Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000003839 #22
Gnathostomata	ANCESTRAL SPECIES	33	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000156027 #30
Euteleostomi	ANCESTRAL SPECIES	9	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000154527.b	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000154527.b	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238
Amniota	ANCESTRAL SPECIES	22	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Mammalia	ANCESTRAL SPECIES	18	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00390000014109	ENSGT00950000183041.A.e	ENSGT00950000183041.A.f	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238
Theria	ANCESTRAL SPECIES	28	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973 #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35	ENSGT00940000159835 #36
Eutheria	ANCESTRAL SPECIES	14	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35	ENSGT00940000159835 #36
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Primates	ANCESTRAL SPECIES	1	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Haplorrhini	ANCESTRAL SPECIES	5											ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.p	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.a.b ##16	ENSGT00940000158890.q	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509.e #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.v #33	ENSGT00910000147252	ENSGT00940000153393.B.u.a ##33	ENSGT00390000004064 #34
Cebidae	ANCESTRAL SPECIES	14	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.p	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000158890.q	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509.e #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.v #33	ENSGT00910000147252	ENSGT00940000153393.B.u.a ##33	ENSGT00390000004064 #34
Cebidae_a	ANCESTRAL SPECIES	47	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.p	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509.e #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.v #33	ENSGT00910000147252	ENSGT00940000153393.B.u.a ##33	ENSGT00390000004064 #34
Capuchin	MODERN SPECIES	281									IQSEC1 (ENSCCAG00000024388) #15	RPL32 (ENSCCAG00000025373) #16	CAND2 (ENSCCAG00000032849) #17	TMEM40 (ENSCCAG00000020743) #18	RAF1 (ENSCCAG00000023070) #19	MKRN2 (ENSCCAG00000019802) #20	ENSCCAG00000022711 #21	MKRN2OS (ENSCCAG00000031553) #22	TSEN2 (ENSCCAG00000037851) #23	PPARG (ENSCCAG00000027364) #24	SYN2 (ENSCCAG00000034848) #25	TIMP4 (ENSCCAG00000035892) #26	TAMM41 (ENSCCAG00000025773) #27	VGLL4 (ENSCCAG00000032615) #28	ATG7 (ENSCCAG00000035255) #29	SLC6A1 (ENSCCAG00000026677) #30	SLC6A11 (ENSCCAG00000030058) #31	ATP2B2 (ENSCCAG00000032907) #32	SEC13 (ENSCCAG00000026715) #33	GHRL (ENSCCAG00000022227) #34	TATDN2 (ENSCCAG00000024974) #35	IRAK2 (ENSCCAG00000025730) #36	VHL (ENSCCAG00000031654) #37
Bolivian squirrel monkey	MODERN SPECIES	62	ATP13A5 (ENSSBOG00000030531)	ATP13A4 (ENSSBOG00000032487)	OPA1 (ENSSBOG00000021973)	HES1 (ENSSBOG00000028215)	ENSSBOG00000033814	CPN2 (ENSSBOG00000014283)	LRRC15 (ENSSBOG00000031469)	ATP13A3 (ENSSBOG00000005544)	TMEM44 (ENSSBOG00000020794)	LSG1 (ENSSBOG00000034938)	FAM43A (ENSSBOG00000018424)	XXYLT1 (ENSSBOG00000034641)	ACAP2 (ENSSBOG00000029437)	RAF1 (ENSSBOG00000015492) #19	MKRN2 (ENSSBOG00000034434) #20	MKRN2OS (ENSSBOG00000033896) #22	TSEN2 (ENSSBOG00000035499) #23	PPARG (ENSSBOG00000005712) #24	ENSSBOG00000030292 #25	TIMP4 (ENSSBOG00000032293) #26	TAMM41 (ENSSBOG00000034374) #27	VGLL4 (ENSSBOG00000026167) #28	ATG7 (ENSSBOG00000024304) #29	HRH1 (ENSSBOG00000015886)	SLC6A1 (ENSSBOG00000022090) #30	SLC6A11 (ENSSBOG00000029132) #31	ATP2B2 (ENSSBOG00000020057) #32	ENSSBOG00000020409	ENSSBOG00000023709 ##33	GHRL (ENSSBOG00000005768) #34	ENSSBOG00000025922 #35
Marmoset	MODERN SPECIES	6	ENSCJAG00000042664	XPC (ENSCJAG00000016952)	ENSCJAG00000087072	ENSCJAG00000072125	TMEM43 (ENSCJAG00000016924)	WNT7A (ENSCJAG00000040771)	FBLN2 (ENSCJAG00000016873)	HDAC11 (ENSCJAG00000016844)	NUP210 (ENSCJAG00000016795)	IQSEC1 (ENSCJAG00000016781) #15	ENSCJAG00000061647	CAND2 (ENSCJAG00000016770) #17	TMEM40 (ENSCJAG00000016751) #18	RAF1 (ENSCJAG00000016737) #19	ENSCJAG00000016733 #20	MKRN2OS (ENSCJAG00000040602) #22	TSEN2 (ENSCJAG00000080511) #23	ENSCJAG00000075859	ENSCJAG00000086839	PPARG (ENSCJAG00000016687) #24	TIMP4 (ENSCJAG00000038791) #26	SYN2 (ENSCJAG00000016647) #25	VGLL4 (ENSCJAG00000016643) #28	ENSCJAG00000058577	ATG7 (ENSCJAG00000016583) #29	HRH1 (ENSCJAG00000043961)	ENSCJAG00000084863	ENSCJAG00000070697	ENSCJAG00000072589	SLC6A1 (ENSCJAG00000016551) #30	SLC6A11 (ENSCJAG00000016541) #31
Mas night monkey	MODERN SPECIES	321	SLC6A6 (ENSANAG00000025733)	LSM3 (ENSANAG00000034627)	XPC (ENSANAG00000021069)	TMEM43 (ENSANAG00000036418)	CHCHD4 (ENSANAG00000034814)	WNT7A (ENSANAG00000033071)	FBLN2 (ENSANAG00000027135)	HDAC11 (ENSANAG00000035737)	NUP210 (ENSANAG00000036448)	IQSEC1 (ENSANAG00000028368) #15	ENSANAG00000020589 ##16	CAND2 (ENSANAG00000020366) #17	TMEM40 (ENSANAG00000036821) #18	RAF1 (ENSANAG00000031934) #19	MKRN2 (ENSANAG00000022646) #20	MKRN2OS (ENSANAG00000026143) #22	TSEN2 (ENSANAG00000026891) #23	PPARG (ENSANAG00000020115) #24	TIMP4 (ENSANAG00000032042) #26	SYN2 (ENSANAG00000021892) #25	TAMM41 (ENSANAG00000037740) #27	VGLL4 (ENSANAG00000038129) #28	ENSANAG00000012369	ENSANAG00000032758 #29	HRH1 (ENSANAG00000031051)	ENSANAG00000019292	CIDEC (ENSANAG00000024285)	IL17RE (ENSANAG00000022892)	ENSANAG00000021183	CRELD1 (ENSANAG00000026557)	PRRT3 (ENSANAG00000028211)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33	ENSGT00390000004064 #34
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266.a #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33
Hominidae	ANCESTRAL SPECIES	2	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266.a #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00940000153309.c.a.e.b	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266.a #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33
Gorilla	MODERN SPECIES	16	XPC (ENSGGOG00000009997)	TMEM43 (ENSGGOG00000016577)	CHCHD4 (ENSGGOG00000024077)	WNT7A (ENSGGOG00000012654)	ENSGGOG00000042871	FBLN2 (ENSGGOG00000011561)	HDAC11 (ENSGGOG00000007735)	NUP210 (ENSGGOG00000015096)	IQSEC1 (ENSGGOG00000001008) #15	RPL32 (ENSGGOG00000043568) ##16	CAND2 (ENSGGOG00000001004) #17	ENSGGOG00000021954	TMEM40 (ENSGGOG00000028438) #18	RAF1 (ENSGGOG00000023025) #19	MKRN2 (ENSGGOG00000000429) #20	ENSGGOG00000041526 #22	TSEN2 (ENSGGOG00000012488) #23	PPARG (ENSGGOG00000013117) #24	ENSGGOG00000043543	ENSGGOG00000038928	ENSGGOG00000038254	TIMP4 (ENSGGOG00000009761) #26	SYN2 (ENSGGOG00000009751) #25	ENSGGOG00000039682 #27	VGLL4 (ENSGGOG00000003500) #28	ATG7 (ENSGGOG00000003493) #29	HRH1 (ENSGGOG00000038168)	ENSGGOG00000016573	SLC6A1 (ENSGGOG00000000382) #30	SLC6A11 (ENSGGOG00000000379) #31	ATP2B2 (ENSGGOG00000010167) #32
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00940000153309.c.a.e.b	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266.a #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33
Human	MODERN SPECIES	15	LSM3 (ENSG00000170860)	XPC (ENSG00000154767)	TMEM43 (ENSG00000170876)	CHCHD4 (ENSG00000163528)	WNT7A (ENSG00000154764)	FBLN2 (ENSG00000163520)	HDAC11 (ENSG00000163517)	NUP210 (ENSG00000132182)	IQSEC1 (ENSG00000144711) #15	RPL32 (ENSG00000144713) #16	ENSG00000289809	CAND2 (ENSG00000144712) #17	TMEM40 (ENSG00000088726) #18	RAF1 (ENSG00000132155) #19	MKRN2 (ENSG00000075975) #20	MKRN2OS (ENSG00000225526) #22	TSEN2 (ENSG00000154743) #23	PPARG (ENSG00000132170) #24	TIMP4 (ENSG00000157150) #26	SYN2 (ENSG00000157152) #25	TAMM41 (ENSG00000144559) #27	VGLL4 (ENSG00000144560) #28	ATG7 (ENSG00000197548) #29	HRH1 (ENSG00000196639)	SLC6A1 (ENSG00000157103) #30	SLC6A11 (ENSG00000132164) #31	ATP2B2 (ENSG00000157087) #32	SEC13 (ENSG00000157020) #33	GHRL (ENSG00000157017) #34	ENSG00000289763	TATDN2 (ENSG00000157014) #35
Pan	ANCESTRAL SPECIES	2	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00940000153309.c.a.e.b	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266.a #23	ENSGT00940000158273 #24	ENSGT00910000148097	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252
Chimpanzee	MODERN SPECIES	16	XPC (ENSPTRG00000014649)	TMEM43 (ENSPTRG00000014648)	CHCHD4 (ENSPTRG00000014647)	WNT7A (ENSPTRG00000046824)	FBLN2 (ENSPTRG00000014642)	HDAC11 (ENSPTRG00000014641)	NUP210 (ENSPTRG00000014640)	ENSPTRG00000046540	IQSEC1 (ENSPTRG00000014639) #15	ENSPTRG00000050657 ##16	CAND2 (ENSPTRG00000014637) #17	ENSPTRG00000051489	TMEM40 (ENSPTRG00000014636) #18	RAF1 (ENSPTRG00000014635) #19	MKRN2 (ENSPTRG00000014634) #20	MKRN2OS (ENSPTRG00000046408) #22	TSEN2 (ENSPTRG00000014633) #23	PPARG (ENSPTRG00000014632) #24	ENSPTRG00000045342	ENSPTRG00000043822	TIMP4 (ENSPTRG00000014630) #26	SYN2 (ENSPTRG00000052430) #25	ENSPTRG00000049448	TAMM41 (ENSPTRG00000014628) #27	VGLL4 (ENSPTRG00000014626) #28	ATG7 (ENSPTRG00000014625) #29	HRH1 (ENSPTRG00000030304)	ENSPTRG00000050374	SLC6A1 (ENSPTRG00000014622) #30	SLC6A11 (ENSPTRG00000014621) #31	ENSPTRG00000042808
Bonobo	MODERN SPECIES	16	TMEM43 (ENSPPAG00000000804)	CHCHD4 (ENSPPAG00000032925)	WNT7A (ENSPPAG00000030187)	FBLN2 (ENSPPAG00000015671)	HDAC11 (ENSPPAG00000037567)	NUP210 (ENSPPAG00000037715)	ENSPPAG00000028546	IQSEC1 (ENSPPAG00000036448) #15	RPL32 (ENSPPAG00000008188) #16	CAND2 (ENSPPAG00000004317) #17	ENSPPAG00000036413	TMEM40 (ENSPPAG00000019163) #18	ENSPPAG00000024005	RAF1 (ENSPPAG00000035239) #19	MKRN2 (ENSPPAG00000036523) #20	MKRN2OS (ENSPPAG00000032216) #22	TSEN2 (ENSPPAG00000035317) #23	PPARG (ENSPPAG00000029006) #24	ENSPPAG00000028973	ENSPPAG00000030837	TIMP4 (ENSPPAG00000036078) #26	SYN2 (ENSPPAG00000038622) #25	ENSPPAG00000040309	TAMM41 (ENSPPAG00000037692) #27	VGLL4 (ENSPPAG00000035709) #28	ATG7 (ENSPPAG00000040386) #29	HRH1 (ENSPPAG00000023416)	SLC6A1 (ENSPPAG00000042842) #30	SLC6A11 (ENSPPAG00000039217) #31	ENSPPAG00000029625	ATP2B2 (ENSPPAG00000043225) #32
Orangutan	MODERN SPECIES	16	COL8A1 (ENSPPYG00000037085)	ROBO2 (ENSPPYG00000013633)	ROBO1 (ENSPPYG00000013634)	ENSPPYG00000037849	GBE1 (ENSPPYG00000025891)	CADM2 (ENSPPYG00000013635)	ENSPPYG00000013636	VGLL3 (ENSPPYG00000013637)	CHMP2B (ENSPPYG00000013639)	POU1F1 (ENSPPYG00000013640)	CGGBP1 (ENSPPYG00000031975)	ZNF654 (ENSPPYG00000013643)	C3orf38 (ENSPPYG00000013644)	CSNKA2IP (ENSPPYG00000034142)	EPHA3 (ENSPPYG00000013646)	MKRN2OS (ENSPPYG00000039535) #22	TSEN2 (ENSPPYG00000013647) #23	PPARG (ENSPPYG00000013648) #24	SYN2 (ENSPPYG00000013649) #25	TIMP4 (ENSPPYG00000030141) #26	ENSPPYG00000013651 #27	VGLL4 (ENSPPYG00000013652) #28	ATG7 (ENSPPYG00000041433) #29	HRH1 (ENSPPYG00000013653)	SLC6A1 (ENSPPYG00000013655) #30	SLC6A11 (ENSPPYG00000013656) #31	ATP2B2 (ENSPPYG00000013657) #32	SEC13 (ENSPPYG00000013658) #33	GHRL (ENSPPYG00000013659) #34	TATDN2 (ENSPPYG00000013661) #35	IRAK2 (ENSPPYG00000013662) #36
Gibbon	MODERN SPECIES	13	LSM3 (ENSNLEG00000005079)	XPC (ENSNLEG00000005000)	TMEM43 (ENSNLEG00000004956)	CHCHD4 (ENSNLEG00000029809)	ENSNLEG00000004941	FBLN2 (ENSNLEG00000004881)	HDAC11 (ENSNLEG00000004853)	NUP210 (ENSNLEG00000004799)	IQSEC1 (ENSNLEG00000004793) #15	ENSNLEG00000004798	ENSNLEG00000035616 ##16	CAND2 (ENSNLEG00000004774) #17	TMEM40 (ENSNLEG00000004755) #18	RAF1 (ENSNLEG00000004732) #19	MKRN2 (ENSNLEG00000004711) #20	MKRN2OS (ENSNLEG00000030256) #22	TSEN2 (ENSNLEG00000004696) #23	PPARG (ENSNLEG00000004650) #24	ENSNLEG00000029797	ENSNLEG00000004578 #25	TIMP4 (ENSNLEG00000004638) #26	ENSNLEG00000004559 #27	VGLL4 (ENSNLEG00000004535) #28	ATG7 (ENSNLEG00000027005) #29	HRH1 (ENSNLEG00000018917)	ENSNLEG00000030870	SLC6A1 (ENSNLEG00000026605) #30	SLC6A11 (ENSNLEG00000004525) #31	ENSNLEG00000026798 #32	SEC13 (ENSNLEG00000004482) #33	GHRL (ENSNLEG00000004451) #34
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B.v #33	ENSGT00390000004064 #34
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a.e.b ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.a.a.b.b	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252
Drill	MODERN SPECIES	874	LSM3 (ENSMLEG00000036162)	XPC (ENSMLEG00000041682)	TMEM43 (ENSMLEG00000035818)	ENSMLEG00000031201	WNT7A (ENSMLEG00000042427)	FBLN2 (ENSMLEG00000040866)	HDAC11 (ENSMLEG00000038310)	NUP210 (ENSMLEG00000038717)	IQSEC1 (ENSMLEG00000035708) #15	RPL32 (ENSMLEG00000033655) ##16	CAND2 (ENSMLEG00000034596) #17	TMEM40 (ENSMLEG00000039986) #18	ENSMLEG00000039626	RAF1 (ENSMLEG00000029839) #19	MKRN2 (ENSMLEG00000006880) #20	MKRN2OS (ENSMLEG00000006675) #22	TSEN2 (ENSMLEG00000038210) #23	PPARG (ENSMLEG00000043422) #24	TIMP4 (ENSMLEG00000040251) #26	SYN2 (ENSMLEG00000030880) #25
Sooty mangabey	MODERN SPECIES	650	XPC (ENSCATG00000036725)	TMEM43 (ENSCATG00000038308)	WNT7A (ENSCATG00000033711)	ENSCATG00000033105	FBLN2 (ENSCATG00000038061)	HDAC11 (ENSCATG00000026123)	NUP210 (ENSCATG00000035260)	IQSEC1 (ENSCATG00000037864) #15	RPL32 (ENSCATG00000038198) #16	CAND2 (ENSCATG00000038720) #17	TMEM40 (ENSCATG00000027847) #18	ENSCATG00000031525	ENSCATG00000001547	ENSCATG00000035852 #19	MKRN2 (ENSCATG00000041591) #20	MKRN2OS (ENSCATG00000040481) #22	TSEN2 (ENSCATG00000031911) #23	PPARG (ENSCATG00000022947) #24	ENSCATG00000017268	TIMP4 (ENSCATG00000034145) #26	SYN2 (ENSCATG00000031791) #25	ENSCATG00000042881	ENSCATG00000031162	TAMM41 (ENSCATG00000033399) #27	VGLL4 (ENSCATG00000041543) #28	ATG7 (ENSCATG00000034745) #29	HRH1 (ENSCATG00000000316)	ENSCATG00000031939	SLC6A1 (ENSCATG00000019250) #30	SLC6A11 (ENSCATG00000032556) #31	ATP2B2 (ENSCATG00000033513) #32
Olive baboon	MODERN SPECIES	11	TMEM43 (ENSPANG00000012906)	CHCHD4 (ENSPANG00000025946)	WNT7A (ENSPANG00000046909)	ENSPANG00000007694	ENSPANG00000047403	HDAC11 (ENSPANG00000024163)	NUP210 (ENSPANG00000006878)	IQSEC1 (ENSPANG00000006877) #15	ENSPANG00000007693 ##16	CAND2 (ENSPANG00000018464) #17	TMEM40 (ENSPANG00000014208) #18	RAF1 (ENSPANG00000008568) #19	ENSPANG00000035680	MKRN2 (ENSPANG00000021307) #20	TSEN2 (ENSPANG00000013415) #23	MKRN2OS (ENSPANG00000008481) #22	PPARG (ENSPANG00000016461) #24	SYN2 (ENSPANG00000024762) #25	TIMP4 (ENSPANG00000001070) #26	ENSPANG00000045955	ENSPANG00000031360	TAMM41 (ENSPANG00000025444) #27	VGLL4 (ENSPANG00000024761) #28	ATG7 (ENSPANG00000019142) #29	HRH1 (ENSPANG00000031157)	SLC6A1 (ENSPANG00000009643) #30	SLC6A11 (ENSPANG00000009913) #31	ATP2B2 (ENSPANG00000012883) #32	SEC13 (ENSPANG00000033927) #33	GHRL (ENSPANG00000022005) #34	TATDN2 (ENSPANG00000008626) #35
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.b.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.v #33
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.r	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000153973.c.a.a.e.b ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.b.a.b.b.a.a.b.a.a	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.v #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.e #35
Rhesus	MODERN SPECIES	11	GRIP2 (ENSMMUG00000006342)	SLC6A6 (ENSMMUG00000006340)	TMEM43 (ENSMMUG00000023124)	XPC (ENSMMUG00000023125)	WNT7A (ENSMMUG00000018445)	FBLN2 (ENSMMUG00000017659)	HDAC11 (ENSMMUG00000001369)	ENSMMUG00000056487	NUP210 (ENSMMUG00000015979)	IQSEC1 (ENSMMUG00000001342) #15	RPL32 (ENSMMUG00000001340) ##16	CAND2 (ENSMMUG00000001339) #17	TMEM40 (ENSMMUG00000010276) #18	RAF1 (ENSMMUG00000007450) #19	MKRN2 (ENSMMUG00000009536) #20	MKRN2OS (ENSMMUG00000031993) #22	TSEN2 (ENSMMUG00000007195) #23	PPARG (ENSMMUG00000007191) #24	TIMP4 (ENSMMUG00000001127) #26	SYN2 (ENSMMUG00000001120) #25	ENSMMUG00000055179	TAMM41 (ENSMMUG00000013372) #27	ENSMMUG00000062782	VGLL4 (ENSMMUG00000021806) #28	ATG7 (ENSMMUG00000021804) #29	HRH1 (ENSMMUG00000056308)	SLC6A1 (ENSMMUG00000005917) #30	SLC6A11 (ENSMMUG00000005916) #31	ATP2B2 (ENSMMUG00000019938) #32	SEC13 (ENSMMUG00000019936) #33	GHRL (ENSMMUG00000065159) #34
Crab-eating macaque	MODERN SPECIES	11	XPC (ENSMFAG00000031847)	TMEM43 (ENSMFAG00000047872)	ENSMFAG00000044351	WNT7A (ENSMFAG00000044809)	FBLN2 (ENSMFAG00000003835)	HDAC11 (ENSMFAG00000036363)	ENSMFAG00000058794	NUP210 (ENSMFAG00000044461)	IQSEC1 (ENSMFAG00000043873) #15	ENSMFAG00000045190 ##16	CAND2 (ENSMFAG00000044298) #17	TMEM40 (ENSMFAG00000039365) #18	RAF1 (ENSMFAG00000038061) #19	ENSMFAG00000051059	MKRN2 (ENSMFAG00000035845) #20	MKRN2OS (ENSMFAG00000031892) #22	TSEN2 (ENSMFAG00000038583) #23	PPARG (ENSMFAG00000034317) #24	TIMP4 (ENSMFAG00000052548) #26	ENSMFAG00000021078	SYN2 (ENSMFAG00000041997) #25	ENSMFAG00000059255	TAMM41 (ENSMFAG00000033931) #27	VGLL4 (ENSMFAG00000009745) #28	ATG7 (ENSMFAG00000040779) #29	HRH1 (ENSMFAG00000030336)	SLC6A1 (ENSMFAG00000007438) #30	SLC6A11 (ENSMFAG00000034176) #31	ATP2B2 (ENSMFAG00000034151) #32	SEC13 (ENSMFAG00000037200) #33	GHRL (ENSMFAG00000043669) #34
Pig-tailed macaque	MODERN SPECIES	546	ENSMNEG00000043632	XPC (ENSMNEG00000038400)	TMEM43 (ENSMNEG00000032802)	ENSMNEG00000040402	WNT7A (ENSMNEG00000037464)	FBLN2 (ENSMNEG00000035537)	HDAC11 (ENSMNEG00000040546)	NUP210 (ENSMNEG00000041495)	ENSMNEG00000029455	IQSEC1 (ENSMNEG00000042270) #15	RPL32 (ENSMNEG00000030893) ##16	CAND2 (ENSMNEG00000044168) #17	TMEM40 (ENSMNEG00000027829) #18	RAF1 (ENSMNEG00000040519) #19	MKRN2 (ENSMNEG00000031197) #20	MKRN2OS (ENSMNEG00000034066) #22	TSEN2 (ENSMNEG00000025898) #23	PPARG (ENSMNEG00000028217) #24	TIMP4 (ENSMNEG00000028992) #26	SYN2 (ENSMNEG00000033226) #25	ENSMNEG00000024024	ENSMNEG00000042157	TAMM41 (ENSMNEG00000040547) #27	VGLL4 (ENSMNEG00000039421) #28	ATG7 (ENSMNEG00000028392) #29	HRH1 (ENSMNEG00000008240)	ENSMNEG00000030516	SLC6A1 (ENSMNEG00000031841) #30	SLC6A11 (ENSMNEG00000031997) #31	ATP2B2 (ENSMNEG00000040193) #32	SEC13 (ENSMNEG00000032098) #33
Vervet Monkey	MODERN SPECIES	14	GRIP2 (ENSCSAG00000009353)	SLC6A6 (ENSCSAG00000009391)	XPC (ENSCSAG00000009411)	TMEM43 (ENSCSAG00000009426)	CHCHD4 (ENSCSAG00000009431)	WNT7A (ENSCSAG00000009439)	FBLN2 (ENSCSAG00000009449)	HDAC11 (ENSCSAG00000009462)	NUP210 (ENSCSAG00000009474)	IQSEC1 (ENSCSAG00000009482) #15	RPL32 (ENSCSAG00000009485) #16	CAND2 (ENSCSAG00000009557) #17	TMEM40 (ENSCSAG00000009604) #18	RAF1 (ENSCSAG00000009721) #19	MKRN2 (ENSCSAG00000009754) #20	MKRN2OS (ENSCSAG00000009764) #22	TSEN2 (ENSCSAG00000009822) #23	PPARG (ENSCSAG00000009839) #24	TIMP4 (ENSCSAG00000009845) #26	SYN2 (ENSCSAG00000009855) #25	TAMM41 (ENSCSAG00000009866) #27	VGLL4 (ENSCSAG00000009873) #28	ATG7 (ENSCSAG00000009887) #29	HRH1 (ENSCSAG00000018810)	SLC6A1 (ENSCSAG00000009912) #30	SLC6A11 (ENSCSAG00000009991) #31	ENSCSAG00000010009	ATP2B2 (ENSCSAG00000010018) #32	SEC13 (ENSCSAG00000010026) #33	GHRL (ENSCSAG00000010031) #34	TATDN2 (ENSCSAG00000010035) #35
Rhinopithecus	ANCESTRAL SPECIES	113														ENSGT00940000156084.bb #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273.r #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000016970.h	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00910000148924	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00910000148795	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32
Golden snub-nosed monkey	MODERN SPECIES	2016														ENSRROG00000041930 #19	MKRN2 (ENSRROG00000033767) #20	MKRN2OS (ENSRROG00000037999) #22	TSEN2 (ENSRROG00000041156) #23	ENSRROG00000034587	PPARG (ENSRROG00000044807) #24	TIMP4 (ENSRROG00000043357) #26	SYN2 (ENSRROG00000040768) #25	ENSRROG00000042628	TAMM41 (ENSRROG00000034628) #27	VGLL4 (ENSRROG00000032842) #28	ENSRROG00000038335	ATG7 (ENSRROG00000041008) #29	HRH1 (ENSRROG00000012382)	ENSRROG00000044510	SLC6A1 (ENSRROG00000040161) #30	SLC6A11 (ENSRROG00000031463) #31	ATP2B2 (ENSRROG00000033593) #32
Black snub-nosed monkey	MODERN SPECIES	1833													ENSRBIG00000027349	ENSRBIG00000029284 #19	MKRN2 (ENSRBIG00000039128) #20	MKRN2OS (ENSRBIG00000033018) #22	TSEN2 (ENSRBIG00000033133) #23	PPARG (ENSRBIG00000042269) #24
Tarsier	MODERN SPECIES	5029													RAF1 (ENSTSYG00000007438) #19	MKRN2 (ENSTSYG00000007429) #20	ENSTSYG00000030920	MKRN2OS (ENSTSYG00000029616) #22	TSEN2 (ENSTSYG00000010816) #23	PPARG (ENSTSYG00000006950) #24	GABRR1 (ENSTSYG00000033942)	PM20D2 (ENSTSYG00000027051)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Lemuriformes	ANCESTRAL SPECIES	76					ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000157312	ENSGT00940000156915 #15	ENSGT00390000009491.d
Mouse lemur	MODERN SPECIES	15	NSG2 (ENSMICG00000035993)	MSX2 (ENSMICG00000026941)	ENSMICG00000028823	PLXND1 (ENSMICG00000008079)	H1-8 (ENSMICG00000030377)	RHO (ENSMICG00000047910)	IFT122 (ENSMICG00000008033)	MBD4 (ENSMICG00000008022)	EFCAB12 (ENSMICG00000008010)	ENSMICG00000034607 ##16	CAND2 (ENSMICG00000041434) #17	TMEM40 (ENSMICG00000003715) #18	ENSMICG00000033639	RAF1 (ENSMICG00000012172) #19	MKRN2 (ENSMICG00000012164) #20	MKRN2OS (ENSMICG00000038087) #22	TSEN2 (ENSMICG00000016672) #23	PPARG (ENSMICG00000016663) #24	TIMP4 (ENSMICG00000045817) #26	SYN2 (ENSMICG00000003565) #25	ENSMICG00000012731	TAMM41 (ENSMICG00000016586) #27	VGLL4 (ENSMICG00000016559) #28	ENSMICG00000035458	ATG7 (ENSMICG00000016547) #29	SLC6A1 (ENSMICG00000003055) #30	SLC6A11 (ENSMICG00000033698) #31	ATP2B2 (ENSMICG00000002406) #32	ACAD9 (ENSMICG00000007418)	IQSEC1 (ENSMICG00000002633) #15	ENSMICG00000007742
Lemuriformes_a	ANCESTRAL SPECIES	162					ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000157312	ENSGT00940000156915 #15	ENSGT00390000009491.d
Greater bamboo lemur	MODERN SPECIES	130				ENSPSMG00000002470	H1-8 (ENSPSMG00000002466)	RHO (ENSPSMG00000002457)	IFT122 (ENSPSMG00000001543)	MBD4 (ENSPSMG00000001016)	EFCAB12 (ENSPSMG00000000969)	ENSPSMG00000000953 ##16	CAND2 (ENSPSMG00000000926) #17	ENSPSMG00000000888	TMEM40 (ENSPSMG00000000837) #18	RAF1 (ENSPSMG00000000725) #19	MKRN2 (ENSPSMG00000000636) #20	MKRN2OS (ENSPSMG00000000584) #22	TSEN2 (ENSPSMG00000000537) #23	PPARG (ENSPSMG00000000463) #24	TIMP4 (ENSPSMG00000000419) #26	SYN2 (ENSPSMG00000000398) #25	TAMM41 (ENSPSMG00000000346) #27	VGLL4 (ENSPSMG00000000320) #28	ATG7 (ENSPSMG00000000247) #29	HRH1 (ENSPSMG00000000102)	SLC6A1 (ENSPSMG00000025445) #30	SLC6A11 (ENSPSMG00000025382) #31
Coquerels sifaka	MODERN SPECIES	614				PLXND1 (ENSPCOG00000027312)	H1-8 (ENSPCOG00000024479)	RHO (ENSPCOG00000024236)	IFT122 (ENSPCOG00000023934)	ENSPCOG00000018583	EFCAB12 (ENSPCOG00000020532)	ENSPCOG00000026378 ##16	CAND2 (ENSPCOG00000020368) #17	TMEM40 (ENSPCOG00000027785) #18	ENSPCOG00000024646	RAF1 (ENSPCOG00000013436) #19	MKRN2 (ENSPCOG00000013481) #20	MKRN2OS (ENSPCOG00000027519) #22	TSEN2 (ENSPCOG00000019328) #23	PPARG (ENSPCOG00000017510) #24	SYN2 (ENSPCOG00000020181) #25	TIMP4 (ENSPCOG00000025232) #26	TAMM41 (ENSPCOG00000021554) #27	VGLL4 (ENSPCOG00000016845) #28	ATG7 (ENSPCOG00000021597) #29	SLC6A1 (ENSPCOG00000027376) #30	SLC6A11 (ENSPCOG00000012550) #31	ATP2B2 (ENSPCOG00000022973) #32	ENSPCOG00000027035	ACAD9 (ENSPCOG00000028509)	IQSEC1 (ENSPCOG00000022781) #15	ENSPCOG00000026952	NUP210 (ENSPCOG00000026371)
Bushbaby	MODERN SPECIES	216	RBSN (ENSOGAG00000014042)	TRH (ENSOGAG00000017199)	ENSOGAG00000031381	TMCC1 (ENSOGAG00000010283)	ENSOGAG00000032612	PLXND1 (ENSOGAG00000010266)	RHO (ENSOGAG00000010259)	IFT122 (ENSOGAG00000010245)	MBD4 (ENSOGAG00000010236)	ENSOGAG00000010234	RPL32 (ENSOGAG00000028498) ##16	CAND2 (ENSOGAG00000028928) #17	TMEM40 (ENSOGAG00000003261) #18	RAF1 (ENSOGAG00000003256) #19	MKRN2 (ENSOGAG00000003255) #20	MKRN2OS (ENSOGAG00000031425) #22	ENSOGAG00000002976 #23	PPARG (ENSOGAG00000002971) #24	SYN2 (ENSOGAG00000016700) #25	TIMP4 (ENSOGAG00000016704) #26	ENSOGAG00000006595	ENSOGAG00000031076	TAMM41 (ENSOGAG00000030657) #27	VGLL4 (ENSOGAG00000016184) #28	ATG7 (ENSOGAG00000016175) #29	HRH1 (ENSOGAG00000016172)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Glires	ANCESTRAL SPECIES	2	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Rodentia	ANCESTRAL SPECIES	2	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Kangaroo rat	MODERN SPECIES	331	Fgd5 (ENSDORG00000016297)	Nr2c2 (ENSDORG00000007038)	Mrps25 (ENSDORG00000026838)	Rbsn (ENSDORG00000009815)	Tmcc1 (ENSDORG00000026595)	Plxnd1 (ENSDORG00000000912)	ENSDORG00000026967	Rho (ENSDORG00000000911)	Ift122 (ENSDORG00000000906)	ENSDORG00000000902	Rpl32 (ENSDORG00000008426) #16	Cand2 (ENSDORG00000008424) #17	ENSDORG00000023579 #18	Raf1 (ENSDORG00000015622) #19	Mkrn2 (ENSDORG00000015621) #20	Mkrn2os (ENSDORG00000028573) #22	Tsen2 (ENSDORG00000003395) #23	Pparg (ENSDORG00000003445) #24	ENSDORG00000009507 #25	Timp4 (ENSDORG00000009509) #26	Tamm41 (ENSDORG00000002091) #27	Vgll4 (ENSDORG00000004378) #28	Atg7 (ENSDORG00000004380) #29	Slc6a1 (ENSDORG00000016380) #30	Slc6a11 (ENSDORG00000016390) #31	Atp2b2 (ENSDORG00000015330) #32	Sec13 (ENSDORG00000015327) #33	Ghrl (ENSDORG00000012281) #34	Tatdn2 (ENSDORG00000012279) #35	Irak2 (ENSDORG00000012277) #36	Vhl (ENSDORG00000015401) #37
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Muroidea	ANCESTRAL SPECIES	37	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Chinese hamster chok1gshd	MODERN SPECIES	144	Marchf8 (ENSCGRG00001003616)	Zfand4 (ENSCGRG00001023303)	Washc2 (ENSCGRG00001019572)	Tmcc1 (ENSCGRG00001016263)	Plxnd1 (ENSCGRG00001007901)	H1f8 (ENSCGRG00001024504)	Rho (ENSCGRG00001018161)	Ift122 (ENSCGRG00001012761)	Mbd4 (ENSCGRG00001003507)	Efcab12 (ENSCGRG00001000767)	ENSCGRG00001000039 ##16	Cand2 (ENSCGRG00001024197) #17	Tmem40 (ENSCGRG00001022432) #18	Raf1 (ENSCGRG00001020096) #19	ENSCGRG00001019373 #20	Mkrn2os (ENSCGRG00001018483) #22	Tsen2 (ENSCGRG00001017681) #23	Pparg (ENSCGRG00001013849) #24	Timp4 (ENSCGRG00001010158) #26	Syn2 (ENSCGRG00001007902) #25	Tamm41 (ENSCGRG00001003506) #27	Vgll4 (ENSCGRG00001001705) #28	Atg7 (ENSCGRG00001017070) #29	Hrh1 (ENSCGRG00001015773)	Slc6a1 (ENSCGRG00001006244) #30	Slc6a11 (ENSCGRG00001000475) #31	Atp2b2 (ENSCGRG00001021784) #32	Sec13 (ENSCGRG00001019327) #33	Ghrl (ENSCGRG00001018358) #34	ENSCGRG00001017251 #35	Irak2 (ENSCGRG00001011625) #36
Golden Hamster	MODERN SPECIES	622	ENSMAUG00000021879	ENSMAUG00000008109	Washc2 (ENSMAUG00000020725)	ENSMAUG00000021669	Plxnd1 (ENSMAUG00000021112)	H1f8 (ENSMAUG00000011359)	Rho (ENSMAUG00000002081)	Ift122 (ENSMAUG00000005778)	ENSMAUG00000014245	Efcab12 (ENSMAUG00000010638)	ENSMAUG00000020260	Cand2 (ENSMAUG00000005693) #17	Tmem40 (ENSMAUG00000015454) #18	Raf1 (ENSMAUG00000015447) #19	Mkrn2 (ENSMAUG00000014200) #20	Mkrn2os (ENSMAUG00000010492) #22	ENSMAUG00000013859 #23	ENSMAUG00000012323 #24	ENSMAUG00000020153 #25	Timp4 (ENSMAUG00000018049) #26	ENSMAUG00000013097	Tamm41 (ENSMAUG00000017519) #27	Vgll4 (ENSMAUG00000011159) #28	Atg7 (ENSMAUG00000003276) #29	Hrh1 (ENSMAUG00000009874)	Slc6a1 (ENSMAUG00000021551) #30	Slc6a11 (ENSMAUG00000008311) #31	Atp2b2 (ENSMAUG00000009448) #32	Sec13 (ENSMAUG00000012999) #33	Ghrl (ENSMAUG00000021031) #34	Tatdn2 (ENSMAUG00000008081) #35
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Northern American deer mouse	MODERN SPECIES	16	Zfand4 (ENSPEMG00000008943)	Washc2 (ENSPEMG00000017284)	Tmcc1 (ENSPEMG00000000449)	ENSPEMG00000024601	Plxnd1 (ENSPEMG00000008271)	H1f8 (ENSPEMG00000011381)	Rho (ENSPEMG00000008463)	Ift122 (ENSPEMG00000017389)	Mbd4 (ENSPEMG00000006226)	Efcab12 (ENSPEMG00000012553)	ENSPEMG00000012965 ##16	ENSPEMG00000029699 ##17	Tmem40 (ENSPEMG00000002944) #18	Raf1 (ENSPEMG00000012728) #19	Mkrn2 (ENSPEMG00000002776) #20	Mkrn2os (ENSPEMG00000012076) #22	Tsen2 (ENSPEMG00000013175) #23	Pparg (ENSPEMG00000013545) #24	Timp4 (ENSPEMG00000026166) #26	Syn2 (ENSPEMG00000016120) #25	Tamm41 (ENSPEMG00000017033) #27	Vgll4 (ENSPEMG00000026845) #28	Atg7 (ENSPEMG00000010473) #29	Hrh1 (ENSPEMG00000028414)	Slc6a1 (ENSPEMG00000011702) #30	Slc6a11 (ENSPEMG00000020194) #31	Atp2b2 (ENSPEMG00000000259) #32	Sec13 (ENSPEMG00000009433) #33	Ghrl (ENSPEMG00000001433) #34	Tatdn2 (ENSPEMG00000000467) #35	Irak2 (ENSPEMG00000012267) #36
Prairie vole	MODERN SPECIES	84	ENSMOCG00000018066	Washc2 (ENSMOCG00000018011)	Tmcc1 (ENSMOCG00000009713)	Plxnd1 (ENSMOCG00000014026)	H1f8 (ENSMOCG00000005594)	Rho (ENSMOCG00000022070)	Ift122 (ENSMOCG00000014549)	ENSMOCG00000002466	ENSMOCG00000019929	Efcab12 (ENSMOCG00000020496)	ENSMOCG00000015206 ##16	Cand2 (ENSMOCG00000012580) #17	Tmem40 (ENSMOCG00000021932) #18	Raf1 (ENSMOCG00000012403) #19	Mkrn2 (ENSMOCG00000015472) #20	Mkrn2os (ENSMOCG00000010265) #22	Tsen2 (ENSMOCG00000020824) #23	Pparg (ENSMOCG00000017202) #24	ENSMOCG00000013854	Timp4 (ENSMOCG00000013297) #26	Syn2 (ENSMOCG00000000368) #25	Tamm41 (ENSMOCG00000020960) #27	Vgll4 (ENSMOCG00000012297) #28	Atg7 (ENSMOCG00000009400) #29	ENSMOCG00000016658	Hrh1 (ENSMOCG00000009133)	Slc6a1 (ENSMOCG00000011689) #30	Slc6a11 (ENSMOCG00000010284) #31	Atp2b2 (ENSMOCG00000022399) #32	Sec13 (ENSMOCG00000020249) #33	Ghrl (ENSMOCG00000014220) #34
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Mus	ANCESTRAL SPECIES	12	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000155716.h	ENSGT00940000155716.g	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000155716.g	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT01090000263461
Mouse	MODERN SPECIES	15	Marchf8 (ENSMUSG00000025702)	Zfand4 (ENSMUSG00000042213)	Washc2 (ENSMUSG00000024104)	Tmcc1 (ENSMUSG00000030126)	Plxnd1 (ENSMUSG00000030123)	H1f8 (ENSMUSG00000042279)	Rho (ENSMUSG00000030324)	Ift122 (ENSMUSG00000030323)	Mbd4 (ENSMUSG00000030322)	Efcab12 (ENSMUSG00000030321)	Rpl32 (ENSMUSG00000057841) #16	Cand2 (ENSMUSG00000030319) #17	Tmem40 (ENSMUSG00000059900) #18	Raf1 (ENSMUSG00000000441) #19	Mkrn2 (ENSMUSG00000000439) #20	Mkrn2os (ENSMUSG00000068011) #22	Tsen2 (ENSMUSG00000042389) #23	Pparg (ENSMUSG00000000440) #24	Timp4 (ENSMUSG00000030317) #26	Syn2 (ENSMUSG00000009394) #25	Tamm41 (ENSMUSG00000030316) #27	Vgll4 (ENSMUSG00000030315) #28	Atg7 (ENSMUSG00000030314) #29	Hrh1 (ENSMUSG00000053004)	Slc6a1 (ENSMUSG00000030310) #30	Slc6a11 (ENSMUSG00000030307) #31	Atp2b2 (ENSMUSG00000030302) #32	Sec13 (ENSMUSG00000030298) #33	Ghrl (ENSMUSG00000064177) #34	ENSMUSG00000121578	Tatdn2 (ENSMUSG00000056952) #35
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000155716.h	ENSGT00940000155716.g	ENSGT00940000153997.b.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029796	Zfand4 (MGP_SPRETEiJ_G0029795)	Washc2 (MGP_SPRETEiJ_G0029794)	MGP_SPRETEiJ_G0029793	Plxnd1 (MGP_SPRETEiJ_G0029792)	H1f8 (MGP_SPRETEiJ_G0029791)	Rho (MGP_SPRETEiJ_G0029790)	Ift122 (MGP_SPRETEiJ_G0029789)	Mbd4 (MGP_SPRETEiJ_G0029788)	Efcab12 (MGP_SPRETEiJ_G0029787)	MGP_SPRETEiJ_G0029786 ##16	Cand2 (MGP_SPRETEiJ_G0029785) #17	Tmem40 (MGP_SPRETEiJ_G0029784) #18	Raf1 (MGP_SPRETEiJ_G0029783) #19	Mkrn2 (MGP_SPRETEiJ_G0029782) #20	Mkrn2os (MGP_SPRETEiJ_G0029781) #22	Tsen2 (MGP_SPRETEiJ_G0029780) #23	Pparg (MGP_SPRETEiJ_G0029779) #24	Timp4 (MGP_SPRETEiJ_G0029778) #26	MGP_SPRETEiJ_G0029777	Syn2 (MGP_SPRETEiJ_G0029776) #25	Tamm41 (MGP_SPRETEiJ_G0029775) #27	Vgll4 (MGP_SPRETEiJ_G0029774) #28	Atg7 (MGP_SPRETEiJ_G0029773) #29	Hrh1 (MGP_SPRETEiJ_G0029772)	Slc6a1 (MGP_SPRETEiJ_G0029771) #30	Slc6a11 (MGP_SPRETEiJ_G0029770) #31	Atp2b2 (MGP_SPRETEiJ_G0029769) #32	Sec13 (MGP_SPRETEiJ_G0029768) #33	Ghrl (MGP_SPRETEiJ_G0029767) #34	Tatdn2 (MGP_SPRETEiJ_G0029766) #35
Steppe mouse	MODERN SPECIES	3022	Washc2 (ENSMSIG00000001796)	ENSMSIG00000001776	Tmcc1 (ENSMSIG00000001659)	ENSMSIG00000001422	H1f8 (ENSMSIG00000001367)	ENSMSIG00000001359	Rho (ENSMSIG00000001309)	Ift122 (ENSMSIG00000000881)	Mbd4 (ENSMSIG00000000793)	Efcab12 (ENSMSIG00000000741)	Rpl32 (ENSMSIG00000000692) ##16	Cand2 (ENSMSIG00000000651) #17	Tmem40 (ENSMSIG00000000359) #18	Raf1 (ENSMSIG00000000188) #19	ENSMSIG00000031938 #20	Mkrn2os (ENSMSIG00000031937) #22	Tsen2 (ENSMSIG00000031936) #23	Pparg (ENSMSIG00000031935) #24	Timp4 (ENSMSIG00000031934) #26	ENSMSIG00000031933	Syn2 (ENSMSIG00000031932) #25	ENSMSIG00000031931 #27	ENSMSIG00000031930 #28	ENSMSIG00000031929	Atg7 (ENSMSIG00000031927) #29
Ryukyu mouse	MODERN SPECIES	15	MGP_CAROLIEiJ_G0028768	Zfand4 (MGP_CAROLIEiJ_G0028767)	Washc2 (MGP_CAROLIEiJ_G0028766)	Tmcc1 (MGP_CAROLIEiJ_G0028765)	Plxnd1 (MGP_CAROLIEiJ_G0028764)	H1f8 (MGP_CAROLIEiJ_G0028763)	Rho (MGP_CAROLIEiJ_G0028762)	Ift122 (MGP_CAROLIEiJ_G0028761)	Mbd4 (MGP_CAROLIEiJ_G0028760)	Efcab12 (MGP_CAROLIEiJ_G0028759)	MGP_CAROLIEiJ_G0028758 ##16	Cand2 (MGP_CAROLIEiJ_G0028757) #17	MGP_CAROLIEiJ_G0028756 #18	Raf1 (MGP_CAROLIEiJ_G0028755) #19	Mkrn2 (MGP_CAROLIEiJ_G0028754) #20	Mkrn2os (MGP_CAROLIEiJ_G0028753) #22	Tsen2 (MGP_CAROLIEiJ_G0028752) #23	Pparg (MGP_CAROLIEiJ_G0028751) #24	Timp4 (MGP_CAROLIEiJ_G0028750) #26	MGP_CAROLIEiJ_G0028749	Syn2 (MGP_CAROLIEiJ_G0028748) #25	Tamm41 (MGP_CAROLIEiJ_G0028747) #27	Vgll4 (MGP_CAROLIEiJ_G0028746) #28	Atg7 (MGP_CAROLIEiJ_G0028745) #29	Hrh1 (MGP_CAROLIEiJ_G0028744)	Slc6a1 (MGP_CAROLIEiJ_G0028743) #30	Slc6a11 (MGP_CAROLIEiJ_G0028742) #31	Atp2b2 (MGP_CAROLIEiJ_G0028741) #32	Sec13 (MGP_CAROLIEiJ_G0028740) #33	Ghrl (MGP_CAROLIEiJ_G0028739) #34	Tatdn2 (MGP_CAROLIEiJ_G0028738) #35
Shrew mouse	MODERN SPECIES	11	MGP_PahariEiJ_G0022519	MGP_PahariEiJ_G0022518	Washc2 (MGP_PahariEiJ_G0022517)	Tmcc1 (MGP_PahariEiJ_G0022516)	Plxnd1 (MGP_PahariEiJ_G0022515)	H1f8 (MGP_PahariEiJ_G0022514)	Rho (MGP_PahariEiJ_G0022513)	Ift122 (MGP_PahariEiJ_G0022512)	MGP_PahariEiJ_G0022511	Efcab12 (MGP_PahariEiJ_G0022510)	MGP_PahariEiJ_G0022509 ##16	Cand2 (MGP_PahariEiJ_G0022508) #17	Tmem40 (MGP_PahariEiJ_G0022507) #18	Raf1 (MGP_PahariEiJ_G0022506) #19	Mkrn2 (MGP_PahariEiJ_G0022505) #20	Mkrn2os (MGP_PahariEiJ_G0022504) #22	Tsen2 (MGP_PahariEiJ_G0022503) #23	Pparg (MGP_PahariEiJ_G0022502) #24	Timp4 (MGP_PahariEiJ_G0022501) #26	MGP_PahariEiJ_G0022500	Syn2 (MGP_PahariEiJ_G0022499) #25	Tamm41 (MGP_PahariEiJ_G0022498) #27	Vgll4 (MGP_PahariEiJ_G0022497) #28	Atg7 (MGP_PahariEiJ_G0022496) #29	Hrh1 (MGP_PahariEiJ_G0022495)	Slc6a1 (MGP_PahariEiJ_G0022494) #30	Slc6a11 (MGP_PahariEiJ_G0022493) #31	Atp2b2 (MGP_PahariEiJ_G0022492) #32	Sec13 (MGP_PahariEiJ_G0022491) #33	Ghrl (MGP_PahariEiJ_G0022490) #34	Tatdn2 (MGP_PahariEiJ_G0022489) #35
Rat	MODERN SPECIES	14	Washc2c (ENSRNOG00000011653)	LOC680385 (ENSRNOG00000011606)	Tmcc1 (ENSRNOG00000011614)	AABR07061825.2 (ENSRNOG00000059964)	Plxnd1 (ENSRNOG00000025209)	H1f8 (ENSRNOG00000025251)	Rho (ENSRNOG00000011144)	Ift122 (ENSRNOG00000010952)	Mbd4 (ENSRNOG00000010919)	Efcab12 (ENSRNOG00000026176)	Rpl32 (ENSRNOG00000010746) ##16	Cand2 (ENSRNOG00000010473) #17	Tmem40 (ENSRNOG00000010430) #18	Raf1 (ENSRNOG00000010153) #19	Mkrn2 (ENSRNOG00000009176) #20	Mkrn2os (ENSRNOG00000070957) #22	Tsen2 (ENSRNOG00000060175) #23	Pparg (ENSRNOG00000008839) #24	Timp4 (ENSRNOG00000007955) #26	ENSRNOG00000069227	AC128901.1 (ENSRNOG00000028826)	ENSRNOG00000067395	Syn2 (ENSRNOG00000008157) #25	Tamm41 (ENSRNOG00000007874) #27	Vgll4 (ENSRNOG00000007822) #28	Atg7 (ENSRNOG00000007486) #29	ENSRNOG00000069624	LOC120102367 (ENSRNOG00000067090)	Hrh1 (ENSRNOG00000007420)	Slc6a1 (ENSRNOG00000006527) #30	Slc6a11 (ENSRNOG00000005697) #31
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707	Mrps25 (ENSNGAG00000021861)	Rbsn (ENSNGAG00000022967)	Trh (ENSNGAG00000022332)	Tmcc1 (ENSNGAG00000010573)	Plxnd1 (ENSNGAG00000020476)	H1f8 (ENSNGAG00000023630)	Rho (ENSNGAG00000020656)	Ift122 (ENSNGAG00000022462)	ENSNGAG00000017381	Efcab12 (ENSNGAG00000008314)	ENSNGAG00000024001 ##16	Cand2 (ENSNGAG00000024002) #17	Tmem40 (ENSNGAG00000021850) #18	Raf1 (ENSNGAG00000019548) #19	Mkrn2 (ENSNGAG00000012579) #20	Mkrn2os (ENSNGAG00000019573) #22	ENSNGAG00000013561 #23	Pparg (ENSNGAG00000014683) #24	Timp4 (ENSNGAG00000021746) #26	Syn2 (ENSNGAG00000022266) #25	Tamm41 (ENSNGAG00000013592) #27	Vgll4 (ENSNGAG00000013946) #28	ENSNGAG00000003030	Hrh1 (ENSNGAG00000021456)	Slc6a1 (ENSNGAG00000015663) #30	Slc6a11 (ENSNGAG00000013842) #31	Atp2b2 (ENSNGAG00000015473) #32	Sec13 (ENSNGAG00000003425) #33	Ghrl (ENSNGAG00000022045) #34	Tatdn2 (ENSNGAG00000011523) #35	Irak2 (ENSNGAG00000011088) #36
Lesser Egyptian jerboa	MODERN SPECIES	45	Mrps25 (ENSJJAG00000013413)	Rbsn (ENSJJAG00000024360)	ENSJJAG00000023012	Tmcc1 (ENSJJAG00000019999)	ENSJJAG00000020659	Plxnd1 (ENSJJAG00000014069)	ENSJJAG00000014828	Rho (ENSJJAG00000022285)	Ift122 (ENSJJAG00000020288)	ENSJJAG00000016695	ENSJJAG00000021233 ##16	Cand2 (ENSJJAG00000018247) #17	Tmem40 (ENSJJAG00000009444) #18	ENSJJAG00000016961 #19	Mkrn2 (ENSJJAG00000019765) #20	Mkrn2os (ENSJJAG00000022652) #22	ENSJJAG00000015646	ENSJJAG00000002861 #23	Pparg (ENSJJAG00000023734) #24	ENSJJAG00000012036	ENSJJAG00000015072 #25	Timp4 (ENSJJAG00000015654) #26	Tamm41 (ENSJJAG00000015841) #27	Vgll4 (ENSJJAG00000017532) #28	Atg7 (ENSJJAG00000021264) #29	Hrh1 (ENSJJAG00000012905)	Slc6a1 (ENSJJAG00000013717) #30	Slc6a11 (ENSJJAG00000008690) #31	Atp2b2 (ENSJJAG00000009628) #32	Sec13 (ENSJJAG00000023600) #33	Ghrl (ENSJJAG00000020141) #34
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000155189	ENSGT00940000160900	ENSGT00390000016951	ENSGT01020000230394.e.b.a	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00940000157312.h	ENSGT00940000157200	ENSGT00390000005378	ENSGT00390000006066	ENSGT00940000158804	ENSGT00390000003219	ENSGT00940000158155	ENSGT00950000182956.b.b.a.b	ENSGT00940000158225	ENSGT00940000161249	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857	ENSGT00940000155180.b	ENSGT00390000013224
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00940000157312.h	ENSGT00940000157200	ENSGT00390000005378	ENSGT00390000006066	ENSGT00940000158804	ENSGT00390000003219	ENSGT00940000158155	ENSGT00950000182956.b.b.a.b	ENSGT00940000158225	ENSGT00940000161249	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857	ENSGT00940000155180.b	ENSGT00390000013224
Long-tailed chinchilla	MODERN SPECIES	136	C3orf20 (ENSCLAG00000013841)	FGD5 (ENSCLAG00000011953)	NR2C2 (ENSCLAG00000011082)	MRPS25 (ENSCLAG00000008381)	RBSN (ENSCLAG00000011613)	TMCC1 (ENSCLAG00000014727)	PLXND1 (ENSCLAG00000012627)	RHO (ENSCLAG00000006233)	IFT122 (ENSCLAG00000006170)	MBD4 (ENSCLAG00000008974)	ENSCLAG00000007426 ##16	CAND2 (ENSCLAG00000007541) #17	TMEM40 (ENSCLAG00000009668) #18	RAF1 (ENSCLAG00000010316) #19	MKRN2 (ENSCLAG00000008755) #20	MKRN2OS (ENSCLAG00000009109) #22	ENSCLAG00000011764	FKBP4 (ENSCLAG00000013510)	ITFG2 (ENSCLAG00000016639)	TEX52 (ENSCLAG00000013429)	FOXM1 (ENSCLAG00000014183)	RHNO1 (ENSCLAG00000017326)	TULP3 (ENSCLAG00000017345)	TEAD4 (ENSCLAG00000012070)	ENSCLAG00000008194	ENSCLAG00000009091	FAM171A1 (ENSCLAG00000009809)	NMT2 (ENSCLAG00000008204)	RPP38 (ENSCLAG00000010194)	ACBD7 (ENSCLAG00000010962)	OLAH (ENSCLAG00000015435)
Degu	MODERN SPECIES	274	MRPS25 (ENSODEG00000001966)	NR2C2 (ENSODEG00000001892)	ENSODEG00000001861	ENSODEG00000001849	ENSODEG00000001772	TMCC1 (ENSODEG00000001710)	PLXND1 (ENSODEG00000003347)	RHO (ENSODEG00000003304)	IFT122 (ENSODEG00000003013)	ENSODEG00000002902	ENSODEG00000002891 ##16	CAND2 (ENSODEG00000002821) #17	TMEM40 (ENSODEG00000002755) #18	RAF1 (ENSODEG00000002734) #19	MKRN2 (ENSODEG00000002702) #20	MKRN2OS (ENSODEG00000002688) #22	ENSODEG00000002676	SLC6A11 (ENSODEG00000002665) #31	SLC6A1 (ENSODEG00000002644) #30	ATG7 (ENSODEG00000002299) #29	ENSODEG00000002124 #28	ENSODEG00000018794	TAMM41 (ENSODEG00000002076) #27	TIMP4 (ENSODEG00000002023) #26	ENSODEG00000001988 #25	PPARG (ENSODEG00000002659) #24	TSEN2 (ENSODEG00000002629) #23	ENSODEG00000002503	HMCES (ENSODEG00000002476)	ENSODEG00000018801	ENSODEG00000002441
Guinea pig	MODERN SPECIES	109	C3orf20 (ENSCPOG00000006783)	FGD5 (ENSCPOG00000013157)	NR2C2 (ENSCPOG00000001512)	MRPS25 (ENSCPOG00000020398)	RBSN (ENSCPOG00000003200)	TMCC1 (ENSCPOG00000009299)	PLXND1 (ENSCPOG00000004989)	RHO (ENSCPOG00000004984)	IFT122 (ENSCPOG00000004975)	ENSCPOG00000004970	RPL32 (ENSCPOG00000019967) ##16	CAND2 (ENSCPOG00000023286) #17	TMEM40 (ENSCPOG00000025632) #18	RAF1 (ENSCPOG00000001210) #19	MKRN2 (ENSCPOG00000001208) #20	MKRN2OS (ENSCPOG00000032819) #22	ENSCPOG00000009944	FKBP4 (ENSCPOG00000002453)	ITFG2 (ENSCPOG00000021230)	ENSCPOG00000005850	ENSCPOG00000031884	ARHGAP21 (ENSCPOG00000004505)	ENKUR (ENSCPOG00000009590)	ENSCPOG00000000291	GPR158 (ENSCPOG00000001565)	ENSCPOG00000034310	ENSCPOG00000013721	ENSCPOG00000039199	GAD2 (ENSCPOG00000013724)	APBB1IP (ENSCPOG00000004077)	PDSS1 (ENSCPOG00000026219)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000040044	ENSHGLG00000040416	RHO (ENSHGLG00000006668)	IFT122 (ENSHGLG00000009113)	MBD4 (ENSHGLG00000009034)	ENSHGLG00000015777	ENSHGLG00000040769 ##16	ENSHGLG00000015580 #17	ENSHGLG00000015498 #18	ENSHGLG00000033042	ENSHGLG00000039038	ENSHGLG00000032617	ENSHGLG00000037560	ENSHGLG00000018214 #19	ENSHGLG00000018194 #20	ENSHGLG00000017856 #22	ENSHGLG00000045316	ENSHGLG00000032284	ENSHGLG00000019586	ENSHGLG00000039046	ENSHGLG00000000920	GATA2 (ENSHGLG00000000985)	DNAJB8 (ENSHGLG00000046802)	ENSHGLG00000037886	ENSHGLG00000000094	ENSHGLG00000000122	ENSHGLG00000002369 #28	HRH1 (ENSHGLG00000044045)	ENSHGLG00000045274 #30	ENSHGLG00000000350 #31	ENSHGLG00000041351
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Marmotini	ANCESTRAL SPECIES	49	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00960000190360	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Marmotini_b	ANCESTRAL SPECIES	62	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00960000190360	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Arctic ground squirrel	MODERN SPECIES	23	RBSN (ENSUPAG00010000555)	TRH (ENSUPAG00010000545)	TMCC1 (ENSUPAG00010000491)	PLXND1 (ENSUPAG00010000023)	H1-8 (ENSUPAG00010023069)	RHO (ENSUPAG00010023066)	IFT122 (ENSUPAG00010023058)	ENSUPAG00010023053	ENSUPAG00010023052	EFCAB12 (ENSUPAG00010023049)	ENSUPAG00010023046 ##16	CAND2 (ENSUPAG00010023044) #17	TMEM40 (ENSUPAG00010023040) #18	RAF1 (ENSUPAG00010023038) #19	MKRN2 (ENSUPAG00010023036) #20	MKRN2OS (ENSUPAG00010023035) #22	TSEN2 (ENSUPAG00010023034) #23	PPARG (ENSUPAG00010023031) #24	TIMP4 (ENSUPAG00010023029) #26	SYN2 (ENSUPAG00010023028) #25	ENSUPAG00010023027 #27	VGLL4 (ENSUPAG00010023024) #28	ATG7 (ENSUPAG00010023011) #29	HRH1 (ENSUPAG00010023010)	ENSUPAG00010023009	SLC6A1 (ENSUPAG00010023006) #30	SLC6A11 (ENSUPAG00010023004) #31	ATP2B2 (ENSUPAG00010022999) #32	SEC13 (ENSUPAG00010022998) #33	GHRL (ENSUPAG00010022997) #34	TATDN2 (ENSUPAG00010022994) #35
Squirrel	MODERN SPECIES	202	C3orf20 (ENSSTOG00000002907)	FGD5 (ENSSTOG00000005202)	NR2C2 (ENSSTOG00000005250)	MRPS25 (ENSSTOG00000030962)	RBSN (ENSSTOG00000022986)	TRH (ENSSTOG00000026247)	TMCC1 (ENSSTOG00000019869)	PLXND1 (ENSSTOG00000024621)	RHO (ENSSTOG00000028352)	IFT122 (ENSSTOG00000004353)	MBD4 (ENSSTOG00000020663)	ENSSTOG00000026505 ##16	CAND2 (ENSSTOG00000023136) #17	RAF1 (ENSSTOG00000025146) #19	MKRN2 (ENSSTOG00000010520) #20	MKRN2OS (ENSSTOG00000031428) #22	TSEN2 (ENSSTOG00000000538) #23	PPARG (ENSSTOG00000012778) #24	SYN2 (ENSSTOG00000011519) #25	TIMP4 (ENSSTOG00000034531) #26	ENSSTOG00000028589	VGLL4 (ENSSTOG00000025247) #28	ATG7 (ENSSTOG00000015288) #29	HRH1 (ENSSTOG00000015286)	SLC6A1 (ENSSTOG00000007598) #30	SLC6A11 (ENSSTOG00000028999) #31	ATP2B2 (ENSSTOG00000014026) #32	SEC13 (ENSSTOG00000014017) #33	GHRL (ENSSTOG00000022095) #34	TATDN2 (ENSSTOG00000013999) #35	IRAK2 (ENSSTOG00000013972) #36
Alpin marmot	MODERN SPECIES	40	MRPS25 (ENSMMMG00000011452)	RBSN (ENSMMMG00000011435)	TRH (ENSMMMG00000011424)	TMCC1 (ENSMMMG00000011365)	ENSMMMG00000011319	ENSMMMG00000011299	RHO (ENSMMMG00000011272)	IFT122 (ENSMMMG00000011068)	MBD4 (ENSMMMG00000011043)	EFCAB12 (ENSMMMG00000011023)	ENSMMMG00000010997 ##16	ENSMMMG00000010993 #17	RAF1 (ENSMMMG00000010957) #19	ENSMMMG00000010950	MKRN2 (ENSMMMG00000010927) #20	MKRN2OS (ENSMMMG00000010915) #22	ENSMMMG00000010907 #23	ENSMMMG00000010899 #23	PPARG (ENSMMMG00000010840) #24	ENSMMMG00000010687 #26	SYN2 (ENSMMMG00000010440) #25	TAMM41 (ENSMMMG00000010322) #27	VGLL4 (ENSMMMG00000010304) #28	ATG7 (ENSMMMG00000009966) #29	ENSMMMG00000009925	HRH1 (ENSMMMG00000009921)	ENSMMMG00000009895	SLC6A1 (ENSMMMG00000009856) #30	SLC6A11 (ENSMMMG00000009836) #31	ATP2B2 (ENSMMMG00000009587) #32	SEC13 (ENSMMMG00000009563) #33
Eurasian red squirrel	MODERN SPECIES	10	RBSN (ENSSVLG00005018031)	TRH (ENSSVLG00005018181)	ENSSVLG00005018231	TMCC1 (ENSSVLG00005018250)	PLXND1 (ENSSVLG00005018384)	ENSSVLG00005018771	RHO (ENSSVLG00005018827)	IFT122 (ENSSVLG00005018941)	MBD4 (ENSSVLG00005019308)	EFCAB12 (ENSSVLG00005019404)	ENSSVLG00005019450 ##16	CAND2 (ENSSVLG00005019570) #17	TMEM40 (ENSSVLG00005019760) #18	ENSSVLG00005019978 #19	MKRN2 (ENSSVLG00005020340) #20	MKRN2OS (ENSSVLG00005020454) #22	TSEN2 (ENSSVLG00005020543) #23	PPARG (ENSSVLG00005020780) #24	SYN2 (ENSSVLG00005021130) #25	TIMP4 (ENSSVLG00005021374) #26	TAMM41 (ENSSVLG00005021448) #27	ENSSVLG00005021494	VGLL4 (ENSSVLG00005021566) #28	ATG7 (ENSSVLG00005021683) #29	HRH1 (ENSSVLG00005021749)	SLC6A1 (ENSSVLG00005021844) #30	SLC6A11 (ENSSVLG00005022396) #31	ATP2B2 (ENSSVLG00005022802) #32	SEC13 (ENSSVLG00005023877) #33	GHRL (ENSSVLG00005023970) #34	TATDN2 (ENSSVLG00005024031) #35
Lagomorpha	ANCESTRAL SPECIES	105	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000156027 #30	ENSGT00940000157569 #31
Rabbit	MODERN SPECIES	20	MRPS25 (ENSOCUG00000006984)	RBSN (ENSOCUG00000006988)	TRH (ENSOCUG00000006337)	TMCC1 (ENSOCUG00000013071)	PLXND1 (ENSOCUG00000013049)	ENSOCUG00000029379	RHO (ENSOCUG00000013036)	IFT122 (ENSOCUG00000013015)	MBD4 (ENSOCUG00000013006)	ENSOCUG00000012999	ENSOCUG00000023407 #16	CAND2 (ENSOCUG00000009266) #17	ENSOCUG00000031173 #18	RAF1 (ENSOCUG00000014175) #19	MKRN2 (ENSOCUG00000014171) #20	MKRN2OS (ENSOCUG00000033126) #22	TSEN2 (ENSOCUG00000013203) #23	PPARG (ENSOCUG00000013194) #24	ENSOCUG00000015932 #25	TIMP4 (ENSOCUG00000015952) #26	VGLL4 (ENSOCUG00000001911) #28	ATG7 (ENSOCUG00000001908) #29	ENSOCUG00000025657 #30	SLC6A11 (ENSOCUG00000001627) #31	LZTFL1 (ENSOCUG00000010140)	SLC6A20 (ENSOCUG00000004216)	SACM1L (ENSOCUG00000026080)	LIMD1 (ENSOCUG00000001984)	ENSOCUG00000024922	LARS2 (ENSOCUG00000001964)	CDCP1 (ENSOCUG00000006910)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00930000152979	ENSGT00940000175447	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.`b #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35	ENSGT00940000159835 #36
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.`b #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35	ENSGT00940000159835 #36
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00640000091558.n	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.`b #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35	ENSGT00940000159835 #36
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00640000091558.n	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.`b #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35	ENSGT00940000159835 #36
Vaquita	MODERN SPECIES	2	RBSN (ENSPSNG00000022712)	TRH (ENSPSNG00000022713)	ENSPSNG00000022714	ENSPSNG00000022717	PLXND1 (ENSPSNG00000022718)	H1-8 (ENSPSNG00000022719)	RHO (ENSPSNG00000022720)	IFT122 (ENSPSNG00000022721)	MBD4 (ENSPSNG00000022722)	EFCAB12 (ENSPSNG00000022723)	RPL32 (ENSPSNG00000022724) ##16	CAND2 (ENSPSNG00000009832) #17	TMEM40 (ENSPSNG00000010002) #18	RAF1 (ENSPSNG00000010184) #19	MKRN2 (ENSPSNG00000010288) #20	MKRN2OS (ENSPSNG00000010409) #22	TSEN2 (ENSPSNG00000010460) #23	PPARG (ENSPSNG00000010554) #24	SYN2 (ENSPSNG00000010964) #25	TIMP4 (ENSPSNG00000011214) #26	TAMM41 (ENSPSNG00000011313) #27	VGLL4 (ENSPSNG00000011411) #28	ATG7 (ENSPSNG00000011678) #29	HRH1 (ENSPSNG00000012320)	SLC6A1 (ENSPSNG00000012418) #30	SLC6A11 (ENSPSNG00000013275) #31	ATP2B2 (ENSPSNG00000013827) #32	ENSPSNG00000015998 #33	GHRL (ENSPSNG00000016272) #34	TATDN2 (ENSPSNG00000016441) #35	IRAK2 (ENSPSNG00000016489) #36
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00640000091558.n	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B.`b #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35	ENSGT00940000159835 #36
Narwhal	MODERN SPECIES	310	ENSMMNG00015012540	RBSN (ENSMMNG00015012525)	TRH (ENSMMNG00015012517)	TMCC1 (ENSMMNG00015012483)	PLXND1 (ENSMMNG00015012370)	H1-8 (ENSMMNG00015012313)	RHO (ENSMMNG00015012293)	IFT122 (ENSMMNG00015012203)	MBD4 (ENSMMNG00015012156)	EFCAB12 (ENSMMNG00015012144)	RPL32 (ENSMMNG00015012118) #16	CAND2 (ENSMMNG00015012039) #17	TMEM40 (ENSMMNG00015012000) #18	RAF1 (ENSMMNG00015011951) #19	MKRN2 (ENSMMNG00015011904) #20	MKRN2OS (ENSMMNG00015011881) #22	TSEN2 (ENSMMNG00015011810) #23	PPARG (ENSMMNG00015011771) #24	TIMP4 (ENSMMNG00015011737) #26	SYN2 (ENSMMNG00015011708) #25	TAMM41 (ENSMMNG00015011672) #27	VGLL4 (ENSMMNG00015011616) #28	ATG7 (ENSMMNG00015011505) #29	HRH1 (ENSMMNG00015011469)	SLC6A1 (ENSMMNG00015011419) #30	SLC6A11 (ENSMMNG00015011359) #31	ENSMMNG00015011333	ATP2B2 (ENSMMNG00015011282) #32	SEC13 (ENSMMNG00015011196) #33	GHRL (ENSMMNG00015011143) #34	TATDN2 (ENSMMNG00015011101) #35
Sperm whale	MODERN SPECIES	9	RBSN (ENSPCTG00005005519)	TMCC1 (ENSPCTG00005005558)	ENSPCTG00005005601	TRH (ENSPCTG00005005621)	ENSPCTG00005005684	ENSPCTG00005005647	H1-8 (ENSPCTG00005005747)	RHO (ENSPCTG00005005781)	IFT122 (ENSPCTG00005005825)	MBD4 (ENSPCTG00005005918)	EFCAB12 (ENSPCTG00005005960)	ENSPCTG00005006016 ##16	ENSPCTG00005006042 #17	RAF1 (ENSPCTG00005006081) #19	MKRN2 (ENSPCTG00005006141) #20	MKRN2OS (ENSPCTG00005006199) #22	PPARG (ENSPCTG00005006236) #24	SYN2 (ENSPCTG00005006330) #25	TIMP4 (ENSPCTG00005006355) #26	TAMM41 (ENSPCTG00005006384) #27	VGLL4 (ENSPCTG00005006432) #28	ATG7 (ENSPCTG00005006565) #29	HRH1 (ENSPCTG00005006823)	SLC6A1 (ENSPCTG00005006885) #30	SLC6A11 (ENSPCTG00005007501) #31	SEC13 (ENSPCTG00005007576) #33	GHRL (ENSPCTG00005007648) #34	TATDN2 (ENSPCTG00005007678) #35	IRAK2 (ENSPCTG00005007701) #36	ENSPCTG00005007736 #37	BRK1 (ENSPCTG00005007752)
Blue whale	MODERN SPECIES	2	RBSN (ENSBMSG00010010963)	TRH (ENSBMSG00010010946)	TMCC1 (ENSBMSG00010010919)	PLXND1 (ENSBMSG00010010833)	ENSBMSG00010010803	RHO (ENSBMSG00010010727)	IFT122 (ENSBMSG00010010593)	ENSBMSG00010010542	ENSBMSG00010010533	EFCAB12 (ENSBMSG00010010503)	RPL32 (ENSBMSG00010010483) #16	CAND2 (ENSBMSG00010010467) #17	TMEM40 (ENSBMSG00010010438) #18	RAF1 (ENSBMSG00010010408) #19	MKRN2 (ENSBMSG00010010365) #20	MKRN2OS (ENSBMSG00010010343) #22	TSEN2 (ENSBMSG00010010317) #23	PPARG (ENSBMSG00010010135) #24	TIMP4 (ENSBMSG00010010106) #26	SYN2 (ENSBMSG00010010076) #25	TAMM41 (ENSBMSG00010010044) #27	ENSBMSG00010010031	ENSBMSG00010009994 #28	ATG7 (ENSBMSG00010009931) #29	HRH1 (ENSBMSG00010009905)	ENSBMSG00010009900	SLC6A1 (ENSBMSG00010009806) #30	SLC6A11 (ENSBMSG00010009702) #31	ATP2B2 (ENSBMSG00010008618) #32	SEC13 (ENSBMSG00010008420) #33	ENSBMSG00010008375 #34
Pecora	ANCESTRAL SPECIES	17	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.b #35
Yarkand deer	MODERN SPECIES	16	TRH (ENSCHYG00000017738)	TMCC1 (ENSCHYG00000017484)	ENSCHYG00000017294	H1-8 (ENSCHYG00000017241)	RHO (ENSCHYG00000017188)	IFT122 (ENSCHYG00000015047)	MBD4 (ENSCHYG00000014755)	EFCAB12 (ENSCHYG00000014606)	ENSCHYG00000014488 ##16	ENSCHYG00000014472	CAND2 (ENSCHYG00000014141) #17	TMEM40 (ENSCHYG00000013848) #18	ENSCHYG00000013805	RAF1 (ENSCHYG00000025496) #19	MKRN2 (ENSCHYG00000025428) #20	MKRN2OS (ENSCHYG00000025406) #22	TSEN2 (ENSCHYG00000025333) #23	PPARG (ENSCHYG00000025198) #24	TIMP4 (ENSCHYG00000025170) #26	ENSCHYG00000025128 #25	RBSN (ENSCHYG00000025089)	ENSCHYG00000025047	NR2C2 (ENSCHYG00000024864)	FGD5 (ENSCHYG00000024639)	C3orf20 (ENSCHYG00000024531)	ENSCHYG00000024372	GRIP2 (ENSCHYG00000024067)	SLC6A6 (ENSCHYG00000023942)	LSM3 (ENSCHYG00000023916)	XPC (ENSCHYG00000023838)	TMEM43 (ENSCHYG00000023737)
Percora_a	ANCESTRAL SPECIES	19	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.b #35
Bovidae	ANCESTRAL SPECIES	19	ENSGT00390000003282.B #28	ENSGT00390000000616.k #27	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616.l #27	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194
Caprinae	ANCESTRAL SPECIES	15	ENSGT00390000003282.B #28	ENSGT00390000000616.k #27	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616.l #27	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194
Goat	MODERN SPECIES	14	VGLL4 (ENSCHIG00000019976) #28	ENSCHIG00000002443 #27	TRH (ENSCHIG00000025325)	ENSCHIG00000015861	ENSCHIG00000016746	PLXND1 (ENSCHIG00000008763)	H1-8 (ENSCHIG00000015286)	RHO (ENSCHIG00000019086)	IFT122 (ENSCHIG00000018009)	MBD4 (ENSCHIG00000009760)	EFCAB12 (ENSCHIG00000024180)	RPL32 (ENSCHIG00000011099) ##16	CAND2 (ENSCHIG00000017799) #17	RAF1 (ENSCHIG00000006954) #19	MKRN2 (ENSCHIG00000021098) #20	MKRN2OS (ENSCHIG00000013445) #22	TSEN2 (ENSCHIG00000013772) #23	PPARG (ENSCHIG00000015877) #24	SYN2 (ENSCHIG00000024912) #25	TIMP4 (ENSCHIG00000017995) #26	ENSCHIG00000027078 #27	RBSN (ENSCHIG00000019361)	MRPS25 (ENSCHIG00000009931)	NR2C2 (ENSCHIG00000008676)	FGD5 (ENSCHIG00000023792)	C3orf20 (ENSCHIG00000009719)	CCDC174 (ENSCHIG00000008286)	GRIP2 (ENSCHIG00000016620)	SLC6A6 (ENSCHIG00000024785)	LSM3 (ENSCHIG00000024650)	XPC (ENSCHIG00000017709)
Rambouillet Sheep	MODERN SPECIES	10	ENSOARG00020025707	TAMM41 (ENSOARG00020025710) #27	TRH (ENSOARG00020025716)	TMCC1 (ENSOARG00020025721)	PLXND1 (ENSOARG00020025735)	ENSOARG00020025760	RHO (ENSOARG00020025763)	IFT122 (ENSOARG00020025765)	MBD4 (ENSOARG00020025769)	EFCAB12 (ENSOARG00020025775)	RPL32 (ENSOARG00020025785) ##16	CAND2 (ENSOARG00020025794) #17	TMEM40 (ENSOARG00020025803) #18	RAF1 (ENSOARG00020025810) #19	MKRN2 (ENSOARG00020025818) #20	MKRN2OS (ENSOARG00020025824) #22	TSEN2 (ENSOARG00020025828) #23	PPARG (ENSOARG00020025834) #24	SYN2 (ENSOARG00020025846) #25	ENSOARG00020025856 #26	RBSN (ENSOARG00020025862)	MRPS25 (ENSOARG00020025871)	NR2C2 (ENSOARG00020025878)	C3orf20 (ENSOARG00020025893)	CCDC174 (ENSOARG00020025904)	GRIP2 (ENSOARG00020025919)	SLC6A6 (ENSOARG00020025943)	ENSOARG00020025950	TMEM43 (ENSOARG00020025957)	CHCHD4 (ENSOARG00020025962)	ENSOARG00020025966
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000016951	ENSGT00940000155189	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616.l #27	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194
Bos	ANCESTRAL SPECIES	16	ENSGT00390000016951	ENSGT00940000155189	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616.l #27	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194
Bos_b	ANCESTRAL SPECIES	17	ENSGT00390000003282.B #28	ENSGT00390000000616.k #27	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616.l #27	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194
Hybrid Bos Indicus	MODERN SPECIES	14	ENSBIXG00005025048 #28	TRH (ENSBIXG00005025098)	ENSBIXG00005025108	ENSBIXG00005025137	TMCC1 (ENSBIXG00005025216)	PLXND1 (ENSBIXG00005025560)	ENSBIXG00005025593	RHO (ENSBIXG00005025616)	IFT122 (ENSBIXG00005025735)	MBD4 (ENSBIXG00005025831)	RPL32 (ENSBIXG00005025898) ##16	CAND2 (ENSBIXG00005025955) #17	TMEM40 (ENSBIXG00005026020) #18	RAF1 (ENSBIXG00005004450) #19	MKRN2 (ENSBIXG00005026143) #20	MKRN2OS (ENSBIXG00005026155) #22	ENSBIXG00005026465 #24	TIMP4 (ENSBIXG00005026516) #26	SYN2 (ENSBIXG00005026582) #25	RBSN (ENSBIXG00005026693)	MRPS25 (ENSBIXG00005026733)	NR2C2 (ENSBIXG00005026766)	FGD5 (ENSBIXG00005027347)	C3orf20 (ENSBIXG00005027421)	CCDC174 (ENSBIXG00005027454)	ENSBIXG00005027475	ENSBIXG00005027488	GRIP2 (ENSBIXG00005027668)	SLC6A6 (ENSBIXG00005027782)	LSM3 (ENSBIXG00005027836)	TMEM43 (ENSBIXG00005027897)
Cow	MODERN SPECIES	14	VGLL4 (ENSBTAG00000018600) #28	TAMM41 (ENSBTAG00000003328) #27	TRH (ENSBTAG00000005306)	TMCC1 (ENSBTAG00000006614)	PLXND1 (ENSBTAG00000001814)	H1-8 (ENSBTAG00000001812)	RHO (ENSBTAG00000001310)	IFT122 (ENSBTAG00000019121)	MBD4 (ENSBTAG00000021645)	EFCAB12 (ENSBTAG00000021643)	RPL32 (ENSBTAG00000015283) ##16	CAND2 (ENSBTAG00000015273) #17	TMEM40 (ENSBTAG00000000161) #18	RAF1 (ENSBTAG00000045748) #19	MKRN2 (ENSBTAG00000004512) #20	MKRN2OS (ENSBTAG00000024991) #22	TSEN2 (ENSBTAG00000037980) #23	PPARG (ENSBTAG00000001333) #24	SYN2 (ENSBTAG00000020260) #25	TIMP4 (ENSBTAG00000020263) #26	ENSBTAG00000031115 #27	RBSN (ENSBTAG00000013725)	MRPS25 (ENSBTAG00000013723)	NR2C2 (ENSBTAG00000013716)	FGD5 (ENSBTAG00000006789)	C22H3orf20 (ENSBTAG00000040133)	CCDC174 (ENSBTAG00000038298)	GRIP2 (ENSBTAG00000011896)	SLC6A6 (ENSBTAG00000011088)	LSM3 (ENSBTAG00000007363)	XPC (ENSBTAG00000007362)
Bos_a	ANCESTRAL SPECIES	9	ENSGT00390000000616.k #27	ENSGT00390000016951	ENSGT00940000155189	ENSGT00930000152979	ENSGT00940000175447	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000007159	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132
Wild yak	MODERN SPECIES	1473	TRH (ENSBMUG00000009602)	ENSBMUG00000009609	TMCC1 (ENSBMUG00000009638)	ENSBMUG00000009719	ENSBMUG00000009729	RHO (ENSBMUG00000009767)	IFT122 (ENSBMUG00000010042)	MBD4 (ENSBMUG00000010711)	EFCAB12 (ENSBMUG00000010745)	RPL32 (ENSBMUG00000010768) ##16	CAND2 (ENSBMUG00000010855) #17	TMEM40 (ENSBMUG00000010953) #18	ENSBMUG00000010983	RAF1 (ENSBMUG00000011029) #19	MKRN2 (ENSBMUG00000011049) #20	MKRN2OS (ENSBMUG00000011070) #22	PPARG (ENSBMUG00000011177) #24	SYN2 (ENSBMUG00000011214) #25	ENSBMUG00000011252 #26
Domestic yak	MODERN SPECIES	14	TRH (ENSBGRG00000024598)	ENSBGRG00000024583	TMCC1 (ENSBGRG00000024493)	ENSBGRG00000024462	ENSBGRG00000024437	ENSBGRG00000024409	RHO (ENSBGRG00000024373)	IFT122 (ENSBGRG00000023990)	MBD4 (ENSBGRG00000023851)	EFCAB12 (ENSBGRG00000023675)	RPL32 (ENSBGRG00000023548) ##16	CAND2 (ENSBGRG00000023333) #17	TMEM40 (ENSBGRG00000023210) #18	RAF1 (ENSBGRG00000022891) #19	MKRN2 (ENSBGRG00000022735) #20	MKRN2OS (ENSBGRG00000022696) #22	ENSBGRG00000022315 #24	TIMP4 (ENSBGRG00000022226) #26	SYN2 (ENSBGRG00000021920) #25	RBSN (ENSBGRG00000021762)	MRPS25 (ENSBGRG00000021676)	NR2C2 (ENSBGRG00000021614)	FGD5 (ENSBGRG00000021386)	C3orf20 (ENSBGRG00000021321)	CCDC174 (ENSBGRG00000021048)	GRIP2 (ENSBGRG00000020144)	SLC6A6 (ENSBGRG00000019545)	ENSBGRG00000019432	XPC (ENSBGRG00000018846)	TMEM43 (ENSBGRG00000018668)	CHCHD4 (ENSBGRG00000018588)
American bison	MODERN SPECIES	3340	TAMM41 (ENSBBBG00000012063) #27	TRH (ENSBBBG00000012040)	ENSBBBG00000012036	TMCC1 (ENSBBBG00000012034)	ENSBBBG00000012012	ENSBBBG00000012007	RHO (ENSBBBG00000012003)	IFT122 (ENSBBBG00000002240)	MBD4 (ENSBBBG00000011698)	EFCAB12 (ENSBBBG00000011681)	RPL32 (ENSBBBG00000002148) ##16	CAND2 (ENSBBBG00000002144) #17	TMEM40 (ENSBBBG00000011569) #18	RAF1 (ENSBBBG00000011493) #19	MKRN2 (ENSBBBG00000011440) #20	MKRN2OS (ENSBBBG00000006934) #22	TSEN2 (ENSBBBG00000002087) #23	PPARG (ENSBBBG00000011336) #24	SYN2 (ENSBBBG00000011280) #25	TIMP4 (ENSBBBG00000011264) #26	RBSN (ENSBBBG00000011250)	MRPS25 (ENSBBBG00000011234)	NR2C2 (ENSBBBG00000011226)	C3orf20 (ENSBBBG00000011153)	CCDC174 (ENSBBBG00000002003)	GRIP2 (ENSBBBG00000011088)	SLC6A6 (ENSBBBG00000010987)	LSM3 (ENSBBBG00000007967)	XPC (ENSBBBG00000001954)	TMEM43 (ENSBBBG00000010956)	CHCHD4 (ENSBBBG00000010930)
Siberian musk deer	MODERN SPECIES	1221	RBSN (ENSMMSG00000024056)	TRH (ENSMMSG00000024061)	ENSMMSG00000024063	TMCC1 (ENSMMSG00000024064)	PLXND1 (ENSMMSG00000024073)	ENSMMSG00000024082	RHO (ENSMMSG00000024086)	IFT122 (ENSMMSG00000024092)	MBD4 (ENSMMSG00000024114)	EFCAB12 (ENSMMSG00000024116)	RPL32 (ENSMMSG00000024124) ##16	CAND2 (ENSMMSG00000024132) #17	TMEM40 (ENSMMSG00000024144) #18	RAF1 (ENSMMSG00000024157) #19	MKRN2 (ENSMMSG00000014895) #20	MKRN2OS (ENSMMSG00000014926) #22	TSEN2 (ENSMMSG00000014963) #23	PPARG (ENSMMSG00000015004) #24	SYN2 (ENSMMSG00000015141) #25	TIMP4 (ENSMMSG00000015209) #26	TAMM41 (ENSMMSG00000015235) #27	VGLL4 (ENSMMSG00000015264) #28	ATG7 (ENSMMSG00000015338) #29	HRH1 (ENSMMSG00000015454)	SLC6A1 (ENSMMSG00000015486) #30	SLC6A11 (ENSMMSG00000015601) #31	ATP2B2 (ENSMMSG00000015764) #32	SEC13 (ENSMMSG00000018353) #33	ENSMMSG00000018446 #34	TMEM42 (ENSMMSG00000018480)	ENSMMSG00000018519
Camelidae	ANCESTRAL SPECIES	7	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.b ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35	ENSGT00940000159835 #36
Arabian camel	MODERN SPECIES	8	TRH (ENSCDRG00005003364)	TMCC1 (ENSCDRG00005018594)	PLXND1 (ENSCDRG00005018551)	ENSCDRG00005018533	ENSCDRG00005018504	ENSCDRG00005018477	RHO (ENSCDRG00005018442)	IFT122 (ENSCDRG00005018267)	MBD4 (ENSCDRG00005018206)	EFCAB12 (ENSCDRG00005018119)	ENSCDRG00005018038 ##16	CAND2 (ENSCDRG00005017872) #17	TMEM40 (ENSCDRG00005017673) #18	RAF1 (ENSCDRG00005017576) #19	MKRN2 (ENSCDRG00005017406) #20	MKRN2OS (ENSCDRG00005017382) #22	TSEN2 (ENSCDRG00005017293) #23	PPARG (ENSCDRG00005017141) #24	TIMP4 (ENSCDRG00005017087) #26	SYN2 (ENSCDRG00005017059) #25	TAMM41 (ENSCDRG00005016988) #27	VGLL4 (ENSCDRG00005016647) #28	ATG7 (ENSCDRG00005016438) #29	HRH1 (ENSCDRG00005016405)	SLC6A1 (ENSCDRG00005016134) #30	SLC6A11 (ENSCDRG00005015983) #31	ATP2B2 (ENSCDRG00005015469) #32	SEC13 (ENSCDRG00005015206) #33	GHRL (ENSCDRG00005015107) #34	TATDN2 (ENSCDRG00005015003) #35	IRAK2 (ENSCDRG00005014940) #36
Suina	ANCESTRAL SPECIES	1	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00910000147252	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a.a #35
Pig	MODERN SPECIES	4	ENSSSCG00000040441	TMCC1 (ENSSSCG00000011593)	PLXND1 (ENSSSCG00000011592)	H1-8 (ENSSSCG00000011591)	RHO (ENSSSCG00000011590)	IFT122 (ENSSSCG00000011589)	MBD4 (ENSSSCG00000033303)	EFCAB12 (ENSSSCG00000011587)	RPL32 (ENSSSCG00000035811) ##16	CAND2 (ENSSSCG00000011582) #17	TMEM40 (ENSSSCG00000011583) #18	ENSSSCG00000056163	RAF1 (ENSSSCG00000024453) #19	MKRN2 (ENSSSCG00000029877) #20	ENSSSCG00000045850	MKRN2OS (ENSSSCG00000011581) #22	TSEN2 (ENSSSCG00000011580) #23	PPARG (ENSSSCG00000011579) #24	TIMP4 (ENSSSCG00000033000) #26	SYN2 (ENSSSCG00000023225) #25	TAMM41 (ENSSSCG00000011578) #27	VGLL4 (ENSSSCG00000030581) #28	ATG7 (ENSSSCG00000011575) #29	HRH1 (ENSSSCG00000011576)	SLC6A1 (ENSSSCG00000011577) #30	SLC6A11 (ENSSSCG00000039850) #31	ATP2B2 (ENSSSCG00000023084) #32	SEC13 (ENSSSCG00000011572) #33	GHRL (ENSSSCG00000011568) #34	TATDN2 (ENSSSCG00000011569) #35	IRAK2 (ENSSSCG00000011570) #36
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00940000153973.c.a.b.a.b ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Canidae	ANCESTRAL SPECIES		ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.a.b ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00940000162517.e.b.b	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000007159	ENSGT00390000016951	ENSGT00950000183087.A.a.a.b.p.a.a	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.a.b ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00940000162517.e.b.b	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Dingo	MODERN SPECIES	236	ENSCAFG00020006358	ENSCAFG00020006362	ENSCAFG00020006372	PLXND1 (ENSCAFG00020006389)	H1-8 (ENSCAFG00020006486)	RHO (ENSCAFG00020006492)	IFT122 (ENSCAFG00020006537)	MBD4 (ENSCAFG00020007082)	EFCAB12 (ENSCAFG00020007096)	RPL32 (ENSCAFG00020007109) ##16	CAND2 (ENSCAFG00020007135) #17	TMEM40 (ENSCAFG00020007225) #18	RAF1 (ENSCAFG00020007230) #19	MKRN2 (ENSCAFG00020007243) #20	ENSCAFG00020007244	MKRN2OS (ENSCAFG00020007247) #22	TSEN2 (ENSCAFG00020007250) #23	PPARG (ENSCAFG00020007261) #24	SYN2 (ENSCAFG00020007281) #25	TIMP4 (ENSCAFG00020007541) #26	TAMM41 (ENSCAFG00020007562) #27	ENSCAFG00020007566	VGLL4 (ENSCAFG00020007573) #28	ATG7 (ENSCAFG00020007592) #29	HRH1 (ENSCAFG00020007622)	SLC6A1 (ENSCAFG00020007634) #30	SLC6A11 (ENSCAFG00020007842) #31	ATP2B2 (ENSCAFG00020007890) #32	SEC13 (ENSCAFG00020008342) #33	GHRL (ENSCAFG00020008352) #34	TATDN2 (ENSCAFG00020008366) #35
Dog	MODERN SPECIES	12	TMCC1 (ENSCAFG00845026698)	RPL26 (ENSCAFG00845026761)	PLXND1 (ENSCAFG00845026992)	H1-8 (ENSCAFG00845027541)	RHO (ENSCAFG00845027581)	IFT122 (ENSCAFG00845027707)	MBD4 (ENSCAFG00845028304)	ENSCAFG00845028379	RPL32 (ENSCAFG00845028446) ##16	CAND2 (ENSCAFG00845028524) #17	TMEM40 (ENSCAFG00845028589) #18	RAF1 (ENSCAFG00845028676) #19	ENSCAFG00845028720	MKRN2 (ENSCAFG00845028765) #20	ENSCAFG00845028837	MKRN2OS (ENSCAFG00845028857) #22	TSEN2 (ENSCAFG00845028923) #23	PPARG (ENSCAFG00845029007) #24	SYN2 (ENSCAFG00845029109) #25	TIMP4 (ENSCAFG00845029189) #26	TAMM41 (ENSCAFG00845005937) #27	ENSCAFG00845005976	VGLL4 (ENSCAFG00845006044) #28	ATG7 (ENSCAFG00845006288) #29	HRH1 (ENSCAFG00845006605)	SLC6A1 (ENSCAFG00845006668) #30	SLC6A11 (ENSCAFG00845006781) #31	ATP2B2 (ENSCAFG00845007221) #32	SEC13 (ENSCAFG00845007748) #33	GHRL (ENSCAFG00845007901) #34	TATDN2 (ENSCAFG00845007966) #35
Red fox	MODERN SPECIES	130	TMCC1 (ENSVVUG00000013886)	PLXND1 (ENSVVUG00000013916)	H1-8 (ENSVVUG00000014145)	RHO (ENSVVUG00000014149)	IFT122 (ENSVVUG00000014184)	MBD4 (ENSVVUG00000014222)	EFCAB12 (ENSVVUG00000014226)	RPL32 (ENSVVUG00000014231) ##16	CAND2 (ENSVVUG00000014272) #17	ENSVVUG00000015228	RAF1 (ENSVVUG00000015233) #19	MKRN2 (ENSVVUG00000015240) #20	ENSVVUG00000015242	ENSVVUG00000015244	ENSVVUG00000015247	ENSVVUG00000015251 #22	TSEN2 (ENSVVUG00000015253) #23	PPARG (ENSVVUG00000015266) #24	ENSVVUG00000015270	SYN2 (ENSVVUG00000015294) #25	TIMP4 (ENSVVUG00000015655) #26	ENSVVUG00000015666	TAMM41 (ENSVVUG00000015667) #27	ENSVVUG00000015670	VGLL4 (ENSVVUG00000015675) #28	ATG7 (ENSVVUG00000015693) #29	HRH1 (ENSVVUG00000015819)	SLC6A1 (ENSVVUG00000015829) #30	SLC6A11 (ENSVVUG00000015910) #31	ATP2B2 (ENSVVUG00000017082) #32	SEC13 (ENSVVUG00000023379) #33
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Giant Panda	MODERN SPECIES	14	TRH (ENSAMEG00000025033)	TMCC1 (ENSAMEG00000004384)	PLXND1 (ENSAMEG00000004387)	H1-8 (ENSAMEG00000004448)	RHO (ENSAMEG00000004453)	IFT122 (ENSAMEG00000004471)	ENSAMEG00000030948	MBD4 (ENSAMEG00000004562)	ENSAMEG00000004574	RPL32 (ENSAMEG00000004583) #16	CAND2 (ENSAMEG00000004596) #17	TMEM40 (ENSAMEG00000004646) #18	ENSAMEG00000025362	RAF1 (ENSAMEG00000004650) #19	MKRN2 (ENSAMEG00000004720) #20	MKRN2OS (ENSAMEG00000004745) #22	TSEN2 (ENSAMEG00000004748) #23	PPARG (ENSAMEG00000004774) #24	TIMP4 (ENSAMEG00000004836) #26	SYN2 (ENSAMEG00000004794) #25	TAMM41 (ENSAMEG00000010999) #27	VGLL4 (ENSAMEG00000011011) #28	ATG7 (ENSAMEG00000013130) #29	HRH1 (ENSAMEG00000019211)	SLC6A1 (ENSAMEG00000028234) #30	SLC6A11 (ENSAMEG00000013958) #31	ATP2B2 (ENSAMEG00000015866) #32	SEC13 (ENSAMEG00000015994) #33	GHRL (ENSAMEG00000016009) #34	TATDN2 (ENSAMEG00000016012) #35	IRAK2 (ENSAMEG00000016020) #36
Ursus	ANCESTRAL SPECIES	43	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00390000001016.b	ENSGT00390000012138.a.a.j.s.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.c.a #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Polar bear	MODERN SPECIES	210	MRPS25 (ENSUMAG00000017301)	RBSN (ENSUMAG00000017308)	TRH (ENSUMAG00000017316)	TMCC1 (ENSUMAG00000017322)	PLXND1 (ENSUMAG00000017372)	RHO (ENSUMAG00000017511)	IFT122 (ENSUMAG00000017522)	MBD4 (ENSUMAG00000017542)	ENSUMAG00000017544	EFCAB12 (ENSUMAG00000017549)	RPL32 (ENSUMAG00000017557) ##16	CAND2 (ENSUMAG00000017566) #17	TMEM40 (ENSUMAG00000017596) #18	RAF1 (ENSUMAG00000017600) #19	MKRN2 (ENSUMAG00000017606) #20	MKRN2OS (ENSUMAG00000017608) #22	TSEN2 (ENSUMAG00000017610) #23	PPARG (ENSUMAG00000017617) #24	SYN2 (ENSUMAG00000017656) #25	TIMP4 (ENSUMAG00000017853) #26	TAMM41 (ENSUMAG00000017859) #27	VGLL4 (ENSUMAG00000017868) #28	ATG7 (ENSUMAG00000017892) #29	HRH1 (ENSUMAG00000017957)	SLC6A1 (ENSUMAG00000017999) #30	SLC6A11 (ENSUMAG00000018214) #31	ATP2B2 (ENSUMAG00000018280) #32	SEC13 (ENSUMAG00000018614) #33	GHRL (ENSUMAG00000018619) #34	TATDN2 (ENSUMAG00000018632) #35	IRAK2 (ENSUMAG00000018643) #36
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
American mink	MODERN SPECIES	287	RBSN (ENSNVIG00000009795)	TRH (ENSNVIG00000009787)	TMCC1 (ENSNVIG00000009775)	PLXND1 (ENSNVIG00000009720)	H1-8 (ENSNVIG00000009706)	RHO (ENSNVIG00000009693)	IFT122 (ENSNVIG00000009217)	MBD4 (ENSNVIG00000009126)	EFCAB12 (ENSNVIG00000009088)	ENSNVIG00000009040 ##16	CAND2 (ENSNVIG00000008985) #17	TMEM40 (ENSNVIG00000008852) #18	ENSNVIG00000008812	RAF1 (ENSNVIG00000008700) #19	MKRN2 (ENSNVIG00000008629) #20	MKRN2OS (ENSNVIG00000008607) #22	TSEN2 (ENSNVIG00000008550) #23	PPARG (ENSNVIG00000008444) #24	TIMP4 (ENSNVIG00000008416) #26	ENSNVIG00000008402	SYN2 (ENSNVIG00000008362) #25
Ferret	MODERN SPECIES	163	RBSN (ENSMPUG00000017247)	TRH (ENSMPUG00000017246)	TMCC1 (ENSMPUG00000017243)	ENSMPUG00000017241	PLXND1 (ENSMPUG00000017238)	ENSMPUG00000017237	RHO (ENSMPUG00000017225)	IFT122 (ENSMPUG00000017197)	MBD4 (ENSMPUG00000017195)	EFCAB12 (ENSMPUG00000017190)	ENSMPUG00000017189 ##16	CAND2 (ENSMPUG00000017188) #17	TMEM40 (ENSMPUG00000017187) #18	RAF1 (ENSMPUG00000017185) #19	MKRN2 (ENSMPUG00000017184) #20	MKRN2OS (ENSMPUG00000017183) #22	TSEN2 (ENSMPUG00000017182) #23	PPARG (ENSMPUG00000017181) #24	TIMP4 (ENSMPUG00000017178) #26	SYN2 (ENSMPUG00000017176) #25	TAMM41 (ENSMPUG00000017175) #27	VGLL4 (ENSMPUG00000017174) #28	ATG7 (ENSMPUG00000017171) #29	HRH1 (ENSMPUG00000020115)	SLC6A1 (ENSMPUG00000017170) #30	SLC6A11 (ENSMPUG00000017168) #31	ENSMPUG00000017167	ATP2B2 (ENSMPUG00000017163) #32	SEC13 (ENSMPUG00000017161) #33	TATDN2 (ENSMPUG00000017160) #35	IRAK2 (ENSMPUG00000017157) #36
Felidae	ANCESTRAL SPECIES	17	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Panthera	ANCESTRAL SPECIES	1	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Panthera_a	ANCESTRAL SPECIES		ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
lion	MODERN SPECIES	2	MRPS25 (ENSPLOG00000002725)	RBSN (ENSPLOG00000002563)	TRH (ENSPLOG00000002548)	TMCC1 (ENSPLOG00000002518)	PLXND1 (ENSPLOG00000002460)	H1-8 (ENSPLOG00000002423)	RHO (ENSPLOG00000002405)	IFT122 (ENSPLOG00000002159)	MBD4 (ENSPLOG00000002021)	EFCAB12 (ENSPLOG00000001903)	RPL32 (ENSPLOG00000001870) #16	CAND2 (ENSPLOG00000001847) #17	TMEM40 (ENSPLOG00000001779) #18	RAF1 (ENSPLOG00000001743) #19	MKRN2 (ENSPLOG00000001691) #20	MKRN2OS (ENSPLOG00000001659) #22	TSEN2 (ENSPLOG00000001594) #23	PPARG (ENSPLOG00000001496) #24	TIMP4 (ENSPLOG00000001454) #26	SYN2 (ENSPLOG00000001422) #25	TAMM41 (ENSPLOG00000001396) #27	VGLL4 (ENSPLOG00000001346) #28	ENSPLOG00000001305	ATG7 (ENSPLOG00000001203) #29	HRH1 (ENSPLOG00000001150)	SLC6A1 (ENSPLOG00000001048) #30	SLC6A11 (ENSPLOG00000000895) #31	ATP2B2 (ENSPLOG00000000482) #32	SEC13 (ENSPLOG00000000172) #33	GHRL (ENSPLOG00000000147) #34	TATDN2 (ENSPLOG00000000120) #35
leopard	MODERN SPECIES	154	RBSN (ENSPPRG00000013941)	TRH (ENSPPRG00000013952)	TMCC1 (ENSPPRG00000014113)	PLXND1 (ENSPPRG00000014283)	H1-8 (ENSPPRG00000014444)	RHO (ENSPPRG00000014471)	ENSPPRG00000014504	IFT122 (ENSPPRG00000015865)	MBD4 (ENSPPRG00000016480)	EFCAB12 (ENSPPRG00000016816)	RPL32 (ENSPPRG00000016964) ##16	CAND2 (ENSPPRG00000017246) #17	TMEM40 (ENSPPRG00000018566) #18	RAF1 (ENSPPRG00000021390) #19	MKRN2 (ENSPPRG00000021887) #20	MKRN2OS (ENSPPRG00000021987) #22
Tiger	MODERN SPECIES	57				ENSPTIG00000016501	ENSPTIG00000016640	H1-8 (ENSPTIG00000016687)	RHO (ENSPTIG00000016846)	IFT122 (ENSPTIG00000017825)	ENSPTIG00000012068	EFCAB12 (ENSPTIG00000012496)	RPL32 (ENSPTIG00000013290) #16	CAND2 (ENSPTIG00000014551) #17	TMEM40 (ENSPTIG00000016867) #18	RAF1 (ENSPTIG00000019431) #19	MKRN2 (ENSPTIG00000020261) #20	MKRN2OS (ENSPTIG00000020689) #22	TSEN2 (ENSPTIG00000021018) #23	PPARG (ENSPTIG00000021339) #24	SYN2 (ENSPTIG00000005386) #25	TIMP4 (ENSPTIG00000009274) #26	TAMM41 (ENSPTIG00000009439) #27	VGLL4 (ENSPTIG00000011766) #28	ATG7 (ENSPTIG00000012782) #29	HRH1 (ENSPTIG00000005327)	SLC6A1 (ENSPTIG00000015454) #30	SLC6A11 (ENSPTIG00000016056) #31	ATP2B2 (ENSPTIG00000016845) #32	SEC13 (ENSPTIG00000019088) #33	GHRL (ENSPTIG00000020903) #34	TATDN2 (ENSPTIG00000021381) #35	IRAK2 (ENSPTIG00000002325) #36
Cat	MODERN SPECIES	1	TRH (ENSFCAG00000029423)	TMCC1 (ENSFCAG00000027586)	PLXND1 (ENSFCAG00000000095)	H1-8 (ENSFCAG00000000094)	RHO (ENSFCAG00000000092)	IFT122 (ENSFCAG00000000086)	MBD4 (ENSFCAG00000000083)	EFCAB12 (ENSFCAG00000000081)	RPL32 (ENSFCAG00000030450) #16	CAND2 (ENSFCAG00000008340) #17	ENSFCAG00000052196	TMEM40 (ENSFCAG00000037003) #18	RAF1 (ENSFCAG00000026299) #19	MKRN2 (ENSFCAG00000007979) #20	ENSFCAG00000049119	MKRN2OS (ENSFCAG00000046813) #22	TSEN2 (ENSFCAG00000025500) #23	PPARG (ENSFCAG00000006231) #24	TIMP4 (ENSFCAG00000028966) #26	SYN2 (ENSFCAG00000006229) #25	TAMM41 (ENSFCAG00000030835) #27	VGLL4 (ENSFCAG00000003266) #28	ATG7 (ENSFCAG00000003263) #29	HRH1 (ENSFCAG00000034897)	SLC6A1 (ENSFCAG00000004345) #30	SLC6A11 (ENSFCAG00000006043) #31	ATP2B2 (ENSFCAG00000011247) #32	SEC13 (ENSFCAG00000011245) #33	GHRL (ENSFCAG00000011244) #34	TATDN2 (ENSFCAG00000011241) #35	IRAK2 (ENSFCAG00000011239) #36
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Chiroptera	ANCESTRAL SPECIES	54	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35	ENSGT00940000159835 #36
Greater horseshoe bat	MODERN SPECIES	8	MRPS25 (ENSRFEG00010017280)	RBSN (ENSRFEG00010017337)	TRH (ENSRFEG00010017403)	ENSRFEG00010017442	TMCC1 (ENSRFEG00010017473)	PLXND1 (ENSRFEG00010017592)	RHO (ENSRFEG00010017659)	IFT122 (ENSRFEG00010017745)	MBD4 (ENSRFEG00010018007)	EFCAB12 (ENSRFEG00010018070)	RPL32 (ENSRFEG00010018162) #16	CAND2 (ENSRFEG00010018212) #17	TMEM40 (ENSRFEG00010018278) #18	RAF1 (ENSRFEG00010018423) #19	MKRN2 (ENSRFEG00010018469) #20	MKRN2OS (ENSRFEG00010018565) #22	TSEN2 (ENSRFEG00010018592) #23	PPARG (ENSRFEG00010018692) #24	SYN2 (ENSRFEG00010018840) #25	TIMP4 (ENSRFEG00010018875) #26	TAMM41 (ENSRFEG00010018912) #27	VGLL4 (ENSRFEG00010019005) #28	ATG7 (ENSRFEG00010019096) #29	HRH1 (ENSRFEG00010019159)	SLC6A1 (ENSRFEG00010019187) #30	SLC6A11 (ENSRFEG00010019331) #31	ATP2B2 (ENSRFEG00010019414) #32	ENSRFEG00010010425 #33	ENSRFEG00010010629 #34	TATDN2 (ENSRFEG00010010704) #35	IRAK2 (ENSRFEG00010010790) #36
Microbat	MODERN SPECIES	945	ENSMLUG00000017504	RBSN (ENSMLUG00000010088)	TRH (ENSMLUG00000007249)	TMCC1 (ENSMLUG00000016755)	PLXND1 (ENSMLUG00000014790)	ENSMLUG00000025226	RHO (ENSMLUG00000014786)	IFT122 (ENSMLUG00000014771)	MBD4 (ENSMLUG00000014766)	ENSMLUG00000014759	RPL32 (ENSMLUG00000022528) #16	CAND2 (ENSMLUG00000006333) #17	TMEM40 (ENSMLUG00000002835) #18	RAF1 (ENSMLUG00000017645) #19	MKRN2 (ENSMLUG00000017643) #20	MKRN2OS (ENSMLUG00000024734) #22	TSEN2 (ENSMLUG00000017641) #23	PPARG (ENSMLUG00000017638) #24	SYN2 (ENSMLUG00000006253) #25	TIMP4 (ENSMLUG00000006263) #26	TAMM41 (ENSMLUG00000015063) #27	VGLL4 (ENSMLUG00000010597) #28	ATG7 (ENSMLUG00000010572) #29	HRH1 (ENSMLUG00000010552)	SLC6A1 (ENSMLUG00000002027) #30	ENSMLUG00000009590 #31	ATP2B2 (ENSMLUG00000001467) #32	SEC13 (ENSMLUG00000004901) #33	GHRL (ENSMLUG00000012014) #34	TATDN2 (ENSMLUG00000004584) #35	IRAK2 (ENSMLUG00000004572) #36
Equus	ANCESTRAL SPECIES	5	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00940000153973.d ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00950000186178	ENSGT00940000156084.ab.a.b #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616.c.a #35
Donkey	MODERN SPECIES	13	ENSEASG00005015419	ENSEASG00005015384	ENSEASG00005015376	TMCC1 (ENSEASG00005015373)	PLXND1 (ENSEASG00005015351)	H1-8 (ENSEASG00005025925)	RHO (ENSEASG00005015347)	IFT122 (ENSEASG00005014840)	MBD4 (ENSEASG00005014800)	ENSEASG00005014792 ##16	CAND2 (ENSEASG00005014788) #17	ENSEASG00005025405	TMEM40 (ENSEASG00005033260) #18	ENSEASG00005014777 #19	MKRN2 (ENSEASG00005014776) #20	MKRN2OS (ENSEASG00005035083) #22	ENSEASG00005014772	TSEN2 (ENSEASG00005014763) #23	PPARG (ENSEASG00005014732) #24	TIMP4 (ENSEASG00005030754) #26	SYN2 (ENSEASG00005014311) #25	TAMM41 (ENSEASG00005014302) #27	VGLL4 (ENSEASG00005014301) #28	ENSEASG00005027051	ATG7 (ENSEASG00005014298) #29	HRH1 (ENSEASG00005025266)	SLC6A1 (ENSEASG00005014296) #30	SLC6A11 (ENSEASG00005014295) #31	ENSEASG00005034257	ATP2B2 (ENSEASG00005014293) #32	SEC13 (ENSEASG00005014291) #33
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b #16	ENSGT00940000153973.c.a.a ##16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35	ENSGT00940000159835 #36
Xenarthra	ANCESTRAL SPECIES	662													ENSGT00390000017740.a.b #17	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25
Armadillo	MODERN SPECIES	1334													CAND2 (ENSDNOG00000040049) #17	RAF1 (ENSDNOG00000009252) #19	ENSDNOG00000017476 #20	MKRN2OS (ENSDNOG00000042709) #22	TSEN2 (ENSDNOG00000038504) #23	PPARG (ENSDNOG00000018641) #24	TIMP4 (ENSDNOG00000012868) #26	SYN2 (ENSDNOG00000012852) #25
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874	ENSGT00940000153973 #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35
Opossum	MODERN SPECIES	5	ENSMODG00000042057	ENSMODG00000044035	TMCC1 (ENSMODG00000006987)	PLXND1 (ENSMODG00000006963)	ENSMODG00000028422	RHO (ENSMODG00000006488)	IFT122 (ENSMODG00000006462)	ENSMODG00000042737	ENSMODG00000006399	ENSMODG00000006335	RPL32 (ENSMODG00000037211) #16	CAND2 (ENSMODG00000006377) #17	ENSMODG00000025518 #18	RAF1 (ENSMODG00000006307) #19	MKRN2 (ENSMODG00000006280) #20	MKRN2OS (ENSMODG00000006265) #22	TSEN2 (ENSMODG00000006249) #23	PPARG (ENSMODG00000006233) #24	TIMP4 (ENSMODG00000006199) #26	SYN2 (ENSMODG00000006159) #25	ENSMODG00000006153 #27	VGLL4 (ENSMODG00000006145) #28	ATG7 (ENSMODG00000006136) #29	ENSMODG00000006043	HRH1 (ENSMODG00000006000)	SLC6A1 (ENSMODG00000005984) #30	SLC6A11 (ENSMODG00000005602) #31	ATP2B2 (ENSMODG00000005537) #32	SEC13 (ENSMODG00000005505) #33	ENSMODG00000039480 #34	TATDN2 (ENSMODG00000005496) #35
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874	ENSGT00940000153973 #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874	ENSGT00940000153973 #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189	ENSGT01020000230394.e.b.a	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00390000001016.b	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874	ENSGT00940000153973 #16	ENSGT00390000017740.a.b #17	ENSGT00390000017530 #18	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00940000153393.B #33	ENSGT00390000004064 #34	ENSGT00940000155616 #35
koala	MODERN SPECIES	10	ENSPCIG00000023530	RBSN (ENSPCIG00000023528)	ENSPCIG00000023527	TMCC1 (ENSPCIG00000002496)	PLXND1 (ENSPCIG00000002459)	RHO (ENSPCIG00000002359)	IFT122 (ENSPCIG00000002304)	ENSPCIG00000035263	ENSPCIG00000002276	ENSPCIG00000002263	RPL32 (ENSPCIG00000036095) #16	CAND2 (ENSPCIG00000002229) #17	TMEM40 (ENSPCIG00000002215) #18	RAF1 (ENSPCIG00000009694) #19	MKRN2 (ENSPCIG00000031653) #20	MKRN2OS (ENSPCIG00000002201) #22	TSEN2 (ENSPCIG00000002191) #23	PPARG (ENSPCIG00000002060) #24	TIMP4 (ENSPCIG00000002040) #26	SYN2 (ENSPCIG00000002007) #25	TAMM41 (ENSPCIG00000036857) #27	VGLL4 (ENSPCIG00000011097) #28	ATG7 (ENSPCIG00000011062) #29	ENSPCIG00000011056	HRH1 (ENSPCIG00000011053)	SLC6A1 (ENSPCIG00000011049) #30	SLC6A11 (ENSPCIG00000011028) #31	ATP2B2 (ENSPCIG00000024350) #32	ENSPCIG00000021918 #33	GHRL (ENSPCIG00000021917) #34	ENSPCIG00000021916 #35
Common wonbat	MODERN SPECIES	1012	ENSVURG00010014858	NR2C2 (ENSVURG00010014575)	MRPS25 (ENSVURG00010014548)	RBSN (ENSVURG00010014533)	TMCC1 (ENSVURG00010014518)	PLXND1 (ENSVURG00010014456)	RHO (ENSVURG00010014434)	IFT122 (ENSVURG00010014263)	ENSVURG00010014225	ENSVURG00010014212	ENSVURG00010014192 #16	CAND2 (ENSVURG00010013279) #17	TMEM40 (ENSVURG00010013215) #18	RAF1 (ENSVURG00010013196) #19	MKRN2 (ENSVURG00010013169) #20	MKRN2OS (ENSVURG00010013158) #22	TSEN2 (ENSVURG00010013138) #23	PPARG (ENSVURG00010013093) #24	ENSVURG00010013080 #25	TIMP4 (ENSVURG00010013076) #26	ENSVURG00010013071 #25	TAMM41 (ENSVURG00010013046) #27	VGLL4 (ENSVURG00010013026) #28	ATG7 (ENSVURG00010012989) #29	HRH1 (ENSVURG00010012968)	SLC6A1 (ENSVURG00010011767) #30	ENSVURG00010011722	SLC6A11 (ENSVURG00010011698) #31	ENSVURG00010011601 #32	GHRL (ENSVURG00010011569) #34	TATDN2 (ENSVURG00010011558) #35
Tasmanian devil	MODERN SPECIES		NR2C2 (ENSSHAG00000016078)	ENSSHAG00000015988	ENSSHAG00000026312	TMCC1 (ENSSHAG00000014733)	PLXND1 (ENSSHAG00000013651)	ENSSHAG00000029482	RHO (ENSSHAG00000013534)	IFT122 (ENSSHAG00000013078)	MBD4 (ENSSHAG00000012953)	ENSSHAG00000012822	ENSSHAG00000012782 #16	CAND2 (ENSSHAG00000012567) #17	TMEM40 (ENSSHAG00000012194) #18	RAF1 (ENSSHAG00000011099) #19	ENSSHAG00000011021 #20	MKRN2OS (ENSSHAG00000010787) #22	TSEN2 (ENSSHAG00000010530) #23	PPARG (ENSSHAG00000008610) #24	TIMP4 (ENSSHAG00000006738) #26	SYN2 (ENSSHAG00000006422) #25	TAMM41 (ENSSHAG00000018802) #27	ENSSHAG00000018702 #28	ENSSHAG00000027506	ENSSHAG00000031478	ATG7 (ENSSHAG00000022602) #29	HRH1 (ENSSHAG00000028397)	ENSSHAG00000018140 #30	SLC6A11 (ENSSHAG00000026964) #31	ENSSHAG00000017272 #32	SEC13 (ENSSHAG00000016558) #33	GHRL (ENSSHAG00000021643) #34
Platypus	MODERN SPECIES	83	MKNK2 (ENSOANG00000048798)	MOB3A (ENSOANG00000040976)	ENSOANG00000050388	DOT1L (ENSOANG00000010015)	ENSOANG00000036300	OAZ1 (ENSOANG00000000654)	ENSOANG00000030064	LINGO3 (ENSOANG00000003705)	SEMA3G (ENSOANG00000013236)	SYN2 (ENSOANG00000020050) #25	PPARG (ENSOANG00000046286) #24	ISY1 (ENSOANG00000013141)	ENSOANG00000045625	RAF1 (ENSOANG00000005684) #19	MKRN2 (ENSOANG00000038817) #20	MKRN2OS (ENSOANG00000039177) #22	ENSOANG00000011648 #23	CIAO2B (ENSOANG00000045690)	RRAD (ENSOANG00000013935)	ENSOANG00000042386	PDP2 (ENSOANG00000015274)	CA7 (ENSOANG00000012209)	ENSOANG00000031931	ENSOANG00000029079	ENSOANG00000030783	ENSOANG00000032301	ENSOANG00000030932	NAE1 (ENSOANG00000001061)
Sauria	ANCESTRAL SPECIES	13	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00980000199506	ENSGT00940000157238
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00980000199506	ENSGT00940000157238
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00980000199506	ENSGT00940000157238
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062.k #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.d #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062.k #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.d #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062.k #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.d #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986
Eastern brown snake	MODERN SPECIES	3	WNT7A (ENSPTXG00000006810)	FBLN2 (ENSPTXG00000006820)	NUP210 (ENSPTXG00000006850)	IQSEC1 (ENSPTXG00000006860) #15	ACAD9 (ENSPTXG00000007049)	CFAP92 (ENSPTXG00000007050)	EFCC1 (ENSPTXG00000007051)	GP9 (ENSPTXG00000007052)	ENSPTXG00000007053	RAB43 (ENSPTXG00000007054)	ENSPTXG00000007055	ISY1 (ENSPTXG00000007061)	ENSPTXG00000007062	RAF1 (ENSPTXG00000007063) #19	MKRN2 (ENSPTXG00000007064) #20	MKRN2OS (ENSPTXG00000007065) #22	TSEN2 (ENSPTXG00000007066) #23	PPARG (ENSPTXG00000007067) #24	SYN2 (ENSPTXG00000007068) #25	ENSPTXG00000007073 #26	TAMM41 (ENSPTXG00000007075) #27	VGLL4 (ENSPTXG00000007085) #28	ATG7 (ENSPTXG00000007086) #29	HRH1 (ENSPTXG00000007087)	SLC6A1 (ENSPTXG00000007090) #30	SLC6A11 (ENSPTXG00000007128) #31	ATP2B2 (ENSPTXG00000007129) #32	IARS1 (ENSPTXG00000009498)	NOL8 (ENSPTXG00000009500)	OGN (ENSPTXG00000009501)	OMD (ENSPTXG00000009502)
Blue-lipped sea krait	MODERN SPECIES	9065																MKRN2OS (ENSLLTG00000012249) #22	TSEN2 (ENSLLTG00000012264) #23
Indian cobra	MODERN SPECIES	1	ENSNNAG00000017810	NUP210 (ENSNNAG00000017830)	IQSEC1 (ENSNNAG00000017851) #15	ACAD9 (ENSNNAG00000017867)	CFAP92 (ENSNNAG00000017912)	EFCC1 (ENSNNAG00000017915)	ENSNNAG00000017916	ENSNNAG00000017919	RAB43 (ENSNNAG00000017921)	ENSNNAG00000017924	ISY1 (ENSNNAG00000017943)	ENSNNAG00000017946	ENSNNAG00000017950	RAF1 (ENSNNAG00000017955) #19	MKRN2 (ENSNNAG00000017961) #20	MKRN2OS (ENSNNAG00000017966) #22	TSEN2 (ENSNNAG00000017971) #23	PPARG (ENSNNAG00000017984) #24	SYN2 (ENSNNAG00000017991) #25	ENSNNAG00000018001 #26	TAMM41 (ENSNNAG00000018006) #27	VGLL4 (ENSNNAG00000018012) #28	ATG7 (ENSNNAG00000018034) #29	HRH1 (ENSNNAG00000018100)	SLC6A1 (ENSNNAG00000018109) #30	SLC6A11 (ENSNNAG00000018147) #31	ATP2B2 (ENSNNAG00000018213) #32	ENSNNAG00000018337	IARS1 (ENSNNAG00000018371)	ENSNNAG00000000435	OGN (ENSNNAG00000000453)
Lizard	MODERN SPECIES	1	ENSACAG00000043115	ENSACAG00000043082	ENSACAG00000045372	ENSACAG00000012926 #15	ACAD9 (ENSACAG00000012998)	ENSACAG00000013119	ENSACAG00000013121	GP9 (ENSACAG00000022777)	ENSACAG00000013124	ENSACAG00000013126	ENSACAG00000013142	ISY1 (ENSACAG00000013166)	ENSACAG00000038503	MKRN2 (ENSACAG00000013310) #20	RAF1 (ENSACAG00000013194) #19	MKRN2OS (ENSACAG00000029532) #22	TSEN2 (ENSACAG00000013345) #23	PPARG (ENSACAG00000013360) #24	TIMP4 (ENSACAG00000013457) #26	ENSACAG00000028862	SYN2 (ENSACAG00000013404) #25	TAMM41 (ENSACAG00000010318) #27	VGLL4 (ENSACAG00000010299) #28	ATG7 (ENSACAG00000010224) #29	HRH1 (ENSACAG00000010219)	ENSACAG00000043799	ENSACAG00000036621	ENSACAG00000035306	SLC6A1 (ENSACAG00000010020) #30	ENSACAG00000041468	SLC6A11 (ENSACAG00000009875) #31
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860.fb	ENSGT00390000004860.gb	ENSGT00940000157238
Common wall lizard	MODERN SPECIES	10	NUP210 (ENSPMRG00000012830)	IQSEC1 (ENSPMRG00000012774) #15	ACAD9 (ENSPMRG00000012761)	CFAP92 (ENSPMRG00000012752)	EFCC1 (ENSPMRG00000012744)	ENSPMRG00000012740	ENSPMRG00000012736	GP9 (ENSPMRG00000012730)	ENSPMRG00000012727	RAB43 (ENSPMRG00000012725)	ENSPMRG00000012718	ISY1 (ENSPMRG00000012711)	ENSPMRG00000012709	RAF1 (ENSPMRG00000012698) #19	MKRN2 (ENSPMRG00000012692) #20	MKRN2OS (ENSPMRG00000012689) #22	TSEN2 (ENSPMRG00000012682) #23	PPARG (ENSPMRG00000012674) #24	ENSPMRG00000012669	TIMP4 (ENSPMRG00000012664) #26	SYN2 (ENSPMRG00000012608) #25	TAMM41 (ENSPMRG00000012590) #27	VGLL4 (ENSPMRG00000012585) #28	ATG7 (ENSPMRG00000012572) #29	HRH1 (ENSPMRG00000012568)	ENSPMRG00000012565	SLC6A1 (ENSPMRG00000012556) #30	SLC6A11 (ENSPMRG00000012549) #31	ATP2B2 (ENSPMRG00000012496) #32	ENSPMRG00000012475	ENSPMRG00000012467
Argentine black and white tegu	MODERN SPECIES	8	ENSSMRG00000019598	FBLN2 (ENSSMRG00000019596)	NUP210 (ENSSMRG00000019594)	IQSEC1 (ENSSMRG00000019592) #15	ACAD9 (ENSSMRG00000019591)	ENSSMRG00000019590	ENSSMRG00000019589	GP9 (ENSSMRG00000019588)	ENSSMRG00000019587	RAB43 (ENSSMRG00000019586)	ENSSMRG00000019585	ISY1 (ENSSMRG00000019584)	ENSSMRG00000019583	RAF1 (ENSSMRG00000019582) #19	MKRN2 (ENSSMRG00000019581) #20	MKRN2OS (ENSSMRG00000019580) #22	TSEN2 (ENSSMRG00000019579) #23	PPARG (ENSSMRG00000019578) #24	TIMP4 (ENSSMRG00000019576) #26	SYN2 (ENSSMRG00000019575) #25	TAMM41 (ENSSMRG00000019573) #27	VGLL4 (ENSSMRG00000019572) #28	ATG7 (ENSSMRG00000019571) #29	HRH1 (ENSSMRG00000019569)	SLC6A1 (ENSSMRG00000019568) #30	SLC6A11 (ENSSMRG00000019567) #31	ENSSMRG00000014887 #32	IARS1 (ENSSMRG00000014856)	RPL29 (ENSSMRG00000014854)	ENSSMRG00000014853	OGN (ENSSMRG00000014850)
tuatara	MODERN SPECIES	1318									PREX1 (ENSSPUG00000017929)	RAB43 (ENSSPUG00000017960)	ENSSPUG00000017987	ISY1 (ENSSPUG00000018050)	ENSSPUG00000018059	RAF1 (ENSSPUG00000018074) #19	MKRN2 (ENSSPUG00000018086) #20	MKRN2OS (ENSSPUG00000018090) #22	TSEN2 (ENSSPUG00000018099) #23	PPARG (ENSSPUG00000018117) #24	SYN2 (ENSSPUG00000018134) #25	TIMP4 (ENSSPUG00000018140) #26	TAMM41 (ENSSPUG00000018148) #27
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Cryptodira	ANCESTRAL SPECIES	41	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.b #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.b #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860.nb	ENSGT00390000011897	ENSGT00940000157238
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.b #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860.nb	ENSGT00390000011897	ENSGT00940000157238
painted turtle	MODERN SPECIES	14								ENSCPBG00000026342	RAB43 (ENSCPBG00000026343)	ENSCPBG00000026344	ISY1 (ENSCPBG00000026346)	ENSCPBG00000026348	ENSCPBG00000026349	RAF1 (ENSCPBG00000026352) #19	MKRN2 (ENSCPBG00000026356) #20	MKRN2OS (ENSCPBG00000026357) #22	TSEN2 (ENSCPBG00000026359) #23	PPARG (ENSCPBG00000026361) #24	SYN2 (ENSCPBG00000026365) #25	TIMP4 (ENSCPBG00000026368) #26	TAMM41 (ENSCPBG00000000254) #27	ATG7 (ENSCPBG00000000334) #29	HRH1 (ENSCPBG00000000415)	SLC6A1 (ENSCPBG00000000431) #30	ENSCPBG00000000450	SLC6A11 (ENSCPBG00000000487) #31	ENSCPBG00000000579 #32	IARS1 (ENSCPBG00000001174)	NOL8 (ENSCPBG00000006773)	CENPP (ENSCPBG00000006781)	OGN (ENSCPBG00000006790)
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00940000167251	ENSGT00390000014109.c.b	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569.b #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00390000004860.nb.c	ENSGT00390000011897	ENSGT00940000157238
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005005963	HDAC11 (ENSGEVG00005005930)	NUP210 (ENSGEVG00005005766)	IQSEC1 (ENSGEVG00005005708) #15	ACAD9 (ENSGEVG00005005630)	ENSGEVG00005005602	ENSGEVG00005005535	GP9 (ENSGEVG00005005510)	RAB43 (ENSGEVG00005005485)	ENSGEVG00005005430	ENSGEVG00005005367	ENSGEVG00005005307	ENSGEVG00005018078	RAF1 (ENSGEVG00005018027) #19	MKRN2 (ENSGEVG00005018003) #20	MKRN2OS (ENSGEVG00005017994) #22	TSEN2 (ENSGEVG00005017977) #23	PPARG (ENSGEVG00005017941) #24	TIMP4 (ENSGEVG00005017900) #26	SYN2 (ENSGEVG00005017832) #25	TAMM41 (ENSGEVG00005017797) #27	VGLL4 (ENSGEVG00005017769) #28	ATG7 (ENSGEVG00005017701) #29	HRH1 (ENSGEVG00005017663)	SLC6A1 (ENSGEVG00005017316) #30	SLC6A11 (ENSGEVG00005017116) #31	ATP2B2 (ENSGEVG00005015471) #32	IARS1 (ENSGEVG00005015240)	ENSGEVG00005015198	ENSGEVG00005015160	CENPP (ENSGEVG00005015104)
Chinese turtle	MODERN SPECIES	660												ISY1 (ENSPSIG00000009384)	ENSPSIG00000009556	RAF1 (ENSPSIG00000009677) #19	MKRN2 (ENSPSIG00000010483) #20	MKRN2OS (ENSPSIG00000010665) #22	ENSPSIG00000010669 #23	PPARG (ENSPSIG00000011100) #24	SYN2 (ENSPSIG00000011238) #25	TIMP4 (ENSPSIG00000011745) #26	TAMM41 (ENSPSIG00000012037) #27	VGLL4 (ENSPSIG00000012119) #28	ATG7 (ENSPSIG00000012300) #29	HRH1 (ENSPSIG00000000512)	USP4 (ENSPSIG00000014081)	ENSPSIG00000015319	ENSPSIG00000015328	ENSPSIG00000015446
Archosauria	ANCESTRAL SPECIES	24	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Aves	ANCESTRAL SPECIES	29	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Neognathae	ANCESTRAL SPECIES	27	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00940000157238
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Chicken	MODERN SPECIES	3	WNT7A (ENSGALG00010027653)	FBLN2 (ENSGALG00010027649)	HDAC11 (ENSGALG00010027988)	NUP210 (ENSGALG00010027980)	IQSEC1 (ENSGALG00010027975) #15	ACAD9 (ENSGALG00010027965)	CFAP92 (ENSGALG00010027954)	ENSGALG00010027958	GP9 (ENSGALG00010027947)	RAB43 (ENSGALG00010027943)	ENSGALG00010027938	ISY1 (ENSGALG00010027935)	CNBP (ENSGALG00010027934)	RAF1 (ENSGALG00010027930) #19	MKRN2 (ENSGALG00010027925) #20	MKRN2OS (ENSGALG00010027921) #22	TSEN2 (ENSGALG00010027919) #23	PPARG (ENSGALG00010027917) #24	TIMP4 (ENSGALG00010027909) #26	SYN2 (ENSGALG00010027905) #25	TAMM41 (ENSGALG00010027263) #27	VGLL4 (ENSGALG00010027253) #28	ATG7 (ENSGALG00010027247) #29	HRH1 (ENSGALG00010027243)	SLC6A1 (ENSGALG00010027240) #30	SLC6A11 (ENSGALG00010027234) #31	ATP2B2 (ENSGALG00010027231) #32	IARS1 (ENSGALG00010027218)	ENSGALG00010028201	NOL8 (ENSGALG00010027207)	CENPP (ENSGALG00010027195)
Japanese quail	MODERN SPECIES	3	PTPDC1 (ENSCJPG00005012891)	WNT7A (ENSCJPG00005012887)	FBLN2 (ENSCJPG00005012884)	HDAC11 (ENSCJPG00005012883)	NUP210 (ENSCJPG00005012882)	IQSEC1 (ENSCJPG00005012881) #15	ACAD9 (ENSCJPG00005012880)	ENSCJPG00005012879	ENSCJPG00005012878	GP9 (ENSCJPG00005012877)	RAB43 (ENSCJPG00005012876)	ENSCJPG00005012875	ISY1 (ENSCJPG00005012874)	ENSCJPG00005012873	RAF1 (ENSCJPG00005012872) #19	MKRN2OS (ENSCJPG00005012871) #22	MKRN2 (ENSCJPG00005012870) #20	TSEN2 (ENSCJPG00005012869) #23	PPARG (ENSCJPG00005012868) #24	TIMP4 (ENSCJPG00005012867) #26	SYN2 (ENSCJPG00005012866) #25	TAMM41 (ENSCJPG00005012865) #27	VGLL4 (ENSCJPG00005012862) #28	ATG7 (ENSCJPG00005012861) #29	HRH1 (ENSCJPG00005012860)	SLC6A1 (ENSCJPG00005012319) #30	SLC6A11 (ENSCJPG00005012307) #31	ENSCJPG00005012303 #32	IARS1 (ENSCJPG00005012250)	ENSCJPG00005012248	OGN (ENSCJPG00005012247)
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Kakapo	MODERN SPECIES	3	FBLN2 (ENSSHBG00005007366)	ENSSHBG00005007405	HDAC11 (ENSSHBG00005007414)	NUP210 (ENSSHBG00005007487)	IQSEC1 (ENSSHBG00005007655) #15	ACAD9 (ENSSHBG00005007759)	CFAP92 (ENSSHBG00005007781)	ENSSHBG00005007802	GP9 (ENSSHBG00005007812)	RAB43 (ENSSHBG00005007820)	ENSSHBG00005007853	ISY1 (ENSSHBG00005007896)	ENSSHBG00005007914	RAF1 (ENSSHBG00005007932) #19	MKRN2 (ENSSHBG00005007960) #20	MKRN2OS (ENSSHBG00005007967) #22	TSEN2 (ENSSHBG00005007982) #23	PPARG (ENSSHBG00005008004) #24	SYN2 (ENSSHBG00005008017) #25	TIMP4 (ENSSHBG00005008034) #26	TAMM41 (ENSSHBG00005008045) #27	VGLL4 (ENSSHBG00005008062) #28	ATG7 (ENSSHBG00005008229) #29	HRH1 (ENSSHBG00005009603)	SLC6A1 (ENSSHBG00005009619) #30	SLC6A11 (ENSSHBG00005009639) #31	ATP2B2 (ENSSHBG00005009663) #32	IARS1 (ENSSHBG00005009904)	ENSSHBG00005010633	ENSSHBG00005010656	ENSSHBG00005010716
Golden eagle	MODERN SPECIES	12	WNT7A (ENSACCG00020011302)	FBLN2 (ENSACCG00020009352)	HDAC11 (ENSACCG00020009388)	NUP210 (ENSACCG00020009416)	IQSEC1 (ENSACCG00020009446) #15	ACAD9 (ENSACCG00020009474)	CFAP92 (ENSACCG00020009502)	ENSACCG00020009517	GP9 (ENSACCG00020009526)	RAB43 (ENSACCG00020009539)	ENSACCG00020009638	ISY1 (ENSACCG00020009699)	ENSACCG00020009718	RAF1 (ENSACCG00020009762) #19	MKRN2 (ENSACCG00020009843) #20	MKRN2OS (ENSACCG00020009863) #22	TSEN2 (ENSACCG00020009874) #23	PPARG (ENSACCG00020009885) #24	SYN2 (ENSACCG00020009920) #25	TIMP4 (ENSACCG00020009945) #26	TAMM41 (ENSACCG00020009963) #27	VGLL4 (ENSACCG00020009982) #28	ATG7 (ENSACCG00020010015) #29	HRH1 (ENSACCG00020010042)	SLC6A1 (ENSACCG00020010053) #30	SLC6A11 (ENSACCG00020010066) #31	ATP2B2 (ENSACCG00020010108) #32	IARS1 (ENSACCG00020010143)	ENSACCG00020010173	ENSACCG00020010204	ENSACCG00020010223
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00390000004113	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109.d	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00950000182865.b.b.b.c.a	ENSGT00390000004860	ENSGT00390000011897
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980.f	ENSGT00940000164112.a	ENSGT00390000014109.d.b.a	ENSGT00950000183041.A	ENSGT00390000014300.p	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00950000182865.b.b.b.c.a	ENSGT00390000004860	ENSGT00390000011897
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980.f	ENSGT00940000164112.a	ENSGT00390000014109.d.b.a	ENSGT00950000183041.A	ENSGT00390000014300.p	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00950000182865.b.b.b.c.a	ENSGT00390000004860	ENSGT00390000011897
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00940000161980.f	ENSGT00940000164112.a	ENSGT00390000014109.d.b.a	ENSGT00950000183041.A	ENSGT00390000014300.p	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000161461 #32	ENSGT00550000074921	ENSGT00950000182865.b.b.b.c.a	ENSGT00390000004860	ENSGT00390000011897
Zebra finch	MODERN SPECIES	3	WNT7A (ENSTGUG00000003752)	ENSTGUG00000022371	FBLN2 (ENSTGUG00000003758)	ENSTGUG00000003803	ENSTGUG00000003823	IQSEC1 (ENSTGUG00000003876) #15	ACAD9 (ENSTGUG00000003909)	ENSTGUG00000023307	GP9 (ENSTGUG00000003978)	RAB43 (ENSTGUG00000021700)	ENSTGUG00000003984	ENSTGUG00000003998	ENSTGUG00000004001	RAF1 (ENSTGUG00000004006) #19	MKRN2 (ENSTGUG00000004017) #20	MKRN2OS (ENSTGUG00000028016) #22	TSEN2 (ENSTGUG00000004044) #23	ENSTGUG00000025620	PPARG (ENSTGUG00000004069) #24	TIMP4 (ENSTGUG00000019602) #26	ENSTGUG00000025121	SYN2 (ENSTGUG00000004093) #25	TAMM41 (ENSTGUG00000004121) #27	VGLL4 (ENSTGUG00000004136) #28	ATG7 (ENSTGUG00000004145) #29	HRH1 (ENSTGUG00000004180)	SLC6A1 (ENSTGUG00000004182) #30	SLC6A11 (ENSTGUG00000004225) #31	ATP2B2 (ENSTGUG00000004296) #32	IARS1 (ENSTGUG00000004410)	ENSTGUG00000019357
Common canary	MODERN SPECIES	15	HDAC11 (ENSSCAG00000010687)	NUP210 (ENSSCAG00000010702)	IQSEC1 (ENSSCAG00000010741) #15	ACAD9 (ENSSCAG00000010788)	ENSSCAG00000010943	ENSSCAG00000010945	ENSSCAG00000010950	GP9 (ENSSCAG00000010953)	RAB43 (ENSSCAG00000010955)	ENSSCAG00000010990	ISY1 (ENSSCAG00000011046)	ENSSCAG00000011053	ENSSCAG00000011058	RAF1 (ENSSCAG00000011068) #19	MKRN2 (ENSSCAG00000011091) #20	MKRN2OS (ENSSCAG00000011095) #22	TSEN2 (ENSSCAG00000011099) #23	PPARG (ENSSCAG00000011103) #24	SYN2 (ENSSCAG00000011108) #25	TIMP4 (ENSSCAG00000011112) #26	TAMM41 (ENSSCAG00000011113) #27	VGLL4 (ENSSCAG00000011116) #28	ATG7 (ENSSCAG00000011122) #29	HRH1 (ENSSCAG00000011131)	SLC6A1 (ENSSCAG00000011359) #30	SLC6A11 (ENSSCAG00000012356) #31	ATP2B2 (ENSSCAG00000012674) #32	IARS1 (ENSSCAG00000012686)	ENSSCAG00000012697	CENPP (ENSSCAG00000012700)	OGN (ENSSCAG00000012703)
Great tit	MODERN SPECIES	3	ASPN (ENSPMJG00000005091)	OMD (ENSPMJG00000005090)	OGN (ENSPMJG00000005089)	CENPP (ENSPMJG00000005088)	ENSPMJG00000005087	ENSPMJG00000005086	ENSPMJG00000005084	GP9 (ENSPMJG00000005082)	RAB43 (ENSPMJG00000005081)	ENSPMJG00000005079	ISY1 (ENSPMJG00000005074)	ENSPMJG00000005069	ENSPMJG00000005065	RAF1 (ENSPMJG00000005061) #19	ENSPMJG00000005058 #20	MKRN2OS (ENSPMJG00000005056) #22	TSEN2 (ENSPMJG00000005055) #23	PPARG (ENSPMJG00000005054) #24	ENSPMJG00000005053 #25	TIMP4 (ENSPMJG00000005043) #26	ENSPMJG00000005042 #25	TAMM41 (ENSPMJG00000005039) #27	VGLL4 (ENSPMJG00000005038) #28	ATG7 (ENSPMJG00000005007) #29	HRH1 (ENSPMJG00000005006)	SLC6A1 (ENSPMJG00000004995) #30	SLC6A11 (ENSPMJG00000004374) #31	ATP2B2 (ENSPMJG00000004350) #32	IARS1 (ENSPMJG00000004334)	PTPDC1 (ENSPMJG00000004327)	BARX1 (ENSPMJG00000004323)
African ostrich	MODERN SPECIES	1066	PTPDC1 (ENSSCUG00000015185)	ENSSCUG00000015181	WNT7A (ENSSCUG00000015175)	FBLN2 (ENSSCUG00000015170)	HDAC11 (ENSSCUG00000015163)	NUP210 (ENSSCUG00000015147)	ACAD9 (ENSSCUG00000015133)	CFAP92 (ENSSCUG00000015116)	GP9 (ENSSCUG00000015105)	RAB43 (ENSSCUG00000015101)	ENSSCUG00000015094	ISY1 (ENSSCUG00000015087)	ENSSCUG00000015086	RAF1 (ENSSCUG00000015081) #19	MKRN2 (ENSSCUG00000015071) #20	MKRN2OS (ENSSCUG00000015069) #22	TSEN2 (ENSSCUG00000015062) #23	PPARG (ENSSCUG00000015050) #24	SYN2 (ENSSCUG00000015041) #25	TIMP4 (ENSSCUG00000015038) #26	TAMM41 (ENSSCUG00000015017) #27	VGLL4 (ENSSCUG00000015010) #28	ATG7 (ENSSCUG00000015003) #29	HRH1 (ENSSCUG00000014994)	SLC6A1 (ENSSCUG00000014975) #30	SLC6A11 (ENSSCUG00000014961) #31	ATP2B2 (ENSSCUG00000014930) #32	IARS1 (ENSSCUG00000014894)	NOL8 (ENSSCUG00000014881)	OGN (ENSSCUG00000014870)	OMD (ENSSCUG00000014863)
Australian saltwater crocodile	MODERN SPECIES	37	FBLN2 (ENSCPRG00005019153)	HDAC11 (ENSCPRG00005019154)	NUP210 (ENSCPRG00005019156)	IQSEC1 (ENSCPRG00005019158) #15	ACAD9 (ENSCPRG00005019159)	CFAP92 (ENSCPRG00005019160)	ENSCPRG00005019161	GP9 (ENSCPRG00005019162)	ENSCPRG00005019163	RAB43 (ENSCPRG00005019165)	ENSCPRG00005019166	ISY1 (ENSCPRG00005019167)	ENSCPRG00005019169	RAF1 (ENSCPRG00005019170) #19	MKRN2 (ENSCPRG00005019171) #20	MKRN2OS (ENSCPRG00005019172) #22	TSEN2 (ENSCPRG00005019173) #23	PPARG (ENSCPRG00005019174) #24	SYN2 (ENSCPRG00005019176) #25	TIMP4 (ENSCPRG00005019177) #26	TAMM41 (ENSCPRG00005019178) #27	VGLL4 (ENSCPRG00005019180) #28	ATG7 (ENSCPRG00005019181) #29	HRH1 (ENSCPRG00005019183)	SLC6A1 (ENSCPRG00005019184) #30	SLC6A11 (ENSCPRG00005019185) #31	ENSCPRG00005019186 #32	IARS1 (ENSCPRG00005019188)	OGN (ENSCPRG00005019192)	OMD (ENSCPRG00005019193)	ASPN (ENSCPRG00005019194)
Anura	ANCESTRAL SPECIES	338													ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839 #22	ENSGT00390000013266 #23	ENSGT00390000014109
Leishan spiny toad	MODERN SPECIES	11	ACAD9 (ENSLLEG00000025523)	ENSLLEG00000026113	ENSLLEG00000026375	GP9 (ENSLLEG00000026438)	ENSLLEG00000026482	ENSLLEG00000026565	ENSLLEG00000026610	FRMD4B (ENSLLEG00000026638)	ENSLLEG00000026927	LMOD3 (ENSLLEG00000026945)	ARL6IP5 (ENSLLEG00000026982)	ENSLLEG00000027044	RAF1 (ENSLLEG00000027363) #19	ENSLLEG00000027659	MKRN2 (ENSLLEG00000027692) #20	MKRN2OS (ENSLLEG00000027800) #22	ENSLLEG00000027826 #23	ISY1 (ENSLLEG00000027932)	ENSLLEG00000028000	RAB43 (ENSLLEG00000028054)	ENSLLEG00000028107	MITF (ENSLLEG00000028151)	ENSLLEG00000028405	CDC73 (ENSLLEG00000028448)	GLRX2 (ENSLLEG00000028565)	IVNS1ABP (ENSLLEG00000028612)	ENSLLEG00000028673	ENSLLEG00000028682	ENSLLEG00000028726	SLC25A6 (ENSLLEG00000028913)	MDFIC2 (ENSLLEG00000028932)
Frog	MODERN SPECIES	4	ENSXETG00000024197 #31	ENSXETG00000041612	XB5944457 [provisional] (ENSXETG00000012105) #30	ENSXETG00000049123	ENSXETG00000045682	ENSXETG00000045653	uqcrc1 (ENSXETG00000021470)	nisch (ENSXETG00000021467)	ENSXETG00000045029	ENSXETG00000043200	ENSXETG00000042389	ENSXETG00000038805	pparg (ENSXETG00000017422) #24	raf1 (ENSXETG00000020163) #19	mkrn2 (ENSXETG00000043301) #20	mkrn2os (ENSXETG00000041950) #22	ENSXETG00000042890	itih3 (ENSXETG00000006887)	ENSXETG00000046560	nek4 (ENSXETG00000006888)	gnl3 (ENSXETG00000013669)	spcs1 (ENSXETG00000013668)	glt8d1 (ENSXETG00000042897)	ENSXETG00000049370	ENSXETG00000043218	pbrm1 (ENSXETG00000013671)	NT5DC2 (ENSXETG00000047019)	STAB1 (ENSXETG00000044486)
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES	14	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238
Neopterygii	ANCESTRAL SPECIES	38	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000158523.c.b	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00990000205530	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183041.A.a.b	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a
Osteoglossiformes	ANCESTRAL SPECIES	57	ENSGT00940000158523.d	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.b	ENSGT00940000156084 #19	ENSGT00950000183077.a.b.p #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798.b #26	ENSGT00940000156062.m #25	ENSGT00940000159798.a.b #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500.k	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084
P. kingsleyae	MODERN SPECIES	60	TULP1 (ENSPKIG00000024476)	ENSPKIG00000024482	ENSPKIG00000024490	ENSPKIG00000024498	ENSPKIG00000024509	ENSPKIG00000024519	ENSPKIG00000024532	nuf2 (ENSPKIG00000024545)	rab43 (ENSPKIG00000024563)	ENSPKIG00000024576	isy1 (ENSPKIG00000024592)	cnbpb (ENSPKIG00000024603)	raf1b (ENSPKIG00000024636) #19	MKRN2 (ENSPKIG00000024724) #20	ENSPKIG00000024788 #22	MKRN2OS (ENSPKIG00000024791) #22	tsen2 (ENSPKIG00000024801) #23	PPARG (ENSPKIG00000024820) #24	SYN2 (ENSPKIG00000024841) #25	TIMP4 (ENSPKIG00000024854) #26	tamm41 (ENSPKIG00000024860) #27	vgll4b (ENSPKIG00000024872) #28	ATG7 (ENSPKIG00000024886) #29	HRH1 (ENSPKIG00000024898)	slc6a1b (ENSPKIG00000024901) #30	SLC6A11 (ENSPKIG00000024908) #31	atp2b2 (ENSPKIG00000024938)	ENSPKIG00000024988	iars1 (ENSPKIG00000025011)	tnnc1a (ENSPKIG00000025038)	rpl29 (ENSPKIG00000025048)
Clupeocephala	ANCESTRAL SPECIES	20	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a
Otomorpha	ANCESTRAL SPECIES	29								ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a
Clupeiformes	ANCESTRAL SPECIES	214												ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a
Atlantic herring	MODERN SPECIES	21	ENSCHAG00000009548	ENSCHAG00000009554	parp3 (ENSCHAG00000009559)	GRM2 (ENSCHAG00000009645)	tex264a (ENSCHAG00000009710)	fancd2 (ENSCHAG00000009730)	ENSCHAG00000010316	ENSCHAG00000010466	emc3 (ENSCHAG00000014853)	tmem45b (ENSCHAG00000014956)	gng8 (ENSCHAG00000014964)	ENSCHAG00000014985	raf1b (ENSCHAG00000015158) #19	mkrn2 (ENSCHAG00000015498) #20	ENSCHAG00000015536 #22	MKRN2OS (ENSCHAG00000015545) #22	tsen2 (ENSCHAG00000015557) #23	PPARG (ENSCHAG00000015643) #24	syn2b (ENSCHAG00000015897)	timp4.2 (ENSCHAG00000017406) #26	tamm41 (ENSCHAG00000017413) #27	vgll4b (ENSCHAG00000017431) #28	ATG7 (ENSCHAG00000017457) #29	HRH1 (ENSCHAG00000017743)	slc6a1b (ENSCHAG00000017782) #30	SLC6A11 (ENSCHAG00000018702) #31	atp2b2 (ENSCHAG00000019399)	iars1 (ENSCHAG00000019757)	tnnc1a (ENSCHAG00000019978)	rpl29 (ENSCHAG00000020005)	dusp7 (ENSCHAG00000020030)
Denticle herring	MODERN SPECIES	3	slc48a1b (ENSDCDG00000026820)	ITGA5 (ENSDCDG00000021357)	bin2b (ENSDCDG00000021235)	stk35l (ENSDCDG00000021227)	GRM2 (ENSDCDG00000021222)	tex264a (ENSDCDG00000021219)	fancd2 (ENSDCDG00000020972)	ENSDCDG00000020954	gpx1a (ENSDCDG00000020953)	ENSDCDG00000016718	emc3 (ENSDCDG00000016651)	ENSDCDG00000016645	raf1b (ENSDCDG00000016216) #19	mkrn2 (ENSDCDG00000016143) #20	ENSDCDG00000016138 #22	MKRN2OS (ENSDCDG00000016136) #22	tsen2 (ENSDCDG00000016127) #23	PPARG (ENSDCDG00000016087) #24	timp4.2 (ENSDCDG00000016082) #26	tamm41 (ENSDCDG00000016077) #27	syn2b (ENSDCDG00000035419)	tamm41 (ENSDCDG00000035411) #27	vgll4b (ENSDCDG00000035408) #28	ATG7 (ENSDCDG00000035327) #29	HRH1 (ENSDCDG00000035297)	slc6a1b (ENSDCDG00000035164) #30	SLC6A11 (ENSDCDG00000035032) #31	atp2b2 (ENSDCDG00000034974)	iars1 (ENSDCDG00000034943)	ENSDCDG00000034913	rpl29 (ENSDCDG00000034906)
Otophysi	ANCESTRAL SPECIES	247								ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000156062.m #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166043	ENSGT00390000002944
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00940000157238.a	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000156062.m #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166043	ENSGT00390000002944
Characoidei	ANCESTRAL SPECIES	38	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000015124	ENSGT00390000016940.c.a.b	ENSGT00940000158593.a	ENSGT00950000183188.A.a.a	ENSGT00940000159517	ENSGT00390000002944	ENSGT00940000166043	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #31	ENSGT00940000156027.b #30
Mexicana tetra	MODERN SPECIES	14	grm2b (ENSAMXG00000006790)	ENSAMXG00000034242	ippk (ENSAMXG00000033401)	ENSAMXG00000041795	si:dkey-42i9.4 (ENSAMXG00000005289)	atrip (ENSAMXG00000005302)	shisa10.1 (ENSAMXG00000039145)	nuf2 (ENSAMXG00000005348)	rab43 (ENSAMXG00000032172)	zgc:77375 (ENSAMXG00000029468)	isy1 (ENSAMXG00000005423)	ENSAMXG00000005433	raf1b (ENSAMXG00000005440) #19	mkrn2 (ENSAMXG00000005535) #20	ENSAMXG00000038911 #22	MKRN2OS (ENSAMXG00000005712) #22	tsen2 (ENSAMXG00000043484) #23	PPARG (ENSAMXG00000043041) #24	syn2b (ENSAMXG00000032883)	timp4.3 (ENSAMXG00000042051) #26	timeless (ENSAMXG00000005979)	ENSAMXG00000036008	MMP19 (ENSAMXG00000006031)	pmela (ENSAMXG00000006095)	cdk2 (ENSAMXG00000030741)	sarnp (ENSAMXG00000004834)	gdf11 (ENSAMXG00000039058)	iars1 (ENSAMXG00000036265)	ENSAMXG00000041363	atp2b2 (ENSAMXG00000000039)	SLC6A11 (ENSAMXG00000032111) #31
Red-bellied piranha	MODERN SPECIES	103	aspn (ENSPNAG00000008046)	ECM2 (ENSPNAG00000008055)	cenpp (ENSPNAG00000000629)	ippk (ENSPNAG00000008073)	si:dkey-42i9.4 (ENSPNAG00000008076)	atrip (ENSPNAG00000008094)	shisa10.1 (ENSPNAG00000000671)	nuf2 (ENSPNAG00000000683)	rab43 (ENSPNAG00000000692)	zgc:77375 (ENSPNAG00000008127)	isy1 (ENSPNAG00000000703)	ENSPNAG00000008143	raf1b (ENSPNAG00000008167) #19	mkrn2 (ENSPNAG00000008184) #20	ENSPNAG00000000758 #22	MKRN2OS (ENSPNAG00000008194) #22	tsen2 (ENSPNAG00000008203) #23	PPARG (ENSPNAG00000008214) #24	timp4.3 (ENSPNAG00000008221) #26	syn2b (ENSPNAG00000000793)	timeless (ENSPNAG00000008298)	ENSPNAG00000000887	MMP19 (ENSPNAG00000000896)	pmela (ENSPNAG00000008382)	cdk2 (ENSPNAG00000008407)	sarnp (ENSPNAG00000000975)	gdf11 (ENSPNAG00000008415)	iars1 (ENSPNAG00000008441)	atp2b2 (ENSPNAG00000008513)	SLC6A11 (ENSPNAG00000008559) #31	slc6a1b (ENSPNAG00000001100) #30
Channel catfish	MODERN SPECIES	13	OMD (ENSIPUG00000011045)	aspn (ENSIPUG00000011058)	ecm2 (ENSIPUG00000011082)	ippk (ENSIPUG00000011110)	si:dkey-42i9.4 (ENSIPUG00000011123)	atrip (ENSIPUG00000011138)	shisa5 (ENSIPUG00000011229)	nuf2 (ENSIPUG00000011256)	RAB43 (ENSIPUG00000011323)	zgc:77375 (ENSIPUG00000011342)	Isy1 (ENSIPUG00000011379)	ENSIPUG00000011418	raf1 (ENSIPUG00000011435) #19	mkrn2 (ENSIPUG00000011589) #20	ENSIPUG00000011635 #22	MKRN2OS (ENSIPUG00000011647) #22	tsen2 (ENSIPUG00000011651) #23	PPARG (ENSIPUG00000011668) #24	syn2 (ENSIPUG00000011716)	timp4 (ENSIPUG00000011732) #26	tamm41 (ENSIPUG00000011765) #27	vgll4 (ENSIPUG00000011872) #28	atg7 (ENSIPUG00000011898) #29	hrh1 (ENSIPUG00000011966)	slc6a1 (ENSIPUG00000011974) #30	slc6a11 (ENSIPUG00000012021) #31	atp2b2 (ENSIPUG00000012098)	iars (ENSIPUG00000012333)	gdf11 (ENSIPUG00000012483)	Sarnp (ENSIPUG00000012503)	cdk2 (ENSIPUG00000012551)
Cyprinoidei	ANCESTRAL SPECIES	131										ENSGT00390000004199	ENSGT00940000161980.i.a	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798.h #26	ENSGT00940000159798.g #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569.l #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084
Cyprininae	ANCESTRAL SPECIES	787										ENSGT00940000157804.l	ENSGT00390000010265.b	ENSGT00390000004199	ENSGT00950000183041.A.a.b.e.b	ENSGT00940000156084.s.a #19	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00940000158273.a #24	ENSGT00940000167517.c
Cyprininae_a	ANCESTRAL SPECIES	535								ENSGT00940000157804.l	ENSGT00390000010265.b	ENSGT00390000010265.a	ENSGT00940000155224.c.a	ENSGT00390000004199	ENSGT00950000183041.A.a.b.e.b	ENSGT00940000156084.s.a #19	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00940000158273.a #24	ENSGT00940000167517.c	ENSGT00940000159798.h.a.a #26	ENSGT00940000159798.g.a.a #26
Common carp reference	MODERN SPECIES	13									ENSCCRG00000041693	ENSCCRG00000058306	ENSCCRG00000018254	ENSCCRG00000059611	ENSCCRG00000048194	ENSCCRG00000021288	ENSCCRG00000030779 #22	MKRN2OS (ENSCCRG00000080573) #22	ENSCCRG00000028460 #24	TIMP4 (ENSCCRG00000067355) #26	ENSCCRG00000054276	ENSCCRG00000075001	TIMP4 (ENSCCRG00000058279) #26	ENSCCRG00000080358	ENSCCRG00000065400	vgll4b (ENSCCRG00000081211) #28	ATG7 (ENSCCRG00000069201) #29	slc6a1b (ENSCCRG00000066274) #30	SLC6A11 (ENSCCRG00000064612) #31	atp2b2 (ENSCCRG00000009632)	iars1 (ENSCCRG00000029865)	rpl29 (ENSCCRG00000007746)	dusp7 (ENSCCRG00000054563)
Goldfish	MODERN SPECIES	52							sp1 (ENSCARG00000048237)	ENSCARG00000048251	myg1 (ENSCARG00000048256)	ENSCARG00000048338	col2a1b (ENSCARG00000048371)	ENSCARG00000048583	nuf2 (ENSCARG00000048607)	cnbpb (ENSCARG00000048701)	ENSCARG00000049212 #22	MKRN2OS (ENSCARG00000049228) #22	ENSCARG00000049249 #24	ENSCARG00000049341	syn2b (ENSCARG00000049357)	ENSCARG00000049673	vgll4b (ENSCARG00000049678) #28	HRH1 (ENSCARG00000049702)	slc6a1b (ENSCARG00000049707) #30	SLC6A11 (ENSCARG00000049911) #31	atp2b2 (ENSCARG00000054003)	LRP1 (ENSCARG00000060823)	ENSCARG00000061928	ENSCARG00000061950	ENSCARG00000061968	mybl2b (ENSCARG00000061994)	ift52 (ENSCARG00000062189)
Zebrafish	MODERN SPECIES	2	mettl1 (ENSDARG00000076518)	POC1A (ENSDARG00000078533)	cyp27b1 (ENSDARG00000045015)	pdrg1 (ENSDARG00000045017)	ENSDARG00000109591	znf831 (ENSDARG00000074906)	nuf2 (ENSDARG00000034624)	rab43 (ENSDARG00000059404)	zgc:77375 (ENSDARG00000004282)	isy1 (ENSDARG00000063466)	cnbpb (ENSDARG00000070922)	raf1b (ENSDARG00000059406) #19	ENSDARG00000105417	mkrn2 (ENSDARG00000007630) #20	ENSDARG00000086655 #22	MKRN2OS (ENSDARG00000100728) #22	tsen2 (ENSDARG00000091851) #23	pparg (ENSDARG00000031848)	syn2b (ENSDARG00000101054)	TIMP4 (ENSDARG00000111805) #26	timp4.2 (ENSDARG00000102617) #26	timp4.3 (ENSDARG00000100795) #26	vgll4b (ENSDARG00000103730) #28	tamm41 (ENSDARG00000100157) #27	ATG7 (ENSDARG00000102893) #29	slc6a1b (ENSDARG00000039647) #30	SLC6A11 (ENSDARG00000087981) #31	atp2b2 (ENSDARG00000063433)	iars1 (ENSDARG00000007955)	rpl29 (ENSDARG00000077717)	ENSDARG00000091799
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494
Acanthomorphata	ANCESTRAL SPECIES	299										ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000178764
Euacanthomorphacea	ANCESTRAL SPECIES	95	ENSGT01100000264229	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482
Percomorphaceae	ANCESTRAL SPECIES	33	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000171658	ENSGT00940000178492	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Tiger tail seahorse	MODERN SPECIES	295	uqcc1 (ENSHCOG00000014217)	sdc4 (ENSHCOG00000014227)	ENSHCOG00000014246	manf (ENSHCOG00000014258)	rbm15b (ENSHCOG00000014262)	dag1 (ENSHCOG00000014265)	ENSHCOG00000014312	AMIGO3 (ENSHCOG00000014318)	RNF123 (ENSHCOG00000014368)	aldh4a1 (ENSHCOG00000014399)	ENSHCOG00000014417	PIK3C2B (ENSHCOG00000000710)	FAM107A (ENSHCOG00000014565)	mkrn2 (ENSHCOG00000014604) #20	ENSHCOG00000014610	ENSHCOG00000014625 #22	ENSHCOG00000014632 #23	rbm39a (ENSHCOG00000014668)	si:ch211-15p9.2 (ENSHCOG00000014721)	ENSHCOG00000014737	isy1 (ENSHCOG00000014775)	HDHD5 (ENSHCOG00000014795)	pcif1 (ENSHCOG00000014823)	polr2j (ENSHCOG00000014827)	DNTTIP1 (ENSHCOG00000014830)	ube2c (ENSHCOG00000014848)	zgc:109913 (ENSHCOG00000014860)	ENSHCOG00000014879	snrpb (ENSHCOG00000014888)	ctsa (ENSHCOG00000014934)	khk (ENSHCOG00000014960)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Eupercaria	ANCESTRAL SPECIES		ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Tetraodontidae	ANCESTRAL SPECIES	179														ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206
Fugu	DUPLICATION
Fugu	MODERN SPECIES	10	ddx27 (ENSTRUG00000002089)	KCNQ2 (ENSTRUG00000000611)	ctsa (ENSTRUG00000000654)	ENSTRUG00000031402	ENSTRUG00000001553	snrpb (ENSTRUG00000023094)	zgc:109913 (ENSTRUG00000001475)	ENSTRUG00000026594	polr2j (ENSTRUG00000032405)	DNTTIP1 (ENSTRUG00000000728)	ENSTRUG00000026947	ENSTRUG00000021720	ENSTRUG00000033298	ENSTRUG00000027760	ENSTRUG00000032566	MKRN2OS (ENSTRUG00000031839) #22	ENSTRUG00000004124 #23	ENSTRUG00000031743	rbm39a (ENSTRUG00000021378)	ENSTRUG00000031224 #23	MKRN2OS (ENSTRUG00000029635) #22	mkrn2 (ENSTRUG00000003156) #20	ENSTRUG00000020229	ENSTRUG00000026378	ENSTRUG00000003638	ENSTRUG00000026113	ENSTRUG00000028895	ENSTRUG00000028985	ENSTRUG00000030913	ENSTRUG00000033445	matn4 (ENSTRUG00000000492)
Fugu	MODERN SPECIES	10	cox6c (ENSTRUG00000001090)	ENSTRUG00000000941	KCNS1 (ENSTRUG00000032761)	ENSTRUG00000033248	RBPJL (ENSTRUG00000030033)	matn4 (ENSTRUG00000000492)	ENSTRUG00000033445	ENSTRUG00000030913	ENSTRUG00000028985	ENSTRUG00000028895	ENSTRUG00000026113	ENSTRUG00000003638	ENSTRUG00000026378	ENSTRUG00000020229	mkrn2 (ENSTRUG00000003156) #20	MKRN2OS (ENSTRUG00000029635) #22	ENSTRUG00000031224 #23	rbm39a (ENSTRUG00000021378)	ENSTRUG00000031743	ENSTRUG00000004124 #23	MKRN2OS (ENSTRUG00000031839) #22	ENSTRUG00000032566	ENSTRUG00000027760	ENSTRUG00000033298	ENSTRUG00000021720	ENSTRUG00000026947	DNTTIP1 (ENSTRUG00000000728)	polr2j (ENSTRUG00000032405)	ENSTRUG00000026594	zgc:109913 (ENSTRUG00000001475)	snrpb (ENSTRUG00000023094)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	3211																ENSLBEG00000015087 #22	ENSLBEG00000015067
Ballan wrasse	MODERN SPECIES	3281																ENSLBEG00000018156 #22	ENSLBEG00000018174
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Perciformes	ANCESTRAL SPECIES		ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Cottioidei	ANCESTRAL SPECIES		ENSGT00390000014941	ENSGT01050000244824.F	ENSGT00730000111323	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Stickleback	MODERN SPECIES	17	dnase1l4.1 (ENSGACG00000003559)	ENSGACG00000003555	ENSGACG00000003551	YWHAB (ENSGACG00000003522)	RIMS4 (ENSGACG00000003513)	GRIP2 (ENSGACG00000003495)	slc6a6b (ENSGACG00000003490)	LSM3 (ENSGACG00000003488)	ENSGACG00000003484	aldh4a1 (ENSGACG00000003426)	hoxb13a (ENSGACG00000003421)	ENSGACG00000003419	ENSGACG00000003417	ENSGACG00000003413	mkrn2 (ENSGACG00000003396) #20	MKRN2OS (ENSGACG00000003394) #22	tsen2 (ENSGACG00000003387) #23	rbm39a (ENSGACG00000003376)	si:ch211-15p9.2 (ENSGACG00000003371)	isy1 (ENSGACG00000003342)	ENSGACG00000003330	pcif1 (ENSGACG00000003325)	DNTTIP1 (ENSGACG00000003311)	polr2j (ENSGACG00000003310)	ube2c (ENSGACG00000003290)	zgc:109913 (ENSGACG00000003284)	ENSGACG00000003282	snrpb (ENSGACG00000003262)	ctsa (ENSGACG00000003218)	ENSGACG00000003210	KCNQ2 (ENSGACG00000003203)
Lumpfish	MODERN SPECIES	20	blcap (ENSCLMG00005018891)	ENSCLMG00005018889	ENSCLMG00005018887	CHD6 (ENSCLMG00005009283)	rspo4 (ENSCLMG00005009209)	ENSCLMG00005009208	PTPRT (ENSCLMG00005008937)	aldh4a1 (ENSCLMG00005007771)	ENSCLMG00005007760	ASCL5 (ENSCLMG00005007759)	ENSCLMG00005007758	PIK3C2B (ENSCLMG00005003083)	ENSCLMG00005004010	mkrn2 (ENSCLMG00005004009) #20	ENSCLMG00005004008	ENSCLMG00005004007 #22	tsen2 (ENSCLMG00005004006) #23	ENSCLMG00005003893	si:ch211-15p9.2 (ENSCLMG00005003892)	ENSCLMG00005003891	isy1 (ENSCLMG00005003889)	ENSCLMG00005003886	pcif1 (ENSCLMG00005003882)	DNTTIP1 (ENSCLMG00005003877)	polr2j (ENSCLMG00005003876)	ube2c (ENSCLMG00005003843)	zgc:109913 (ENSCLMG00005003839)	ENSCLMG00005003838	ENSCLMG00005003835	ENSCLMG00005003834	snrpb (ENSCLMG00005003830)
Perciformes_a	ANCESTRAL SPECIES	89								ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000154468.tb.a	ENSGT00390000014109
Pike perch	MODERN SPECIES	301					AMIGO3 (ENSSLUG00000018731)	RNF123 (ENSSLUG00000018767)	aldh4a1 (ENSSLUG00000019076)	ENSSLUG00000019903	ENSSLUG00000019907	ENSSLUG00000019910	ASCL5 (ENSSLUG00000019913)	ENSSLUG00000019917	PIK3C2B (ENSSLUG00000019973)	ENSSLUG00000020890	mkrn2 (ENSSLUG00000020895) #20	MKRN2OS (ENSSLUG00000020903) #22	rbm39a (ENSSLUG00000020924)	isy1 (ENSSLUG00000021098)
Eupecaria_C	ANCESTRAL SPECIES	41	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	47	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00940000169528	ENSGT00950000183077.a.b #20	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i
European seabass	MODERN SPECIES	42													ENSDLAG00005003526 #20	ENSDLAG00005027455	ENSDLAG00005034482	ENSDLAG00005028761 #22	ENSDLAG00005026968 #23	ENSDLAG00005026833	ENSDLAG00005030993	ENSDLAG00005028434	ENSDLAG00005027529	ENSDLAG00005026960	ENSDLAG00005016873	pcif1 (ENSDLAG00005015241)	ENSDLAG00005029053	ube2c (ENSDLAG00005019745)	zgc:109913 (ENSDLAG00005026801)	ENSDLAG00005029211	ENSDLAG00005028501	ENSDLAG00005016673	ENSDLAG00005016683
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00880000138014.b
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052
Anabantoidei	ANCESTRAL SPECIES	92															ENSGT00390000003839.b #22	ENSGT00390000003839.a #22
Climbing perch	MODERN SPECIES	18	ENSATEG00000008680	ENSATEG00000025280	ENSATEG00000008720	ENSATEG00000008739	ENSATEG00000008775	ENSATEG00000026741	ENSATEG00000008817	ENSATEG00000009115	ENSATEG00000009148	ENSATEG00000009200	ENSATEG00000009210	ENSATEG00000009229	ENSATEG00000009337	mkrn2 (ENSATEG00000009352) #20	ENSATEG00000029135 #22	ENSATEG00000028083 #22	ENSATEG00000026035	ENSATEG00000009443	ENSATEG00000009461	ENSATEG00000009504	ENSATEG00000009521	ENSATEG00000009541	ENSATEG00000009619	ENSATEG00000028604	ENSATEG00000028967	ENSATEG00000027254	ube2c (ENSATEG00000009751)	ENSATEG00000009791	ENSATEG00000009807	ENSATEG00000009836	ENSATEG00000009881
Carangaria	ANCESTRAL SPECIES	34								ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00560000077335	ENSGT00940000178492	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00880000138014.b
Carangaria_A	ANCESTRAL SPECIES	81										ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00880000138014.b
Seriola	ANCESTRAL SPECIES	69	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.b.b.c.b.b.a.a.b	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163190.h.a.b.`b	ENSGT00940000163190.h.a.b.ab	ENSGT00940000163190.g.a	ENSGT00970000193381.a.b.b.c.b.b.a.a.a	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00880000138014.b
Greater amberjack	MODERN SPECIES	25	aldh4a1 (ENSSDUG00000017947)	ENSSDUG00000017981	ENSSDUG00000017993	ENSSDUG00000018007	ENSSDUG00000018009	ENSSDUG00000018013	ENSSDUG00000018027	ENSSDUG00000018032	ENSSDUG00000018040	ASCL5 (ENSSDUG00000018046)	ENSSDUG00000018049	PIK3C2B (ENSSDUG00000018064)	FAM107A (ENSSDUG00000018125)	mkrn2 (ENSSDUG00000018142) #20	ENSSDUG00000018155 #22	MKRN2OS (ENSSDUG00000018163) #22	tsen2 (ENSSDUG00000018175) #23	rbm39a (ENSSDUG00000018191)	si:ch211-15p9.2 (ENSSDUG00000018226)	ENSSDUG00000018275	isy1 (ENSSDUG00000018291)	ENSSDUG00000018317	pcif1 (ENSSDUG00000018400)	DNTTIP1 (ENSSDUG00000018467)	polr2j (ENSSDUG00000018490)	ube2c (ENSSDUG00000018505)	zgc:109913 (ENSSDUG00000018521)	ENSSDUG00000018530	snrpb (ENSSDUG00000018539)	ENSSDUG00000018549	ctsa (ENSSDUG00000018570)
Yellowtail amberjack	MODERN SPECIES	2784	ENSSLDG00000021892	RNF123 (ENSSLDG00000021901)	AMIGO3 (ENSSLDG00000021955)	aldh4a1 (ENSSLDG00000021961)	ENSSLDG00000021996	ENSSLDG00000022006	ENSSLDG00000022012	ENSSLDG00000022021	ASCL5 (ENSSLDG00000022029)	ENSSLDG00000022032	PIK3C2B (ENSSLDG00000022056)	ENSSLDG00000022106	FAM107A (ENSSLDG00000022117)	mkrn2 (ENSSLDG00000022136) #20	ENSSLDG00000022143 #22	ENSSLDG00000022152 #22	ENSSLDG00000022171 #23	rbm39a (ENSSLDG00000022188)	si:ch211-15p9.2 (ENSSLDG00000022216)	ENSSLDG00000022237	isy1 (ENSSLDG00000022252)	ENSSLDG00000022265	pcif1 (ENSSLDG00000022277)	ENSSLDG00000022332	polr2j (ENSSLDG00000022354)	ube2c (ENSSLDG00000022361)	zgc:109913 (ENSSLDG00000022371)	ENSSLDG00000022379	snrpb (ENSSLDG00000022391)	ENSSLDG00000022403	ctsa (ENSSLDG00000022421)
Pleuronectoidei	ANCESTRAL SPECIES	31	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Tongue sole	MODERN SPECIES	2	smpd4 (ENSCSEG00000020794)	cyc1 (ENSCSEG00000020779)	mcm2 (ENSCSEG00000020768)	ENSCSEG00000020757	slmapa (ENSCSEG00000020484)	tma7 (ENSCSEG00000020472)	psmf1 (ENSCSEG00000020469)	AMIGO3 (ENSCSEG00000020465)	RNF123 (ENSCSEG00000020456)	aldh4a1 (ENSCSEG00000020448)	CHST15 (ENSCSEG00000020445)	ENSCSEG00000020442	PIK3C2B (ENSCSEG00000020431)	ENSCSEG00000020423	mkrn2 (ENSCSEG00000020415) #20	MKRN2OS (ENSCSEG00000020411) #22	tsen2 (ENSCSEG00000020407) #23	rbm39a (ENSCSEG00000020394)	si:ch211-15p9.2 (ENSCSEG00000020393)	ENSCSEG00000020388	isy1 (ENSCSEG00000020382)	ENSCSEG00000020371	pcif1 (ENSCSEG00000020360)	DNTTIP1 (ENSCSEG00000020357)	polr2j (ENSCSEG00000020352)	ube2c (ENSCSEG00000020347)	ENSCSEG00000020342	ENSCSEG00000020339	ENSCSEG00000020335	snrpb (ENSCSEG00000020328)	ENSCSEG00000020326
Turbot	MODERN SPECIES	18	ENSSMAG00000034605	ENSSMAG00000027780	ENSSMAG00000025744	ENSSMAG00000022100	nicn1 (ENSSMAG00000005914)	ENSSMAG00000005933	ENSSMAG00000005990	ENSSMAG00000006132	ENSSMAG00000023613	ENSSMAG00000024919	ENSSMAG00000006159	ENSSMAG00000006185	ENSSMAG00000006226	ENSSMAG00000033433	ENSSMAG00000006350 #20	ENSSMAG00000006394 #22	ENSSMAG00000006406 #23	ENSSMAG00000006440	ENSSMAG00000006499	ENSSMAG00000006527	ENSSMAG00000023429	ENSSMAG00000006593	ENSSMAG00000006601	ENSSMAG00000006615	pcif1 (ENSSMAG00000006634)	ENSSMAG00000006679	ENSSMAG00000006729	ube2c (ENSSMAG00000006707)	zgc:109913 (ENSSMAG00000006745)	ENSSMAG00000023950	ENSSMAG00000006766
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138
Atherinomorphae	ANCESTRAL SPECIES	29	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000158222	ENSGT00940000169138
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000158222	ENSGT00940000169138
Cyprinodontoidei	ANCESTRAL SPECIES	46	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000158222	ENSGT00940000169138	ENSGT00940000155052
NAME_4	ANCESTRAL SPECIES	174						ENSGT01030000234648.a.a.c.a	ENSGT00940000155781.c	ENSGT00950000183146.b.b	ENSGT00940000155781.d	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i
Mummichog	MODERN SPECIES	503							RNF123 (ENSFHEG00000007212)	AMIGO3 (ENSFHEG00000007168)	RNF123 (ENSFHEG00000007126)	aldh4a1 (ENSFHEG00000006971)	ENSFHEG00000006950	ENSFHEG00000006939	PIK3C2B (ENSFHEG00000006934)	FAM107A (ENSFHEG00000006916)	mkrn2 (ENSFHEG00000006905) #20	ENSFHEG00000006865 #22	ENSFHEG00000006845 #23	rbm39a (ENSFHEG00000006810)	si:ch211-15p9.2 (ENSFHEG00000006787)	isy1 (ENSFHEG00000006776)	ENSFHEG00000006722	ENSFHEG00000006713	pcif1 (ENSFHEG00000006684)	DNTTIP1 (ENSFHEG00000006633)	polr2j (ENSFHEG00000006625)	ube2c (ENSFHEG00000006609)	zgc:109913 (ENSFHEG00000006579)	ENSFHEG00000006541	ENSFHEG00000006534	ctsa (ENSFHEG00000006517)	ENSFHEG00000006498
Sheepshead minnow	MODERN SPECIES	1562															mkrn2 (ENSCVAG00000014456) #20	ENSCVAG00000014450 #22	ENSCVAG00000014442	tsen2 (ENSCVAG00000014431) #23	rbm39a (ENSCVAG00000014408)	si:ch211-15p9.2 (ENSCVAG00000014360)	isy1 (ENSCVAG00000000650)	HDHD5 (ENSCVAG00000014343)	pcif1 (ENSCVAG00000014332)	DNTTIP1 (ENSCVAG00000014288)	polr2j (ENSCVAG00000014267)	ube2c (ENSCVAG00000014248)	zgc:109913 (ENSCVAG00000014207)	ENSCVAG00000014201	SNRPN (ENSCVAG00000014193)	ENSCVAG00000014186	ctsa (ENSCVAG00000014166)
Poeciliinae	ANCESTRAL SPECIES	31	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g.c	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.a.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i
Poecilia	ANCESTRAL SPECIES	25	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.a.b.b	ENSGT00940000159711.g.c	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i	ENSGT00940000160093.a
NAME_6	ANCESTRAL SPECIES	313														ENSGT00940000169528	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i
Sailfin molly	MODERN SPECIES	2157														ENSPLAG00000013755	mkrn2 (ENSPLAG00000013770) #20	MKRN2OS (ENSPLAG00000013778) #22	tsen2 (ENSPLAG00000013787) #23	rbm39a (ENSPLAG00000013925)	si:ch211-15p9.2 (ENSPLAG00000013942)	HDHD5 (ENSPLAG00000014001)	pcif1 (ENSPLAG00000014011)	gjb9a (ENSPLAG00000000325)	ENSPLAG00000014051	DNTTIP1 (ENSPLAG00000014059)	polr2j (ENSPLAG00000014075)	ube2c (ENSPLAG00000014090)	zgc:109913 (ENSPLAG00000014104)	ENSPLAG00000014116	snrpb (ENSPLAG00000014130)	ctsa (ENSPLAG00000014159)	ENSPLAG00000014168
Amazon molly	MODERN SPECIES	973															mkrn2 (ENSPFOG00000012571) #20	MKRN2OS (ENSPFOG00000012536) #22	tsen2 (ENSPFOG00000012459) #23	rbm39a (ENSPFOG00000012350)	si:ch211-15p9.2 (ENSPFOG00000012286)	pcif1 (ENSPFOG00000012161)	DNTTIP1 (ENSPFOG00000012022)	polr2j (ENSPFOG00000012001)	ube2c (ENSPFOG00000011928)	zgc:109913 (ENSPFOG00000011902)	ENSPFOG00000011876	snrpb (ENSPFOG00000011802)	ctsa (ENSPFOG00000011676)	ENSPFOG00000023022
Guppy	MODERN SPECIES	457	ENSPREG00000021456	ENSPREG00000021448	ENSPREG00000021445	GRM7 (ENSPREG00000021434)	ENSPREG00000021406	AMIGO3 (ENSPREG00000021377)	ENSPREG00000021366	ENSPREG00000021351	ENSPREG00000021340	aldh4a1 (ENSPREG00000021317)	ASCL5 (ENSPREG00000021303)	ENSPREG00000021293	PIK3C2B (ENSPREG00000021267)	FAM107A (ENSPREG00000021220)	mkrn2 (ENSPREG00000021199) #20	MKRN2OS (ENSPREG00000021189) #22	ENSPREG00000021166	rbm39a (ENSPREG00000021088)	smpd4 (ENSPREG00000020995)	romo1 (ENSPREG00000020948)	ergic3 (ENSPREG00000020899)	mych (ENSPREG00000020875)	ENSPREG00000020864	ENSPREG00000020850	ENSPREG00000020839	CHMP4B (ENSPREG00000020817)	ahcy (ENSPREG00000020799)
Platyfish	MODERN SPECIES	12	pcbp4 (ENSXMAG00000015709)	dag1 (ENSXMAG00000012250)	nicn1 (ENSXMAG00000024537)	GRM7 (ENSXMAG00000015698)	ENSXMAG00000028609	ENSXMAG00000026990	RNF123 (ENSXMAG00000012608)	AMIGO3 (ENSXMAG00000010901)	aldh4a1 (ENSXMAG00000012583)	ASCL5 (ENSXMAG00000024316)	ENSXMAG00000027726	PIK3C2B (ENSXMAG00000012532)	FAM107A (ENSXMAG00000012529)	ENSXMAG00000028757	mkrn2 (ENSXMAG00000012508) #20	MKRN2OS (ENSXMAG00000012504) #22	tsen2 (ENSXMAG00000012479) #23	rbm39a (ENSXMAG00000012463)	si:ch211-15p9.2 (ENSXMAG00000012458)	isy1 (ENSXMAG00000012452)	ENSXMAG00000012443	pcif1 (ENSXMAG00000012427)	DNTTIP1 (ENSXMAG00000023667)	polr2j (ENSXMAG00000012422)	ube2c (ENSXMAG00000012406)	zgc:109913 (ENSXMAG00000012402)	ENSXMAG00000021148	ENSXMAG00000012378	snrpb (ENSXMAG00000028767)	ctsa (ENSXMAG00000012347)	ENSXMAG00000024467
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000161664	ENSGT00950000183053.C.a	ENSGT00390000013253	ENSGT00940000154543.d	ENSGT00940000160913	ENSGT00940000164258	ENSGT00940000158934	ENSGT00940000166055	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00490000043388.b.a	ENSGT00940000155326.b	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000004199	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000158854	ENSGT01020000230394.e.a.a.b.a.a.b.a.a	ENSGT00940000165995	ENSGT00940000157446	ENSGT00390000018852	ENSGT00940000155048.d.a	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a.a	ENSGT00940000153456.b.b	ENSGT00390000004581
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000161664	ENSGT00950000183053.C.a	ENSGT00390000013253	ENSGT00940000154543.d	ENSGT00940000160913	ENSGT00940000164258	ENSGT00940000158934	ENSGT00940000166055	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00490000043388.b.a	ENSGT00940000155326.b	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000004199	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000158854	ENSGT01020000230394.e.a.a.b.a.a.b.a.a	ENSGT00940000165995	ENSGT00940000157446	ENSGT00390000018852	ENSGT00940000155048.d.a	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a.a	ENSGT00940000153456.b.b	ENSGT00390000004581
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000027924	pdrg1 (ENSORLG00000021999)	ENSORLG00000030548	aldh1l1 (ENSORLG00000009492)	ENSORLG00000009508	ENSORLG00000009518	ENSORLG00000009523	LSM3 (ENSORLG00000025900)	ENSORLG00000009579	GRIP2 (ENSORLG00000009623)	ENSORLG00000025197	zgc:171566 (ENSORLG00000009641)	PTPRT (ENSORLG00000009770)	ENSORLG00000023811	mkrn2 (ENSORLG00000009824) #20	MKRN2OS (ENSORLG00000025591) #22	ENSORLG00000026661 #23	rbm39a (ENSORLG00000009919)	si:ch211-15p9.2 (ENSORLG00000022741)	nuf2 (ENSORLG00000009929)	SERINC3 (ENSORLG00000009959)	ENSORLG00000009973	ENSORLG00000010071	si:dkey-19e4.5 (ENSORLG00000010093)	ENSORLG00000010116	MTMR14 (ENSORLG00000010139)	ptprga (ENSORLG00000010143)	ENSORLG00000023114	fezf2 (ENSORLG00000010156)	ENSORLG00000010190	ENSORLG00000027434
Chinese medaka	MODERN SPECIES	957	ENSOSIG00000007784	pdrg1 (ENSOSIG00000007788)	ENSOSIG00000007789	aldh1l1 (ENSOSIG00000007822)	ENSOSIG00000012555	RIMS4 (ENSOSIG00000012556)	ENSOSIG00000012557	LSM3 (ENSOSIG00000012559)	slc6a6b (ENSOSIG00000012583)	GRIP2 (ENSOSIG00000017297)	zgc:171566 (ENSOSIG00000017642)	PTPRT (ENSOSIG00000017976)	FAM107A (ENSOSIG00000022270)	ENSOSIG00000022271	mkrn2 (ENSOSIG00000022273) #20	MKRN2OS (ENSOSIG00000022275) #22	ENSOSIG00000022276 #23	rbm39a (ENSOSIG00000022280)	si:ch211-15p9.2 (ENSOSIG00000022285)	nuf2 (ENSOSIG00000022287)	SERINC3 (ENSOSIG00000022334)	ENSOSIG00000022563	si:dkey-19e4.5 (ENSOSIG00000022644)	ENSOSIG00000022648	MTMR14 (ENSOSIG00000022711)	ptprga (ENSOSIG00000022739)	fezf2 (ENSOSIG00000022742)	ENSOSIG00000023057	nampt2 (ENSOSIG00000023651)	LDLRAD2 (ENSOSIG00000023668)	ENSOSIG00000023669
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00940000161664	ENSGT00950000183053.C.a	ENSGT00390000013253	ENSGT00940000154543.d	ENSGT00940000160913	ENSGT00940000164258	ENSGT00940000158934	ENSGT00940000166055	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00490000043388.b.a	ENSGT00940000155326.b	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000004199	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000172289	ENSGT00940000158854	ENSGT01020000230394.e.a.a.b.a.a.b.a.a	ENSGT00940000165995	ENSGT00940000157446	ENSGT00390000018852	ENSGT00940000155048.d.a	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a.a	ENSGT00940000153456.b.b
Javanese ricefish	MODERN SPECIES	19	pdrg1 (ENSOJAG00000023058)	ENSOJAG00000023054	aldh1l1 (ENSOJAG00000022974)	ENSOJAG00000022957	RIMS4 (ENSOJAG00000022948)	ENSOJAG00000022946	LSM3 (ENSOJAG00000022940)	slc6a6b (ENSOJAG00000022599)	GRIP2 (ENSOJAG00000022415)	zgc:171566 (ENSOJAG00000022369)	PTPRT (ENSOJAG00000021654)	FAM107A (ENSOJAG00000021577)	ENSOJAG00000021558	ENSOJAG00000021557	mkrn2 (ENSOJAG00000021537) #20	MKRN2OS (ENSOJAG00000021535) #22	tsen2 (ENSOJAG00000021525) #23	rbm39a (ENSOJAG00000021406)	si:ch211-15p9.2 (ENSOJAG00000021403)	nuf2 (ENSOJAG00000021383)	ENSOJAG00000021378	SERINC3 (ENSOJAG00000021032)	ENSOJAG00000021007	ENSOJAG00000020618	si:dkey-19e4.5 (ENSOJAG00000020554)	ENSOJAG00000020540	MTMR14 (ENSOJAG00000019586)	ptprga (ENSOJAG00000019432)	fezf2 (ENSOJAG00000019416)	ENSOJAG00000018501	nampt2 (ENSOJAG00000018259)
Indian medaka	MODERN SPECIES	8	znf831 (ENSOMEG00000001982)	ENSOMEG00000001978	pdrg1 (ENSOMEG00000001971)	aldh1l1 (ENSOMEG00000001957)	ENSOMEG00000001945	RIMS4 (ENSOMEG00000001933)	ENSOMEG00000001927	LSM3 (ENSOMEG00000001915)	slc6a6b (ENSOMEG00000001907)	ENSOMEG00000001898	GRIP2 (ENSOMEG00000001874)	zgc:171566 (ENSOMEG00000001809)	PTPRT (ENSOMEG00000001773)	FAM107A (ENSOMEG00000001711)	mkrn2 (ENSOMEG00000001704) #20	MKRN2OS (ENSOMEG00000001696) #22	tsen2 (ENSOMEG00000001692) #23	rbm39a (ENSOMEG00000001685)	si:ch211-15p9.2 (ENSOMEG00000001677)	nuf2 (ENSOMEG00000001674)	SERINC3 (ENSOMEG00000001667)	ENSOMEG00000001657	ENSOMEG00000001653	ENSOMEG00000001639	si:dkey-19e4.5 (ENSOMEG00000001615)	ENSOMEG00000001605	MTMR14 (ENSOMEG00000001585)	ptprga (ENSOMEG00000001562)	fezf2 (ENSOMEG00000001553)	ENSOMEG00000001533	nampt2 (ENSOMEG00000001493)
Ovalentaria_B	ANCESTRAL SPECIES	30	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234583.a.a.c.b.a.a.b.a.b.a.b	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Cichlidae	ANCESTRAL SPECIES	39	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b	ENSGT01030000234648.a.a.c.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	50	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Haplochromini	ANCESTRAL SPECIES	55	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b
Burton s mouthbrooder	MODERN SPECIES	1485																MKRN2OS (ENSHBUG00000008118) #22
Haplochromini_A	ANCESTRAL SPECIES	61	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000181725	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052
Haplochromini_B	ANCESTRAL SPECIES	74	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00940000181725	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052
Zebra mbuna	MODERN SPECIES	476													ENSMZEG00005023973	FAM107A (ENSMZEG00005023974)	mkrn2 (ENSMZEG00005023975) #20	MKRN2OS (ENSMZEG00005023976) #22	ENSMZEG00005023977
Eastern happy	MODERN SPECIES	17	nicn1 (ENSACLG00000013534)	ENSACLG00000013707	GRM7 (ENSACLG00000013783)	ENSACLG00000013886	ENSACLG00000013891	ENSACLG00000013900	RNF123 (ENSACLG00000013912)	AMIGO3 (ENSACLG00000014028)	ENSACLG00000014039	aldh4a1 (ENSACLG00000014062)	ASCL5 (ENSACLG00000014120)	ENSACLG00000014134	ENSACLG00000014216	FAM107A (ENSACLG00000014232)	mkrn2 (ENSACLG00000014256) #20	MKRN2OS (ENSACLG00000014293) #22	tsen2 (ENSACLG00000014303) #23	rbm39a (ENSACLG00000014339)	si:ch211-15p9.2 (ENSACLG00000014394)	ENSACLG00000014402	isy1 (ENSACLG00000014430)	ENSACLG00000014458	pcif1 (ENSACLG00000014471)	DNTTIP1 (ENSACLG00000014543)	polr2j (ENSACLG00000014564)	ube2c (ENSACLG00000014635)	zgc:109913 (ENSACLG00000014668)	ENSACLG00000014682	snrpb (ENSACLG00000014707)	ENSACLG00000014728	ENSACLG00000014740
P. nyererei	MODERN SPECIES	810															mkrn2 (ENSPNYG00000010905) #20	MKRN2OS (ENSPNYG00000010925) #22	ENSPNYG00000010948	rbm39a (ENSPNYG00000010982)	ENSPNYG00000011089	DNTTIP1 (ENSPNYG00000011127)	ENSPNYG00000011186	ENSPNYG00000011196
Lyretail cichlid	MODERN SPECIES	374	rbm15b (ENSNBRG00000007512)	pcbp4 (ENSNBRG00000007475)	dag1 (ENSNBRG00000007446)	ENSNBRG00000007394	ENSNBRG00000007381	ENSNBRG00000007377	ENSNBRG00000007363	AMIGO3 (ENSNBRG00000007350)	ENSNBRG00000007338	aldh4a1 (ENSNBRG00000007308)	ENSNBRG00000007286	ENSNBRG00000007273	PIK3C2B (ENSNBRG00000007196)	ENSNBRG00000007180	mkrn2 (ENSNBRG00000007146) #20	MKRN2OS (ENSNBRG00000007129) #22	tsen2 (ENSNBRG00000007105) #23	rbm39a (ENSNBRG00000007057)	si:ch211-15p9.2 (ENSNBRG00000007016)	ENSNBRG00000006996	isy1 (ENSNBRG00000006974)	ENSNBRG00000006938	pcif1 (ENSNBRG00000006900)	pcif1 (ENSNBRG00000006865)	ENSNBRG00000006661	polr2j (ENSNBRG00000006580)	ube2c (ENSNBRG00000006560)	zgc:109913 (ENSNBRG00000006543)	ENSNBRG00000006517	ENSNBRG00000006497	snrpb (ENSNBRG00000006353)
Midas cichlid	MODERN SPECIES	681								grm8b (ENSACIG00000022439)	ENSACIG00000022447	dnase1l4.2 (ENSACIG00000022468)	sec13 (ENSACIG00000022500) #33	cand2 (ENSACIG00000022514) #17	PIK3C2B (ENSACIG00000022606)	FAM107A (ENSACIG00000022815)	mkrn2 (ENSACIG00000022839) #20	MKRN2OS (ENSACIG00000022850) #22	tsen2 (ENSACIG00000022861) #23	rbm39a (ENSACIG00000022910)
Pomacentridae	ANCESTRAL SPECIES	125														ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138	ENSGT00880000138014.b
Pomacentridae_A	ANCESTRAL SPECIES	131														ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00700000104550.a.i
Amphiprion	ANCESTRAL SPECIES	219														ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138	ENSGT00940000155052	ENSGT00880000138014.b	ENSGT00940000175508.a.a.a.b.d
Orange clownfish	MODERN SPECIES	20	rbbp5 (ENSAPEG00000022468)	zgc:153675 (ENSAPEG00000022448)	hgh1 (ENSAPEG00000022424)	ENSAPEG00000022416	ENSAPEG00000022397	ENSAPEG00000022368	ENSAPEG00000022339	ccdc71 (ENSAPEG00000022297)	ddx27 (ENSAPEG00000022281)	pltp (ENSAPEG00000022254)	khk (ENSAPEG00000022116)	ENSAPEG00000022073	ENSAPEG00000022054	ENSAPEG00000022016	mkrn2 (ENSAPEG00000021987) #20	MKRN2OS (ENSAPEG00000021959) #22	tsen2 (ENSAPEG00000021947) #23	rbm39a (ENSAPEG00000021927)	si:ch211-15p9.2 (ENSAPEG00000021920)	isy1 (ENSAPEG00000021883)	ENSAPEG00000021832	pcif1 (ENSAPEG00000021778)	ENSAPEG00000021737	polr2j (ENSAPEG00000021761)	ube2c (ENSAPEG00000021682)	zgc:109913 (ENSAPEG00000021662)	ENSAPEG00000021651	ENSAPEG00000021623	snrpb (ENSAPEG00000021585)	ctsa (ENSAPEG00000021535)	ENSAPEG00000021523
Clown anemonefish	MODERN SPECIES	1246														FAM107A (ENSAOCG00000007309)	mkrn2 (ENSAOCG00000007297) #20	MKRN2OS (ENSAOCG00000007255) #22	tsen2 (ENSAOCG00000007248) #23	rbm39a (ENSAOCG00000007223)	si:ch211-15p9.2 (ENSAOCG00000007205)	isy1 (ENSAOCG00000007147)	ENSAOCG00000001904	pcif1 (ENSAOCG00000007011)	DNTTIP1 (ENSAOCG00000006955)	polr2j (ENSAOCG00000006937)	ube2c (ENSAOCG00000002648)	zgc:109913 (ENSAOCG00000000355)	ENSAOCG00000006889	snrpb (ENSAOCG00000006876)	ENSAOCG00000006868	ctsa (ENSAOCG00000024524)	ENSAOCG00000024512
Spiny chromis	MODERN SPECIES	2747														FAM107A (ENSAPOG00000014651)	mkrn2 (ENSAPOG00000014842) #20	MKRN2OS (ENSAPOG00000014856) #22
Bicolor damselfish	MODERN SPECIES	924											hdac11 (ENSSPAG00000021638)	FBLN2 (ENSSPAG00000021662)	wnt7aa (ENSSPAG00000021691)	FAM107A (ENSSPAG00000021701)	mkrn2 (ENSSPAG00000021715) #20	ENSSPAG00000021741 #22	ENSSPAG00000021756 #23	ENSSPAG00000021777	ENSSPAG00000021789	rbm39a (ENSSPAG00000021798)	si:ch211-15p9.2 (ENSSPAG00000021816)	ENSSPAG00000021850	isy1 (ENSSPAG00000021900)	ENSSPAG00000021911	pcif1 (ENSSPAG00000021921)	DNTTIP1 (ENSSPAG00000021948)	polr2j (ENSSPAG00000021953)	ube2c (ENSSPAG00000021961)	zgc:109913 (ENSSPAG00000021969)	ENSSPAG00000021975	snrpb (ENSSPAG00000021992)
Cod	MODERN SPECIES	4	ENSGMOG00000000101	ENSGMOG00000010859	ENSGMOG00000025779	ENSGMOG00000022253	GLUT1 (ENSGMOG00000011678)	CPNE1 (ENSGMOG00000011530)	ENSGMOG00000009599	RBM39 (ENSGMOG00000017567)	ENSGMOG00000029915	ENSGMOG00000009106	isy1 (ENSGMOG00000005635)	ENSGMOG00000007798	mkrn2 (ENSGMOG00000018490) #20	ENSGMOG00000035527 #22	ENSGMOG00000023593	ENSGMOG00000022525 #22	tsen2 (ENSGMOG00000024153) #23	ENSGMOG00000032377	ENSGMOG00000030222	ENSGMOG00000016662	ENSGMOG00000029077	ENSGMOG00000018161	ENSGMOG00000027984	zgc:109913 (ENSGMOG00000018184)	ube2c (ENSGMOG00000018194)	ENSGMOG00000023449	ENSGMOG00000018215	pcif1 (ENSGMOG00000018230)	pltp (ENSGMOG00000006431)	ctsa (ENSGMOG00000009336)	ENSGMOG00000010983
Protacanthopterygii	ANCESTRAL SPECIES	95	ENSGT00940000160218	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000004199	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000156062.m #25	ENSGT00940000159798 #26	ENSGT00940000167517.a
Northern pike	MODERN SPECIES	1	FBLN2 (ENSELUG00000013779)	ENSELUG00000030211	hdac11 (ENSELUG00000026940)	IQSEC1 (ENSELUG00000013644) #15	acad9 (ENSELUG00000013607)	ENSELUG00000013547	ENSELUG00000013517	nuf2 (ENSELUG00000013487)	rab43 (ENSELUG00000013468)	zgc:77375 (ENSELUG00000013454)	isy1 (ENSELUG00000000489)	ENSELUG00000013402	raf1b (ENSELUG00000013381) #19	mkrn2 (ENSELUG00000013320) #20	ENSELUG00000013290 #22	MKRN2OS (ENSELUG00000013278) #22	tsen2 (ENSELUG00000013262) #23	PPARG (ENSELUG00000013192) #24	timp4.3 (ENSELUG00000028743) #26	syn2b (ENSELUG00000013135)
Salmoninae	ANCESTRAL SPECIES	400	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00390000014109	ENSGT00950000183041.A.a.a.a	ENSGT00940000156084.b #19	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Salmoninae_a	ANCESTRAL SPECIES	78	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a.a.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000156084.b #19	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Oncorhynchus	ANCESTRAL SPECIES	81	ENSGT00940000158148.e	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT01040000241044	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Oncorhynchus_a	ANCESTRAL SPECIES	95	ENSGT00940000158148.e	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT01040000241044	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Chinook salmon	MODERN SPECIES	31	pxk (ENSOTSG00005007907)	HTD2 (ENSOTSG00005007975)	rpp14 (ENSOTSG00005007976)	ABHD6 (ENSOTSG00005007977)	DNASE1L3 (ENSOTSG00005007981)	FLNB (ENSOTSG00005008043)	phactr3b (ENSOTSG00005028097)	ENSOTSG00005028100	PPP1R3D (ENSOTSG00005028101)	ENSOTSG00005028103	wnt7aa (ENSOTSG00005028104)	ENSOTSG00005028106	ptpdc1a (ENSOTSG00005028109)	tsen2 (ENSOTSG00005028112) #23	ENSOTSG00005028113 #22	MKRN2OS (ENSOTSG00005028114) #22	PPARG (ENSOTSG00005028118) #24
Spotted gar	MODERN SPECIES	671	NUP210 (ENSLOCG00000014031)	IQSEC1 (ENSLOCG00000014026) #15	acad9 (ENSLOCG00000014020)	ENSLOCG00000014017	ENSLOCG00000014014	GP9 (ENSLOCG00000018262)	ENSLOCG00000018261	nuf2 (ENSLOCG00000014009)	nuf2 (ENSLOCG00000014004)	rab43 (ENSLOCG00000014001)	zgc:77375 (ENSLOCG00000013994)	isy1 (ENSLOCG00000013988)	cnbpb (ENSLOCG00000013985)	raf1b (ENSLOCG00000013974) #19	mkrn2 (ENSLOCG00000013970) #20	MKRN2OS (ENSLOCG00000013968) #22	tsen2 (ENSLOCG00000013958) #23	PPARG (ENSLOCG00000013954) #24	timp4.2 (ENSLOCG00000013951) #26	syn2a (ENSLOCG00000013941) #25	tamm41 (ENSLOCG00000013931) #27	vgll4b (ENSLOCG00000013927) #28	ATG7 (ENSLOCG00000013924) #29	HRH1 (ENSLOCG00000013921)	slc6a1a (ENSLOCG00000013915) #30	SLC6A11 (ENSLOCG00000013904) #31	atp2b2 (ENSLOCG00000013890)	iars1 (ENSLOCG00000013871)	ENSLOCG00000013869	nol8 (ENSLOCG00000013864)	ogna (ENSLOCG00000013860)
Reedfish	MODERN SPECIES	9	NUP210 (ENSECRG00000021120)	NUP210 (ENSECRG00000021042)	IQSEC1 (ENSECRG00000020985) #15	acad9 (ENSECRG00000020941)	ENSECRG00000020909	EFCC1 (ENSECRG00000020895)	GP9 (ENSECRG00000020886)	ENSECRG00000020870	nuf2 (ENSECRG00000020838)	rab43 (ENSECRG00000020826)	zgc:77375 (ENSECRG00000020811)	isy1 (ENSECRG00000020784)	cnbpb (ENSECRG00000020753)	raf1b (ENSECRG00000020686) #19	mkrn2 (ENSECRG00000020646) #20	MKRN2OS (ENSECRG00000020632) #22	TSEN2 (ENSECRG00000020616) #23	PPARG (ENSECRG00000020604) #24	timp4.2 (ENSECRG00000020586) #26	syn2a (ENSECRG00000020574) #25	tamm41 (ENSECRG00000020546) #27	vgll4b (ENSECRG00000019720) #28	ATG7 (ENSECRG00000019598) #29	HRH1 (ENSECRG00000019568)	slc6a1a (ENSECRG00000019515) #30	SLC6A11 (ENSECRG00000019456) #31	ENSECRG00000019113	ENSECRG00000019049	iars1 (ENSECRG00000019013)	nol8 (ENSECRG00000018962)	ogna (ENSECRG00000018922)
Actinopterygii	ANCESTRAL SPECIES	14	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062 #25	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860
Neopterygii	ANCESTRAL SPECIES	38	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915 #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00530000064244.a	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000156062 #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027 #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00620000089227
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00990000205530	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183041.A.a.b	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798 #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084
Clupeocephala	ANCESTRAL SPECIES	20	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D
Otomorpha	ANCESTRAL SPECIES	29									ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084
Clupeiformes	ANCESTRAL SPECIES	214													ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084
Atlantic herring	MODERN SPECIES	21	CAV3 (ENSCHAG00000009540)	ENSCHAG00000009548	ENSCHAG00000009554	parp3 (ENSCHAG00000009559)	GRM2 (ENSCHAG00000009645)	tex264a (ENSCHAG00000009710)	fancd2 (ENSCHAG00000009730)	ENSCHAG00000010316	ENSCHAG00000010466	emc3 (ENSCHAG00000014853)	tmem45b (ENSCHAG00000014956)	gng8 (ENSCHAG00000014964)	ENSCHAG00000014985	raf1b (ENSCHAG00000015158) #19	mkrn2 (ENSCHAG00000015498) #20	ENSCHAG00000015536 #22	MKRN2OS (ENSCHAG00000015545) #22	tsen2 (ENSCHAG00000015557) #23	PPARG (ENSCHAG00000015643) #24	syn2b (ENSCHAG00000015897)	timp4.2 (ENSCHAG00000017406) #26	tamm41 (ENSCHAG00000017413) #27	vgll4b (ENSCHAG00000017431) #28	ATG7 (ENSCHAG00000017457) #29	HRH1 (ENSCHAG00000017743)	slc6a1b (ENSCHAG00000017782) #30	SLC6A11 (ENSCHAG00000018702) #31	atp2b2 (ENSCHAG00000019399)	iars1 (ENSCHAG00000019757)	tnnc1a (ENSCHAG00000019978)	rpl29 (ENSCHAG00000020005)
Denticle herring	MODERN SPECIES	3	ENSDCDG00000026821	slc48a1b (ENSDCDG00000026820)	ITGA5 (ENSDCDG00000021357)	bin2b (ENSDCDG00000021235)	stk35l (ENSDCDG00000021227)	GRM2 (ENSDCDG00000021222)	tex264a (ENSDCDG00000021219)	fancd2 (ENSDCDG00000020972)	ENSDCDG00000020954	gpx1a (ENSDCDG00000020953)	ENSDCDG00000016718	emc3 (ENSDCDG00000016651)	ENSDCDG00000016645	raf1b (ENSDCDG00000016216) #19	mkrn2 (ENSDCDG00000016143) #20	ENSDCDG00000016138 #22	MKRN2OS (ENSDCDG00000016136) #22	tsen2 (ENSDCDG00000016127) #23	PPARG (ENSDCDG00000016087) #24	timp4.2 (ENSDCDG00000016082) #26	tamm41 (ENSDCDG00000016077) #27	syn2b (ENSDCDG00000035419)	tamm41 (ENSDCDG00000035411) #27	vgll4b (ENSDCDG00000035408) #28	ATG7 (ENSDCDG00000035327) #29	HRH1 (ENSDCDG00000035297)	slc6a1b (ENSDCDG00000035164) #30	SLC6A11 (ENSDCDG00000035032) #31	atp2b2 (ENSDCDG00000034974)	iars1 (ENSDCDG00000034943)	ENSDCDG00000034913
Otophysi	ANCESTRAL SPECIES	247									ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a
Cyprinoidei	ANCESTRAL SPECIES	131											ENSGT00390000004199	ENSGT00940000161980.i.a	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798.h #26	ENSGT00940000159798.g #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569.l #31	ENSGT00940000166500	ENSGT00550000074921
Cyprininae	ANCESTRAL SPECIES	787											ENSGT00940000157804.l	ENSGT00390000010265.b	ENSGT00390000004199	ENSGT00950000183041.A.a.b.e.b	ENSGT00940000156084.s.a #19	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00940000158273.a #24	ENSGT00940000167517.c
Goldfish	MODERN SPECIES	52								sp1 (ENSCARG00000048237)	ENSCARG00000048251	myg1 (ENSCARG00000048256)	ENSCARG00000048338	col2a1b (ENSCARG00000048371)	ENSCARG00000048583	nuf2 (ENSCARG00000048607)	cnbpb (ENSCARG00000048701)	ENSCARG00000049212 #22	MKRN2OS (ENSCARG00000049228) #22	ENSCARG00000049249 #24	ENSCARG00000049341	syn2b (ENSCARG00000049357)	ENSCARG00000049673	vgll4b (ENSCARG00000049678) #28	HRH1 (ENSCARG00000049702)	slc6a1b (ENSCARG00000049707) #30	SLC6A11 (ENSCARG00000049911) #31	atp2b2 (ENSCARG00000054003)	LRP1 (ENSCARG00000060823)	ENSCARG00000061928	ENSCARG00000061950	ENSCARG00000061968	mybl2b (ENSCARG00000061994)
Cyprininae_a	ANCESTRAL SPECIES	535									ENSGT00940000157804.l	ENSGT00390000010265.b	ENSGT00390000010265.a	ENSGT00940000155224.c.a	ENSGT00390000004199	ENSGT00950000183041.A.a.b.e.b	ENSGT00940000156084.s.a #19	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00940000158273.a #24	ENSGT00940000167517.c	ENSGT00940000159798.h.a.a #26	ENSGT00940000159798.g.a.a #26
Common carp reference	MODERN SPECIES	13										ENSCCRG00000041693	ENSCCRG00000058306	ENSCCRG00000018254	ENSCCRG00000059611	ENSCCRG00000048194	ENSCCRG00000021288	ENSCCRG00000030779 #22	MKRN2OS (ENSCCRG00000080573) #22	ENSCCRG00000028460 #24	TIMP4 (ENSCCRG00000067355) #26	ENSCCRG00000054276	ENSCCRG00000075001	TIMP4 (ENSCCRG00000058279) #26	ENSCCRG00000080358	ENSCCRG00000065400	vgll4b (ENSCCRG00000081211) #28	ATG7 (ENSCCRG00000069201) #29	slc6a1b (ENSCCRG00000066274) #30	SLC6A11 (ENSCCRG00000064612) #31	atp2b2 (ENSCCRG00000009632)	iars1 (ENSCCRG00000029865)	rpl29 (ENSCCRG00000007746)
Golden-line barbel	MODERN SPECIES	919									rab43 (ENSSGRG00000035390)	zgc:77375 (ENSSGRG00000035392)	isy1 (ENSSGRG00000035398)	cnbpb (ENSSGRG00000035512)	raf1b (ENSSGRG00000035606) #19	mkrn2 (ENSSGRG00000036465) #20	ENSSGRG00000036467	ENSSGRG00000036468 #22	ENSSGRG00000036469	PPARG (ENSSGRG00000036484) #24	syn2b (ENSSGRG00000036635)	TIMP4 (ENSSGRG00000036636) #26	TIMP4 (ENSSGRG00000036637) #26	tamm41 (ENSSGRG00000036638) #27	vgll4b (ENSSGRG00000036647) #28	ATG7 (ENSSGRG00000036655) #29	HRH1 (ENSSGRG00000036658)
Zebrafish	MODERN SPECIES	2	slc11a2 (ENSDARG00000024295)	mettl1 (ENSDARG00000076518)	POC1A (ENSDARG00000078533)	cyp27b1 (ENSDARG00000045015)	pdrg1 (ENSDARG00000045017)	ENSDARG00000109591	znf831 (ENSDARG00000074906)	nuf2 (ENSDARG00000034624)	rab43 (ENSDARG00000059404)	zgc:77375 (ENSDARG00000004282)	isy1 (ENSDARG00000063466)	cnbpb (ENSDARG00000070922)	raf1b (ENSDARG00000059406) #19	ENSDARG00000105417	mkrn2 (ENSDARG00000007630) #20	ENSDARG00000086655 #22	MKRN2OS (ENSDARG00000100728) #22	tsen2 (ENSDARG00000091851) #23	pparg (ENSDARG00000031848)	syn2b (ENSDARG00000101054)	TIMP4 (ENSDARG00000111805) #26	timp4.2 (ENSDARG00000102617) #26	timp4.3 (ENSDARG00000100795) #26	vgll4b (ENSDARG00000103730) #28	tamm41 (ENSDARG00000100157) #27	ATG7 (ENSDARG00000102893) #29	slc6a1b (ENSDARG00000039647) #30	SLC6A11 (ENSDARG00000087981) #31	atp2b2 (ENSDARG00000063433)	iars1 (ENSDARG00000007955)	rpl29 (ENSDARG00000077717)
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00940000157238.a	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000156062.m #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166043
Channel catfish	MODERN SPECIES	13	ogn (ENSIPUG00000011040)	OMD (ENSIPUG00000011045)	aspn (ENSIPUG00000011058)	ecm2 (ENSIPUG00000011082)	ippk (ENSIPUG00000011110)	si:dkey-42i9.4 (ENSIPUG00000011123)	atrip (ENSIPUG00000011138)	shisa5 (ENSIPUG00000011229)	nuf2 (ENSIPUG00000011256)	RAB43 (ENSIPUG00000011323)	zgc:77375 (ENSIPUG00000011342)	Isy1 (ENSIPUG00000011379)	ENSIPUG00000011418	raf1 (ENSIPUG00000011435) #19	mkrn2 (ENSIPUG00000011589) #20	ENSIPUG00000011635 #22	MKRN2OS (ENSIPUG00000011647) #22	tsen2 (ENSIPUG00000011651) #23	PPARG (ENSIPUG00000011668) #24	syn2 (ENSIPUG00000011716)	timp4 (ENSIPUG00000011732) #26	tamm41 (ENSIPUG00000011765) #27	vgll4 (ENSIPUG00000011872) #28	atg7 (ENSIPUG00000011898) #29	hrh1 (ENSIPUG00000011966)	slc6a1 (ENSIPUG00000011974) #30	slc6a11 (ENSIPUG00000012021) #31	atp2b2 (ENSIPUG00000012098)	iars (ENSIPUG00000012333)	gdf11 (ENSIPUG00000012483)	Sarnp (ENSIPUG00000012503)
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000156062.m #25	ENSGT00940000159798 #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166043
Characoidei	ANCESTRAL SPECIES	38	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00940000156084 #19	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00390000015124	ENSGT00390000016940.c.a.b	ENSGT00940000158593.a	ENSGT00950000183188.A.a.a	ENSGT00940000159517	ENSGT00390000002944	ENSGT00940000166043	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #31
Red-bellied piranha	MODERN SPECIES	103	OMD (ENSPNAG00000006585)	aspn (ENSPNAG00000008046)	ECM2 (ENSPNAG00000008055)	cenpp (ENSPNAG00000000629)	ippk (ENSPNAG00000008073)	si:dkey-42i9.4 (ENSPNAG00000008076)	atrip (ENSPNAG00000008094)	shisa10.1 (ENSPNAG00000000671)	nuf2 (ENSPNAG00000000683)	rab43 (ENSPNAG00000000692)	zgc:77375 (ENSPNAG00000008127)	isy1 (ENSPNAG00000000703)	ENSPNAG00000008143	raf1b (ENSPNAG00000008167) #19	mkrn2 (ENSPNAG00000008184) #20	ENSPNAG00000000758 #22	MKRN2OS (ENSPNAG00000008194) #22	tsen2 (ENSPNAG00000008203) #23	PPARG (ENSPNAG00000008214) #24	timp4.3 (ENSPNAG00000008221) #26	syn2b (ENSPNAG00000000793)	timeless (ENSPNAG00000008298)	ENSPNAG00000000887	MMP19 (ENSPNAG00000000896)	pmela (ENSPNAG00000008382)	cdk2 (ENSPNAG00000008407)	sarnp (ENSPNAG00000000975)	gdf11 (ENSPNAG00000008415)	iars1 (ENSPNAG00000008441)	atp2b2 (ENSPNAG00000008513)	SLC6A11 (ENSPNAG00000008559) #31
Mexicana tetra	MODERN SPECIES	14	rrp9 (ENSAMXG00000006788)	grm2b (ENSAMXG00000006790)	ENSAMXG00000034242	ippk (ENSAMXG00000033401)	ENSAMXG00000041795	si:dkey-42i9.4 (ENSAMXG00000005289)	atrip (ENSAMXG00000005302)	shisa10.1 (ENSAMXG00000039145)	nuf2 (ENSAMXG00000005348)	rab43 (ENSAMXG00000032172)	zgc:77375 (ENSAMXG00000029468)	isy1 (ENSAMXG00000005423)	ENSAMXG00000005433	raf1b (ENSAMXG00000005440) #19	mkrn2 (ENSAMXG00000005535) #20	ENSAMXG00000038911 #22	MKRN2OS (ENSAMXG00000005712) #22	tsen2 (ENSAMXG00000043484) #23	PPARG (ENSAMXG00000043041) #24	syn2b (ENSAMXG00000032883)	timp4.3 (ENSAMXG00000042051) #26	timeless (ENSAMXG00000005979)	ENSAMXG00000036008	MMP19 (ENSAMXG00000006031)	pmela (ENSAMXG00000006095)	cdk2 (ENSAMXG00000030741)	sarnp (ENSAMXG00000004834)	gdf11 (ENSAMXG00000039058)	iars1 (ENSAMXG00000036265)	ENSAMXG00000041363	atp2b2 (ENSAMXG00000000039)
Electric eel	MODERN SPECIES	753															mkrn2 (ENSEEEG00000014624) #20	MKRN2OS (ENSEEEG00000014625) #22	tsen2 (ENSEEEG00000014628) #23	PPARG (ENSEEEG00000014631) #24	ENSEEEG00000014668	SYN2 (ENSEEEG00000014669) #25	timp4.3 (ENSEEEG00000014670) #26	tamm41 (ENSEEEG00000014672) #27	vgll4b (ENSEEEG00000014673) #28
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000167517	ENSGT00940000159798 #26	ENSGT00940000156062.m #25	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084
Protacanthopterygii	ANCESTRAL SPECIES	95	ENSGT00940000158148	ENSGT00940000160218	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000004199	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000156062.m #25	ENSGT00940000159798 #26	ENSGT00940000167517.a
Salmoninae	ANCESTRAL SPECIES	400	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00390000014109	ENSGT00950000183041.A.a.a.a	ENSGT00940000156084.b #19	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Huchen	MODERN SPECIES	6547															ENSHHUG00000004965	ENSHHUG00000004972 #22	ENSHHUG00000004983
Salmoninae_a	ANCESTRAL SPECIES	78	ENSGT00940000158148.e	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a.a.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000156084.b #19	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Salmo	ANCESTRAL SPECIES	61	ENSGT00530000063168.a.a.a.e	ENSGT00940000158148.e	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000156084.b #19	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
River trout	MODERN SPECIES	7	wnt7aa (ENSSTUG00000036082)	ENSSTUG00000035792	ENSSTUG00000035774	hdac11 (ENSSTUG00000035494)	IQSEC1 (ENSSTUG00000035075) #15	ENSSTUG00000035002	EFCC1 (ENSSTUG00000034995)	ENSSTUG00000034980	ENSSTUG00000034976	ENSSTUG00000034973	rab43 (ENSSTUG00000034972)	zgc:77375 (ENSSTUG00000034964)	ENSSTUG00000034948	raf1b (ENSSTUG00000034296) #19	mkrn2 (ENSSTUG00000034245) #20	MKRN2OS (ENSSTUG00000034234) #22	ENSSTUG00000034229	tsen2 (ENSSTUG00000034204) #23	PPARG (ENSSTUG00000034013) #24
Atlantic salmon	MODERN SPECIES	14	barx1 (ENSSSAG00000114886)	ptpdc1a (ENSSSAG00000008674)	ENSSSAG00000064612	FBLN2 (ENSSSAG00000008760)	hdac11 (ENSSSAG00000008746)	ENSSSAG00000121382	IQSEC1 (ENSSSAG00000009162) #15	ENSSSAG00000008800	ENSSSAG00000091562	ENSSSAG00000008818	rab43 (ENSSSAG00000117714)	zgc:77375 (ENSSSAG00000084248)	ENSSSAG00000008850	raf1b (ENSSSAG00000015667) #19	mkrn2 (ENSSSAG00000028437) #20	mkrn2os (ENSSSAG00000028619) #22	tsen2 (ENSSSAG00000028772) #23	PPARG (ENSSSAG00000029040) #24
Oncorhynchus	ANCESTRAL SPECIES	81	ENSGT00530000063168.a.a.a.f.a	ENSGT00940000158148.e	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT01040000241044	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Oncorhynchus_a	ANCESTRAL SPECIES	95	ENSGT00530000063168.a.a.a.f.a	ENSGT00940000158148.e	ENSGT00940000160218.i	ENSGT00940000164549.a.b	ENSGT00940000158523.c.b	ENSGT01040000241044	ENSGT00940000156047.a.b	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00390000008330	ENSGT00940000163561	ENSGT00940000161980	ENSGT00940000164112.a.l	ENSGT00950000183041.A.a.a.a.b	ENSGT00950000183077.a.b.s #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273.n #24
Chinook salmon	MODERN SPECIES	31	pdhb (ENSOTSG00005007891)	pxk (ENSOTSG00005007907)	HTD2 (ENSOTSG00005007975)	rpp14 (ENSOTSG00005007976)	ABHD6 (ENSOTSG00005007977)	DNASE1L3 (ENSOTSG00005007981)	FLNB (ENSOTSG00005008043)	phactr3b (ENSOTSG00005028097)	ENSOTSG00005028100	PPP1R3D (ENSOTSG00005028101)	ENSOTSG00005028103	wnt7aa (ENSOTSG00005028104)	ENSOTSG00005028106	ptpdc1a (ENSOTSG00005028109)	tsen2 (ENSOTSG00005028112) #23	ENSOTSG00005028113 #22	MKRN2OS (ENSOTSG00005028114) #22	PPARG (ENSOTSG00005028118) #24
Coho salmon	MODERN SPECIES	25	ENSOKIG00005027442	barx1 (ENSOKIG00005027461)	ptpdc1a (ENSOKIG00005027491)	WNT7A (ENSOKIG00005027513)	ENSOKIG00005027544	FBLN2 (ENSOKIG00005027579)	hdac11 (ENSOKIG00005027857)	IQSEC1 (ENSOKIG00005027932) #15	ENSOKIG00005027979	ENSOKIG00005028031	rab43 (ENSOKIG00005028040)	zgc:77375 (ENSOKIG00005028061)	ENSOKIG00005028124	mkrn2 (ENSOKIG00005028154) #20	ENSOKIG00005028181	MKRN2OS (ENSOKIG00005000038) #22	TSEN2 (ENSOKIG00005000064) #23	ENSOKIG00005000081	PPARG (ENSOKIG00005000160) #24	ENSOKIG00005000199
Rainbow trout	MODERN SPECIES	28								ENSOMYG00000006946	ENSOMYG00000023229	rab43 (ENSOMYG00000006335)	ENSOMYG00000066321	zgc:77375 (ENSOMYG00000006359)	ENSOMYG00000059639	ENSOMYG00000006436	mkrn2 (ENSOMYG00000006467) #20	ENSOMYG00000006499 #22	ENSOMYG00000006513	ENSOMYG00000053804	PPARG (ENSOMYG00000006827) #24	ENSOMYG00000062142	ENSOMYG00000052537	IQSEC1 (ENSOMYG00000006284) #15	HDAC11 (ENSOMYG00000006191)	FBLN2 (ENSOMYG00000056000)	ENSOMYG00000058266	ENSOMYG00000074785	ENSOMYG00000071314	ptpdc1a (ENSOMYG00000006063)	barx1 (ENSOMYG00000006021)	ENSOMYG00000068585	phf2 (ENSOMYG00000005882)
Northern pike	MODERN SPECIES	1	wnt7aa (ENSELUG00000013813)	FBLN2 (ENSELUG00000013779)	ENSELUG00000030211	hdac11 (ENSELUG00000026940)	IQSEC1 (ENSELUG00000013644) #15	acad9 (ENSELUG00000013607)	ENSELUG00000013547	ENSELUG00000013517	nuf2 (ENSELUG00000013487)	rab43 (ENSELUG00000013468)	zgc:77375 (ENSELUG00000013454)	isy1 (ENSELUG00000000489)	ENSELUG00000013402	raf1b (ENSELUG00000013381) #19	mkrn2 (ENSELUG00000013320) #20	ENSELUG00000013290 #22	MKRN2OS (ENSELUG00000013278) #22	tsen2 (ENSELUG00000013262) #23	PPARG (ENSELUG00000013192) #24	timp4.3 (ENSELUG00000028743) #26	syn2b (ENSELUG00000013135)
Acanthomorphata	ANCESTRAL SPECIES	299												ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000178764
Euacanthomorphacea	ANCESTRAL SPECIES	95	ENSGT00880000138014.b	ENSGT00550000074997	ENSGT01100000264229	ENSGT00940000155052	ENSGT00940000169138	ENSGT00730000111020.b.b	ENSGT00940000153725.a.a	ENSGT00930000150941	ENSGT00550000074975	ENSGT00510000047836	ENSGT00390000016206	ENSGT00940000164112.b	ENSGT00390000014109	ENSGT00950000183041.A.a.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482
Percomorphaceae	ANCESTRAL SPECIES	33	ENSGT00940000160663	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000171658	ENSGT00940000178492	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00940000178764	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT01030000235208	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138
Carangaria	ANCESTRAL SPECIES	34									ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00560000077335	ENSGT00940000178492	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138
Carangaria_A	ANCESTRAL SPECIES	81											ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138
Seriola	ANCESTRAL SPECIES	69	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.b.b.c.b.b.a.a.b	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163190.h.a.b.`b	ENSGT00940000163190.h.a.b.ab	ENSGT00940000163190.g.a	ENSGT00970000193381.a.b.b.c.b.b.a.a.a	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000155052	ENSGT00940000169138
Yellowtail amberjack	MODERN SPECIES	2784		ENSSLDG00000021892	RNF123 (ENSSLDG00000021901)	AMIGO3 (ENSSLDG00000021955)	aldh4a1 (ENSSLDG00000021961)	ENSSLDG00000021996	ENSSLDG00000022006	ENSSLDG00000022012	ENSSLDG00000022021	ASCL5 (ENSSLDG00000022029)	ENSSLDG00000022032	PIK3C2B (ENSSLDG00000022056)	ENSSLDG00000022106	FAM107A (ENSSLDG00000022117)	mkrn2 (ENSSLDG00000022136) #20	ENSSLDG00000022143 #22	ENSSLDG00000022152 #22	ENSSLDG00000022171 #23	rbm39a (ENSSLDG00000022188)	si:ch211-15p9.2 (ENSSLDG00000022216)	ENSSLDG00000022237	isy1 (ENSSLDG00000022252)	ENSSLDG00000022265	pcif1 (ENSSLDG00000022277)	ENSSLDG00000022332	polr2j (ENSSLDG00000022354)	ube2c (ENSSLDG00000022361)	zgc:109913 (ENSSLDG00000022371)	ENSSLDG00000022379	snrpb (ENSSLDG00000022391)	ENSSLDG00000022403
Greater amberjack	MODERN SPECIES	25	AMIGO3 (ENSSDUG00000017937)	aldh4a1 (ENSSDUG00000017947)	ENSSDUG00000017981	ENSSDUG00000017993	ENSSDUG00000018007	ENSSDUG00000018009	ENSSDUG00000018013	ENSSDUG00000018027	ENSSDUG00000018032	ENSSDUG00000018040	ASCL5 (ENSSDUG00000018046)	ENSSDUG00000018049	PIK3C2B (ENSSDUG00000018064)	FAM107A (ENSSDUG00000018125)	mkrn2 (ENSSDUG00000018142) #20	ENSSDUG00000018155 #22	MKRN2OS (ENSSDUG00000018163) #22	tsen2 (ENSSDUG00000018175) #23	rbm39a (ENSSDUG00000018191)	si:ch211-15p9.2 (ENSSDUG00000018226)	ENSSDUG00000018275	isy1 (ENSSDUG00000018291)	ENSSDUG00000018317	pcif1 (ENSSDUG00000018400)	DNTTIP1 (ENSSDUG00000018467)	polr2j (ENSSDUG00000018490)	ube2c (ENSSDUG00000018505)	zgc:109913 (ENSSDUG00000018521)	ENSSDUG00000018530	snrpb (ENSSDUG00000018539)	ENSSDUG00000018549
Barramundi perch	MODERN SPECIES	440			RNF123 (ENSLCAG00010022972)	AMIGO3 (ENSLCAG00010023202)	ENSLCAG00010023204	ENSLCAG00010023206	aldh4a1 (ENSLCAG00010023227)	ENSLCAG00010023249	ASCL5 (ENSLCAG00010023252)	ENSLCAG00010023255	PIK3C2B (ENSLCAG00010023268)	ENSLCAG00010023304	ENSLCAG00010023306	ENSLCAG00010023309	mkrn2 (ENSLCAG00010023314) #20	ENSLCAG00010023317 #22	ENSLCAG00010023318	tsen2 (ENSLCAG00010023322) #23	rbm39a (ENSLCAG00010023335)	si:ch211-15p9.2 (ENSLCAG00010023339)	ENSLCAG00010023348	isy1 (ENSLCAG00010023375)	ENSLCAG00010023383	pcif1 (ENSLCAG00010023409)	ENSLCAG00010023427	polr2j (ENSLCAG00010023436)	ube2c (ENSLCAG00010023448)	zgc:109913 (ENSLCAG00010023453)	ENSLCAG00010023456	snrpb (ENSLCAG00010023468)	ENSLCAG00010023478
Anabantaria	ANCESTRAL SPECIES		ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT01030000235208	ENSGT00390000013266 #23	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.b	ENSGT00390000016206	ENSGT00510000047836	ENSGT00550000074975	ENSGT00930000150941	ENSGT00940000153725.a.a	ENSGT00730000111020.b.b	ENSGT00940000169138
Anabantoidei	ANCESTRAL SPECIES	92																ENSGT00390000003839.b #22	ENSGT00390000003839.a #22
Climbing perch	MODERN SPECIES	18	ENSATEG00000008577	ENSATEG00000008680	ENSATEG00000025280	ENSATEG00000008720	ENSATEG00000008739	ENSATEG00000008775	ENSATEG00000026741	ENSATEG00000008817	ENSATEG00000009115	ENSATEG00000009148	ENSATEG00000009200	ENSATEG00000009210	ENSATEG00000009229	ENSATEG00000009337	mkrn2 (ENSATEG00000009352) #20	ENSATEG00000029135 #22	ENSATEG00000028083 #22	ENSATEG00000026035	ENSATEG00000009443	ENSATEG00000009461	ENSATEG00000009504	ENSATEG00000009521	ENSATEG00000009541	ENSATEG00000009619	ENSATEG00000028604	ENSATEG00000028967	ENSATEG00000027254	ube2c (ENSATEG00000009751)	ENSATEG00000009791	ENSATEG00000009807	ENSATEG00000009836
Pinecone sodierfish	MODERN SPECIES	19	ctsa (ENSMMDG00005013692)	pltp (ENSMMDG00005013687)	ddx27 (ENSMMDG00005013342)	ENSMMDG00005013325	snrpb (ENSMMDG00005013323)	ENSMMDG00005013318	zgc:109913 (ENSMMDG00005013317)	ube2c (ENSMMDG00005013313)	polr2j (ENSMMDG00005013312)	ENSMMDG00005013309	pcif1 (ENSMMDG00005013278)	ENSMMDG00005013263	isy1 (ENSMMDG00005013257)	ENSMMDG00005013255	mkrn2 (ENSMMDG00005013246) #20	ENSMMDG00005013242 #22	ENSMMDG00005013239	ENSMMDG00005013237	rbm39a (ENSMMDG00005013094)	si:ch211-15p9.2 (ENSMMDG00005013091)	nfs1 (ENSMMDG00005011282)	rbm12 (ENSMMDG00005011245)	cpne1 (ENSMMDG00005010269)	ENSMMDG00005010251	HTD2 (ENSMMDG00005010249)	ENSMMDG00005010247	st3gal8 (ENSMMDG00005010238)	REM1 (ENSMMDG00005010198)	pnp4a (ENSMMDG00005010023)	trib3 (ENSMMDG00005010013)	atrip (ENSMMDG00005010009)
Cod	MODERN SPECIES	4	pacsin1b (ENSGMOG00000000108)	SPDEF (ENSGMOG00000000105)	ENSGMOG00000000101	ENSGMOG00000010859	ENSGMOG00000025779	ENSGMOG00000022253	GLUT1 (ENSGMOG00000011678)	CPNE1 (ENSGMOG00000011530)	ENSGMOG00000009599	RBM39 (ENSGMOG00000017567)	ENSGMOG00000029915	ENSGMOG00000009106	isy1 (ENSGMOG00000005635)	ENSGMOG00000007798	mkrn2 (ENSGMOG00000018490) #20	ENSGMOG00000035527 #22	ENSGMOG00000023593	ENSGMOG00000022525 #22	tsen2 (ENSGMOG00000024153) #23	ENSGMOG00000032377	ENSGMOG00000030222	ENSGMOG00000016662	ENSGMOG00000029077	ENSGMOG00000018161	ENSGMOG00000027984	zgc:109913 (ENSGMOG00000018184)	ube2c (ENSGMOG00000018194)	ENSGMOG00000023449	ENSGMOG00000018215	pcif1 (ENSGMOG00000018230)	pltp (ENSGMOG00000006431)
Osteoglossiformes	ANCESTRAL SPECIES	57	ENSGT00940000158523.c.b	ENSGT00940000158523.d	ENSGT00940000156047.a	ENSGT00940000156308	ENSGT00940000156915.f.b #15	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00390000004199	ENSGT00940000161980	ENSGT00940000164112.a	ENSGT00390000014109	ENSGT00950000183041.A.a.b	ENSGT00940000156084 #19	ENSGT00950000183077.a.b.p #20	ENSGT00390000003839.b #22	ENSGT00390000003839.a #22	ENSGT00390000013266 #23	ENSGT00940000158273 #24	ENSGT00940000159798.b #26	ENSGT00940000156062.m #25	ENSGT00940000159798.a.b #26	ENSGT00390000000616 #27	ENSGT00390000003282.B.f #28	ENSGT00390000017509 #29	ENSGT00940000160690	ENSGT00940000156027.b #30	ENSGT00940000157569 #31	ENSGT00940000166500.k	ENSGT00550000074921	ENSGT00940000153541.D
P. kingsleyae	MODERN SPECIES	60	TEAD3 (ENSPKIG00000024423)	TULP1 (ENSPKIG00000024476)	ENSPKIG00000024482	ENSPKIG00000024490	ENSPKIG00000024498	ENSPKIG00000024509	ENSPKIG00000024519	ENSPKIG00000024532	nuf2 (ENSPKIG00000024545)	rab43 (ENSPKIG00000024563)	ENSPKIG00000024576	isy1 (ENSPKIG00000024592)	cnbpb (ENSPKIG00000024603)	raf1b (ENSPKIG00000024636) #19	MKRN2 (ENSPKIG00000024724) #20	ENSPKIG00000024788 #22	MKRN2OS (ENSPKIG00000024791) #22	tsen2 (ENSPKIG00000024801) #23	PPARG (ENSPKIG00000024820) #24	SYN2 (ENSPKIG00000024841) #25	TIMP4 (ENSPKIG00000024854) #26	tamm41 (ENSPKIG00000024860) #27	vgll4b (ENSPKIG00000024872) #28	ATG7 (ENSPKIG00000024886) #29	HRH1 (ENSPKIG00000024898)	slc6a1b (ENSPKIG00000024901) #30	SLC6A11 (ENSPKIG00000024908) #31	atp2b2 (ENSPKIG00000024938)	ENSPKIG00000024988	iars1 (ENSPKIG00000025011)	tnnc1a (ENSPKIG00000025038)
Elephant shark	MODERN SPECIES	1592	FBLN2 (ENSCMIG00000011392)	hdac11 (ENSCMIG00000011388)	NUP210 (ENSCMIG00000011053)	IQSEC1 (ENSCMIG00000010972) #15	acad9 (ENSCMIG00000010969)	ENSCMIG00000010964	EFCC1 (ENSCMIG00000010962)	ENSCMIG00000010960	ENSCMIG00000010954	rab43 (ENSCMIG00000010951)	zgc:77375 (ENSCMIG00000010950)	isy1 (ENSCMIG00000010938)	cnbpb (ENSCMIG00000010936)	raf1b (ENSCMIG00000010901) #19	mkrn2 (ENSCMIG00000010891) #20	mkrn2os (ENSCMIG00000010887) #22	tsen2 (ENSCMIG00000010886) #23	PPARG (ENSCMIG00000010883) #24	TIMP4 (ENSCMIG00000010881) #26	syn2a (ENSCMIG00000010866) #25
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000003839 #22
Hagfish	DUPLICATION
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	954											ENSEBUG00000011083	ENSEBUG00000003380	alg6 (ENSEBUG00000014417)	ENSEBUG00000012186	ENSEBUG00000003790	ENSEBUG00000009134 #22	ENSEBUG00000014130	ENSEBUG00000000733	ENSEBUG00000014559	ENSEBUG00000003596	ENSEBUG00000013061	ADAMTS6 (ENSEBUG00000004954)	cdc20 (ENSEBUG00000000952)	gpx7 (ENSEBUG00000009825)	ENSEBUG00000008907	ENSEBUG00000007984	ENSEBUG00000016997	ENSEBUG00000012175	ENSEBUG00000007619	NIM1K (ENSEBUG00000002390)	ENSEBUG00000016386
Hagfish	MODERN SPECIES	65	ENSEBUG00000008899	prpf6 (ENSEBUG00000008835)	colgalt1b (ENSEBUG00000004269)	ENSEBUG00000012633	ENSEBUG00000003355	psmc3 (ENSEBUG00000006111)	ENSEBUG00000007039	ENSEBUG00000009764	ENSEBUG00000010717	romo1 (ENSEBUG00000000426)	ENSEBUG00000009156	ENSEBUG00000007264	ENSEBUG00000005596	ENSEBUG00000010249	traf6 (ENSEBUG00000006238)	ENSEBUG00000014631 #22	ENSEBUG00000008687	ENSEBUG00000003469
Hagfish	MODERN SPECIES	886									ENSEBUG00000003874	ENSEBUG00000010117	ENSEBUG00000001868	ENSEBUG00000004888	PIP5K1C (ENSEBUG00000016467)	ENSEBUG00000014357	NARS1 (ENSEBUG00000012384)	ENSEBUG00000003174 #22	snupn (ENSEBUG00000006682)	arpp19b (ENSEBUG00000011367)	ENSEBUG00000012122	ENSEBUG00000013894	cpsf4 (ENSEBUG00000012552)	ENSEBUG00000012028	ENSEBUG00000015363	ENSEBUG00000007070	ENSEBUG00000002812	ergic2 (ENSEBUG00000006514)	far1 (ENSEBUG00000007567)	ENSEBUG00000013789	ENSEBUG00000012029	ENSEBUG00000004498	ENSEBUG00000007291