Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #10	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771	ENSGT00940000154465.C #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000185720	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b	ENSGT00940000159847 #27	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #10	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771.bb	ENSGT00940000154465.C.w #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b.m	ENSGT00940000159847 #27	ENSGT00940000160964 #29	ENSGT00940000163238 #30
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #10	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771.bb	ENSGT00940000154465.C.w #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b.m	ENSGT00940000159847 #27	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT00390000011821.a #32	ENSGT00390000008490 #33	ENSGT00940000154989 #34	ENSGT00940000160159 #35	ENSGT00950000183152.B.c.a #36	ENSGT00510000047027 #37	ENSGT00940000159505.x
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #10	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771.bb	ENSGT00940000154465.C.w #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b.m	ENSGT00940000159847 #27	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT00390000011821.a #32	ENSGT00390000008490 #33	ENSGT00940000154989 #34	ENSGT00940000160159 #35	ENSGT00950000183152.B.c.a #36	ENSGT00510000047027 #37	ENSGT00940000159505.x
Long-tailed chinchilla	MODERN SPECIES	114	MORC3 (ENSCLAG00000006634) #7	CHAF1B (ENSCLAG00000007456) #8	CLDN14 (ENSCLAG00000009427) #9	SIM2 (ENSCLAG00000012698) #10	HLCS (ENSCLAG00000004714) #11	ENSCLAG00000006237 #12	ENSCLAG00000006455 #13	ENSCLAG00000008569 #14	ENSCLAG00000009431 #15	VPS26C (ENSCLAG00000010591) #16	DYRK1A (ENSCLAG00000011834) #17	KCNJ6 (ENSCLAG00000005671) #18	ENSCLAG00000008450 #19	KCNJ15 (ENSCLAG00000007017) #20	ERG (ENSCLAG00000005608) #21	ETS2 (ENSCLAG00000005803) #22	PSMG1 (ENSCLAG00000006759) #23	ENSCLAG00000004395 #24	HMGN1 (ENSCLAG00000005744) #25	GET1 (ENSCLAG00000005886) #26	SH3BGR (ENSCLAG00000008599) #27	ENSCLAG00000008933 #28	B3GALT5 (ENSCLAG00000009203) #29	ENSCLAG00000006218 #30	ENSCLAG00000008829 #31	RRP1B (ENSCLAG00000005622) #32	HSF2BP (ENSCLAG00000006525) #33	SIK1 (ENSCLAG00000004717) #34	CRYAA (ENSCLAG00000008715) #35	U2AF1 (ENSCLAG00000009589) #36	CBS (ENSCLAG00000012158) #37
Degu	MODERN SPECIES	86						PIGP (ENSODEG00000011154)	ENSODEG00000012435 #15	ENSODEG00000012671 #15	VPS26C (ENSODEG00000011654) #16	ENSODEG00000019985	DYRK1A (ENSODEG00000011707) #17	KCNJ6 (ENSODEG00000011396) #18	ENSODEG00000011894	KCNJ15 (ENSODEG00000012281) #20	ERG (ENSODEG00000011796) #21	ETS2 (ENSODEG00000012054) #22	PSMG1 (ENSODEG00000013481) #23	ENSODEG00000012050 #24	ENSODEG00000011845 #24	GET1 (ENSODEG00000011999) #26	LCA5L (ENSODEG00000012419)	SH3BGR (ENSODEG00000013522) #27	ENSODEG00000013679	ENSODEG00000012206	ENSODEG00000013785 #30	RRP1B (ENSODEG00000013177) #32	HSF2BP (ENSODEG00000011763) #33	SIK1 (ENSODEG00000012072) #34	CRYAA (ENSODEG00000014166) #35	U2AF1 (ENSODEG00000014749) #36	CBS (ENSODEG00000012996) #37
Guinea pig	MODERN SPECIES	90	CBR3 (ENSCPOG00000031877)	DOP1B (ENSCPOG00000013877)	MORC3 (ENSCPOG00000006321) #7	CHAF1B (ENSCPOG00000006333) #8	CLDN14 (ENSCPOG00000007601) #9	SIM2 (ENSCPOG00000023156) #10	HLCS (ENSCPOG00000007955) #11	ENSCPOG00000007156	ENSCPOG00000032684 ##15	ENSCPOG00000007158 #15	VPS26C (ENSCPOG00000013144) #16	DYRK1A (ENSCPOG00000037211) #17	KCNJ6 (ENSCPOG00000009568) #18	KCNJ15 (ENSCPOG00000019502) #20	ERG (ENSCPOG00000007484) #21	ETS2 (ENSCPOG00000015014) #22	PSMG1 (ENSCPOG00000027117) #23	ENSCPOG00000010784 #24	ENSCPOG00000039624 #24	HMGN1 (ENSCPOG00000033135) #25	GET1 (ENSCPOG00000040238) #26	LCA5L (ENSCPOG00000021836)	SH3BGR (ENSCPOG00000003488) #27	B3GALT5 (ENSCPOG00000035318) #29	ENSCPOG00000004718 #30	RRP1B (ENSCPOG00000002396) #32	HSF2BP (ENSCPOG00000002394) #33	SIK1 (ENSCPOG00000026214) #34	Cryaa (ENSCPOG00000004350) #35	U2AF1 (ENSCPOG00000004893) #36	CBS (ENSCPOG00000007817) #37
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000020850	CHAF1B (ENSHGLG00000010107) #8	CLDN14 (ENSHGLG00000009298) #9	ENSHGLG00000009709	SIM2 (ENSHGLG00000008945) #10	HLCS (ENSHGLG00000008266) #11	ENSHGLG00000044887 #12	ENSHGLG00000044048	TTC3 (ENSHGLG00000005139) #15	VPS26C (ENSHGLG00000005099) #16	DYRK1A (ENSHGLG00000004983) #17	KCNJ6 (ENSHGLG00000018429) #18	KCNJ15 (ENSHGLG00000046846) #20	ERG (ENSHGLG00000017640) #21	ENSHGLG00000042102	ETS2 (ENSHGLG00000017830) #22	ENSHGLG00000045422	PSMG1 (ENSHGLG00000017867) #23	ENSHGLG00000017831 #24	ENSHGLG00000042854 #24	ENSHGLG00000034155	ENSHGLG00000013690 #25	GET1 (ENSHGLG00000012972) #26	ENSHGLG00000015714	ENSHGLG00000044589	SH3BGR (ENSHGLG00000015469) #27	ENSHGLG00000040175 #29	ENSHGLG00000015085 #30	ENSHGLG00000045024	ENSHGLG00000014926	ENSHGLG00000033972
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00940000159985 #10	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771	ENSGT00940000154465.C #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000185720	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b	ENSGT00940000159847 #27	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b
Marmotini	ANCESTRAL SPECIES	13	ENSGT00510000046499	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771	ENSGT00940000154465.C #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000185720	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b	ENSGT00940000159847 #27	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00510000046499	ENSGT00940000162541	ENSGT00390000016421.b.a	ENSGT00940000160495 #7	ENSGT00550000074968 #8	ENSGT00940000161312 #9	ENSGT00390000002960 #11	ENSGT00730000111429 #12	ENSGT00390000013771	ENSGT00940000154465.C #15	ENSGT00950000183064.b #16	ENSGT00940000157408 #17	ENSGT01080000257365.b.a.b.a.a #18	ENSGT00990000203615.b.a.a.a.b #20	ENSGT00940000160662 #21	ENSGT00940000160202 #22	ENSGT00500000044950 #23	ENSGT00950000183107.a.b.a #24	ENSGT00950000182802.A #25	ENSGT00390000008610.a.b.a.a.b #26	ENSGT00560000077266.b	ENSGT00940000159847 #27	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000160964 #29	ENSGT00940000163238 #30	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b
Arctic ground squirrel	MODERN SPECIES	212											VPS26C (ENSUPAG00010020169) #16	DYRK1A (ENSUPAG00010020176) #17	KCNJ6 (ENSUPAG00010020183) #18	KCNJ15 (ENSUPAG00010020189) #20	ERG (ENSUPAG00010020197) #21	ETS2 (ENSUPAG00010020230) #22	BRWD1 (ENSUPAG00010020246) #24	ENSUPAG00010020321	ENSUPAG00010020326 #25	ENSUPAG00010020344 #26	LCA5L (ENSUPAG00010020362)	SH3BGR (ENSUPAG00010020382) #27	ENSUPAG00010020395	B3GALT5 (ENSUPAG00010020398) #29	ENSUPAG00010020403 #30	PCP4 (ENSUPAG00010020435)	DSCAM (ENSUPAG00010020438)	BACE2 (ENSUPAG00010020456)
Squirrel	MODERN SPECIES	100	SETD4 (ENSSTOG00000013526)	CBR3 (ENSSTOG00000012790)	DOP1B (ENSSTOG00000003970)	MORC3 (ENSSTOG00000028859) #7	CHAF1B (ENSSTOG00000001427) #8	CLDN14 (ENSSTOG00000023003) #9	HLCS (ENSSTOG00000015476) #11	ENSSTOG00000031463 #12	PIGP (ENSSTOG00000010943)	ENSSTOG00000004274 #15	ENSSTOG00000020762 #16	DYRK1A (ENSSTOG00000016151) #17	KCNJ6 (ENSSTOG00000016154) #18	KCNJ15 (ENSSTOG00000000052) #20	ERG (ENSSTOG00000025814) #21	ETS2 (ENSSTOG00000024655) #22	PSMG1 (ENSSTOG00000007084) #23	BRWD1 (ENSSTOG00000027149) #24	HMGN1 (ENSSTOG00000030815) #25	GET1 (ENSSTOG00000012736) #26	SH3BGR (ENSSTOG00000020100) #27	B3GALT5 (ENSSTOG00000012749) #29	ENSSTOG00000002986 #30	PCP4 (ENSSTOG00000033674)	DSCAM (ENSSTOG00000004849)	BACE2 (ENSSTOG00000011669)	MX1 (ENSSTOG00000012846)	FAM3B (ENSSTOG00000006382)	TMPRSS2 (ENSSTOG00000012868)	RIPK4 (ENSSTOG00000020499)	PRDM15 (ENSSTOG00000000262)
Alpin marmot	MODERN SPECIES	4	ENSMMMG00000002635	CBR3 (ENSMMMG00000002648)	DOP1B (ENSMMMG00000002673)	MORC3 (ENSMMMG00000002800) #7	CHAF1B (ENSMMMG00000002837) #8	CLDN14 (ENSMMMG00000002911) #9	ENSMMMG00000002958 #11	ENSMMMG00000002971 #12	PIGP (ENSMMMG00000002981)	TTC3 (ENSMMMG00000003016) #15	VPS26C (ENSMMMG00000003435) #16	DYRK1A (ENSMMMG00000003463) #17	KCNJ6 (ENSMMMG00000003548) #18	KCNJ15 (ENSMMMG00000003594) #20	ERG (ENSMMMG00000003632) #21	ETS2 (ENSMMMG00000004068) #22	PSMG1 (ENSMMMG00000004106) #23	ENSMMMG00000004110	BRWD1 (ENSMMMG00000004116) #24	HMGN1 (ENSMMMG00000004197) #25	GET1 (ENSMMMG00000004202) #26	LCA5L (ENSMMMG00000004259)	SH3BGR (ENSMMMG00000004305) #27	ENSMMMG00000004462	B3GALT5 (ENSMMMG00000004484) #29	ENSMMMG00000004498 #30	PCP4 (ENSMMMG00000004533)	DSCAM (ENSMMMG00000004573)	BACE2 (ENSMMMG00000004641)	FAM3B (ENSMMMG00000004645)	MX1 (ENSMMMG00000004765)
Eurasian red squirrel	MODERN SPECIES	1	DOP1B (ENSSVLG00005020661)	MORC3 (ENSSVLG00005020603) #7	CHAF1B (ENSSVLG00005020497) #8	CLDN14 (ENSSVLG00005020475) #9	SIM2 (ENSSVLG00005020374) #10	ENSSVLG00005020331 #11	ENSSVLG00005020110	ENSSVLG00005020080 #15	ENSSVLG00005020036 #15	ENSSVLG00005019788 #16	ENSSVLG00005019993 #16	DYRK1A (ENSSVLG00005019571) #17	KCNJ6 (ENSSVLG00005019383) #18	KCNJ15 (ENSSVLG00005019329) #20	ERG (ENSSVLG00005018996) #21	ETS2 (ENSSVLG00005018858) #22	PSMG1 (ENSSVLG00005018720) #23	ENSSVLG00005018680	ENSSVLG00005018655 #24	ENSSVLG00005018529 #25	GET1 (ENSSVLG00005018408) #26	LCA5L (ENSSVLG00005018302)	SH3BGR (ENSSVLG00005018209) #27	B3GALT5 (ENSSVLG00005018186) #29	ENSSVLG00005018094 #30	PCP4 (ENSSVLG00005018045)	DSCAM (ENSSVLG00005017352)	BACE2 (ENSSVLG00005017213)	ENSSVLG00005016342	FAM3B (ENSSVLG00005016099)	ENSSVLG00005015978