Murinae	ANCESTRAL SPECIES	13	ENSGT00940000162541 #7	ENSGT00390000016421.b.a #8	ENSGT00940000160495 #9	ENSGT00550000074968 #10	ENSGT00940000161312 #11	ENSGT00940000159985 #12	ENSGT00390000002960 #13	ENSGT00730000111429 #14	ENSGT00390000013771 #15	ENSGT00940000154465.C #16	ENSGT00950000183064.b #17	ENSGT00940000157408 #18	ENSGT01080000257365.b.a.b.a.a #19	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #32	ENSGT00530000064267	ENSGT00940000154678.a.a #34	ENSGT00940000159548 #35	ENSGT00940000155686.j #36	ENSGT00950000183004.a.b.a.b #37	ENSGT00940000155686.i ##36
Mus	ANCESTRAL SPECIES	13	ENSGT00940000162541 #7	ENSGT00390000016421.b.a #8	ENSGT00940000160495 #9	ENSGT00550000074968 #10	ENSGT00940000161312 #11	ENSGT00940000159985 #12	ENSGT00390000002960 #13	ENSGT00730000111429 #14	ENSGT00390000013771 #15	ENSGT00940000154465.C #16	ENSGT00950000183064.b #17	ENSGT00940000157408 #18	ENSGT01080000257365.b.a.b.a.a #19	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #32	ENSGT00530000064267	ENSGT00940000154678.a.a #34	ENSGT00940000159548 #35	ENSGT00940000155686.j #36	ENSGT00950000183004.a.b.a.b #37	ENSGT00940000155686.i ##36
Mus_A	ANCESTRAL SPECIES	18	ENSGT00940000162541 #7	ENSGT00390000016421.b.a #8	ENSGT00940000160495 #9	ENSGT00550000074968 #10	ENSGT00940000161312 #11	ENSGT00940000159985 #12	ENSGT00390000002960 #13	ENSGT00730000111429 #14	ENSGT00390000013771 #15	ENSGT00940000154465.C #16	ENSGT00950000183064.b #17	ENSGT00940000157408 #18	ENSGT01080000257365.b.a.b.a.a #19	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A.u.b ##25	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #32	ENSGT00530000064267	ENSGT00940000154678.a.a #34	ENSGT00940000159548 #35	ENSGT00940000155686.j #36	ENSGT00950000183004.a.b.a.b #37	ENSGT00940000155686.i ##36
Mus_B	ANCESTRAL SPECIES	18	ENSGT00940000162541 #7	ENSGT00390000016421.b.a #8	ENSGT00940000160495 #9	ENSGT00550000074968 #10	ENSGT00940000161312 #11	ENSGT00940000159985 #12	ENSGT00390000002960 #13	ENSGT00730000111429 #14	ENSGT00390000013771 #15	ENSGT00940000154465.C #16	ENSGT00950000183064.b #17	ENSGT00940000157408 #18	ENSGT01080000257365.b.a.b.a.a #19	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A.u.a ##25	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #32	ENSGT00530000064267	ENSGT00940000154678.a.a #34	ENSGT00940000159548 #35	ENSGT00940000155686.j #36	ENSGT00950000183004.a.b.a.b #37	ENSGT00940000155686.i ##36
Mouse	MODERN SPECIES	7	Cbr3 (ENSMUSG00000022947) #7	Dop1b (ENSMUSG00000022946) #8	Morc3 (ENSMUSG00000039456) #9	Chaf1b (ENSMUSG00000022945) #10	Cldn14 (ENSMUSG00000047109) #11	Sim2 (ENSMUSG00000062713) #12	Hlcs (ENSMUSG00000040820) #13	Ripply3 (ENSMUSG00000022941) #14	Pigp (ENSMUSG00000022940) #15	Ttc3 (ENSMUSG00000040785) #16	Vps26c (ENSMUSG00000022898) #17	Dyrk1a (ENSMUSG00000022897) #18	Kcnj6 (ENSMUSG00000043301) #19	Kcnj15 (ENSMUSG00000062609) #20	Erg (ENSMUSG00000040732) #21	Ets2 (ENSMUSG00000022895) #22	Psmg1 (ENSMUSG00000022913) #23	Brwd1 (ENSMUSG00000022914) #24	Hmgn1 (ENSMUSG00000040681) #25	Get1 (ENSMUSG00000023147) #26	Lca5l (ENSMUSG00000045275) #27	Sh3bgr (ENSMUSG00000040666) #28	B3galt5 (ENSMUSG00000074892) #29	Igsf5 (ENSMUSG00000000159) #30	Gm49948 (ENSMUSG00000117081) #31	Itgb2l (ENSMUSG00000000157) #32	Pcp4 (ENSMUSG00000090223) #33	Dscam (ENSMUSG00000050272) #34	Bace2 (ENSMUSG00000040605) #35	Mx1 (ENSMUSG00000000386) #36	Fam3b (ENSMUSG00000022938) #37
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000162541 #7	ENSGT00390000016421.b.a #8	ENSGT00940000160495 #9	ENSGT00550000074968 #10	ENSGT00940000161312 #11	ENSGT00940000159985 #12	ENSGT00390000002960 #13	ENSGT00730000111429 #14	ENSGT00390000013771 #15	ENSGT00940000154465.C #16	ENSGT00950000183064.b #17	ENSGT00940000157408 #18	ENSGT01080000257365.b.a.b.a.a #19	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A.u.a ##25	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #27	ENSGT00940000159847 #28	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT01090000259987.a.a.a.d #32	ENSGT00530000064267	ENSGT00940000154678.a.a #34	ENSGT00940000159548 #35	ENSGT00940000155686.j #36	ENSGT00950000183004.a.b.a.b #37	ENSGT00940000155686.i ##36
Steppe mouse	MODERN SPECIES	3075															Erg (ENSMSIG00000015868) #21	Ets2 (ENSMSIG00000015834) #22	Psmg1 (ENSMSIG00000015643) #23	Brwd1 (ENSMSIG00000015168) #24	ENSMSIG00000015102 ##25	ENSMSIG00000015019	Lca5l (ENSMSIG00000014966) #27	Sh3bgr (ENSMSIG00000014902) #28	B3galt5 (ENSMSIG00000014879) #29	Igsf5 (ENSMSIG00000014791) #30	Itgb2l (ENSMSIG00000014689) #32	ENSMSIG00000014678	Dscam (ENSMSIG00000014580) #34
spretus	MODERN SPECIES	7	Cbr3 (MGP_SPRETEiJ_G0021887) #7	Dop1b (MGP_SPRETEiJ_G0021888) #8	Morc3 (MGP_SPRETEiJ_G0021889) #9	Chaf1b (MGP_SPRETEiJ_G0021890) #10	Cldn14 (MGP_SPRETEiJ_G0021891) #11	Sim2 (MGP_SPRETEiJ_G0021892) #12	Hlcs (MGP_SPRETEiJ_G0021893) #13	Ripply3 (MGP_SPRETEiJ_G0021894) #14	MGP_SPRETEiJ_G0021895 #15	Ttc3 (MGP_SPRETEiJ_G0021896) #16	Vps26c (MGP_SPRETEiJ_G0021897) #17	Dyrk1a (MGP_SPRETEiJ_G0021898) #18	Kcnj6 (MGP_SPRETEiJ_G0021899) #19	Kcnj15 (MGP_SPRETEiJ_G0021900) #20	Erg (MGP_SPRETEiJ_G0021901) #21	Ets2 (MGP_SPRETEiJ_G0021902) #22	Psmg1 (MGP_SPRETEiJ_G0021903) #23	Hmgn1 (MGP_SPRETEiJ_G0021905) #25	MGP_SPRETEiJ_G0021906	Lca5l (MGP_SPRETEiJ_G0021907) #27	MGP_SPRETEiJ_G0021908 #28	B3galt5 (MGP_SPRETEiJ_G0021909) #29	Igsf5 (MGP_SPRETEiJ_G0021910) #30	Itgb2l (MGP_SPRETEiJ_G0021911) #32	MGP_SPRETEiJ_G0021912	Dscam (MGP_SPRETEiJ_G0021913) #34	Bace2 (MGP_SPRETEiJ_G0021914) #35	MGP_SPRETEiJ_G0021915 #36	Fam3b (MGP_SPRETEiJ_G0021916) #37	Tmprss2 (MGP_SPRETEiJ_G0021917)	Ripk4 (MGP_SPRETEiJ_G0021918)
Ryukyu mouse	MODERN SPECIES	7	Cbr3 (MGP_CAROLIEiJ_G0020981) #7	Dop1b (MGP_CAROLIEiJ_G0020982) #8	Morc3 (MGP_CAROLIEiJ_G0020983) #9	MGP_CAROLIEiJ_G0020984 #10	Cldn14 (MGP_CAROLIEiJ_G0020985) #11	Sim2 (MGP_CAROLIEiJ_G0020986) #12	Hlcs (MGP_CAROLIEiJ_G0020987) #13	Ripply3 (MGP_CAROLIEiJ_G0020988) #14	MGP_CAROLIEiJ_G0020989 #15	Ttc3 (MGP_CAROLIEiJ_G0020990) #16	Vps26c (MGP_CAROLIEiJ_G0020991) #17	Dyrk1a (MGP_CAROLIEiJ_G0020992) #18	Kcnj6 (MGP_CAROLIEiJ_G0020993) #19	Kcnj15 (MGP_CAROLIEiJ_G0020994) #20	Erg (MGP_CAROLIEiJ_G0020995) #21	Ets2 (MGP_CAROLIEiJ_G0020996) #22	Psmg1 (MGP_CAROLIEiJ_G0020997) #23	Brwd1 (MGP_CAROLIEiJ_G0020998) #24	MGP_CAROLIEiJ_G0020999 ##25	MGP_CAROLIEiJ_G0021000	Lca5l (MGP_CAROLIEiJ_G0021001) #27	MGP_CAROLIEiJ_G0021002 #28	B3galt5 (MGP_CAROLIEiJ_G0021003) #29	Igsf5 (MGP_CAROLIEiJ_G0021004) #30	Itgb2l (MGP_CAROLIEiJ_G0021005) #32	MGP_CAROLIEiJ_G0021006	Dscam (MGP_CAROLIEiJ_G0021007) #34	Bace2 (MGP_CAROLIEiJ_G0021008) #35	MGP_CAROLIEiJ_G0021009 #36	Fam3b (MGP_CAROLIEiJ_G0021010) #37	MGP_CAROLIEiJ_G0008949 ##36
Shrew mouse	MODERN SPECIES	3	Cbr3 (MGP_PahariEiJ_G0016686) #7	Dop1b (MGP_PahariEiJ_G0016687) #8	Morc3 (MGP_PahariEiJ_G0016688) #9	Chaf1b (MGP_PahariEiJ_G0016689) #10	Cldn14 (MGP_PahariEiJ_G0016690) #11	Sim2 (MGP_PahariEiJ_G0016691) #12	Hlcs (MGP_PahariEiJ_G0016692) #13	Ripply3 (MGP_PahariEiJ_G0016693) #14	MGP_PahariEiJ_G0016694 #15	MGP_PahariEiJ_G0016695 #16	Vps26c (MGP_PahariEiJ_G0016696) #17	Dyrk1a (MGP_PahariEiJ_G0016697) #18	Kcnj6 (MGP_PahariEiJ_G0016698) #19	Kcnj15 (MGP_PahariEiJ_G0016699) #20	Erg (MGP_PahariEiJ_G0016700) #21	Ets2 (MGP_PahariEiJ_G0016701) #22	Psmg1 (MGP_PahariEiJ_G0016702) #23	MGP_PahariEiJ_G0016703 #24	MGP_PahariEiJ_G0016704	MGP_PahariEiJ_G0016705	Lca5l (MGP_PahariEiJ_G0016706) #27	MGP_PahariEiJ_G0016707 #28	B3galt5 (MGP_PahariEiJ_G0016708) #29	Igsf5 (MGP_PahariEiJ_G0016709) #30	Itgb2l (MGP_PahariEiJ_G0016710) #32	MGP_PahariEiJ_G0016711	Dscam (MGP_PahariEiJ_G0016712) #34	Bace2 (MGP_PahariEiJ_G0016713) #35	MGP_PahariEiJ_G0016714 #36	Fam3b (MGP_PahariEiJ_G0016715) #37	MGP_PahariEiJ_G0008412 ##36
Rat	MODERN SPECIES	2	Ifitm7 (ENSRNOG00000021674)	Morc3 (ENSRNOG00000026236) #9	Chaf1b (ENSRNOG00000001692) #10	Cldn14 (ENSRNOG00000001691) #11	Sim2 (ENSRNOG00000054203) #12	Hlcs (ENSRNOG00000001686) #13	LOC108352309 (ENSRNOG00000065104)	Ripply3 (ENSRNOG00000001684) #14	Pigp (ENSRNOG00000039850) #15	Ttc3 (ENSRNOG00000001682) #16	Vps26c (ENSRNOG00000001681) #17	Dyrk1a (ENSRNOG00000001662) #18	Kcnj6 (ENSRNOG00000001658) #19	Kcnj15 (ENSRNOG00000062944) #20	Erg (ENSRNOG00000001652) #21	Ets2 (ENSRNOG00000001647) #22	Psmg1 (ENSRNOG00000001643) #23	Brwd1 (ENSRNOG00000001632) #24	ENSRNOG00000067977	Hmgn1 (ENSRNOG00000048226) #25	Get1 (ENSRNOG00000001629) #26	Lca5l (ENSRNOG00000028248) #27	Sh3bgr (ENSRNOG00000028238) #28	B3galt5 (ENSRNOG00000030983) #29	Igsf5 (ENSRNOG00000028216) #30	ENSRNOG00000063024	Pcp4 (ENSRNOG00000001628)	Dscam (ENSRNOG00000027992) #34	Bace2 (ENSRNOG00000001953) #35	Mx1 (ENSRNOG00000001959) #36	Fam3b (ENSRNOG00000001962) #37