Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b #7	ENSGT00950000182864.a.b.a #8	ENSGT00950000182859.A.a.a.b #9	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #16	ENSGT00900000141143 #17	ENSGT00940000156716 #18	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000172945	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957 #28	ENSGT00940000158918 #29	ENSGT00940000162387 #30	ENSGT00940000160355 #31	ENSGT00950000182882.B #32	ENSGT00530000063672.b #33	ENSGT00390000000531 #34	ENSGT00940000160418 #35	ENSGT00940000160558 #36
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b #7	ENSGT00950000182864.a.b.a #8	ENSGT00950000182859.A.a.a.b #9	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #16	ENSGT00900000141143 #17	ENSGT00940000156716 #18	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957 #28	ENSGT00940000158918 #29	ENSGT00940000162387 #30	ENSGT00940000160355 #31	ENSGT00950000182882.B #32	ENSGT00530000063672.b #33	ENSGT00390000000531 #34	ENSGT00940000160418 #35	ENSGT00940000160558 #36	ENSGT00940000154115.c.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b #7	ENSGT00950000182864.a.b.a #8	ENSGT00950000182859.A.a.a.b #9	ENSGT00940000154352.A #10	ENSGT00940000154314 #11	ENSGT00390000008225 #12	ENSGT00940000157734 #13	ENSGT00940000156208 #14	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #16	ENSGT00900000141143 #17	ENSGT00940000156716 #18	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957 #28	ENSGT00940000158918 #29	ENSGT00940000162387 #30	ENSGT00940000160355 #31	ENSGT00950000182882.B #32	ENSGT00530000063672.b #33	ENSGT00390000000531 #34	ENSGT00940000160418 #35	ENSGT00940000160558 #36	ENSGT00940000154115.c.a #37
Long-tailed chinchilla	MODERN SPECIES	110	BNIP3L (ENSCLAG00000016223) #7	PPP2R2A (ENSCLAG00000013984) #8	EBF2 (ENSCLAG00000013500) #9	CDCA2 (ENSCLAG00000011981) #10	KCTD9 (ENSCLAG00000013948) #11	GNRH1 (ENSCLAG00000014234) #12	DOCK5 (ENSCLAG00000015174) #13	NEFL (ENSCLAG00000014935) #14	ENSCLAG00000013799 #15	ADAM7 (ENSCLAG00000013174) #16	ENSCLAG00000015375 #17	ADAM28 (ENSCLAG00000016310) #18	ENSCLAG00000015807 #19	STC1 (ENSCLAG00000014786) #20	NKX2-6 (ENSCLAG00000014720) #21	NKX3-1 (ENSCLAG00000013957) #22	SLC25A37 (ENSCLAG00000014235) #23	ENTPD4 (ENSCLAG00000013899) #24	LOXL2 (ENSCLAG00000016283) #25	R3HCC1 (ENSCLAG00000015556) #26	CHMP7 (ENSCLAG00000015529) #27	ENSCLAG00000013896 #28	RHOBTB2 (ENSCLAG00000014037) #29	PEBP4 (ENSCLAG00000015116) #30	EGR3 (ENSCLAG00000016373) #31	BIN3 (ENSCLAG00000016398) #32	CCAR2 (ENSCLAG00000014299) #33	C8orf58 (ENSCLAG00000014186) #34	ENSCLAG00000014272 #35	SORBS3 (ENSCLAG00000014309) #36	PPP3CC (ENSCLAG00000015203) #37
Degu	MODERN SPECIES	77	ENSODEG00000007854	EBF2 (ENSODEG00000007640) #9	ENSODEG00000006905	ENSODEG00000007418 #10	KCTD9 (ENSODEG00000008616) #11	GNRH1 (ENSODEG00000007834) #12	DOCK5 (ENSODEG00000007523) #13	NEFL (ENSODEG00000007183) #14	NEFM (ENSODEG00000008392)	ENSODEG00000007521	ADAM7 (ENSODEG00000007547) #16	ADAMDEC1 (ENSODEG00000008034) #17	ADAM28 (ENSODEG00000007875) #18	STC1 (ENSODEG00000007382) #20	NKX2-6 (ENSODEG00000007413) #21	NKX3-1 (ENSODEG00000007004) #22	SLC25A37 (ENSODEG00000007363) #23	ENTPD4 (ENSODEG00000009788) #24	ENSODEG00000009404	LOXL2 (ENSODEG00000006938) #25	R3HCC1 (ENSODEG00000007529) #26	ENSODEG00000019474	ENSODEG00000007294 #27	RHOBTB2 (ENSODEG00000007111) #29	ENSODEG00000008725	EGR3 (ENSODEG00000007442) #31	BIN3 (ENSODEG00000006965) #32	CCAR2 (ENSODEG00000008466) #33	C8orf58 (ENSODEG00000006637) #34	PDLIM2 (ENSODEG00000006028) #35	SORBS3 (ENSODEG00000007179) #36
Guinea pig	MODERN SPECIES	1	ADRA1A (ENSCPOG00000038399)	DPYSL2 (ENSCPOG00000025679)	BNIP3L (ENSCPOG00000034680) #7	PPP2R2A (ENSCPOG00000026784) #8	EBF2 (ENSCPOG00000001463) #9	CDCA2 (ENSCPOG00000036890) #10	KCTD9 (ENSCPOG00000015540) #11	GNRH1 (ENSCPOG00000015538) #12	DOCK5 (ENSCPOG00000015533) #13	NEFL (ENSCPOG00000023838) #14	ENSCPOG00000027410 #15	ADAM7 (ENSCPOG00000001538) #16	ADAMDEC1 (ENSCPOG00000038140) #17	ADAM28 (ENSCPOG00000009707) #18	STC1 (ENSCPOG00000034351) #20	NKX3-1 (ENSCPOG00000040229) #22	SLC25A37 (ENSCPOG00000035237) #23	ENTPD4 (ENSCPOG00000009705) #24	LOXL2 (ENSCPOG00000009701) #25	R3HCC1 (ENSCPOG00000009696) #26	CHMP7 (ENSCPOG00000002456) #27	RHOBTB2 (ENSCPOG00000039763) #29	PEBP4 (ENSCPOG00000015616) #30	EGR3 (ENSCPOG00000038322) #31	BIN3 (ENSCPOG00000010994) #32	CCAR2 (ENSCPOG00000010985) #33	C8orf58 (ENSCPOG00000039428) #34	ENSCPOG00000020871 #35	SORBS3 (ENSCPOG00000001115) #36	PPP3CC (ENSCPOG00000001113) #37	SLC39A14 (ENSCPOG00000001112)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000036572	ENSHGLG00000018824 #11	GNRH1 (ENSHGLG00000017902) #12	DOCK5 (ENSHGLG00000017514) #13	ENSHGLG00000050046	NEFL (ENSHGLG00000017653) #14	ENSHGLG00000019352 #15	ENSHGLG00000036278	ADAM7 (ENSHGLG00000017673) #16	ADAMDEC1 (ENSHGLG00000011872) #17	ADAM28 (ENSHGLG00000018858) #18	ENSHGLG00000040240	STC1 (ENSHGLG00000040196) #20	NKX2-6 (ENSHGLG00000014624) #21	ENSHGLG00000044875	NKX3-1 (ENSHGLG00000049073) #22	SLC25A37 (ENSHGLG00000036264) #23	ENSHGLG00000032907	ENSHGLG00000010644 #24	LOXL2 (ENSHGLG00000012019) #25	R3HCC1 (ENSHGLG00000010517) #26	ENSHGLG00000009513 #27	ENSHGLG00000032756 #28	RHOBTB2 (ENSHGLG00000016441) #29	ENSHGLG00000049596	PEBP4 (ENSHGLG00000042512) #30	EGR3 (ENSHGLG00000040205) #31	BIN3 (ENSHGLG00000014664) #32	CCAR2 (ENSHGLG00000015483) #33	ENSHGLG00000010238 #34	PDLIM2 (ENSHGLG00000007806) #35