Euarchontoglires_A	ANCESTRAL SPECIES	25	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000172945	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Glires	ANCESTRAL SPECIES	26	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000172945	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Rodentia	ANCESTRAL SPECIES	21	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000172945	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000172945	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000172945	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a
Degu	MODERN SPECIES	77	ENSODEG00000007854 #7	EBF2 (ENSODEG00000007640) #8	ENSODEG00000006905 #9	ENSODEG00000007418 #10	KCTD9 (ENSODEG00000008616) #11	GNRH1 (ENSODEG00000007834) #12	DOCK5 (ENSODEG00000007523) #13	NEFL (ENSODEG00000007183) #14	NEFM (ENSODEG00000008392) #15	ENSODEG00000007521 #16	ADAM7 (ENSODEG00000007547) #17	ADAMDEC1 (ENSODEG00000008034) #18	ADAM28 (ENSODEG00000007875) #19	STC1 (ENSODEG00000007382) #20	NKX2-6 (ENSODEG00000007413) #21	NKX3-1 (ENSODEG00000007004) #22	SLC25A37 (ENSODEG00000007363) #23	ENTPD4 (ENSODEG00000009788) #24	ENSODEG00000009404 #25	LOXL2 (ENSODEG00000006938) #26	R3HCC1 (ENSODEG00000007529) #27	ENSODEG00000019474 #28	ENSODEG00000007294 #29	RHOBTB2 (ENSODEG00000007111) #30	ENSODEG00000008725 #31	EGR3 (ENSODEG00000007442) #32	BIN3 (ENSODEG00000006965) #33	CCAR2 (ENSODEG00000008466) #34	C8orf58 (ENSODEG00000006637) #35	PDLIM2 (ENSODEG00000006028) #36	SORBS3 (ENSODEG00000007179) #37
Long-tailed chinchilla	MODERN SPECIES	110	BNIP3L (ENSCLAG00000016223)	PPP2R2A (ENSCLAG00000013984)	EBF2 (ENSCLAG00000013500) #8	CDCA2 (ENSCLAG00000011981) #10	KCTD9 (ENSCLAG00000013948) #11	GNRH1 (ENSCLAG00000014234) #12	DOCK5 (ENSCLAG00000015174) #13	NEFL (ENSCLAG00000014935) #14	ENSCLAG00000013799	ADAM7 (ENSCLAG00000013174) #17	ENSCLAG00000015375 #18	ADAM28 (ENSCLAG00000016310) #19	ENSCLAG00000015807	STC1 (ENSCLAG00000014786) #20	NKX2-6 (ENSCLAG00000014720) #21	NKX3-1 (ENSCLAG00000013957) #22	SLC25A37 (ENSCLAG00000014235) #23	ENTPD4 (ENSCLAG00000013899) #24	LOXL2 (ENSCLAG00000016283) #26	R3HCC1 (ENSCLAG00000015556) #27	CHMP7 (ENSCLAG00000015529) #29	ENSCLAG00000013896	RHOBTB2 (ENSCLAG00000014037) #30	PEBP4 (ENSCLAG00000015116)	EGR3 (ENSCLAG00000016373) #32	BIN3 (ENSCLAG00000016398) #33	CCAR2 (ENSCLAG00000014299) #34	C8orf58 (ENSCLAG00000014186) #35	ENSCLAG00000014272 #36	SORBS3 (ENSCLAG00000014309) #37	PPP3CC (ENSCLAG00000015203)
Guinea pig	MODERN SPECIES	1	ADRA1A (ENSCPOG00000038399)	DPYSL2 (ENSCPOG00000025679)	BNIP3L (ENSCPOG00000034680)	PPP2R2A (ENSCPOG00000026784)	EBF2 (ENSCPOG00000001463) #8	CDCA2 (ENSCPOG00000036890) #10	KCTD9 (ENSCPOG00000015540) #11	GNRH1 (ENSCPOG00000015538) #12	DOCK5 (ENSCPOG00000015533) #13	NEFL (ENSCPOG00000023838) #14	ENSCPOG00000027410	ADAM7 (ENSCPOG00000001538) #17	ADAMDEC1 (ENSCPOG00000038140) #18	ADAM28 (ENSCPOG00000009707) #19	STC1 (ENSCPOG00000034351) #20	NKX3-1 (ENSCPOG00000040229) #22	SLC25A37 (ENSCPOG00000035237) #23	ENTPD4 (ENSCPOG00000009705) #24	LOXL2 (ENSCPOG00000009701) #26	R3HCC1 (ENSCPOG00000009696) #27	CHMP7 (ENSCPOG00000002456) #29	RHOBTB2 (ENSCPOG00000039763) #30	PEBP4 (ENSCPOG00000015616)	EGR3 (ENSCPOG00000038322) #32	BIN3 (ENSCPOG00000010994) #33	CCAR2 (ENSCPOG00000010985) #34	C8orf58 (ENSCPOG00000039428) #35	ENSCPOG00000020871 #36	SORBS3 (ENSCPOG00000001115) #37	PPP3CC (ENSCPOG00000001113)	SLC39A14 (ENSCPOG00000001112)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000036572	ENSHGLG00000018824 #11	GNRH1 (ENSHGLG00000017902) #12	DOCK5 (ENSHGLG00000017514) #13	ENSHGLG00000050046	NEFL (ENSHGLG00000017653) #14	ENSHGLG00000019352	ENSHGLG00000036278	ADAM7 (ENSHGLG00000017673) #17	ADAMDEC1 (ENSHGLG00000011872) #18	ADAM28 (ENSHGLG00000018858) #19	ENSHGLG00000040240	STC1 (ENSHGLG00000040196) #20	NKX2-6 (ENSHGLG00000014624) #21	ENSHGLG00000044875	NKX3-1 (ENSHGLG00000049073) #22	SLC25A37 (ENSHGLG00000036264) #23	ENSHGLG00000032907	ENSHGLG00000010644 #24	LOXL2 (ENSHGLG00000012019) #26	R3HCC1 (ENSHGLG00000010517) #27	ENSHGLG00000009513 #29	ENSHGLG00000032756	RHOBTB2 (ENSHGLG00000016441) #30	ENSHGLG00000049596	PEBP4 (ENSHGLG00000042512)	EGR3 (ENSHGLG00000040205) #32	BIN3 (ENSHGLG00000014664) #33	CCAR2 (ENSHGLG00000015483) #34	ENSHGLG00000010238 #35	PDLIM2 (ENSHGLG00000007806) #36
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314.j #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000154418.a.b #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a
Marmotini	ANCESTRAL SPECIES	30	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314.j #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000159453.e.b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a
Marmotini_b	ANCESTRAL SPECIES	87										ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000159453.e.b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162957	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a
Arctic ground squirrel	MODERN SPECIES	186										ADAM7 (ENSUPAG00010017328) #17	ADAMDEC1 (ENSUPAG00010017356) #18	ADAM28 (ENSUPAG00010017386) #19	ENSUPAG00010017423	STC1 (ENSUPAG00010017427) #20	NKX2-6 (ENSUPAG00010017433) #21	NKX3-1 (ENSUPAG00010017442) #22	SLC25A37 (ENSUPAG00010017448) #23	ENTPD4 (ENSUPAG00010017458) #24	LOXL2 (ENSUPAG00010017498) #26	R3HCC1 (ENSUPAG00010017502) #27	CHMP7 (ENSUPAG00010017507) #29	ENSUPAG00010017525	RHOBTB2 (ENSUPAG00010017538) #30	PEBP4 (ENSUPAG00010017546)	EGR3 (ENSUPAG00010017554) #32	BIN3 (ENSUPAG00010017563) #33	CCAR2 (ENSUPAG00010017585) #34	C8orf58 (ENSUPAG00010017613) #35	PDLIM2 (ENSUPAG00010017621) #36	SORBS3 (ENSUPAG00010017635) #37	PPP3CC (ENSUPAG00010017686)
Squirrel	MODERN SPECIES	155											ADAM7 (ENSSTOG00000012955) #17	ADAMDEC1 (ENSSTOG00000032677) #18	ADAM28 (ENSSTOG00000006248) #19	STC1 (ENSSTOG00000007507) #20	NKX2-6 (ENSSTOG00000025482) #21	NKX3-1 (ENSSTOG00000029597) #22	SLC25A37 (ENSSTOG00000025533) #23	ENTPD4 (ENSSTOG00000015892) #24	LOXL2 (ENSSTOG00000015878) #26	R3HCC1 (ENSSTOG00000027130) #27	CHMP7 (ENSSTOG00000015867) #29	ENSSTOG00000001440	RHOBTB2 (ENSSTOG00000029109) #30	PEBP4 (ENSSTOG00000032426)	EGR3 (ENSSTOG00000021065) #32	BIN3 (ENSSTOG00000011677) #33	CCAR2 (ENSSTOG00000011666) #34	C8orf58 (ENSSTOG00000021866) #35	PDLIM2 (ENSSTOG00000024161) #36	SORBS3 (ENSSTOG00000011660) #37	PPP3CC (ENSSTOG00000028936)
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005003080	EBF2 (ENSSVLG00005003172) #8	CDCA2 (ENSSVLG00005003275) #10	KCTD9 (ENSSVLG00005003331) #11	GNRH1 (ENSSVLG00005003367) #12	DOCK5 (ENSSVLG00005003397) #13	ENSSVLG00005003428	ENSSVLG00005003443	NEFL (ENSSVLG00005003461) #14	NEFM (ENSSVLG00005003494) #15	ADAM7 (ENSSVLG00005003562) #17	ADAMDEC1 (ENSSVLG00005003660) #18	ADAM28 (ENSSVLG00005003701) #19	STC1 (ENSSVLG00005003730) #20	NKX2-6 (ENSSVLG00005003752) #21	NKX3-1 (ENSSVLG00005003772) #22	SLC25A37 (ENSSVLG00005003790) #23	ENTPD4 (ENSSVLG00005003809) #24	LOXL2 (ENSSVLG00005003840) #26	R3HCC1 (ENSSVLG00005003877) #27	CHMP7 (ENSSVLG00005003902) #29	RHOBTB2 (ENSSVLG00005003947) #30	PEBP4 (ENSSVLG00005003991)	ENSSVLG00005004016	BIN3 (ENSSVLG00005004049) #33	CCAR2 (ENSSVLG00005004079) #34	C8orf58 (ENSSVLG00005004115) #35	PDLIM2 (ENSSVLG00005004159) #36	SORBS3 (ENSSVLG00005004211) #37	ENSSVLG00005004276	SLC39A14 (ENSSVLG00005004424)
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a	ENSGT00940000157986
Myomorpha	ANCESTRAL SPECIES	29	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a	ENSGT00940000157986
Muroidea	ANCESTRAL SPECIES	26	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a	ENSGT00940000157986
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Cricetidae	ANCESTRAL SPECIES	15	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000154418.a.b #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Cricetinae	ANCESTRAL SPECIES	18	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000154418.a.b #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37	ENSGT00940000154115.c.a
Chinese hamster chok1gshd	MODERN SPECIES	3	Pnma2 (ENSCGRG00001010753)	Bnip3l (ENSCGRG00001021504)	Ppp2r2a (ENSCGRG00001015307)	Ebf2 (ENSCGRG00001001432) #8	Cdca2 (ENSCGRG00001022349) #10	Kctd9 (ENSCGRG00001022797) #11	Gnrh1 (ENSCGRG00001000327) #12	Dock5 (ENSCGRG00001021195) #13	Nefl (ENSCGRG00001016408) #14	ENSCGRG00001011263 #15	Adam7 (ENSCGRG00001010547) #17	Adamdec1 (ENSCGRG00001013228) #18	Adam28 (ENSCGRG00001009338) #19	Stc1 (ENSCGRG00001019183) #20	Nkx2-6 (ENSCGRG00001007878) #21	Nkx3-1 (ENSCGRG00001019912) #22	Slc25a37 (ENSCGRG00001008508) #23	Synb (ENSCGRG00001011259)	ENSCGRG00001018845 #24	Loxl2 (ENSCGRG00001000163) #26	R3hcc1 (ENSCGRG00001014977) #27	Chmp7 (ENSCGRG00001021741) #29	Rhobtb2 (ENSCGRG00001023228) #30	Egr3 (ENSCGRG00001009879) #32	Bin3 (ENSCGRG00001014908) #33	Ccar2 (ENSCGRG00001010031) #34	9930012K11Rik (ENSCGRG00001022180) #35	Pdlim2 (ENSCGRG00001018717) #36	Sorbs3 (ENSCGRG00001019180) #37	Ppp3cc (ENSCGRG00001021761)	Slc39a14 (ENSCGRG00001020763)
Golden Hamster	MODERN SPECIES	642												Adamdec1 (ENSMAUG00000021097) #18	Adam28 (ENSMAUG00000012592) #19	ENSMAUG00000020290 #20	Nkx2-6 (ENSMAUG00000002996) #21	Nkx3-1 (ENSMAUG00000020666) #22	Slc25a37 (ENSMAUG00000013175) #23	ENSMAUG00000012065 #24	Loxl2 (ENSMAUG00000019178) #26	R3hcc1 (ENSMAUG00000016096) #27	Chmp7 (ENSMAUG00000017878) #29	Rhobtb2 (ENSMAUG00000003682) #30	Pebp4 (ENSMAUG00000012682)	Egr3 (ENSMAUG00000000747) #32	Bin3 (ENSMAUG00000013983) #33	Ccar2 (ENSMAUG00000011127) #34	9930012K11Rik (ENSMAUG00000021973) #35	Pdlim2 (ENSMAUG00000019610) #36	Sorbs3 (ENSMAUG00000021963) #37	Ppp3cc (ENSMAUG00000000668)	Slc39a14 (ENSMAUG00000018755)
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000154418.a.b #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Northern American deer mouse	MODERN SPECIES	22	Ppp2r2a (ENSPEMG00000022593)	Ebf2 (ENSPEMG00000007776) #8	Cdca2 (ENSPEMG00000021129) #10	Kctd9 (ENSPEMG00000020895) #11	Gnrh1 (ENSPEMG00000030807) #12	Dock5 (ENSPEMG00000023361) #13	Nefl (ENSPEMG00000020765) #14	Nefm (ENSPEMG00000020646)	Adam7 (ENSPEMG00000012803) #17	Adamdec1 (ENSPEMG00000004402) #18	Adam28 (ENSPEMG00000015520) #19	ENSPEMG00000030090	ENSPEMG00000027026	Stc1 (ENSPEMG00000027424) #20	Nkx2-6 (ENSPEMG00000005851) #21	Nkx3-1 (ENSPEMG00000026785) #22	Slc25a37 (ENSPEMG00000017275) #23	Synb (ENSPEMG00000024700)	ENSPEMG00000018234 #24	Loxl2 (ENSPEMG00000016856) #26	R3hcc1 (ENSPEMG00000007118) #27	ENSPEMG00000028382 #29	ENSPEMG00000029378	Rhobtb2 (ENSPEMG00000001035) #30	Pebp4 (ENSPEMG00000001033)	Egr3 (ENSPEMG00000024575) #32	Bin3 (ENSPEMG00000015277) #33	Ccar2 (ENSPEMG00000009116) #34	9930012K11Rik (ENSPEMG00000016741) #35	Pdlim2 (ENSPEMG00000011746) #36	Sorbs3 (ENSPEMG00000019062) #37
Prairie vole	MODERN SPECIES	4	ENSMOCG00000018617	Ppp2r2a (ENSMOCG00000011317)	ENSMOCG00000005189	Ebf2 (ENSMOCG00000007295) #8	Cdca2 (ENSMOCG00000002388) #10	Kctd9 (ENSMOCG00000016913) #11	Gnrh1 (ENSMOCG00000003491) #12	Dock5 (ENSMOCG00000009188) #13	Nefl (ENSMOCG00000012988) #14	ENSMOCG00000009013 #15	Adam7 (ENSMOCG00000022709) #17	Adamdec1 (ENSMOCG00000021493) #18	Adam28 (ENSMOCG00000010153) #19	Stc1 (ENSMOCG00000003351) #20	Nkx2-6 (ENSMOCG00000002130) #21	Nkx3-1 (ENSMOCG00000001078) #22	Slc25a37 (ENSMOCG00000000710) #23	Synb (ENSMOCG00000018779)	ENSMOCG00000021822 #24	Loxl2 (ENSMOCG00000021272) #26	R3hcc1 (ENSMOCG00000018508) #27	Chmp7 (ENSMOCG00000015254) #29	ENSMOCG00000011818	Cenpj (ENSMOCG00000006479)	Parp4 (ENSMOCG00000016582)	ENSMOCG00000009441	Pspc1 (ENSMOCG00000006060)	Zmym5 (ENSMOCG00000001655)	Zmym2 (ENSMOCG00000019626)	Gja3 (ENSMOCG00000016618)	Gjb2 (ENSMOCG00000016041)
Murinae	ANCESTRAL SPECIES	16	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Mus	ANCESTRAL SPECIES	8	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Mus_A	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a.y	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Mus_B	ANCESTRAL SPECIES	11	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a.y	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Mus_C	ANCESTRAL SPECIES	20	ENSGT00390000013415.a.b.p	ENSGT00950000182864.a.b.a.y	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000154418.a.b #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #26	ENSGT00530000063711.a #27	ENSGT00720000108860 #29	ENSGT00940000162427.j	ENSGT00940000158918 #30	ENSGT00940000162387	ENSGT00940000160355 #32	ENSGT00950000182882.B #33	ENSGT00530000063672.b #34	ENSGT00390000000531 #35	ENSGT00940000160418 #36	ENSGT00940000160558 #37
Steppe mouse	MODERN SPECIES	3084				Cdca2 (ENSMSIG00000023962) #10	Kctd9 (ENSMSIG00000024015) #11	ENSMSIG00000024123 #12	Dock5 (ENSMSIG00000024135) #13	Nefl (ENSMSIG00000024282) #14	ENSMSIG00000024304 #15	Adam7 (ENSMSIG00000024335) #17	Adamdec1 (ENSMSIG00000024360) #18	Adam28 (ENSMSIG00000024389) #19	Stc1 (ENSMSIG00000024577) #20	ENSMSIG00000024592	Nkx2-6 (ENSMSIG00000024600) #21	Nkx3-1 (ENSMSIG00000024609) #22	Slc25a37 (ENSMSIG00000024616) #23	ENSMSIG00000024627	ENSMSIG00000024639 #24	Loxl2 (ENSMSIG00000024664) #26	R3hcc1 (ENSMSIG00000024698) #27	Chmp7 (ENSMSIG00000024716) #29	ENSMSIG00000024730	Tnfrsf10b (ENSMSIG00000024749)	Rhobtb2 (ENSMSIG00000024755) #30	ENSMSIG00000024803	ENSMSIG00000024806
spretus	MODERN SPECIES	5	Pnma2 (MGP_SPRETEiJ_G0020336)	Bnip3l (MGP_SPRETEiJ_G0020337)	Ppp2r2a (MGP_SPRETEiJ_G0020338)	Ebf2 (MGP_SPRETEiJ_G0020339) #8	Cdca2 (MGP_SPRETEiJ_G0020340) #10	Kctd9 (MGP_SPRETEiJ_G0020341) #11	Gnrh1 (MGP_SPRETEiJ_G0020342) #12	Dock5 (MGP_SPRETEiJ_G0020343) #13	Nefm (MGP_SPRETEiJ_G0020344)	Nefl (MGP_SPRETEiJ_G0020345) #14	Adam7 (MGP_SPRETEiJ_G0020346) #17	Adamdec1 (MGP_SPRETEiJ_G0020347) #18	Adam28 (MGP_SPRETEiJ_G0020348) #19	Stc1 (MGP_SPRETEiJ_G0020349) #20	Nkx2-6 (MGP_SPRETEiJ_G0020350) #21	Nkx3-1 (MGP_SPRETEiJ_G0020351) #22	Slc25a37 (MGP_SPRETEiJ_G0020352) #23	MGP_SPRETEiJ_G0020354	MGP_SPRETEiJ_G0020355	MGP_SPRETEiJ_G0020356 #24	MGP_SPRETEiJ_G0020357 #24	Loxl2 (MGP_SPRETEiJ_G0020358) #26	R3hcc1 (MGP_SPRETEiJ_G0020359) #27	Chmp7 (MGP_SPRETEiJ_G0020360) #29	Tnfrsf10b (MGP_SPRETEiJ_G0020361)	Rhobtb2 (MGP_SPRETEiJ_G0020362) #30	Pebp4 (MGP_SPRETEiJ_G0020363)	Egr3 (MGP_SPRETEiJ_G0020364) #32	Bin3 (MGP_SPRETEiJ_G0020365) #33	Ccar2 (MGP_SPRETEiJ_G0020366) #34	9930012K11Rik (MGP_SPRETEiJ_G0020367) #35
Mouse	MODERN SPECIES	5	Pnma2 (ENSMUSG00000046204)	Bnip3l (ENSMUSG00000022051)	Ppp2r2a (ENSMUSG00000022052)	Ebf2 (ENSMUSG00000022053) #8	Cdca2 (ENSMUSG00000048922) #10	Kctd9 (ENSMUSG00000034327) #11	Gnrh1 (ENSMUSG00000015812) #12	Dock5 (ENSMUSG00000044447) #13	Nefm (ENSMUSG00000022054)	Nefl (ENSMUSG00000022055) #14	Adam7 (ENSMUSG00000022056) #17	Adamdec1 (ENSMUSG00000022057) #18	Adam28 (ENSMUSG00000014725) #19	Stc1 (ENSMUSG00000014813) #20	Nkx2-6 (ENSMUSG00000044186) #21	Nkx3-1 (ENSMUSG00000022061) #22	Slc25a37 (ENSMUSG00000034248) #23	Synb (ENSMUSG00000047977)	Entpd4 (ENSMUSG00000095463) #24	Gm16867 (ENSMUSG00000093954)	Gm27179 (ENSMUSG00000098773)	Entpd4b (ENSMUSG00000022066) #24	Loxl2 (ENSMUSG00000034205) #26	R3hcc1 (ENSMUSG00000034194) #27	Chmp7 (ENSMUSG00000034190) #29	Tnfrsf10b (ENSMUSG00000022074)	Rhobtb2 (ENSMUSG00000022075) #30	Pebp4 (ENSMUSG00000022085)	Egr3 (ENSMUSG00000033730) #32	Bin3 (ENSMUSG00000022089) #33	Ccar2 (ENSMUSG00000033712) #34
Ryukyu mouse	MODERN SPECIES	5	Pnma2 (MGP_CAROLIEiJ_G0019444)	Bnip3l (MGP_CAROLIEiJ_G0019445)	MGP_CAROLIEiJ_G0019446	Ebf2 (MGP_CAROLIEiJ_G0019447) #8	Cdca2 (MGP_CAROLIEiJ_G0019448) #10	Kctd9 (MGP_CAROLIEiJ_G0019449) #11	Gnrh1 (MGP_CAROLIEiJ_G0019450) #12	Dock5 (MGP_CAROLIEiJ_G0019451) #13	Nefm (MGP_CAROLIEiJ_G0019452)	Nefl (MGP_CAROLIEiJ_G0019453) #14	Adam7 (MGP_CAROLIEiJ_G0019454) #17	Adamdec1 (MGP_CAROLIEiJ_G0019455) #18	Adam28 (MGP_CAROLIEiJ_G0019456) #19	Stc1 (MGP_CAROLIEiJ_G0019457) #20	Nkx2-6 (MGP_CAROLIEiJ_G0019458) #21	Nkx3-1 (MGP_CAROLIEiJ_G0019459) #22	Slc25a37 (MGP_CAROLIEiJ_G0019460) #23	MGP_CAROLIEiJ_G0019461	MGP_CAROLIEiJ_G0019462	MGP_CAROLIEiJ_G0019463	MGP_CAROLIEiJ_G0019464 #24	MGP_CAROLIEiJ_G0019465 #24	Loxl2 (MGP_CAROLIEiJ_G0019466) #26	R3hcc1 (MGP_CAROLIEiJ_G0019467) #27	Chmp7 (MGP_CAROLIEiJ_G0019468) #29	MGP_CAROLIEiJ_G0019469	Rhobtb2 (MGP_CAROLIEiJ_G0019470) #30	Pebp4 (MGP_CAROLIEiJ_G0019471)	Egr3 (MGP_CAROLIEiJ_G0019472) #32	Bin3 (MGP_CAROLIEiJ_G0019473) #33	Ccar2 (MGP_CAROLIEiJ_G0019474) #34
Shrew mouse	MODERN SPECIES	21	MGP_PahariEiJ_G0030460	Bnip3l (MGP_PahariEiJ_G0030462)	Ppp2r2a (MGP_PahariEiJ_G0030463)	Ebf2 (MGP_PahariEiJ_G0030464) #8	Cdca2 (MGP_PahariEiJ_G0030465) #10	Kctd9 (MGP_PahariEiJ_G0030466) #11	Gnrh1 (MGP_PahariEiJ_G0030467) #12	Dock5 (MGP_PahariEiJ_G0030468) #13	Nefm (MGP_PahariEiJ_G0030469)	Nefl (MGP_PahariEiJ_G0030470) #14	Adam7 (MGP_PahariEiJ_G0030471) #17	Adamdec1 (MGP_PahariEiJ_G0030472) #18	Adam28 (MGP_PahariEiJ_G0030473) #19	Stc1 (MGP_PahariEiJ_G0030474) #20	MGP_PahariEiJ_G0030475 #21	Nkx3-1 (MGP_PahariEiJ_G0030476) #22	Slc25a37 (MGP_PahariEiJ_G0030477) #23	MGP_PahariEiJ_G0030478	MGP_PahariEiJ_G0030479	MGP_PahariEiJ_G0030480	MGP_PahariEiJ_G0030481 #24	MGP_PahariEiJ_G0030482 #24	Loxl2 (MGP_PahariEiJ_G0030483) #26	R3hcc1 (MGP_PahariEiJ_G0030484) #27	Chmp7 (MGP_PahariEiJ_G0030485) #29	MGP_PahariEiJ_G0030486	Rhobtb2 (MGP_PahariEiJ_G0030487) #30	Pebp4 (MGP_PahariEiJ_G0030488)	Egr3 (MGP_PahariEiJ_G0030489) #32	Bin3 (MGP_PahariEiJ_G0030490) #33	Ccar2 (MGP_PahariEiJ_G0030491) #34
Rat	MODERN SPECIES	6	Kctd9 (ENSRNOG00000012951) #11	Gnrh1 (ENSRNOG00000013433)	Dock5 (ENSRNOG00000024703) #13	LOC120097172 (ENSRNOG00000031532)	Nefl (ENSRNOG00000013658) #14	Nefm (ENSRNOG00000013916) #15	Adam7 (ENSRNOG00000014054) #17	Adamdec1 (ENSRNOG00000030724) #18	Adam28 (ENSRNOG00000014518) #19	ENSRNOG00000063586 #19	AABR07018269.1 (ENSRNOG00000031720)	ENSRNOG00000063939	ENSRNOG00000067366	Stc1 (ENSRNOG00000015075) #20	Nkx2-6 (ENSRNOG00000021910) #21	Nkx3-1 (ENSRNOG00000015477) #22	Slc25a37 (ENSRNOG00000015495) #23	Synb (ENSRNOG00000021823)	Entpd4 (ENSRNOG00000016321) #24	Loxl2 (ENSRNOG00000016758) #26	R3hcc1 (ENSRNOG00000016777) #27	Chmp7 (ENSRNOG00000016939) #29	Tnfrsf10b (ENSRNOG00000038483)	Rhobtb2 (ENSRNOG00000017373) #30	Pebp4 (ENSRNOG00000026247)	Egr3 (ENSRNOG00000017828) #32	Bin3 (ENSRNOG00000018023) #33	Ccar2 (ENSRNOG00000018295) #34	C15h8orf58 (ENSRNOG00000008351) #35	Pdlim2 (ENSRNOG00000008543) #36	Sorbs3 (ENSRNOG00000008829) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	487									Nefl (ENSNGAG00000006739) #14	ENSNGAG00000006331	Adam7 (ENSNGAG00000023201) #17	Adamdec1 (ENSNGAG00000018142) #18	Adam28 (ENSNGAG00000007193) #19	Stc1 (ENSNGAG00000023141) #20	Nkx2-6 (ENSNGAG00000022732) #21	Nkx3-1 (ENSNGAG00000021847) #22	Slc25a37 (ENSNGAG00000016465) #23	ENSNGAG00000004016	ENSNGAG00000020742 #24	Loxl2 (ENSNGAG00000022939) #26	R3hcc1 (ENSNGAG00000016747) #27	Chmp7 (ENSNGAG00000015842) #29	Rhobtb2 (ENSNGAG00000014537) #30	Egr3 (ENSNGAG00000014204) #32	Bin3 (ENSNGAG00000012258) #33	Ccar2 (ENSNGAG00000009598) #34	9930012K11Rik (ENSNGAG00000010379) #35	Pdlim2 (ENSNGAG00000007929) #36	Sorbs3 (ENSNGAG00000015206) #37	Ppp3cc (ENSNGAG00000013527)	Slc39a14 (ENSNGAG00000018684)
Lesser Egyptian jerboa	MODERN SPECIES	125	Dpysl2 (ENSJJAG00000021965)	ENSJJAG00000021430	Ppp2r2a (ENSJJAG00000020800)	Ebf2 (ENSJJAG00000018635) #8	ENSJJAG00000016051 #10	Kctd9 (ENSJJAG00000014248) #11	Gnrh1 (ENSJJAG00000013753) #12	Dock5 (ENSJJAG00000012658) #13	Nefl (ENSJJAG00000011034) #14	Nefm (ENSJJAG00000018709)	Adam7 (ENSJJAG00000016655) #17	Adamdec1 (ENSJJAG00000015285) #18	Adam28 (ENSJJAG00000014433) #19	Stc1 (ENSJJAG00000013494) #20	Nkx2-6 (ENSJJAG00000013412) #21	Nkx3-1 (ENSJJAG00000013332) #22	ENSJJAG00000012211	Slc25a37 (ENSJJAG00000012106) #23	ENSJJAG00000010447 #24	Loxl2 (ENSJJAG00000009230) #26	R3hcc1 (ENSJJAG00000013075) #27	Chmp7 (ENSJJAG00000012284) #29	ENSJJAG00000011797	Rhobtb2 (ENSJJAG00000010580) #30	Egr3 (ENSJJAG00000010434) #32	Bin3 (ENSJJAG00000010054) #33	Ccar2 (ENSJJAG00000006864) #34	9930012K11Rik (ENSJJAG00000002660) #35	Pdlim2 (ENSJJAG00000022305) #36	Sorbs3 (ENSJJAG00000020896) #37	Ppp3cc (ENSJJAG00000000657)
Kangaroo rat	MODERN SPECIES	506	Dpysl2 (ENSDORG00000023604)	Pnma2 (ENSDORG00000009340)	Bnip3l (ENSDORG00000028719)	Ppp2r2a (ENSDORG00000019723)	Ebf2 (ENSDORG00000019864) #8	ENSDORG00000007254 #10	Kctd9 (ENSDORG00000007253) #11	Gnrh1 (ENSDORG00000007251) #12	Dock5 (ENSDORG00000012003) #13	Nefl (ENSDORG00000025560) #14	ENSDORG00000027287	Adam7 (ENSDORG00000007281) #17	Adamdec1 (ENSDORG00000007279) #18	Adam28 (ENSDORG00000001473) #19	Stc1 (ENSDORG00000023767) #20	ENSDORG00000024859 #22	Slc25a37 (ENSDORG00000026005) #23	ENSDORG00000008983 #24	Loxl2 (ENSDORG00000011153) #26	R3hcc1 (ENSDORG00000026365) #27	Chmp7 (ENSDORG00000007264) #29	Rhobtb2 (ENSDORG00000004193) #30	Egr3 (ENSDORG00000000937) #32	Bin3 (ENSDORG00000000935) #33	Ccar2 (ENSDORG00000000934) #34	9930012K11Rik (ENSDORG00000000932) #35	ENSDORG00000002868 #36	Sorbs3 (ENSDORG00000002089) #37	Ppp3cc (ENSDORG00000002086)	Slc39a14 (ENSDORG00000002085)	Piwil2 (ENSDORG00000011177)
Lagomorpha	ANCESTRAL SPECIES	60	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #8	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24
Rabbit	MODERN SPECIES	11	EBF2 (ENSOCUG00000011972) #8	CDCA2 (ENSOCUG00000014109) #10	KCTD9 (ENSOCUG00000014099) #11	GNRH1 (ENSOCUG00000014093) #12	DOCK5 (ENSOCUG00000014056) #13	NEFL (ENSOCUG00000023836) #14	ENSOCUG00000021430	ADAM7 (ENSOCUG00000012104) #17	ADAMDEC1 (ENSOCUG00000001597) #18	ADAM28 (ENSOCUG00000004176) #19	ENSOCUG00000032289	ENSOCUG00000037834	ENSOCUG00000033833	STC1 (ENSOCUG00000005708) #20	NKX2-6 (ENSOCUG00000004296) #21	NKX3-1 (ENSOCUG00000004294) #22	SLC25A37 (ENSOCUG00000004114) #23	ENTPD4 (ENSOCUG00000004102) #24	DDX60 (ENSOCUG00000006355)	ENSOCUG00000029856	PALLD (ENSOCUG00000004900)	CBR4 (ENSOCUG00000006446)	SH3RF1 (ENSOCUG00000003098)	ENSOCUG00000038117	ENSOCUG00000031550	NEK1 (ENSOCUG00000016756)	CLCN3 (ENSOCUG00000006220)	HPF1 (ENSOCUG00000026923)	ENSOCUG00000036380	MFAP3L (ENSOCUG00000011514)	AADAT (ENSOCUG00000011526)
Pika	MODERN SPECIES	1500															ENSOPRG00000003185 #21	NKX3-1 (ENSOPRG00000003179) #22	ENSOPRG00000018999	ENSOPRG00000018477	SLC25A37 (ENSOPRG00000003130) #23	ENSOPRG00000003097 #24
Tree shrew	MODERN SPECIES	7913																ENSTBEG00000002319 #22