Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957 #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00940000154115.c.a
Suina	ANCESTRAL SPECIES	42	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957 #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00940000154115.c.a
Pig	MODERN SPECIES	5	EBF2 (ENSSSCG00000009655) #7	ENSSSCG00000042774 #8	CDCA2 (ENSSSCG00000009653) #9	KCTD9 (ENSSSCG00000009652) #10	GNRH1 (ENSSSCG00000009651) #11	DOCK5 (ENSSSCG00000009650) #12	NEFL (ENSSSCG00000009649) #13	ENSSSCG00000009648 #14	ENSSSCG00000060373 #15	ENSSSCG00000057307 #16	ADAM7 (ENSSSCG00000009646) #17	ADAMDEC1 (ENSSSCG00000009645) #18	ADAM28 (ENSSSCG00000009644) #19	STC1 (ENSSSCG00000009642) #20	NKX2-6 (ENSSSCG00000028064) #21	NKX3-1 (ENSSSCG00000031924) #22	ENSSSCG00000033037 #23	ENTPD4 (ENSSSCG00000031871) #24	LOXL2 (ENSSSCG00000033608) #25	ENSSSCG00000039915 #26	CHMP7 (ENSSSCG00000033113) #27	ENSSSCG00000058071 #28	ENSSSCG00000009633 #29	RHOBTB2 (ENSSSCG00000009638) #30	PEBP4 (ENSSSCG00000009631) #31	EGR3 (ENSSSCG00000009630) #32	ENSSSCG00000061246 #33	BIN3 (ENSSSCG00000009629) #34	CCAR2 (ENSSSCG00000009628) #35	C8orf58 (ENSSSCG00000009627) #36	PDLIM2 (ENSSSCG00000009625) #37
Chacoan peccary	MODERN SPECIES	813	PNMA2 (ENSCWAG00000012323)	BNIP3L (ENSCWAG00000012345)	PPP2R2A (ENSCWAG00000012404)	EBF2 (ENSCWAG00000012599) #7	CDCA2 (ENSCWAG00000012969) #9	KCTD9 (ENSCWAG00000013249) #10	GNRH1 (ENSCWAG00000013307) #11	DOCK5 (ENSCWAG00000013368) #12	NEFL (ENSCWAG00000013873) #13	ENSCWAG00000013920 #14	ADAM7 (ENSCWAG00000013998) #17	ADAMDEC1 (ENSCWAG00000014486) #18	ADAM28 (ENSCWAG00000014725) #19	STC1 (ENSCWAG00000014909) #20	NKX2-6 (ENSCWAG00000014986) #21	NKX3-1 (ENSCWAG00000015012) #22	SLC25A37 (ENSCWAG00000015044) #23	ENTPD4 (ENSCWAG00000015072) #24	LOXL2 (ENSCWAG00000015127) #25	R3HCC1 (ENSCWAG00000015202) #26	CHMP7 (ENSCWAG00000015296) #27	RHOBTB2 (ENSCWAG00000015338) #30	PEBP4 (ENSCWAG00000015546) #31	EGR3 (ENSCWAG00000015603) #32	BIN3 (ENSCWAG00000015644) #34	CCAR2 (ENSCWAG00000015750) #35	C8orf58 (ENSCWAG00000015807) #36	PDLIM2 (ENSCWAG00000015849) #37	SORBS3 (ENSCWAG00000015893)	PPP3CC (ENSCWAG00000016041)	SLC39A14 (ENSCWAG00000016115)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.f #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.f #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558
Cetacea	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.f #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558
Odontoceti	ANCESTRAL SPECIES	8	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.e.b #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558
Sperm whale	MODERN SPECIES	20	PPP2R2A (ENSPCTG00005001540)	EBF2 (ENSPCTG00005001486) #7	ENSPCTG00005001468	CDCA2 (ENSPCTG00005001413) #9	KCTD9 (ENSPCTG00005001337) #10	GNRH1 (ENSPCTG00005001298) #11	DOCK5 (ENSPCTG00005001083) #12	NEFL (ENSPCTG00005001011) #13	NEFM (ENSPCTG00005000983)	ENSPCTG00005000957	ADAM7 (ENSPCTG00005000905) #17	ADAMDEC1 (ENSPCTG00005000843) #18	ADAM28 (ENSPCTG00005000741) #19	STC1 (ENSPCTG00005000557) #20	NKX2-6 (ENSPCTG00005000444) #21	NKX3-1 (ENSPCTG00005015538) #22	ENSPCTG00005015478	SLC25A37 (ENSPCTG00005015433) #23	ENSPCTG00005015370	ENSPCTG00005015319	ENTPD4 (ENSPCTG00005015209) #24	LOXL2 (ENSPCTG00005015101) #25	BIN3 (ENSPCTG00005014854) #34	CCAR2 (ENSPCTG00005014790) #35	ENSPCTG00005014687 #30	ENSPCTG00005014672 #28	PPP3CC (ENSPCTG00005014485)	SLC39A14 (ENSPCTG00005014396)	PIWIL2 (ENSPCTG00005013801)	POLR3D (ENSPCTG00005013730)	PHYHIP (ENSPCTG00005013651)
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.e.b #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558
Dolphin	MODERN SPECIES	4932															NKX2-6 (ENSTTRG00000012331) #21	ENSTTRG00000012332 #22
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.d	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.e.b #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558
Vaquita	MODERN SPECIES	17	ENSPSNG00000010536	EBF2 (ENSPSNG00000010256) #7	ENSPSNG00000010228	ENSPSNG00000010183	CDCA2 (ENSPSNG00000009875) #9	KCTD9 (ENSPSNG00000009803) #10	GNRH1 (ENSPSNG00000004028) #11	ENSPSNG00000003996	ENSPSNG00000003965	NEFL (ENSPSNG00000003946) #13	ENSPSNG00000003914 #14	ADAMDEC1 (ENSPSNG00000003873) #18	ADAM28 (ENSPSNG00000003790) #19	STC1 (ENSPSNG00000003726) #20	NKX2-6 (ENSPSNG00000003713) #21	NKX3-1 (ENSPSNG00000003693) #22	ENSPSNG00000003682	SLC25A37 (ENSPSNG00000003670) #23	ENTPD4 (ENSPSNG00000003639) #24	LOXL2 (ENSPSNG00000003593) #25	R3HCC1 (ENSPSNG00000003548) #26	CHMP7 (ENSPSNG00000003508) #27	ENSPSNG00000003483 #28	ENSPSNG00000003447 #28	ENSPSNG00000003423	RHOBTB2 (ENSPSNG00000003361) #30	PEBP4 (ENSPSNG00000003231) #31	EGR3 (ENSPSNG00000003185) #32	BIN3 (ENSPSNG00000003145) #34	CCAR2 (ENSPSNG00000003064) #35	C8orf58 (ENSPSNG00000003015) #36
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.d	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01010000228881	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.e.a #28	ENSGT00940000162957.e.b #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37
Beluga whale	MODERN SPECIES	4	BNIP3L (ENSDLEG00000001250)	PPP2R2A (ENSDLEG00000001272)	ENSDLEG00000001289	EBF2 (ENSDLEG00000001316) #7	ENSDLEG00000001380	CDCA2 (ENSDLEG00000001385) #9	KCTD9 (ENSDLEG00000001415) #10	GNRH1 (ENSDLEG00000001435) #11	DOCK5 (ENSDLEG00000002343) #12	ENSDLEG00000006462	NEFL (ENSDLEG00000006467) #13	NEFM (ENSDLEG00000006476)	ADAM28 (ENSDLEG00000006489) #19	STC1 (ENSDLEG00000006517) #20	ENSDLEG00000006522 #21	NKX3-1 (ENSDLEG00000006531) #22	SLC25A37 (ENSDLEG00000006540) #23	ENSDLEG00000006543	ENTPD4 (ENSDLEG00000006555) #24	LOXL2 (ENSDLEG00000006576) #25	R3HCC1 (ENSDLEG00000006591) #26	CHMP7 (ENSDLEG00000006605) #27	ENSDLEG00000006614 #28	ENSDLEG00000006626 #28	ZNF484 (ENSDLEG00000006635)	ENSDLEG00000006641	IARS (ENSDLEG00000006757)	NOL8 (ENSDLEG00000007445)	CENPP (ENSDLEG00000007526)	OGN (ENSDLEG00000007549)	OMD (ENSDLEG00000007553)
Blue whale	MODERN SPECIES	17	ENSBMSG00010001374	PPP2R2A (ENSBMSG00010001403)	EBF2 (ENSBMSG00010001470) #7	CDCA2 (ENSBMSG00010001504) #9	KCTD9 (ENSBMSG00010001525) #10	GNRH1 (ENSBMSG00010001589) #11	DOCK5 (ENSBMSG00010001626) #12	NEFL (ENSBMSG00010001677) #13	NEFM (ENSBMSG00010001692)	ENSBMSG00010001706	ENSBMSG00010001750 #17	ADAMDEC1 (ENSBMSG00010001768) #18	ENSBMSG00010001817 #19	STC1 (ENSBMSG00010001852) #20	NKX2-6 (ENSBMSG00010001859) #21	NKX3-1 (ENSBMSG00010001867) #22	SLC25A37 (ENSBMSG00010001881) #23	ENSBMSG00010001888	ENSBMSG00010001897	ENTPD4 (ENSBMSG00010001918) #24	LOXL2 (ENSBMSG00010001934) #25	ENSBMSG00010001963 #26	CHMP7 (ENSBMSG00010001987) #27	ENSBMSG00010002015 #28	RHOBTB2 (ENSBMSG00010002063) #30	PEBP4 (ENSBMSG00010002119) #31	EGR3 (ENSBMSG00010002174) #32	BIN3 (ENSBMSG00010002206) #34	CCAR2 (ENSBMSG00010002236) #35	C8orf58 (ENSBMSG00010002259) #36	PDLIM2 (ENSBMSG00010002288) #37
Pecora	ANCESTRAL SPECIES	36	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00940000154115.c.a	ENSGT00960000190195
Yarkand deer	MODERN SPECIES	7	ENSCHYG00000026854	ENSCHYG00000026841	EBF2 (ENSCHYG00000026813) #7	CDCA2 (ENSCHYG00000026788) #9	KCTD9 (ENSCHYG00000026770) #10	GNRH1 (ENSCHYG00000026755) #11	DOCK5 (ENSCHYG00000026683) #12	NEFL (ENSCHYG00000026647) #13	NEFM (ENSCHYG00000026636)	ADAM7 (ENSCHYG00000026508) #17	ADAMDEC1 (ENSCHYG00000026439) #18	ADAM28 (ENSCHYG00000025837) #19	ENSCHYG00000025762	STC1 (ENSCHYG00000025743) #20	NKX2-6 (ENSCHYG00000025734) #21	NKX3-1 (ENSCHYG00000025709) #22	SLC25A37 (ENSCHYG00000025677) #23	ENTPD4 (ENSCHYG00000025626) #24	LOXL2 (ENSCHYG00000025533) #25	R3HCC1 (ENSCHYG00000025446) #26	CHMP7 (ENSCHYG00000025352) #27	ENSCHYG00000025211	RHOBTB2 (ENSCHYG00000025115) #30	PEBP4 (ENSCHYG00000025076) #31	EGR3 (ENSCHYG00000025046) #32	BIN3 (ENSCHYG00000024970) #34	CCAR2 (ENSCHYG00000024837) #35	C8orf58 (ENSCHYG00000024797) #36	PDLIM2 (ENSCHYG00000024701) #37	SORBS3 (ENSCHYG00000024528)	PPP3CC (ENSCHYG00000023801)
Percora_a	ANCESTRAL SPECIES	24	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162635.mb.b	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00970000197193
Bovidae	ANCESTRAL SPECIES	14	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162635.mb.b	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00970000197193
Caprinae	ANCESTRAL SPECIES	14	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860.n #27	ENSGT00940000162635.mb.b	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00940000154115.c.a
Goat	MODERN SPECIES	27	ENSCHIG00000024818	PPP2R2A (ENSCHIG00000007473)	EBF2 (ENSCHIG00000023729) #7	CDCA2 (ENSCHIG00000018580) #9	KCTD9 (ENSCHIG00000015791) #10	GNRH1 (ENSCHIG00000016406) #11	DOCK5 (ENSCHIG00000001085) #12	NEFL (ENSCHIG00000011951) #13	NEFM (ENSCHIG00000019945)	ADAM7 (ENSCHIG00000015652) #17	ADAMDEC1 (ENSCHIG00000015701) #18	ADAM28 (ENSCHIG00000024308) #19	ENSCHIG00000012581	STC1 (ENSCHIG00000010708) #20	NKX2-6 (ENSCHIG00000023290) #21	NKX3-1 (ENSCHIG00000010463) #22	ENSCHIG00000009620	ENSCHIG00000010457	SLC25A37 (ENSCHIG00000009638) #23	ENTPD4 (ENSCHIG00000017608) #24	LOXL2 (ENSCHIG00000015358) #25	R3HCC1 (ENSCHIG00000009107) #26	ENSCHIG00000024704 #27	ENSCHIG00000021504	ENSCHIG00000026442 #28	ENSCHIG00000015870	RHOBTB2 (ENSCHIG00000010021) #30	PEBP4 (ENSCHIG00000018763) #31	EGR3 (ENSCHIG00000022674) #32	BIN3 (ENSCHIG00000020329) #34	CCAR2 (ENSCHIG00000007510) #35
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020013277	DPYSL2 (ENSOARG00020013413)	PNMA2 (ENSOARG00020013810)	ENSOARG00020013834	PPP2R2A (ENSOARG00020013913)	EBF2 (ENSOARG00020014139) #7	CDCA2 (ENSOARG00020014388) #9	KCTD9 (ENSOARG00020014450) #10	DOCK5 (ENSOARG00020014672) #12	GNRH1 (ENSOARG00020017575) #11	NEFL (ENSOARG00020017673) #13	NEFM (ENSOARG00020017740)	ADAM7 (ENSOARG00020017810) #17	STC1 (ENSOARG00020019387) #20	NKX2-6 (ENSOARG00020019459) #21	NKX3-1 (ENSOARG00020019488) #22	SLC25A37 (ENSOARG00020019551) #23	ENTPD4 (ENSOARG00020019615) #24	ENSOARG00020019697 #27	ENSOARG00020019730	RHOBTB2 (ENSOARG00020019759) #30	PEBP4 (ENSOARG00020019900) #31	EGR3 (ENSOARG00020019990) #32	BIN3 (ENSOARG00020020084) #34	CCAR2 (ENSOARG00020020234) #35	C8orf58 (ENSOARG00020020420) #36	PDLIM2 (ENSOARG00020020511) #37	SORBS3 (ENSOARG00020020583)	PPP3CC (ENSOARG00020020737)	ENSOARG00020020965	SLC39A14 (ENSOARG00020020996)
Bovinae	ANCESTRAL SPECIES	14	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162635.mb.b	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT00940000160558	ENSGT00970000197193
Bos	ANCESTRAL SPECIES	10	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162635.mb.b.a	ENSGT00940000158918.i.b #30	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b
Bos_b	ANCESTRAL SPECIES	3	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00950000183031.B.e.b.a.a.a	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000158918.j #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b	ENSGT00940000160558	ENSGT00970000197193
Cow	MODERN SPECIES	27	EBF2 (ENSBTAG00000040390) #7	CDCA2 (ENSBTAG00000002756) #9	KCTD9 (ENSBTAG00000012382) #10	GNRH1 (ENSBTAG00000000164) #11	DOCK5 (ENSBTAG00000015513) #12	NEFL (ENSBTAG00000021949) #13	NEFM (ENSBTAG00000039530) #14	ADAM7 (ENSBTAG00000039171) #17	ADAMDEC1 (ENSBTAG00000001125) #18	ADAM28 (ENSBTAG00000037929) #19	ENSBTAG00000038064	ENSBTAG00000048755	STC1 (ENSBTAG00000001687) #20	ENSBTAG00000051369	NKX2-6 (ENSBTAG00000014008) #21	NKX3-1 (ENSBTAG00000001221) #22	SLC25A37 (ENSBTAG00000019099) #23	ENTPD4 (ENSBTAG00000006768) #24	LOXL2 (ENSBTAG00000006214) #25	R3HCC1 (ENSBTAG00000025830) #26	CHMP7 (ENSBTAG00000013528) #27	RHOBTB2 (ENSBTAG00000035958) #30	ENSBTAG00000050001	PEBP4 (ENSBTAG00000015416) #31	EGR3 (ENSBTAG00000019293) #32	BIN3 (ENSBTAG00000005470) #34	CCAR2 (ENSBTAG00000005469) #35	C8H8orf58 (ENSBTAG00000005466) #36	PDLIM2 (ENSBTAG00000007369) #37	ENSBTAG00000054318	SORBS3 (ENSBTAG00000014401)
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005023958	PPP2R2A (ENSBIXG00005024066)	EBF2 (ENSBIXG00005024188) #7	CDCA2 (ENSBIXG00005024231) #9	KCTD9 (ENSBIXG00005004143) #10	GNRH1 (ENSBIXG00005024264) #11	DOCK5 (ENSBIXG00005024516) #12	NEFL (ENSBIXG00005024596) #13	NEFM (ENSBIXG00005002572)	ADAM7 (ENSBIXG00005024699) #17	ENSBIXG00005025151 #19	ENSBIXG00005025234	ENSBIXG00005004295	STC1 (ENSBIXG00005025303) #20	NKX2-6 (ENSBIXG00005025314) #21	NKX3-1 (ENSBIXG00005025337) #22	SLC25A37 (ENSBIXG00005025367) #23	LOXL2 (ENSBIXG00005025479) #25	R3HCC1 (ENSBIXG00005025548) #26	CHMP7 (ENSBIXG00005025583) #27	ENSBIXG00005025600	ENSBIXG00005025709	RHOBTB2 (ENSBIXG00005026098) #30	ENSBIXG00005026205 #31	EGR3 (ENSBIXG00005026284) #32	BIN3 (ENSBIXG00005026346) #34	CCAR2 (ENSBIXG00005026417) #35	C8orf58 (ENSBIXG00005026447) #36	PDLIM2 (ENSBIXG00005026481) #37	ENSBIXG00005026487	SORBS3 (ENSBIXG00005007094)
Bos_a	ANCESTRAL SPECIES	20	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00990000214190	ENSGT00940000156208 #13	ENSGT00940000154418.a.b	ENSGT00940000161406 #17	ENSGT00900000141143 #18	ENSGT00940000156716 #19	ENSGT00940000154172.`b	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162635.mb.b.a	ENSGT00940000158918.i.b #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418 #37	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.a.b.a.b	ENSGT00940000160558
Domestic yak	MODERN SPECIES	26	PPP2R2A (ENSBGRG00000000395)	EBF2 (ENSBGRG00000017109) #7	CDCA2 (ENSBGRG00000016906) #9	KCTD9 (ENSBGRG00000016782) #10	GNRH1 (ENSBGRG00000016731) #11	DOCK5 (ENSBGRG00000015972) #12	ENSBGRG00000015920	NEFL (ENSBGRG00000015850) #13	NEFM (ENSBGRG00000015744)	ENSBGRG00000015724	ADAM7 (ENSBGRG00000014923) #17	ENSBGRG00000014430 #18	ENSBGRG00000014380	STC1 (ENSBGRG00000014320) #20	NKX2-6 (ENSBGRG00000014251) #21	NKX3-1 (ENSBGRG00000014189) #22	SLC25A37 (ENSBGRG00000014111) #23	ENTPD4 (ENSBGRG00000013839) #24	LOXL2 (ENSBGRG00000013709) #25	R3HCC1 (ENSBGRG00000013568) #26	CHMP7 (ENSBGRG00000013440) #27	ENSBGRG00000013324	ENSBGRG00000013289 #30	PEBP4 (ENSBGRG00000013188) #31	EGR3 (ENSBGRG00000013085) #32	BIN3 (ENSBGRG00000012804) #34	CCAR2 (ENSBGRG00000012594) #35	C8orf58 (ENSBGRG00000012373) #36	PDLIM2 (ENSBGRG00000012168) #37	ENSBGRG00000012132	SORBS3 (ENSBGRG00000011774)
Wild yak	MODERN SPECIES	1056										ADAM7 (ENSBMUG00000005939) #17	ADAMDEC1 (ENSBMUG00000006004) #18	ADAM28 (ENSBMUG00000006021) #19	ENSBMUG00000006030	STC1 (ENSBMUG00000006043) #20	NKX2-6 (ENSBMUG00000006056) #21	NKX3-1 (ENSBMUG00000006065) #22	SLC25A37 (ENSBMUG00000006085) #23
Siberian musk deer	MODERN SPECIES	327	ENSMMSG00000005972	EBF2 (ENSMMSG00000005908) #7	CDCA2 (ENSMMSG00000005842) #9	KCTD9 (ENSMMSG00000005761) #10	GNRH1 (ENSMMSG00000005726) #11	DOCK5 (ENSMMSG00000005425) #12	NEFL (ENSMMSG00000005342) #13	NEFM (ENSMMSG00000005289)	ADAM7 (ENSMMSG00000004688) #17	ADAMDEC1 (ENSMMSG00000004507) #18	ADAM28 (ENSMMSG00000004400) #19	ENSMMSG00000004334	ENSMMSG00000004320	STC1 (ENSMMSG00000013160) #20	NKX2-6 (ENSMMSG00000013148) #21	NKX3-1 (ENSMMSG00000013132) #22	SLC25A37 (ENSMMSG00000013114) #23	ENTPD4 (ENSMMSG00000013068) #24	LOXL2 (ENSMMSG00000013026) #25	R3HCC1 (ENSMMSG00000012970) #26	CHMP7 (ENSMMSG00000012943) #27	ENSMMSG00000012887	RHOBTB2 (ENSMMSG00000012820) #30	PEBP4 (ENSMMSG00000012800) #31	EGR3 (ENSMMSG00000012782) #32	BIN3 (ENSMMSG00000012720) #34	CCAR2 (ENSMMSG00000012636) #35	C8orf58 (ENSMMSG00000012599) #36	PDLIM2 (ENSMMSG00000012537) #37	SORBS3 (ENSMMSG00000012318)	ENSMMSG00000012271
Camelidae	ANCESTRAL SPECIES	47	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a	ENSGT00950000182859.A.a.a.b #7	ENSGT00940000154352.A #9	ENSGT00940000154314 #10	ENSGT00390000008225 #11	ENSGT00940000157734 #12	ENSGT00940000156208 #13	ENSGT00940000161685.A.a #14	ENSGT00940000156716 #19	ENSGT00390000005989.b #20	ENSGT00940000162737 #21	ENSGT00940000160930 #22	ENSGT00940000158607 #23	ENSGT01100000263540.B.d #24	ENSGT00940000155874 #25	ENSGT00530000063711.a #26	ENSGT00720000108860 #27	ENSGT00940000162957.f #28	ENSGT00940000158918 #30	ENSGT00940000162387 #31	ENSGT00940000160355 #32	ENSGT00950000182882.B #34	ENSGT00530000063672.b #35	ENSGT00390000000531 #36	ENSGT00940000160418.r #37	ENSGT00940000160558	ENSGT00940000154115.c.a
Arabian camel	MODERN SPECIES	24	PNMA2 (ENSCDRG00005018959)	BNIP3L (ENSCDRG00005018890)	PPP2R2A (ENSCDRG00005018721)	ENSCDRG00005018693	EBF2 (ENSCDRG00005018634) #7	CDCA2 (ENSCDRG00005018503) #9	KCTD9 (ENSCDRG00005018455) #10	GNRH1 (ENSCDRG00005018431) #11	DOCK5 (ENSCDRG00005018165) #12	NEFL (ENSCDRG00005018138) #13	ENSCDRG00005018075 #14	ADAM7 (ENSCDRG00005017257) #17	ADAM28 (ENSCDRG00005016471) #19	STC1 (ENSCDRG00005016415) #20	ENSCDRG00005016389 #21	NKX3-1 (ENSCDRG00005016364) #22	SLC25A37 (ENSCDRG00005016317) #23	ENTPD4 (ENSCDRG00005016214) #24	LOXL2 (ENSCDRG00005016177) #25	R3HCC1 (ENSCDRG00005016059) #26	ENSCDRG00005016025	CHMP7 (ENSCDRG00005015938) #27	ENSCDRG00005015918	ENSCDRG00005015904 #28	ENSCDRG00005015882 #28	ENSCDRG00005015821 #28	RHOBTB2 (ENSCDRG00005015666) #30	PEBP4 (ENSCDRG00005015556) #31	EGR3 (ENSCDRG00005015507) #32	BIN3 (ENSCDRG00005015398) #34	CCAR2 (ENSCDRG00005015276) #35
Alpaca	MODERN SPECIES	2636																NKX3-1 (ENSVPAG00000004503) #22	SLC25A37 (ENSVPAG00000004501) #23	ENSVPAG00000004500 #24