (ENSUPAG00010007981) #20 RNASEH2A (ENSUPAG00010007909) #21 THSD8 (ENSUPAG00010007901) ENSUPAG00010007882 #22 JUNB (ENSUPAG00010007878) #23 HOOK2 (ENSUPAG00010007823) #24 BEST2 (ENSUPAG00010007798) #25 GET3 (ENSUPAG00010007783) #26 TRIR (ENSUPAG00010007779) #27 TNPO2 (ENSUPAG00010007721) #28 FBXW9 (ENSUPAG00010007705) #29 ENSUPAG00010007702 #30 DHPS (ENSUPAG00010007686) #31 WDR83 (ENSUPAG00010007673) #32 WDR83OS (ENSUPAG00010007669) #33 MAN2B1 (ENSUPAG00010007651) #34 ENSUPAG00010007643 ENSUPAG00010007642 ENSUPAG00010007638 Arctic ground squirrel MODERN SPECIES 21 GLIS1 (ENSUPAG00010021514) DMRTB1 (ENSUPAG00010021527) ENSUPAG00010021531 LRP8 (ENSUPAG00010021536) MAGOH (ENSUPAG00010021633) CZIB (ENSUPAG00010021635) CPT2 (ENSUPAG00010021639) SLC1A7 (ENSUPAG00010021645) PODN (ENSUPAG00010021656) SCP2 (ENSUPAG00010021667) ECHDC2 (ENSUPAG00010021676) ZYG11A (ENSUPAG00010021681) ZYG11B (ENSUPAG00010021696) COA7 (ENSUPAG00010021697) SHISAL2A (ENSUPAG00010021700) ENSUPAG00010021701 #22 GPX7 (ENSUPAG00010021704) TUT4 (ENSUPAG00010021705) PRPF38A (ENSUPAG00010021729) ORC1 (ENSUPAG00010021734) CC2D1B (ENSUPAG00010021747) ZFYVE9 (ENSUPAG00010021759) ENSUPAG00010021795 BTF3L4 (ENSUPAG00010021796) TXNDC12 (ENSUPAG00010021798) RAB3B (ENSUPAG00010021800) NRDC (ENSUPAG00010021802) ENSUPAG00010021819 ENSUPAG00010022352 ##13 EPS15 (ENSUPAG00010022360) TTC39A (ENSUPAG00010022367) Rodentia_B ANCESTRAL SPECIES 43 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b Kangaroo rat MODERN SPECIES 502 Cacna1a (ENSDORG00000010862) Nacc1 (ENSDORG00000003988) #7 Trmt1 (ENSDORG00000014298) #8 Lyl1 (ENSDORG00000029482) #9 Nfix (ENSDORG00000012235) #10 Dand5 (ENSDORG00000007059) Rad23a (ENSDORG00000010116) #11 Calr (ENSDORG00000010117) #13 Farsa (ENSDORG00000010118) #14 Syce2 (ENSDORG00000009022) #15 Gcdh (ENSDORG00000009020) #16 Klf1 (ENSDORG00000009018) #17 Dnase2a (ENSDORG00000009016) #18 ENSDORG00000009013 #19 Rnaseh2a (ENSDORG00000009008) #21 Prdx2 (ENSDORG00000009005) #22 Hook2 (ENSDORG00000015001) #24 Best2 (ENSDORG00000015000) #25 Get3 (ENSDORG00000014999) #26 Trir (ENSDORG00000014997) #27 Tnpo2 (ENSDORG00000014993) #28 Fbxw9 (ENSDORG00000014991) #29 Gng14 (ENSDORG00000027251) #30 ENSDORG00000014791 #31 Wdr83 (ENSDORG00000014787) #32 Wdr83os (ENSDORG00000025155) #33 ENSDORG00000028802 #34 Myomorpha ANCESTRAL SPECIES 52 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 234 ENSJJAG00000012119 Nacc1 (ENSJJAG00000000199) #7 Trmt1 (ENSJJAG00000017154) #8 Lyl1 (ENSJJAG00000015977) #9 Nfix (ENSJJAG00000012047) #10 Dand5 (ENSJJAG00000011222) Rad23a (ENSJJAG00000000606) #11 Calr (ENSJJAG00000000115) #13 Syce2 (ENSJJAG00000021380) #15 Gcdh (ENSJJAG00000018993) #16 Klf1 (ENSJJAG00000004209) #17 Dnase2a (ENSJJAG00000000087) #18 ENSJJAG00000020016 #19 ENSJJAG00000019577 Rnaseh2a (ENSJJAG00000017547) #21 ENSJJAG00000016489 #22 Junb (ENSJJAG00000012180) #23 Hook2 (ENSJJAG00000015256) #24 Best2 (ENSJJAG00000018238) #25 Get3 (ENSJJAG00000017121) #26 Trir (ENSJJAG00000016895) #27 Tnpo2 (ENSJJAG00000016820) #28 Fbxw9 (ENSJJAG00000019917) #29 Gng14 (ENSJJAG00000019778) #30 ENSJJAG00000019277 #31 Wdr83 (ENSJJAG00000015218) #32 Wdr83os (ENSJJAG00000020904) #33 ENSJJAG00000020733 #34 Lesser Egyptian jerboa MODERN SPECIES 51 Susd4 (ENSJJAG00000017970) Disp1 (ENSJJAG00000015868) Brox (ENSJJAG00000007298) Aida (ENSJJAG00000023815) ENSJJAG00000022254 Taf1a (ENSJJAG00000006299) Ptchd3 (ENSJJAG00000024292) ENSJJAG00000012961 Cr1l (ENSJJAG00000022966) ENSJJAG00000010379 ENSJJAG00000013299 Cd34 (ENSJJAG00000020811) Plxna2 (ENSJJAG00000017523) Camk1g (ENSJJAG00000006575) Lamb3 (ENSJJAG00000019254) ENSJJAG00000002823 #22 Hsd11b1 (ENSJJAG00000012713) ENSJJAG00000024101 ENSJJAG00000008116 A130010J15Rik (ENSJJAG00000009624) Irf6 (ENSJJAG00000023787) Utp25 (ENSJJAG00000024257) Syt14 (ENSJJAG00000020007) ENSJJAG00000015432 Hhat (ENSJJAG00000018726) Kcnh1 (ENSJJAG00000012317) Rcor3 (ENSJJAG00000013481) Traf5 (ENSJJAG00000023614) Muroidea ANCESTRAL SPECIES 60 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b Upper Galilee mountains blind mole rat MODERN SPECIES 1738 Trmt1 (ENSNGAG00000022486) #8 Lyl1 (ENSNGAG00000014673) #9 Nfix (ENSNGAG00000016724) #10 Dand5 (ENSNGAG00000021187) Gadd45gip1 (ENSNGAG00000022030) #12 Rad23a (ENSNGAG00000022186) #11 Calr (ENSNGAG00000011286) #13 Farsa (ENSNGAG00000018353) #14 Syce2 (ENSNGAG00000023150) #15 Gcdh (ENSNGAG00000022070) #16 Klf1 (ENSNGAG00000022931) #17 Dnase2a (ENSNGAG00000022792) #18 Mast1 (ENSNGAG00000002377) #19 Rtbdn (ENSNGAG00000011358) #20 Rnaseh2a (ENSNGAG00000017988) #21 Prdx2 (ENSNGAG00000022496) #22 Junb (ENSNGAG00000006939) #23 Hook2 (ENSNGAG00000022705) #24 Best2 (ENSNGAG00000014058) #25 Get3 (ENSNGAG00000015555) #26 Trir (ENSNGAG00000017973) #27 Tnpo2 (ENSNGAG00000000650) #28 ENSNGAG00000017579 #29 Gng14 (ENSNGAG00000018951) #30 ENSNGAG00000008057 #31 Wdr83 (ENSNGAG00000001041) #32 Wdr83os (ENSNGAG00000022509) #33 ENSNGAG00000022764 #34 ENSNGAG00000005762 ENSNGAG00000020517 Muroidea_A ANCESTRAL SPECIES 16 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00940000164424 ENSGT00390000007315 Cricetidae ANCESTRAL SPECIES 7 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00940000164424 ENSGT00390000007315 ENSGT00390000007370 Cricetinae ANCESTRAL SPECIES 40 ENSGT00940000159327 #7 ENSGT00530000063646.b #8 ENSGT00940000162404 #9 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00390000010768 #21 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 Golden Hamster MODERN SPECIES 877 Cacna1a (ENSMAUG00000008037) Nacc1 (ENSMAUG00000004663) #7 Trmt1 (ENSMAUG00000011134) #8 Nfix (ENSMAUG00000018106) #10 Dand5 (ENSMAUG00000020203) Gadd45gip1 (ENSMAUG00000001145) #12 Rad23a (ENSMAUG00000009327) #11 Farsa (ENSMAUG00000009188) #14 ENSMAUG00000000609 Syce2 (ENSMAUG00000015586) #15 Gcdh (ENSMAUG00000012276) #16 Klf1 (ENSMAUG00000021937) #17 Dnase2a (ENSMAUG00000012610) #18 Mast1 (ENSMAUG00000001337) #19 ENSMAUG00000021740 #21 Prdx2 (ENSMAUG00000005262) #22 Junb (ENSMAUG00000004233) #23 Hook2 (ENSMAUG00000013561) #24 Best2 (ENSMAUG00000010704) #25 Trir (ENSMAUG00000019320) #27 ENSMAUG00000007313 #28 Fbxw9 (ENSMAUG00000020565) #29 Gng14 (ENSMAUG00000001143) #30 Dhps (ENSMAUG00000001398) #31 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 347 Nacc1 (ENSCGRG00001016498) #7 Trmt1 (ENSCGRG00001022594) #8 Lyl1 (ENSCGRG00001020161) #9 Nfix (ENSCGRG00001013186) #10 Dand5 (ENSCGRG00001000588) Gadd45gip1 (ENSCGRG00001000298) #12 Rad23a (ENSCGRG00001020853) #11 Calr (ENSCGRG00001020181) #13 Farsa (ENSCGRG00001019769) #14 Syce2 (ENSCGRG00001013520) #15 Gcdh (ENSCGRG00001012582) #16 Klf1 (ENSCGRG00001011893) #17 Dnase2a (ENSCGRG00001011489) #18 Mast1 (ENSCGRG00001012818) #19 Rnaseh2a (ENSCGRG00001005021) #21 PRDX2 (ENSCGRG00001001765) #22 Junb (ENSCGRG00001015135) #23 Hook2 (ENSCGRG00001021145) #24 Best2 (ENSCGRG00001016555) #25 ASNA1 (ENSCGRG00001015158) #26 Trir (ENSCGRG00001014029) #27 Tnpo2 (ENSCGRG00001015917) #28 Fbxw9 (ENSCGRG00001014378) #29 Gng14 (ENSCGRG00001013712) #30 Dhps (ENSCGRG00001013178) #31 Wdr83 (ENSCGRG00001012536) #32 Wdr83os (ENSCGRG00001011873) #33 Man2b1 (ENSCGRG00001022182) #34 ENSCGRG00001021004 ENSCGRG00001020030 Chinese hamster chok1gshd MODERN SPECIES 1 Zmat4 (ENSCGRG00001016583) Sfrp1 (ENSCGRG00001017613) ENSCGRG00001020215 Gins4 (ENSCGRG00001016717) Gpat4 (ENSCGRG00001017830) Nkx6-3 (ENSCGRG00001018532) Ank1 (ENSCGRG00001021732) Kat6a (ENSCGRG00001019602) Ap3m2 (ENSCGRG00001020086) Plat (ENSCGRG00001021037) Ikbkb (ENSCGRG00001017718) Polb (ENSCGRG00001018504) Dkk4 (ENSCGRG00001018975) ENSCGRG00001019651 Slc20a2 (ENSCGRG00001007297) ENSCGRG00001008544 #22 Smim19 (ENSCGRG00001013840) Mrps31 (ENSCGRG00001014160) ENSCGRG00001004965 ENSCGRG00001015230 Tpte (ENSCGRG00001016028) Thsd1 (ENSCGRG00001021322) Vps36 (ENSCGRG00001022167) Ckap2 (ENSCGRG00001023062) Nek3 (ENSCGRG00001004635) Nek5 (ENSCGRG00001024708) ENSCGRG00001023830 Atp7b (ENSCGRG00001019712) Ccdc70 (ENSCGRG00001005698) Atg5 (ENSCGRG00001022743) Prdm1 (ENSCGRG00001023291) Cricetidae_B ANCESTRAL SPECIES 5 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828 #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00940000164424 ENSGT00390000007315 ENSGT00390000007370 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 98 Cd209a (ENSMOCG00000013815) Clec4g (ENSMOCG00000007606) ENSMOCG00000009634 Dand5 (ENSMOCG00000006477) Gadd45gip1 (ENSMOCG00000017223) #12 Rad23a (ENSMOCG00000008410) #11 Calr (ENSMOCG00000003128) #13 Farsa (ENSMOCG00000011399) #14 Syce2 (ENSMOCG00000016839) #15 Gcdh (ENSMOCG00000005123) #16 Klf1 (ENSMOCG00000015689) #17 Dnase2a (ENSMOCG00000001379) #18 Mast1 (ENSMOCG00000015813) #19 Rtbdn (ENSMOCG00000002540) #20 Rnaseh2a (ENSMOCG00000017408) #21 ENSMOCG00000020752 #22 Junb (ENSMOCG00000003238) #23 Hook2 (ENSMOCG00000014258) #24 Best2 (ENSMOCG00000006958) #25 Get3 (ENSMOCG00000002658) #26 Trir (ENSMOCG00000009371) #27 Tnpo2 (ENSMOCG00000016489) #28 ENSMOCG00000003557 #29 Gng14 (ENSMOCG00000002530) #30 Dhps (ENSMOCG00000020268) #31 Wdr83 (ENSMOCG00000015572) #32 Wdr83os (ENSMOCG00000000084) #33 Man2b1 (ENSMOCG00000019337) #34 ENSMOCG00000006321 Vps35 (ENSMOCG00000002997) Orc6 (ENSMOCG00000020756) Prairie vole MODERN SPECIES 15 Gosr1 (ENSMOCG00000011008) Cpd (ENSMOCG00000011977) ENSMOCG00000008686 Blmh (ENSMOCG00000007175) Slc6a4 (ENSMOCG00000004407) Nsrp1 (ENSMOCG00000019716) ENSMOCG00000016597 Efcab5 (ENSMOCG00000006093) ENSMOCG00000006899 Coro6 (ENSMOCG00000013111) Ankrd13b (ENSMOCG00000008806) Git1 (ENSMOCG00000011144) Trp53i13 (ENSMOCG00000006130) ENSMOCG00000012497 Abhd15 (ENSMOCG00000020292) ENSMOCG00000002833 #22 Taok1 (ENSMOCG00000007289) Nufip2 (ENSMOCG00000022086) Cryba1 (ENSMOCG00000009961) ENSMOCG00000002378 Myo18a (ENSMOCG00000022942) Pipox (ENSMOCG00000020266) Sez6 (ENSMOCG00000022144) Phf12 (ENSMOCG00000009540) Dhrs13 (ENSMOCG00000003764) Flot2 (ENSMOCG00000002050) Eral1 (ENSMOCG00000022786) Fam222b (ENSMOCG00000002697) Traf4 (ENSMOCG00000022716) Nek8 (ENSMOCG00000005323) Tlcd1 (ENSMOCG00000022875) Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000029305 Nfix (ENSPEMG00000011765) #10 Dand5 (ENSPEMG00000017061) Gadd45gip1 (ENSPEMG00000011904) #12 Rad23a (ENSPEMG00000006140) #11 Calr (ENSPEMG00000001949) #13 Farsa (ENSPEMG00000012560) #14 Syce2 (ENSPEMG00000016357) #15 Gcdh (ENSPEMG00000009103) #16 Klf1 (ENSPEMG00000017635) #17 Dnase2a (ENSPEMG00000000677) #18 Mast1 (ENSPEMG00000010588) #19 Rtbdn (ENSPEMG00000024999) #20 Rnaseh2a (ENSPEMG00000018009) #21 Gm49661 (ENSPEMG00000029668) Prdx2 (ENSPEMG00000000538) #22 Junb (ENSPEMG00000006961) #23 Hook2 (ENSPEMG00000009962) #24 Best2 (ENSPEMG00000015867) #25 Get3 (ENSPEMG00000016543) #26 Trir (ENSPEMG00000016449) #27 Tnpo2 (ENSPEMG00000018702) #28 Fbxw9 (ENSPEMG00000017063) #29 Gng14 (ENSPEMG00000029438) #30 Dhps (ENSPEMG00000019124) #31 Wdr83 (ENSPEMG00000014294) #32 Wdr83os (ENSPEMG00000025345) #33 ENSPEMG00000025750 ENSPEMG00000026081 ENSPEMG00000025354 Or7c19 (ENSPEMG00000024814) Murinae DUPLICATION Murinae DUPLICATION Murinae ANCESTRAL SPECIES 15 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828.h #22 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00940000164424 ENSGT00390000007315 Mus ANCESTRAL SPECIES 6 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828.h #22 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00940000164424 ENSGT00390000007315 Mus_A ANCESTRAL SPECIES 8 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121.i #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00940000164424 ENSGT00390000007315 Mus_B ANCESTRAL SPECIES 6 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121.i #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00940000164424 ENSGT00390000007315 Mouse MODERN SPECIES 17 Nfix (ENSMUSG00000001911) #10 Lyl1 (ENSMUSG00000034041) #9 Dand5 (ENSMUSG00000053226) Gadd45gip1 (ENSMUSG00000033751) #12 Rad23a (ENSMUSG00000003813) #11 Calr (ENSMUSG00000003814) #13 Farsa (ENSMUSG00000003808) #14 Syce2 (ENSMUSG00000003824) #15 Gcdh (ENSMUSG00000003809) #16 Klf1 (ENSMUSG00000054191) #17 Dnase2a (ENSMUSG00000003812) #18 Mast1 (ENSMUSG00000053693) #19 Rtbdn (ENSMUSG00000048617) #20 Rnaseh2a (ENSMUSG00000052926) #21 Gm49661 (ENSMUSG00000111184) Prdx2 (ENSMUSG00000005161) #22 Junb (ENSMUSG00000052837) #23 Hook2 (ENSMUSG00000052566) #24 Best2 (ENSMUSG00000052819) #25 Get3 (ENSMUSG00000052456) #26 Trir (ENSMUSG00000041203) #27 Tnpo2 (ENSMUSG00000031691) #28 Fbxw9 (ENSMUSG00000008167) #29 Gng14 (ENSMUSG00000095845) #30 Dhps (ENSMUSG00000060038) #31 Wdr83 (ENSMUSG00000005150) #32 Wdr83os (ENSMUSG00000059355) #33 Man2b1 (ENSMUSG00000005142) #34 Zfp791 (ENSMUSG00000074194) Cks1brt (ENSMUSG00000062687) Or7c19 (ENSMUSG00000051952) Mus_C ANCESTRAL SPECIES 5 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00940000157455.z ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828.h #22 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121.i #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b ENSGT00940000164424 ENSGT00390000007315 Steppe mouse MODERN SPECIES 2800 Nfix (ENSMSIG00000014176) #10 Dand5 (ENSMSIG00000014166) Gadd45gip1 (ENSMSIG00000014154) #12 Rad23a (ENSMSIG00000014128) #11 ENSMSIG00000014123 #13 ENSMSIG00000014114 Farsa (ENSMSIG00000014035) #14 Syce2 (ENSMSIG00000013998) #15 Gcdh (ENSMSIG00000013969) #16 Klf1 (ENSMSIG00000013957) #17 Dnase2a (ENSMSIG00000013905) #18 ENSMSIG00000013886 #19 Rtbdn (ENSMSIG00000013845) #20 Rnaseh2a (ENSMSIG00000013788) #21 Gm49661 (ENSMSIG00000013769) Prdx2 (ENSMSIG00000013681) #22 Junb (ENSMSIG00000013671) #23 Hook2 (ENSMSIG00000013603) #24 Get3 (ENSMSIG00000013568) #26 Trir (ENSMSIG00000013540) #27 Tnpo2 (ENSMSIG00000013409) #28 Fbxw9 (ENSMSIG00000013376) #29 Gng14 (ENSMSIG00000013367) #30 Dhps (ENSMSIG00000013355) #31 Wdr83 (ENSMSIG00000013337) #32 Wdr83os (ENSMSIG00000013323) #33 Man2b1 (ENSMSIG00000013254) #34 ENSMSIG00000013245 Zfp791 (ENSMSIG00000013223) ENSMSIG00000013214 Cks1brt (ENSMSIG00000013203) Ryukyu mouse MODERN SPECIES 17 Nfix (MGP_CAROLIEiJ_G0031305) #10 Lyl1 (MGP_CAROLIEiJ_G0031306) #9 MGP_CAROLIEiJ_G0031307 Dand5 (MGP_CAROLIEiJ_G0031308) Gadd45gip1 (MGP_CAROLIEiJ_G0031309) #12 Rad23a (MGP_CAROLIEiJ_G0031310) #11 Calr (MGP_CAROLIEiJ_G0031311) #13 Farsa (MGP_CAROLIEiJ_G0031312) #14 Syce2 (MGP_CAROLIEiJ_G0031313) #15 Gcdh (MGP_CAROLIEiJ_G0031314) #16 Klf1 (MGP_CAROLIEiJ_G0031315) #17 Dnase2a (MGP_CAROLIEiJ_G0031316) #18 Mast1 (MGP_CAROLIEiJ_G0031317) #19 Rtbdn (MGP_CAROLIEiJ_G0031318) #20 MGP_CAROLIEiJ_G0031319 #21 Prdx2 (MGP_CAROLIEiJ_G0031320) #22 Junb (MGP_CAROLIEiJ_G0031321) #23 Hook2 (MGP_CAROLIEiJ_G0031322) #24 Best2 (MGP_CAROLIEiJ_G0031323) #25 Get3 (MGP_CAROLIEiJ_G0031324) #26 Trir (MGP_CAROLIEiJ_G0031325) #27 Tnpo2 (MGP_CAROLIEiJ_G0031326) #28 Fbxw9 (MGP_CAROLIEiJ_G0031327) #29 Gng14 (MGP_CAROLIEiJ_G0031328) #30 Dhps (MGP_CAROLIEiJ_G0031329) #31 Wdr83 (MGP_CAROLIEiJ_G0031330) #32 Wdr83os (MGP_CAROLIEiJ_G0031331) #33 Man2b1 (MGP_CAROLIEiJ_G0031332) #34 Zfp791 (MGP_CAROLIEiJ_G0031333) Or7c19 (MGP_CAROLIEiJ_G0031334) Vps35 (MGP_CAROLIEiJ_G0031335) Rat MODERN SPECIES 10 Trmt1 (ENSRNOG00000002914) #8 Lyl1 (ENSRNOG00000002950) #9 Nfix (ENSRNOG00000002983) #10 Dand5 (ENSRNOG00000033368) Gadd45gip1 (ENSRNOG00000003011) #12 Rad23a (ENSRNOG00000003026) #11 Calr (ENSRNOG00000003029) #13 Farsa (ENSRNOG00000003149) #14 Gcdh (ENSRNOG00000003307) #16 Klf1 (ENSRNOG00000003443) #17 Dnase2 (ENSRNOG00000023830) #18 MAST1 (ENSRNOG00000003469) #19 Rtbdn (ENSRNOG00000043215) #20 Rnaseh2a (ENSRNOG00000068063) #21 Thsd8 (ENSRNOG00000003504) Prdx2 (ENSRNOG00000003520) #22 Hook2 (ENSRNOG00000003682) #24 Best2 (ENSRNOG00000003737) #25 Get3 (ENSRNOG00000003747) #26 Trir (ENSRNOG00000003863) #27 Tnpo2 (ENSRNOG00000003970) #28 Fbxw9 (ENSRNOG00000004212) #29 Gng14 (ENSRNOG00000023899) #30 Dhps (ENSRNOG00000004219) #31 Wdr83 (ENSRNOG00000004287) #32 Man2b1 (ENSRNOG00000023910) #34 Zfp791 (ENSRNOG00000023920) LOC108348296 (ENSRNOG00000046751) ENSRNOG00000064909 LOC120098580 (ENSRNOG00000064578) ENSRNOG00000065746 Murinae ANCESTRAL SPECIES ENSGT00940000155828.g.b #22 Mus ANCESTRAL SPECIES ENSGT00940000155828.g.b #22 Mus_A ANCESTRAL SPECIES ENSGT00940000155828.g.b #22 Mus_B ANCESTRAL SPECIES ENSGT00940000155828.g.b #22 Mus_C ANCESTRAL SPECIES ENSGT00940000155828.g.b #22 Steppe mouse MODERN SPECIES 2989 Cntnap5b (ENSMSIG00000024827) ENSMSIG00000024893 #22 Murinae ANCESTRAL SPECIES 15 ENSGT00940000162404 #9 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828.h #22 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b Mus ANCESTRAL SPECIES 6 ENSGT00940000162404 #9 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828.h #22 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121 #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b Shrew mouse MODERN SPECIES 12 Nacc1 (MGP_PahariEiJ_G0022909) #7 Lyl1 (MGP_PahariEiJ_G0022911) #9 Nfix (MGP_PahariEiJ_G0022912) #10 Dand5 (MGP_PahariEiJ_G0022913) Gadd45gip1 (MGP_PahariEiJ_G0022914) #12 Rad23a (MGP_PahariEiJ_G0022915) #11 Calr (MGP_PahariEiJ_G0022916) #13 Farsa (MGP_PahariEiJ_G0022917) #14 Syce2 (MGP_PahariEiJ_G0022918) #15 Gcdh (MGP_PahariEiJ_G0022919) #16 Klf1 (MGP_PahariEiJ_G0022920) #17 Dnase2a (MGP_PahariEiJ_G0022921) #18 Mast1 (MGP_PahariEiJ_G0022922) #19 MGP_PahariEiJ_G0022923 #20 Rnaseh2a (MGP_PahariEiJ_G0022924) #21 MGP_PahariEiJ_G0022925 #22 Junb (MGP_PahariEiJ_G0022926) #23 Hook2 (MGP_PahariEiJ_G0022927) #24 Best2 (MGP_PahariEiJ_G0022928) #25 Get3 (MGP_PahariEiJ_G0022929) #26 Trir (MGP_PahariEiJ_G0022930) #27 Tnpo2 (MGP_PahariEiJ_G0022931) #28 Fbxw9 (MGP_PahariEiJ_G0022932) #29 Gng14 (MGP_PahariEiJ_G0022933) #30 Dhps (MGP_PahariEiJ_G0022934) #31 Wdr83 (MGP_PahariEiJ_G0022935) #32 Man2b1 (MGP_PahariEiJ_G0022936) #34 Zfp791 (MGP_PahariEiJ_G0022937) Or7c19 (MGP_PahariEiJ_G0022938) Vps35 (MGP_PahariEiJ_G0022939) Orc6 (MGP_PahariEiJ_G0022940) Mus_A ANCESTRAL SPECIES ENSGT00940000155828.h #22 Mus_B ANCESTRAL SPECIES ENSGT00940000155828.h #22 Mus_C ANCESTRAL SPECIES 5 ENSGT00860000135639 ENSGT00950000182916.a.b.a.a.a.b.b #10 ENSGT00530000063926.b ENSGT00390000013719 #12 ENSGT00390000012078.a.b #11 ENSGT00950000182915.b.b.a.a #13 ENSGT00940000157455.z ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856.d #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00950000183144.B #20 ENSGT00390000010768 #21 ENSGT00940000155828.h #22 ENSGT00870000137755 ENSGT00940000155828.g.a #22 ENSGT00940000161195 #23 ENSGT00940000160152 #24 ENSGT00940000161361 #25 ENSGT00390000003817 #26 ENSGT00390000012267 #27 ENSGT00940000156708.a.a #28 ENSGT00390000006806 #29 ENSGT01100000263497.E.a.a #30 ENSGT00390000008063 #31 ENSGT00940000159016 #32 ENSGT00390000002121.i #33 ENSGT01030000234638.b.a.a #34 ENSGT00950000182755.b.a.a.a.a.a.b.d.b Steppe mouse MODERN SPECIES 3168 Cbln2 (ENSMSIG00000024262) Neto1 (ENSMSIG00000024230) ENSMSIG00000024214 ENSMSIG00000024189 ENSMSIG00000024186 ENSMSIG00000024175 #22 Timm21 (ENSMSIG00000024148) Fbxo15 (ENSMSIG00000024100) Cyb5a (ENSMSIG00000024084) Gm17266 (ENSMSIG00000024036) ENSMSIG00000024020 Cndp2 (ENSMSIG00000023966) spretus MODERN SPECIES 17 Lyl1 (MGP_SPRETEiJ_G0032424) #9 MGP_SPRETEiJ_G0032425 Dand5 (MGP_SPRETEiJ_G0032426) Gadd45gip1 (MGP_SPRETEiJ_G0032427) #12 Rad23a (MGP_SPRETEiJ_G0032428) #11 Calr (MGP_SPRETEiJ_G0032429) #13 MGP_SPRETEiJ_G0032430 Farsa (MGP_SPRETEiJ_G0032431) #14 Syce2 (MGP_SPRETEiJ_G0032432) #15 Gcdh (MGP_SPRETEiJ_G0032433) #16 Klf1 (MGP_SPRETEiJ_G0032434) #17 Dnase2a (MGP_SPRETEiJ_G0032435) #18 Mast1 (MGP_SPRETEiJ_G0032436) #19 Rtbdn (MGP_SPRETEiJ_G0032437) #20 Rnaseh2a (MGP_SPRETEiJ_G0032438) #21 MGP_SPRETEiJ_G0032439 #22 Junb (MGP_SPRETEiJ_G0032440) #23 Hook2 (MGP_SPRETEiJ_G0032441) #24 Best2 (MGP_SPRETEiJ_G0032442) #25 Get3 (MGP_SPRETEiJ_G0032443) #26 Trir (MGP_SPRETEiJ_G0032444) #27 Tnpo2 (MGP_SPRETEiJ_G0032445) #28 Fbxw9 (MGP_SPRETEiJ_G0032446) #29 Gng14 (MGP_SPRETEiJ_G0032447) #30 Dhps (MGP_SPRETEiJ_G0032448) #31 Wdr83 (MGP_SPRETEiJ_G0032449) #32 Wdr83os (MGP_SPRETEiJ_G0032450) #33 Man2b1 (MGP_SPRETEiJ_G0032451) #34 Zfp791 (MGP_SPRETEiJ_G0032452) Or7c19 (MGP_SPRETEiJ_G0032453) Vps35 (MGP_SPRETEiJ_G0032454) Lagomorpha ANCESTRAL SPECIES 257 ENSGT00950000182915.b.b.a.a #13 ENSGT00390000006387 #14 ENSGT00390000004872 #15 ENSGT00940000158116 #16 ENSGT00940000161856 #17 ENSGT00390000002634.a #18 ENSGT00940000157700 #19 ENSGT00940000171026 ENSGT00390000010768 #21 ENSGT00940000155828 #22 Pika MODERN SPECIES 3130 CALR (ENSOPRG00000005026) #13 FARSA (ENSOPRG00000005004) #14 SYCE2 (ENSOPRG00000004989) #15 GCDH (ENSOPRG00000004974) #16 KLF1 (ENSOPRG00000004951) #17 DNASE2 (ENSOPRG00000004926) #18 MAST1 (ENSOPRG00000004857) #19 ENSOPRG00000004832 RNASEH2A (ENSOPRG00000004811) #21 PRDX2 (ENSOPRG00000004798) #22 Tree shrew MODERN SPECIES 3524 ENSTBEG00000012672 #22