Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #11	ENSGT00390000002960 #12	ENSGT00730000111429 #13	ENSGT00390000013771.bb #14	ENSGT00940000154465.C.w #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #19	ENSGT00940000160662 #20	ENSGT00940000160202 #22	ENSGT00500000044950 #24	ENSGT00950000183107.a.b.a #26	ENSGT00950000182802.A #28	ENSGT00390000008610.a.b.a.a.b #29	ENSGT00560000077266.b.m #31	ENSGT00940000159847 #32	ENSGT00940000160964 #33	ENSGT00940000163238 #34
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000020850 #7	CHAF1B (ENSHGLG00000010107) #8	CLDN14 (ENSHGLG00000009298) #9	ENSHGLG00000009709 #10	SIM2 (ENSHGLG00000008945) #11	HLCS (ENSHGLG00000008266) #12	ENSHGLG00000044887 #13	ENSHGLG00000044048 #14	TTC3 (ENSHGLG00000005139) #15	VPS26C (ENSHGLG00000005099) #16	DYRK1A (ENSHGLG00000004983) #17	KCNJ6 (ENSHGLG00000018429) #18	KCNJ15 (ENSHGLG00000046846) #19	ERG (ENSHGLG00000017640) #20	ENSHGLG00000042102 #21	ETS2 (ENSHGLG00000017830) #22	ENSHGLG00000045422 #23	PSMG1 (ENSHGLG00000017867) #24	ENSHGLG00000017831 #25	ENSHGLG00000042854 #26	ENSHGLG00000034155 #27	ENSHGLG00000013690 #28	GET1 (ENSHGLG00000012972) #29	ENSHGLG00000015714 #30	ENSHGLG00000044589 #31	SH3BGR (ENSHGLG00000015469) #32	ENSHGLG00000040175 #33	ENSHGLG00000015085 #34	ENSHGLG00000045024 #35	ENSHGLG00000014926 #36	ENSHGLG00000033972 #37
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #11	ENSGT00390000002960 #12	ENSGT00730000111429 #13	ENSGT00390000013771.bb #14	ENSGT00940000154465.C.w #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #19	ENSGT00940000160662 #20	ENSGT00940000160202 #22	ENSGT00500000044950 #24	ENSGT00950000183107.a.b.a #26	ENSGT00950000182802.A #28	ENSGT00390000008610.a.b.a.a.b #29	ENSGT00560000077266.b.m #31	ENSGT00940000159847 #32	ENSGT00940000160964 #33	ENSGT00940000163238 #34	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #11	ENSGT00390000002960 #12	ENSGT00730000111429 #13	ENSGT00390000013771.bb #14	ENSGT00940000154465.C.w #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #19	ENSGT00940000160662 #20	ENSGT00940000160202 #22	ENSGT00500000044950 #24	ENSGT00950000183107.a.b.a #26	ENSGT00950000182802.A #28	ENSGT00390000008610.a.b.a.a.b #29	ENSGT00560000077266.b.m #31	ENSGT00940000159847 #32	ENSGT00940000160964 #33	ENSGT00940000163238 #34	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x
Long-tailed chinchilla	MODERN SPECIES	114	MORC3 (ENSCLAG00000006634)	CHAF1B (ENSCLAG00000007456) #8	CLDN14 (ENSCLAG00000009427) #9	SIM2 (ENSCLAG00000012698) #11	HLCS (ENSCLAG00000004714) #12	ENSCLAG00000006237 #13	ENSCLAG00000006455 #15	ENSCLAG00000008569 #15	ENSCLAG00000009431 #15	VPS26C (ENSCLAG00000010591) #16	DYRK1A (ENSCLAG00000011834) #17	KCNJ6 (ENSCLAG00000005671) #18	ENSCLAG00000008450	KCNJ15 (ENSCLAG00000007017) #19	ERG (ENSCLAG00000005608) #20	ETS2 (ENSCLAG00000005803) #22	PSMG1 (ENSCLAG00000006759) #24	ENSCLAG00000004395 #26	HMGN1 (ENSCLAG00000005744) #28	GET1 (ENSCLAG00000005886) #29	SH3BGR (ENSCLAG00000008599) #32	ENSCLAG00000008933	B3GALT5 (ENSCLAG00000009203) #33	ENSCLAG00000006218 #34	ENSCLAG00000008829	RRP1B (ENSCLAG00000005622)	HSF2BP (ENSCLAG00000006525)	SIK1 (ENSCLAG00000004717)	CRYAA (ENSCLAG00000008715)	U2AF1 (ENSCLAG00000009589)	CBS (ENSCLAG00000012158)
Degu	MODERN SPECIES	86						PIGP (ENSODEG00000011154) #14	ENSODEG00000012435 #15	ENSODEG00000012671 #15	VPS26C (ENSODEG00000011654) #16	ENSODEG00000019985	DYRK1A (ENSODEG00000011707) #17	KCNJ6 (ENSODEG00000011396) #18	ENSODEG00000011894	KCNJ15 (ENSODEG00000012281) #19	ERG (ENSODEG00000011796) #20	ETS2 (ENSODEG00000012054) #22	PSMG1 (ENSODEG00000013481) #24	ENSODEG00000012050 #26	ENSODEG00000011845 #26	GET1 (ENSODEG00000011999) #29	LCA5L (ENSODEG00000012419) #31	SH3BGR (ENSODEG00000013522) #32	ENSODEG00000013679	ENSODEG00000012206	ENSODEG00000013785 #34	RRP1B (ENSODEG00000013177)	HSF2BP (ENSODEG00000011763)	SIK1 (ENSODEG00000012072)	CRYAA (ENSODEG00000014166)	U2AF1 (ENSODEG00000014749)	CBS (ENSODEG00000012996)
Guinea pig	MODERN SPECIES	90	CBR3 (ENSCPOG00000031877)	DOP1B (ENSCPOG00000013877)	MORC3 (ENSCPOG00000006321)	CHAF1B (ENSCPOG00000006333) #8	CLDN14 (ENSCPOG00000007601) #9	SIM2 (ENSCPOG00000023156) #11	HLCS (ENSCPOG00000007955) #12	ENSCPOG00000007156 #14	ENSCPOG00000032684 ##15	ENSCPOG00000007158 #15	VPS26C (ENSCPOG00000013144) #16	DYRK1A (ENSCPOG00000037211) #17	KCNJ6 (ENSCPOG00000009568) #18	KCNJ15 (ENSCPOG00000019502) #19	ERG (ENSCPOG00000007484) #20	ETS2 (ENSCPOG00000015014) #22	PSMG1 (ENSCPOG00000027117) #24	ENSCPOG00000010784 #26	ENSCPOG00000039624 #26	HMGN1 (ENSCPOG00000033135) #28	GET1 (ENSCPOG00000040238) #29	LCA5L (ENSCPOG00000021836) #31	SH3BGR (ENSCPOG00000003488) #32	B3GALT5 (ENSCPOG00000035318) #33	ENSCPOG00000004718 #34	RRP1B (ENSCPOG00000002396)	HSF2BP (ENSCPOG00000002394)	SIK1 (ENSCPOG00000026214)	Cryaa (ENSCPOG00000004350)	U2AF1 (ENSCPOG00000004893)	CBS (ENSCPOG00000007817)