Murinae	ANCESTRAL SPECIES	16	ENSGT01030000234522.C.b.e.a.a.b #7	ENSGT00390000013415.a.b.p #8	ENSGT00950000182864.a.b.a #9	ENSGT00950000182859.A.a.a.b #10	ENSGT00940000154352.A #11	ENSGT00940000154314 #12	ENSGT00390000008225 #13	ENSGT00940000157734 #14	ENSGT00940000156208 #16	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a #26	ENSGT01100000263540.B.d #28	ENSGT00940000155874 #29	ENSGT00530000063711.a #30	ENSGT00720000108860 #31	ENSGT00940000162427.j #32	ENSGT00940000158918 #33	ENSGT00940000162387 #34	ENSGT00940000160355 #35	ENSGT00950000182882.B #36	ENSGT00530000063672.b #37	ENSGT00390000000531	ENSGT00940000160418	ENSGT00940000160558
Mus	ANCESTRAL SPECIES	8	ENSGT01030000234522.C.b.e.a.a.b #7	ENSGT00390000013415.a.b.p #8	ENSGT00950000182864.a.b.a #9	ENSGT00950000182859.A.a.a.b #10	ENSGT00940000154352.A #11	ENSGT00940000154314 #12	ENSGT00390000008225 #13	ENSGT00940000157734 #14	ENSGT00940000156208 #16	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a #26	ENSGT01100000263540.B.d #28	ENSGT00940000155874 #29	ENSGT00530000063711.a #30	ENSGT00720000108860 #31	ENSGT00940000162427.j #32	ENSGT00940000158918 #33	ENSGT00940000162387 #34	ENSGT00940000160355 #35	ENSGT00950000182882.B #36	ENSGT00530000063672.b #37	ENSGT00390000000531	ENSGT00940000160418	ENSGT00940000160558
Mus_A	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.e.a.a.b #7	ENSGT00390000013415.a.b.p #8	ENSGT00950000182864.a.b.a.y ##9	ENSGT00950000182859.A.a.a.b #10	ENSGT00940000154352.A #11	ENSGT00940000154314 #12	ENSGT00390000008225 #13	ENSGT00940000157734 #14	ENSGT00940000156208 #16	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a #26	ENSGT01100000263540.B.d #28	ENSGT00940000155874 #29	ENSGT00530000063711.a #30	ENSGT00720000108860 #31	ENSGT00940000162427.j #32	ENSGT00940000158918 #33	ENSGT00940000162387 #34	ENSGT00940000160355 #35	ENSGT00950000182882.B #36	ENSGT00530000063672.b #37	ENSGT00390000000531	ENSGT00940000160418	ENSGT00940000160558
Ryukyu mouse	MODERN SPECIES	5	Pnma2 (MGP_CAROLIEiJ_G0019444) #7	Bnip3l (MGP_CAROLIEiJ_G0019445) #8	MGP_CAROLIEiJ_G0019446 #9	Ebf2 (MGP_CAROLIEiJ_G0019447) #10	Cdca2 (MGP_CAROLIEiJ_G0019448) #11	Kctd9 (MGP_CAROLIEiJ_G0019449) #12	Gnrh1 (MGP_CAROLIEiJ_G0019450) #13	Dock5 (MGP_CAROLIEiJ_G0019451) #14	Nefm (MGP_CAROLIEiJ_G0019452) #15	Nefl (MGP_CAROLIEiJ_G0019453) #16	Adam7 (MGP_CAROLIEiJ_G0019454) #17	Adamdec1 (MGP_CAROLIEiJ_G0019455) #18	Adam28 (MGP_CAROLIEiJ_G0019456) #19	Stc1 (MGP_CAROLIEiJ_G0019457) #20	Nkx2-6 (MGP_CAROLIEiJ_G0019458) #21	Nkx3-1 (MGP_CAROLIEiJ_G0019459) #22	Slc25a37 (MGP_CAROLIEiJ_G0019460) #23	MGP_CAROLIEiJ_G0019461 #24	MGP_CAROLIEiJ_G0019462 #25	MGP_CAROLIEiJ_G0019463 #26	MGP_CAROLIEiJ_G0019464 #27	MGP_CAROLIEiJ_G0019465 #28	Loxl2 (MGP_CAROLIEiJ_G0019466) #29	R3hcc1 (MGP_CAROLIEiJ_G0019467) #30	Chmp7 (MGP_CAROLIEiJ_G0019468) #31	MGP_CAROLIEiJ_G0019469 #32	Rhobtb2 (MGP_CAROLIEiJ_G0019470) #33	Pebp4 (MGP_CAROLIEiJ_G0019471) #34	Egr3 (MGP_CAROLIEiJ_G0019472) #35	Bin3 (MGP_CAROLIEiJ_G0019473) #36	Ccar2 (MGP_CAROLIEiJ_G0019474) #37
Mus_B	ANCESTRAL SPECIES	11	ENSGT01030000234522.C.b.e.a.a.b #7	ENSGT00390000013415.a.b.p #8	ENSGT00950000182864.a.b.a.y ##9	ENSGT00950000182859.A.a.a.b #10	ENSGT00940000154352.A #11	ENSGT00940000154314 #12	ENSGT00390000008225 #13	ENSGT00940000157734 #14	ENSGT00940000156208 #16	ENSGT00940000161685.A.a #15	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a #26	ENSGT01100000263540.B.d #28	ENSGT00940000155874 #29	ENSGT00530000063711.a #30	ENSGT00720000108860 #31	ENSGT00940000162427.j #32	ENSGT00940000158918 #33	ENSGT00940000162387 #34	ENSGT00940000160355 #35	ENSGT00950000182882.B #36	ENSGT00530000063672.b #37	ENSGT00390000000531	ENSGT00940000160418	ENSGT00940000160558
Mus_C	ANCESTRAL SPECIES	20	ENSGT00390000013415.a.b.p #8	ENSGT00950000182864.a.b.a.y ##9	ENSGT00950000182859.A.a.a.b #10	ENSGT00940000154352.A #11	ENSGT00940000154314 #12	ENSGT00390000008225 #13	ENSGT00940000157734 #14	ENSGT00940000156208 #16	ENSGT00940000161685.A.a #15	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT00940000163436.n.a #26	ENSGT01100000263540.B.d #28	ENSGT00940000155874 #29	ENSGT00530000063711.a #30	ENSGT00720000108860 #31	ENSGT00940000162427.j #32	ENSGT00940000158918 #33	ENSGT00940000162387 #34	ENSGT00940000160355 #35	ENSGT00950000182882.B #36	ENSGT00530000063672.b #37	ENSGT00390000000531	ENSGT00940000160418	ENSGT00940000160558
Steppe mouse	MODERN SPECIES	3084				Cdca2 (ENSMSIG00000023962) #11	Kctd9 (ENSMSIG00000024015) #12	ENSMSIG00000024123 #13	Dock5 (ENSMSIG00000024135) #14	Nefl (ENSMSIG00000024282) #16	ENSMSIG00000024304	Adam7 (ENSMSIG00000024335) #17	Adamdec1 (ENSMSIG00000024360) #18	Adam28 (ENSMSIG00000024389) #19	Stc1 (ENSMSIG00000024577) #20	ENSMSIG00000024592	Nkx2-6 (ENSMSIG00000024600) #21	Nkx3-1 (ENSMSIG00000024609) #22	Slc25a37 (ENSMSIG00000024616) #23	ENSMSIG00000024627 #26	ENSMSIG00000024639 #28	Loxl2 (ENSMSIG00000024664) #29	R3hcc1 (ENSMSIG00000024698) #30	Chmp7 (ENSMSIG00000024716) #31	ENSMSIG00000024730	Tnfrsf10b (ENSMSIG00000024749) #32	Rhobtb2 (ENSMSIG00000024755) #33	ENSMSIG00000024803	ENSMSIG00000024806
spretus	MODERN SPECIES	5	Pnma2 (MGP_SPRETEiJ_G0020336) #7	Bnip3l (MGP_SPRETEiJ_G0020337) #8	Ppp2r2a (MGP_SPRETEiJ_G0020338) ##9	Ebf2 (MGP_SPRETEiJ_G0020339) #10	Cdca2 (MGP_SPRETEiJ_G0020340) #11	Kctd9 (MGP_SPRETEiJ_G0020341) #12	Gnrh1 (MGP_SPRETEiJ_G0020342) #13	Dock5 (MGP_SPRETEiJ_G0020343) #14	Nefm (MGP_SPRETEiJ_G0020344) #15	Nefl (MGP_SPRETEiJ_G0020345) #16	Adam7 (MGP_SPRETEiJ_G0020346) #17	Adamdec1 (MGP_SPRETEiJ_G0020347) #18	Adam28 (MGP_SPRETEiJ_G0020348) #19	Stc1 (MGP_SPRETEiJ_G0020349) #20	Nkx2-6 (MGP_SPRETEiJ_G0020350) #21	Nkx3-1 (MGP_SPRETEiJ_G0020351) #22	Slc25a37 (MGP_SPRETEiJ_G0020352) #23	MGP_SPRETEiJ_G0020354 #26	MGP_SPRETEiJ_G0020355 #26	MGP_SPRETEiJ_G0020356 #28	MGP_SPRETEiJ_G0020357 #28	Loxl2 (MGP_SPRETEiJ_G0020358) #29	R3hcc1 (MGP_SPRETEiJ_G0020359) #30	Chmp7 (MGP_SPRETEiJ_G0020360) #31	Tnfrsf10b (MGP_SPRETEiJ_G0020361) #32	Rhobtb2 (MGP_SPRETEiJ_G0020362) #33	Pebp4 (MGP_SPRETEiJ_G0020363) #34	Egr3 (MGP_SPRETEiJ_G0020364) #35	Bin3 (MGP_SPRETEiJ_G0020365) #36	Ccar2 (MGP_SPRETEiJ_G0020366) #37	9930012K11Rik (MGP_SPRETEiJ_G0020367)
Mouse	MODERN SPECIES	5	Pnma2 (ENSMUSG00000046204) #7	Bnip3l (ENSMUSG00000022051) #8	Ppp2r2a (ENSMUSG00000022052) ##9	Ebf2 (ENSMUSG00000022053) #10	Cdca2 (ENSMUSG00000048922) #11	Kctd9 (ENSMUSG00000034327) #12	Gnrh1 (ENSMUSG00000015812) #13	Dock5 (ENSMUSG00000044447) #14	Nefm (ENSMUSG00000022054) #15	Nefl (ENSMUSG00000022055) #16	Adam7 (ENSMUSG00000022056) #17	Adamdec1 (ENSMUSG00000022057) #18	Adam28 (ENSMUSG00000014725) #19	Stc1 (ENSMUSG00000014813) #20	Nkx2-6 (ENSMUSG00000044186) #21	Nkx3-1 (ENSMUSG00000022061) #22	Slc25a37 (ENSMUSG00000034248) #23	Synb (ENSMUSG00000047977) #26	Entpd4 (ENSMUSG00000095463) #28	Gm16867 (ENSMUSG00000093954)	Gm27179 (ENSMUSG00000098773) #26	Entpd4b (ENSMUSG00000022066) #28	Loxl2 (ENSMUSG00000034205) #29	R3hcc1 (ENSMUSG00000034194) #30	Chmp7 (ENSMUSG00000034190) #31	Tnfrsf10b (ENSMUSG00000022074) #32	Rhobtb2 (ENSMUSG00000022075) #33	Pebp4 (ENSMUSG00000022085) #34	Egr3 (ENSMUSG00000033730) #35	Bin3 (ENSMUSG00000022089) #36	Ccar2 (ENSMUSG00000033712) #37
Shrew mouse	MODERN SPECIES	21	MGP_PahariEiJ_G0030460	Bnip3l (MGP_PahariEiJ_G0030462) #8	Ppp2r2a (MGP_PahariEiJ_G0030463) #9	Ebf2 (MGP_PahariEiJ_G0030464) #10	Cdca2 (MGP_PahariEiJ_G0030465) #11	Kctd9 (MGP_PahariEiJ_G0030466) #12	Gnrh1 (MGP_PahariEiJ_G0030467) #13	Dock5 (MGP_PahariEiJ_G0030468) #14	Nefm (MGP_PahariEiJ_G0030469) #15	Nefl (MGP_PahariEiJ_G0030470) #16	Adam7 (MGP_PahariEiJ_G0030471) #17	Adamdec1 (MGP_PahariEiJ_G0030472) #18	Adam28 (MGP_PahariEiJ_G0030473) #19	Stc1 (MGP_PahariEiJ_G0030474) #20	MGP_PahariEiJ_G0030475 #21	Nkx3-1 (MGP_PahariEiJ_G0030476) #22	Slc25a37 (MGP_PahariEiJ_G0030477) #23	MGP_PahariEiJ_G0030478	MGP_PahariEiJ_G0030479 #26	MGP_PahariEiJ_G0030480 #26	MGP_PahariEiJ_G0030481 #28	MGP_PahariEiJ_G0030482 #28	Loxl2 (MGP_PahariEiJ_G0030483) #29	R3hcc1 (MGP_PahariEiJ_G0030484) #30	Chmp7 (MGP_PahariEiJ_G0030485) #31	MGP_PahariEiJ_G0030486 #32	Rhobtb2 (MGP_PahariEiJ_G0030487) #33	Pebp4 (MGP_PahariEiJ_G0030488) #34	Egr3 (MGP_PahariEiJ_G0030489) #35	Bin3 (MGP_PahariEiJ_G0030490) #36	Ccar2 (MGP_PahariEiJ_G0030491) #37
Rat	MODERN SPECIES	6	Kctd9 (ENSRNOG00000012951) #12	Gnrh1 (ENSRNOG00000013433)	Dock5 (ENSRNOG00000024703) #14	LOC120097172 (ENSRNOG00000031532)	Nefl (ENSRNOG00000013658) #16	Nefm (ENSRNOG00000013916)	Adam7 (ENSRNOG00000014054) #17	Adamdec1 (ENSRNOG00000030724) #18	Adam28 (ENSRNOG00000014518) #19	ENSRNOG00000063586 #19	AABR07018269.1 (ENSRNOG00000031720)	ENSRNOG00000063939	ENSRNOG00000067366	Stc1 (ENSRNOG00000015075) #20	Nkx2-6 (ENSRNOG00000021910) #21	Nkx3-1 (ENSRNOG00000015477) #22	Slc25a37 (ENSRNOG00000015495) #23	Synb (ENSRNOG00000021823) #26	Entpd4 (ENSRNOG00000016321) #28	Loxl2 (ENSRNOG00000016758) #29	R3hcc1 (ENSRNOG00000016777) #30	Chmp7 (ENSRNOG00000016939) #31	Tnfrsf10b (ENSRNOG00000038483) #32	Rhobtb2 (ENSRNOG00000017373) #33	Pebp4 (ENSRNOG00000026247) #34	Egr3 (ENSRNOG00000017828) #35	Bin3 (ENSRNOG00000018023) #36	Ccar2 (ENSRNOG00000018295) #37	C15h8orf58 (ENSRNOG00000008351)	Pdlim2 (ENSRNOG00000008543)	Sorbs3 (ENSRNOG00000008829)