Rodentia_A ANCESTRAL SPECIES 21 ENSGT01030000234522.C.b.e.a.a.b ENSGT00390000013415.a.b ENSGT00950000182864.a.b.a #7 ENSGT00950000182859.A.a.a.b #8 ENSGT00940000154352.A #9 ENSGT00940000154314 #10 ENSGT00390000008225 #11 ENSGT00940000157734 #12 ENSGT00940000156208 #15 ENSGT00940000161685.A.a ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT00940000172945 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 Sciuridae ANCESTRAL SPECIES 29 ENSGT00390000013415.a.b ENSGT00950000182864.a.b.a #7 ENSGT00950000182859.A.a.a.b #8 ENSGT00940000154352.A #9 ENSGT00940000154314.j #10 ENSGT00390000008225 #11 ENSGT00940000157734 #12 ENSGT00940000156208 #15 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #16 ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 ENSGT00940000154115.c.a #36 Eurasian red squirrel MODERN SPECIES 14 ENSSVLG00005003080 #7 EBF2 (ENSSVLG00005003172) #8 CDCA2 (ENSSVLG00005003275) #9 KCTD9 (ENSSVLG00005003331) #10 GNRH1 (ENSSVLG00005003367) #11 DOCK5 (ENSSVLG00005003397) #12 ENSSVLG00005003428 #13 ENSSVLG00005003443 #14 NEFL (ENSSVLG00005003461) #15 NEFM (ENSSVLG00005003494) #16 ADAM7 (ENSSVLG00005003562) #17 ADAMDEC1 (ENSSVLG00005003660) #18 ADAM28 (ENSSVLG00005003701) #19 STC1 (ENSSVLG00005003730) #20 NKX2-6 (ENSSVLG00005003752) #21 NKX3-1 (ENSSVLG00005003772) #22 SLC25A37 (ENSSVLG00005003790) #23 ENTPD4 (ENSSVLG00005003809) #24 LOXL2 (ENSSVLG00005003840) #25 R3HCC1 (ENSSVLG00005003877) #26 CHMP7 (ENSSVLG00005003902) #27 RHOBTB2 (ENSSVLG00005003947) #28 PEBP4 (ENSSVLG00005003991) #29 ENSSVLG00005004016 #30 BIN3 (ENSSVLG00005004049) #31 CCAR2 (ENSSVLG00005004079) #32 C8orf58 (ENSSVLG00005004115) #33 PDLIM2 (ENSSVLG00005004159) #34 SORBS3 (ENSSVLG00005004211) #35 ENSSVLG00005004276 #36 SLC39A14 (ENSSVLG00005004424) #37 Marmotini ANCESTRAL SPECIES 30 ENSGT00390000013415.a.b ENSGT00950000182864.a.b.a #7 ENSGT00950000182859.A.a.a.b #8 ENSGT00940000154352.A #9 ENSGT00940000154314.j #10 ENSGT00390000008225 #11 ENSGT00940000157734 #12 ENSGT00940000156208 #15 ENSGT00940000161685.A.a ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00940000159453.e.b ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 ENSGT00940000154115.c.a #36 Marmotini_b ANCESTRAL SPECIES 87 ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00940000159453.e.b ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 ENSGT00940000154115.c.a #36 Arctic ground squirrel MODERN SPECIES 186 ADAM7 (ENSUPAG00010017328) #17 ADAMDEC1 (ENSUPAG00010017356) #18 ADAM28 (ENSUPAG00010017386) #19 ENSUPAG00010017423 STC1 (ENSUPAG00010017427) #20 NKX2-6 (ENSUPAG00010017433) #21 NKX3-1 (ENSUPAG00010017442) #22 SLC25A37 (ENSUPAG00010017448) #23 ENTPD4 (ENSUPAG00010017458) #24 LOXL2 (ENSUPAG00010017498) #25 R3HCC1 (ENSUPAG00010017502) #26 CHMP7 (ENSUPAG00010017507) #27 ENSUPAG00010017525 RHOBTB2 (ENSUPAG00010017538) #28 PEBP4 (ENSUPAG00010017546) #29 EGR3 (ENSUPAG00010017554) BIN3 (ENSUPAG00010017563) #31 CCAR2 (ENSUPAG00010017585) #32 C8orf58 (ENSUPAG00010017613) #33 PDLIM2 (ENSUPAG00010017621) #34 SORBS3 (ENSUPAG00010017635) #35 PPP3CC (ENSUPAG00010017686) #36 Squirrel MODERN SPECIES 155 ADAM7 (ENSSTOG00000012955) #17 ADAMDEC1 (ENSSTOG00000032677) #18 ADAM28 (ENSSTOG00000006248) #19 STC1 (ENSSTOG00000007507) #20 NKX2-6 (ENSSTOG00000025482) #21 NKX3-1 (ENSSTOG00000029597) #22 SLC25A37 (ENSSTOG00000025533) #23 ENTPD4 (ENSSTOG00000015892) #24 LOXL2 (ENSSTOG00000015878) #25 R3HCC1 (ENSSTOG00000027130) #26 CHMP7 (ENSSTOG00000015867) #27 ENSSTOG00000001440 RHOBTB2 (ENSSTOG00000029109) #28 PEBP4 (ENSSTOG00000032426) #29 EGR3 (ENSSTOG00000021065) BIN3 (ENSSTOG00000011677) #31 CCAR2 (ENSSTOG00000011666) #32 C8orf58 (ENSSTOG00000021866) #33 PDLIM2 (ENSSTOG00000024161) #34 SORBS3 (ENSSTOG00000011660) #35 PPP3CC (ENSSTOG00000028936) #36 Hystricomorpha ANCESTRAL SPECIES 21 ENSGT01030000234527.A.a.b.a.a ENSGT00390000013415.a.b ENSGT00950000182864.a.b.a #7 ENSGT00950000182859.A.a.a.b #8 ENSGT00940000154352.A #9 ENSGT00940000154314 #10 ENSGT00390000008225 #11 ENSGT00940000157734 #12 ENSGT00940000156208 #15 ENSGT00940000161685.A.a ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT00940000172945 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 Hystricomorpha_a ANCESTRAL SPECIES 20 ENSGT01030000234527.A.a.b.a.a ENSGT00390000013415.a.b ENSGT00950000182864.a.b.a #7 ENSGT00950000182859.A.a.a.b #8 ENSGT00940000154352.A #9 ENSGT00940000154314 #10 ENSGT00390000008225 #11 ENSGT00940000157734 #12 ENSGT00940000156208 #15 ENSGT00940000161685.A.a ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 ENSGT00940000154115.c.a #36 Hystricomorpha_b ANCESTRAL SPECIES 30 ENSGT01030000234527.A.a.b.a.a ENSGT00390000013415.a.b ENSGT00950000182864.a.b.a #7 ENSGT00950000182859.A.a.a.b #8 ENSGT00940000154352.A #9 ENSGT00940000154314 #10 ENSGT00390000008225 #11 ENSGT00940000157734 #12 ENSGT00940000156208 #15 ENSGT00940000161685.A.a ENSGT00940000161406 #17 ENSGT00900000141143 #18 ENSGT00940000156716 #19 ENSGT00390000005989.b #20 ENSGT00940000162737 #21 ENSGT00940000160930 #22 ENSGT00940000158607 #23 ENSGT01100000263540.B.d #24 ENSGT00940000155874 #25 ENSGT00530000063711.a #26 ENSGT00720000108860 #27 ENSGT00940000162957 ENSGT00940000158918 #28 ENSGT00940000162387 #29 ENSGT00940000160355 ENSGT00950000182882.B #31 ENSGT00530000063672.b #32 ENSGT00390000000531 #33 ENSGT00940000160418 #34 ENSGT00940000160558 #35 ENSGT00940000154115.c.a #36 Long-tailed chinchilla MODERN SPECIES 110 BNIP3L (ENSCLAG00000016223) PPP2R2A (ENSCLAG00000013984) #7 EBF2 (ENSCLAG00000013500) #8 CDCA2 (ENSCLAG00000011981) #9 KCTD9 (ENSCLAG00000013948) #10 GNRH1 (ENSCLAG00000014234) #11 DOCK5 (ENSCLAG00000015174) #12 NEFL (ENSCLAG00000014935) #15 ENSCLAG00000013799 ADAM7 (ENSCLAG00000013174) #17 ENSCLAG00000015375 #18 ADAM28 (ENSCLAG00000016310) #19 ENSCLAG00000015807 STC1 (ENSCLAG00000014786) #20 NKX2-6 (ENSCLAG00000014720) #21 NKX3-1 (ENSCLAG00000013957) #22 SLC25A37 (ENSCLAG00000014235) #23 ENTPD4 (ENSCLAG00000013899) #24 LOXL2 (ENSCLAG00000016283) #25 R3HCC1 (ENSCLAG00000015556) #26 CHMP7 (ENSCLAG00000015529) #27 ENSCLAG00000013896 RHOBTB2 (ENSCLAG00000014037) #28 PEBP4 (ENSCLAG00000015116) #29 EGR3 (ENSCLAG00000016373) BIN3 (ENSCLAG00000016398) #31 CCAR2 (ENSCLAG00000014299) #32 C8orf58 (ENSCLAG00000014186) #33 ENSCLAG00000014272 #34 SORBS3 (ENSCLAG00000014309) #35 PPP3CC (ENSCLAG00000015203) #36 Degu MODERN SPECIES 77 ENSODEG00000007854 EBF2 (ENSODEG00000007640) #8 ENSODEG00000006905 ENSODEG00000007418 #9 KCTD9 (ENSODEG00000008616) #10 GNRH1 (ENSODEG00000007834) #11 DOCK5 (ENSODEG00000007523) #12 NEFL (ENSODEG00000007183) #15 NEFM (ENSODEG00000008392) #16 ENSODEG00000007521 ADAM7 (ENSODEG00000007547) #17 ADAMDEC1 (ENSODEG00000008034) #18 ADAM28 (ENSODEG00000007875) #19 STC1 (ENSODEG00000007382) #20 NKX2-6 (ENSODEG00000007413) #21 NKX3-1 (ENSODEG00000007004) #22 SLC25A37 (ENSODEG00000007363) #23 ENTPD4 (ENSODEG00000009788) #24 ENSODEG00000009404 LOXL2 (ENSODEG00000006938) #25 R3HCC1 (ENSODEG00000007529) #26 ENSODEG00000019474 ENSODEG00000007294 #27 RHOBTB2 (ENSODEG00000007111) #28 ENSODEG00000008725 EGR3 (ENSODEG00000007442) BIN3 (ENSODEG00000006965) #31 CCAR2 (ENSODEG00000008466) #32 C8orf58 (ENSODEG00000006637) #33 PDLIM2 (ENSODEG00000006028) #34 SORBS3 (ENSODEG00000007179) #35 Guinea pig MODERN SPECIES 1 ADRA1A (ENSCPOG00000038399) DPYSL2 (ENSCPOG00000025679) BNIP3L (ENSCPOG00000034680) PPP2R2A (ENSCPOG00000026784) #7 EBF2 (ENSCPOG00000001463) #8 CDCA2 (ENSCPOG00000036890) #9 KCTD9 (ENSCPOG00000015540) #10 GNRH1 (ENSCPOG00000015538) #11 DOCK5 (ENSCPOG00000015533) #12 NEFL (ENSCPOG00000023838) #15 ENSCPOG00000027410 ADAM7 (ENSCPOG00000001538) #17 ADAMDEC1 (ENSCPOG00000038140) #18 ADAM28 (ENSCPOG00000009707) #19 STC1 (ENSCPOG00000034351) #20 NKX3-1 (ENSCPOG00000040229) #22 SLC25A37 (ENSCPOG00000035237) #23 ENTPD4 (ENSCPOG00000009705) #24 LOXL2 (ENSCPOG00000009701) #25 R3HCC1 (ENSCPOG00000009696) #26 CHMP7 (ENSCPOG00000002456) #27 RHOBTB2 (ENSCPOG00000039763) #28 PEBP4 (ENSCPOG00000015616) #29 EGR3 (ENSCPOG00000038322) BIN3 (ENSCPOG00000010994) #31 CCAR2 (ENSCPOG00000010985) #32 C8orf58 (ENSCPOG00000039428) #33 ENSCPOG00000020871 #34 SORBS3 (ENSCPOG00000001115) #35 PPP3CC (ENSCPOG00000001113) #36 SLC39A14 (ENSCPOG00000001112) #37 Naked mole-rat female MODERN SPECIES 25 ENSHGLG00000036572 ENSHGLG00000018824 #10 GNRH1 (ENSHGLG00000017902) #11 DOCK5 (ENSHGLG00000017514) #12 ENSHGLG00000050046 NEFL (ENSHGLG00000017653) #15 ENSHGLG00000019352 ENSHGLG00000036278 ADAM7 (ENSHGLG00000017673) #17 ADAMDEC1 (ENSHGLG00000011872) #18 ADAM28 (ENSHGLG00000018858) #19 ENSHGLG00000040240 STC1 (ENSHGLG00000040196) #20 NKX2-6 (ENSHGLG00000014624) #21 ENSHGLG00000044875 NKX3-1 (ENSHGLG00000049073) #22 SLC25A37 (ENSHGLG00000036264) #23 ENSHGLG00000032907 ENSHGLG00000010644 #24 LOXL2 (ENSHGLG00000012019) #25 R3HCC1 (ENSHGLG00000010517) #26 ENSHGLG00000009513 #27 ENSHGLG00000032756 RHOBTB2 (ENSHGLG00000016441) #28 ENSHGLG00000049596 PEBP4 (ENSHGLG00000042512) #29 EGR3 (ENSHGLG00000040205) BIN3 (ENSHGLG00000014664) #31 CCAR2 (ENSHGLG00000015483) #32 ENSHGLG00000010238 #33 PDLIM2 (ENSHGLG00000007806) #34