Mus_A	ANCESTRAL SPECIES	18	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495	ENSGT00550000074968	ENSGT00940000161312	ENSGT00940000159985	ENSGT00390000002960	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A.u.b ##25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #31	ENSGT00530000064267 #32	ENSGT00940000154678.a.a #33	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i
Mus_B	ANCESTRAL SPECIES	18	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495	ENSGT00550000074968	ENSGT00940000161312	ENSGT00940000159985	ENSGT00390000002960	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A.u.a #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #31	ENSGT00530000064267 #32	ENSGT00940000154678.a.a #33	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495	ENSGT00550000074968	ENSGT00940000161312	ENSGT00940000159985	ENSGT00390000002960	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A.u.a #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #31	ENSGT00530000064267 #32	ENSGT00940000154678.a.a #33	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i
Steppe mouse	MODERN SPECIES	3075															Erg (ENSMSIG00000015868) #21	Ets2 (ENSMSIG00000015834) #22	Psmg1 (ENSMSIG00000015643) #23	Brwd1 (ENSMSIG00000015168) #24	ENSMSIG00000015102 #25	ENSMSIG00000015019 #26	Lca5l (ENSMSIG00000014966) #27	Sh3bgr (ENSMSIG00000014902) #28	B3galt5 (ENSMSIG00000014879) #29	Igsf5 (ENSMSIG00000014791) #30	Itgb2l (ENSMSIG00000014689) #31	ENSMSIG00000014678 #32	Dscam (ENSMSIG00000014580) #33
spretus	MODERN SPECIES	7	Cbr3 (MGP_SPRETEiJ_G0021887)	Dop1b (MGP_SPRETEiJ_G0021888)	Morc3 (MGP_SPRETEiJ_G0021889)	Chaf1b (MGP_SPRETEiJ_G0021890)	Cldn14 (MGP_SPRETEiJ_G0021891)	Sim2 (MGP_SPRETEiJ_G0021892)	Hlcs (MGP_SPRETEiJ_G0021893)	Ripply3 (MGP_SPRETEiJ_G0021894)	MGP_SPRETEiJ_G0021895	Ttc3 (MGP_SPRETEiJ_G0021896)	Vps26c (MGP_SPRETEiJ_G0021897)	Dyrk1a (MGP_SPRETEiJ_G0021898)	Kcnj6 (MGP_SPRETEiJ_G0021899)	Kcnj15 (MGP_SPRETEiJ_G0021900)	Erg (MGP_SPRETEiJ_G0021901) #21	Ets2 (MGP_SPRETEiJ_G0021902) #22	Psmg1 (MGP_SPRETEiJ_G0021903) #23	Hmgn1 (MGP_SPRETEiJ_G0021905) ##25	MGP_SPRETEiJ_G0021906 #26	Lca5l (MGP_SPRETEiJ_G0021907) #27	MGP_SPRETEiJ_G0021908 #28	B3galt5 (MGP_SPRETEiJ_G0021909) #29	Igsf5 (MGP_SPRETEiJ_G0021910) #30	Itgb2l (MGP_SPRETEiJ_G0021911) #31	MGP_SPRETEiJ_G0021912 #32	Dscam (MGP_SPRETEiJ_G0021913) #33	Bace2 (MGP_SPRETEiJ_G0021914)	MGP_SPRETEiJ_G0021915	Fam3b (MGP_SPRETEiJ_G0021916)	Tmprss2 (MGP_SPRETEiJ_G0021917)	Ripk4 (MGP_SPRETEiJ_G0021918)
Mouse	MODERN SPECIES	7	Cbr3 (ENSMUSG00000022947)	Dop1b (ENSMUSG00000022946)	Morc3 (ENSMUSG00000039456)	Chaf1b (ENSMUSG00000022945)	Cldn14 (ENSMUSG00000047109)	Sim2 (ENSMUSG00000062713)	Hlcs (ENSMUSG00000040820)	Ripply3 (ENSMUSG00000022941)	Pigp (ENSMUSG00000022940)	Ttc3 (ENSMUSG00000040785)	Vps26c (ENSMUSG00000022898)	Dyrk1a (ENSMUSG00000022897)	Kcnj6 (ENSMUSG00000043301)	Kcnj15 (ENSMUSG00000062609)	Erg (ENSMUSG00000040732) #21	Ets2 (ENSMUSG00000022895) #22	Psmg1 (ENSMUSG00000022913) #23	Brwd1 (ENSMUSG00000022914) #24	Hmgn1 (ENSMUSG00000040681) ##25	Get1 (ENSMUSG00000023147)	Lca5l (ENSMUSG00000045275) #27	Sh3bgr (ENSMUSG00000040666) #28	B3galt5 (ENSMUSG00000074892) #29	Igsf5 (ENSMUSG00000000159) #30	Gm49948 (ENSMUSG00000117081)	Itgb2l (ENSMUSG00000000157) #31	Pcp4 (ENSMUSG00000090223)	Dscam (ENSMUSG00000050272) #33	Bace2 (ENSMUSG00000040605)	Mx1 (ENSMUSG00000000386)	Fam3b (ENSMUSG00000022938)
Ryukyu mouse	MODERN SPECIES	7	Cbr3 (MGP_CAROLIEiJ_G0020981)	Dop1b (MGP_CAROLIEiJ_G0020982)	Morc3 (MGP_CAROLIEiJ_G0020983)	MGP_CAROLIEiJ_G0020984	Cldn14 (MGP_CAROLIEiJ_G0020985)	Sim2 (MGP_CAROLIEiJ_G0020986)	Hlcs (MGP_CAROLIEiJ_G0020987)	Ripply3 (MGP_CAROLIEiJ_G0020988)	MGP_CAROLIEiJ_G0020989	Ttc3 (MGP_CAROLIEiJ_G0020990)	Vps26c (MGP_CAROLIEiJ_G0020991)	Dyrk1a (MGP_CAROLIEiJ_G0020992)	Kcnj6 (MGP_CAROLIEiJ_G0020993)	Kcnj15 (MGP_CAROLIEiJ_G0020994)	Erg (MGP_CAROLIEiJ_G0020995) #21	Ets2 (MGP_CAROLIEiJ_G0020996) #22	Psmg1 (MGP_CAROLIEiJ_G0020997) #23	Brwd1 (MGP_CAROLIEiJ_G0020998) #24	MGP_CAROLIEiJ_G0020999 ##25	MGP_CAROLIEiJ_G0021000 #26	Lca5l (MGP_CAROLIEiJ_G0021001) #27	MGP_CAROLIEiJ_G0021002 #28	B3galt5 (MGP_CAROLIEiJ_G0021003) #29	Igsf5 (MGP_CAROLIEiJ_G0021004) #30	Itgb2l (MGP_CAROLIEiJ_G0021005) #31	MGP_CAROLIEiJ_G0021006 #32	Dscam (MGP_CAROLIEiJ_G0021007) #33	Bace2 (MGP_CAROLIEiJ_G0021008)	MGP_CAROLIEiJ_G0021009	Fam3b (MGP_CAROLIEiJ_G0021010)	MGP_CAROLIEiJ_G0008949