Pecora	ANCESTRAL SPECIES	30	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #11	ENSGT01000000214430.a.a.a.b ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a ##34	ENSGT01000000214430.a.a.a.a.b.h #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.b #13	ENSGT01000000214430.a.a.a.a.a.b #14	ENSGT00940000154359.e #7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B #19	ENSGT00940000163078 #20	ENSGT00940000162423 #21	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00940000161278 #29	ENSGT00390000007109 #28	ENSGT00940000158840 #31	ENSGT00390000010786	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #32	ENSGT01000000214430.b #34	ENSGT00390000005644 #35	ENSGT00940000156665 #36	ENSGT00950000185419
Percora_a	ANCESTRAL SPECIES	24	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #11	ENSGT01000000214430.a.a.a.b.b ##34	ENSGT01100000263642 #12	ENSGT01000000214430.a.a.a.b.a ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a ##34	ENSGT01000000214430.a.a.a.a.a.b #14	ENSGT00940000154359.e #7	ENSGT01000000214430.a.a.a.a.b.h #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.b #13	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B #19	ENSGT00940000163078 #20	ENSGT00940000162423 #21	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000266201	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00940000161278 #29	ENSGT00390000007109 #28	ENSGT00940000158840 #31	ENSGT00390000010786	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #32	ENSGT01000000214430.b #34	ENSGT00390000005644 #35	ENSGT00940000156665 #36
Bovidae	ANCESTRAL SPECIES	14	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT00990000211532	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #11	ENSGT01000000214430.a.a.a.b.b ##34	ENSGT01100000263642 #12	ENSGT01000000214430.a.a.a.b.a ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a ##34	ENSGT01000000214430.a.a.a.a.a.b #14	ENSGT00940000154359.e #7	ENSGT00940000165099	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000266201	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00940000161278 #29	ENSGT00390000007109 #28	ENSGT00940000158840 #31	ENSGT00390000010786	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #32	ENSGT01000000214430.b #34	ENSGT00390000005644 #35	ENSGT00940000156665 #36
Caprinae	ANCESTRAL SPECIES	43	ENSGT01100000263642.c.b.a.b ##12	ENSGT01000000214430.a.b.n.b ##34	ENSGT01000000214430.a.a.a.b.a.b ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a.b ##34	ENSGT01000000214430.a.a.a.a.a.b.bb.a #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.b.b #10	ENSGT01000000214430.a.a.a.a.a.b.bb.b.b ##34	ENSGT00940000154359.e #7	ENSGT01000000214430.a.a.a.a.b.h #8	ENSGT01000000214430.a.a.a.a.a.b.bb.b.a.b #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B #19	ENSGT00940000163078 #20	ENSGT00940000162423 #21	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000266201	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00390000007109 #28	ENSGT00940000161278 #29	ENSGT00940000158840 #31	ENSGT00390000010786	ENSGT01000000214430.b #34	ENSGT01050000244898.a.a.a.b #32	ENSGT00390000005644 #35	ENSGT00940000156665 #36	ENSGT00940000157772
Rambouillet Sheep	MODERN SPECIES	11	KLHL9 (ENSOARG00020007161) #7	IFND (ENSOARG00020007178) #8	ENSOARG00020007193 #9	ENSOARG00020007216 #10	ENSOARG00020007263 #11	ENSOARG00020007314 #12	ENSOARG00020007372 #13	ENSOARG00020007392 #14	IFNT6 (ENSOARG00020007406) #15	TP-1P8 (ENSOARG00020007442) #16	ENSOARG00020007481 #17	IFNE (ENSOARG00020007524) #18	ENSOARG00020007545 #19	CDKN2A (ENSOARG00020007568) #20	CDKN2B (ENSOARG00020007616) #21	DMRTA1 (ENSOARG00020007643) #22	ELAVL2 (ENSOARG00020007662) #23	ENSOARG00020007723 #24	IZUMO3 (ENSOARG00020007782) #25	TUSC1 (ENSOARG00020007925) #26	PLAA (ENSOARG00020008093) #27	IFT74 (ENSOARG00020008192) #28	LRRC19 (ENSOARG00020008306) #29	ENSOARG00020008357 #30	TEK (ENSOARG00020008433) #31	MOB3B (ENSOARG00020008934) #32	ENSOARG00020008983 #33	IFNK (ENSOARG00020009030) #34	C9orf72 (ENSOARG00020009060) #35	LINGO2 (ENSOARG00020009133) #36	ENSOARG00020009145 #37
Goat	MODERN SPECIES	27	ENSCHIG00000012674 ##34	ENSCHIG00000008290 ##34	ENSCHIG00000008596 #12	ENSCHIG00000009514 ##34	ENSCHIG00000001968 #13	ENSCHIG00000005142 #13	ENSCHIG00000025046 #8	ENSCHIG00000009474 #14	ENSCHIG00000019572 #17	ENSCHIG00000011025 #17	IFNE (ENSCHIG00000008081) #18	MTAP (ENSCHIG00000014710) #19	ENSCHIG00000018121	CDKN2A (ENSCHIG00000025939) #20	CDKN2B (ENSCHIG00000025845) #21	DMRTA1 (ENSCHIG00000023134) #22	ENSCHIG00000018988	ELAVL2 (ENSCHIG00000025894) #23	ENSCHIG00000006162	IZUMO3 (ENSCHIG00000018315) #25	ENSCHIG00000003269	TUSC1 (ENSCHIG00000012670) #26	ENSCHIG00000026276	CAAP1 (ENSCHIG00000017091)	PLAA (ENSCHIG00000014920) #27	LRRC19 (ENSCHIG00000024759) #29	IFT74 (ENSCHIG00000009508) #28	TEK (ENSCHIG00000013962) #31	EQTN (ENSCHIG00000008768)	IFNK (ENSCHIG00000016395) #34	MOB3B (ENSCHIG00000011582) #32
Bovinae	ANCESTRAL SPECIES	39	ENSGT01000000214430.a.a.a.a.a.a.b.l.a.b ##34	ENSGT01000000214430.a.a.a.a.b.g.b ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.a.a ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.b.ab #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b #17	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b #17	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B #19	ENSGT00940000163078 #20	ENSGT00940000162423 #21	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00940000161278 #29	ENSGT00390000007109 #28	ENSGT00940000158840 #31	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #32	ENSGT01000000214430.b #34	ENSGT00390000005644 #35	ENSGT00940000156665 #36	ENSGT00950000185419	ENSGT00940000158555.i.b
Bos	ANCESTRAL SPECIES	10	ENSGT01000000214430.a.a.a.a.b.g.b ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.b.ab #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b #17	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b #17	ENSGT00950000182991.B.z #19	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B.y #19	ENSGT00940000165099	ENSGT00390000007552.f	ENSGT00940000163078 #20	ENSGT00940000162423 #21	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00550000074873.bb.b	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00940000161278 #29	ENSGT00390000007109 #28	ENSGT00940000158840 #31	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #32	ENSGT01000000214430.b #34	ENSGT00390000005644 #35	ENSGT00940000156665 #36	ENSGT00950000185419
Bos_a	ANCESTRAL SPECIES	50							ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B.y #19	ENSGT00940000162423 #21	ENSGT00940000154902.bb.a	ENSGT00940000154902.bb.b	ENSGT00390000007552.f	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00550000074873.bb.b	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00390000007109 #28	ENSGT00940000161278 #29	ENSGT00940000158840 #31	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #32	ENSGT01000000214430.b #34	ENSGT00390000005644 #35	ENSGT00940000156665 #36	ENSGT00950000185419
Domestic yak	MODERN SPECIES	26	ENSBGRG00000002413 #14	KLHL9 (ENSBGRG00000002421) #7	ENSBGRG00000002434 #14	ENSBGRG00000002439 ##34	ENSBGRG00000002442 ##34	ENSBGRG00000002447 ##34	ENSBGRG00000002456 #14	ENSBGRG00000002462 ##34	ENSBGRG00000002472 ##34	ENSBGRG00000002476 ##34	ENSBGRG00000002505 #17	IFNE (ENSBGRG00000002520) #18	ENSBGRG00000002533 #19	ENSBGRG00000002560 #21	ENSBGRG00000002626	DMRTA1 (ENSBGRG00000002642) #22	ELAVL2 (ENSBGRG00000002663) #23	IZUMO3 (ENSBGRG00000002804) #25	TUSC1 (ENSBGRG00000002852) #26	ENSBGRG00000000412	CAAP1 (ENSBGRG00000000429)	PLAA (ENSBGRG00000000455) #27	IFT74 (ENSBGRG00000000512) #28	LRRC19 (ENSBGRG00000000556) #29	TEK (ENSBGRG00000000666) #31	ENSBGRG00000001020	MOB3B (ENSBGRG00000001067) #32	ENSBGRG00000001104	C9orf72 (ENSBGRG00000001111) #35	ENSBGRG00000001152	LINGO2 (ENSBGRG00000001159) #36
Bos_b	ANCESTRAL SPECIES	3	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.b #14	ENSGT00940000154359.e #7	ENSGT01000000214430.a.a.a.a.a.b.`b.b.a.a.a #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b ##34	ENSGT01000000214430.a.a.a.a.a.b.ab #14	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b #17	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b #17	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #17	ENSGT01000000214430.a.a.b #18	ENSGT00950000182991.B.z #19	ENSGT00940000163078 #20	ENSGT00940000162423 #21	ENSGT00390000007552.f	ENSGT00940000160640 #22	ENSGT00940000156823.e #23	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000263474.a.b.b.f.g.a.a.a	ENSGT00550000074873.bb.b	ENSGT00390000017010	ENSGT00550000074944 #27	ENSGT00940000161278 #29	ENSGT00390000007109 #28	ENSGT00940000158840 #31	ENSGT00950000184123	ENSGT01000000214430.b #34	ENSGT01050000244898.a.a.a.b #32	ENSGT00390000005644 #35	ENSGT00940000156665 #36
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005005565 #14	ENSBIXG00005025521 ##34	ENSBIXG00005025546 #14	ENSBIXG00005025571 ##34	ENSBIXG00005025592 ##34	ENSBIXG00005025621 ##34	ENSBIXG00005025672 ##34	ENSBIXG00005025679 #14	ENSBIXG00005025752 #17	ENSBIXG00005007739 #17	ENSBIXG00005025926 #17	MTAP (ENSBIXG00005004427) #19	CDKN2A (ENSBIXG00005026038) #20	CDKN2B (ENSBIXG00005004453) #21	ENSBIXG00005007636	DMRTA1 (ENSBIXG00005026148) #22	ELAVL2 (ENSBIXG00005026326) #23	IZUMO3 (ENSBIXG00005026432) #25	TUSC1 (ENSBIXG00005004523) #26	ENSBIXG00005026478	ENSBIXG00005004531	CAAP1 (ENSBIXG00005026525)	ENSBIXG00005026532	PLAA (ENSBIXG00005026552) #27	LRRC19 (ENSBIXG00005026561) #29	IFT74 (ENSBIXG00005004546) #28	TEK (ENSBIXG00005026764) #31	ENSBIXG00005002481	IFNK (ENSBIXG00005004601) #34	C9orf72 (ENSBIXG00005026955) #35	LINGO2 (ENSBIXG00005026982) #36
Cow	MODERN SPECIES	27	IFNAG (ENSBTAG00000046443) #14	KLHL9 (ENSBTAG00000012375) #7	ENSBTAG00000055152 #14	ENSBTAG00000054099 ##34	IFN-TAU (ENSBTAG00000047698) ##34	ENSBTAG00000048891 #14	ENSBTAG00000054206 ##34	ENSBTAG00000025928 #14	IFN-tau-c1 (ENSBTAG00000053469) #17	IFNT2 (ENSBTAG00000053027) #17	IFNT3 (ENSBTAG00000050661) #17	IFNE (ENSBTAG00000039069) #18	ENSBTAG00000025929 #19	CDKN2A (ENSBTAG00000034220)	CDKN2B (ENSBTAG00000051567) #21	DMRTA1 (ENSBTAG00000001315) #22	ELAVL2 (ENSBTAG00000046348) #23	IZUMO3 (ENSBTAG00000023412) #25	TUSC1 (ENSBTAG00000008551) #26	ENSBTAG00000052519	ATP6V0C (ENSBTAG00000026428)	CAAP1 (ENSBTAG00000001223)	PLAA (ENSBTAG00000013011) #27	LRRC19 (ENSBTAG00000043983) #29	IFT74 (ENSBTAG00000019568) #28	TEK (ENSBTAG00000020148) #31	EQTN (ENSBTAG00000034391)	IFNK (ENSBTAG00000006853) #34	MOB3B (ENSBTAG00000000804) #32	C9orf72 (ENSBTAG00000010059) #35	LINGO2 (ENSBTAG00000016070) #36
American bison	MODERN SPECIES	3240					ENSBBBG00000018170 ##34	ENSBBBG00000018163 ##34	ENSBBBG00000009067 #14	ENSBBBG00000018145 #17	ENSBBBG00000006857 #17	IFNE (ENSBBBG00000018139) #18	MTAP (ENSBBBG00000018131) #19	CDKN2A (ENSBBBG00000007436) #20	ENSBBBG00000018093	ENSBBBG00000018086	ENSBBBG00000004445	DMRTA1 (ENSBBBG00000018078) #22	ELAVL2 (ENSBBBG00000018068) #23	IZUMO3 (ENSBBBG00000018026) #25	TUSC1 (ENSBBBG00000008010) #26	ENSBBBG00000004430	CAAP1 (ENSBBBG00000017988)	PLAA (ENSBBBG00000017959) #27	IFT74 (ENSBBBG00000017924) #28	LRRC19 (ENSBBBG00000017856) #29	TEK (ENSBBBG00000008384) #31	MOB3B (ENSBBBG00000017671) #32	IFNK (ENSBBBG00000017664) #34	C9orf72 (ENSBBBG00000017654) #35	LINGO2 (ENSBBBG00000017617) #36	ENSBBBG00000017613	ENSBBBG00000017610
Siberian musk deer	MODERN SPECIES	108	ENSMMSG00000000952 #14	ENSMMSG00000000940 #13	ENSMMSG00000000930 #13	ENSMMSG00000000919 #13	ENSMMSG00000000905 #14	ENSMMSG00000000898 #13	ENSMMSG00000000887 #13	ENSMMSG00000000873 #14	ENSMMSG00000000831	ENSMMSG00000000820 #8	ENSMMSG00000000807 #8	ENSMMSG00000000787 #8	ENSMMSG00000000778 #13	ENSMMSG00000000758 #19	CDKN2A (ENSMMSG00000000727) #20	DMRTA1 (ENSMMSG00000000694) #22	ENSMMSG00000000683	ELAVL2 (ENSMMSG00000000635) #23	ENSMMSG00000000596	IZUMO3 (ENSMMSG00000000550) #25	TUSC1 (ENSMMSG00000000526) #26	ENSMMSG00000000515	CAAP1 (ENSMMSG00000000493)	PLAA (ENSMMSG00000000462) #27	LRRC19 (ENSMMSG00000000437) #29	IFT74 (ENSMMSG00000000361) #28	TEK (ENSMMSG00000000195) #31	ENSMMSG00000000118	ENSMMSG00000000106 #34	MOB3B (ENSMMSG00000000088) #32	C9orf72 (ENSMMSG00000000067) #35
Yarkand deer	MODERN SPECIES	21	MLLT3 (ENSCHYG00000014130)	FOCAD (ENSCHYG00000023701)	HACD4 (ENSCHYG00000023620)	ENSCHYG00000023601 #11	ENSCHYG00000023588 ##34	ENSCHYG00000023573 #11	ENSCHYG00000023566 ##34	ENSCHYG00000023495 ##34	ENSCHYG00000023454 #17	KLHL9 (ENSCHYG00000023441) #7	ENSCHYG00000023424 ##34	IFNE (ENSCHYG00000023410) #18	ENSCHYG00000023395	ENSCHYG00000023368 #19	ENSCHYG00000023337 #21	DMRTA1 (ENSCHYG00000023312) #22	ELAVL2 (ENSCHYG00000023207) #23	ENSCHYG00000023179	ENSCHYG00000023157	IZUMO3 (ENSCHYG00000023052) #25	ENSCHYG00000023030	TUSC1 (ENSCHYG00000023011) #26	ENSCHYG00000022983	CAAP1 (ENSCHYG00000022921)	PLAA (ENSCHYG00000022781) #27	LRRC19 (ENSCHYG00000022730) #29	IFT74 (ENSCHYG00000022499) #28	TEK (ENSCHYG00000021500) #31	ENSCHYG00000021324	C9orf72 (ENSCHYG00000021206) #35	LINGO2 (ENSCHYG00000021182) #36