Rodentia ANCESTRAL SPECIES 9 ENSGT00390000009819.a.b.a.a.b.a ENSGT00390000009819.a.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b ENSGT01000000214430.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 Myomorpha ANCESTRAL SPECIES 1 ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b ENSGT01000000214430.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 Muroidea ANCESTRAL SPECIES 1 ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a ENSGT01000000214430.a.a.a.a.b ENSGT01000000214430.a.a.a.a.a.b.o ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.p.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 Upper Galilee mountains blind mole rat MODERN SPECIES 628 Klhl9 (ENSNGAG00000012889) #18 ENSNGAG00000015985 #19 ENSNGAG00000022636 #20 Cdkn2b (ENSNGAG00000012585) #21 Dmrta1 (ENSNGAG00000023922) #22 ENSNGAG00000021866 #23 Elavl2 (ENSNGAG00000014535) #24 ENSNGAG00000022004 #25 Izumo3 (ENSNGAG00000013642) #26 Tusc1 (ENSNGAG00000001051) #27 Caap1 (ENSNGAG00000022127) #28 ENSNGAG00000021141 #29 Plaa (ENSNGAG00000022466) #30 Ift74 (ENSNGAG00000005078) #31 Lrrc19 (ENSNGAG00000004826) #32 Tek (ENSNGAG00000019538) #33 Eqtn (ENSNGAG00000023403) #34 Mob3b (ENSNGAG00000023396) #35 C9orf72 (ENSNGAG00000023767) #36 Muroidea_A ANCESTRAL SPECIES 3 ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a ENSGT01000000214430.a.a.a.a.b ENSGT01000000214430.a.a.a.a.a.b.o ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.p.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00900000143271 ENSGT00940000159251 Cricetidae ANCESTRAL SPECIES 2 ENSGT00950000182920.b.a.b.a.b ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.o ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00900000143271 ENSGT00940000159251 Cricetidae_B ANCESTRAL SPECIES 2 ENSGT00950000183031.B.e.b ENSGT00390000008250 ENSGT00950000182920.b.a.b.a.b ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.o ENSGT00940000154359.e #18 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00900000143271 ENSGT00940000159251 ENSGT00940000155417.a.b Northern American deer mouse MODERN SPECIES 11 ENSPEMG00000025225 ENSPEMG00000030502 ENSPEMG00000024802 Klhl9 (ENSPEMG00000013714) #18 ENSPEMG00000030301 ENSPEMG00000027437 ENSPEMG00000027847 ENSPEMG00000024899 ENSPEMG00000026834 Ifne (ENSPEMG00000029831) ENSPEMG00000007998 #19 ENSPEMG00000029915 ENSPEMG00000010842 #20 ENSPEMG00000028835 Cdkn2b (ENSPEMG00000025789) #21 Dmrta1 (ENSPEMG00000008771) #22 Elavl2 (ENSPEMG00000014101) #24 ENSPEMG00000013102 ENSPEMG00000031412 Izumo3 (ENSPEMG00000019058) #26 Caap1 (ENSPEMG00000000545) #28 Plaa (ENSPEMG00000009992) #30 Ift74 (ENSPEMG00000017074) #31 Lrrc19 (ENSPEMG00000017681) #32 Tek (ENSPEMG00000000588) #33 Eqtn (ENSPEMG00000016567) #34 Mysm1 (ENSPEMG00000011781) ENSPEMG00000012194 Jun (ENSPEMG00000014041) Fggy (ENSPEMG00000007085) ENSPEMG00000026283 Prairie vole MODERN SPECIES 1 Focad (ENSMOCG00000016725) Hacd4 (ENSMOCG00000009794) ENSMOCG00000007135 ENSMOCG00000003596 ENSMOCG00000003333 ENSMOCG00000002912 ENSMOCG00000022936 Klhl9 (ENSMOCG00000003966) #18 ENSMOCG00000004176 ENSMOCG00000003427 ENSMOCG00000004406 ENSMOCG00000003644 Mtap (ENSMOCG00000012400) #19 ENSMOCG00000013892 #20 Cdkn2b (ENSMOCG00000015669) #21 Dmrta1 (ENSMOCG00000002337) #22 ENSMOCG00000004079 Elavl2 (ENSMOCG00000016960) #24 ENSMOCG00000018411 Izumo3 (ENSMOCG00000019669) #26 Tusc1 (ENSMOCG00000019464) #27 ENSMOCG00000003689 Caap1 (ENSMOCG00000012535) #28 Plaa (ENSMOCG00000017762) #30 Ift74 (ENSMOCG00000002321) #31 Lrrc19 (ENSMOCG00000008422) #32 Tek (ENSMOCG00000017310) #33 Eqtn (ENSMOCG00000018858) #34 Mysm1 (ENSMOCG00000001327) Jun (ENSMOCG00000006483) Fggy (ENSMOCG00000017533) Cricetinae ANCESTRAL SPECIES 5 ENSGT01000000214430.a.a.b ENSGT00950000182991.B.fb #19 ENSGT00950000182991.B.gb #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00900000143271 ENSGT00940000159251 Golden Hamster MODERN SPECIES 662 Adamtsl1 (ENSMAUG00000018361) Saxo1 (ENSMAUG00000004358) Rraga (ENSMAUG00000003702) ENSMAUG00000020314 Dennd4c (ENSMAUG00000002052) ENSMAUG00000016545 Acer2 (ENSMAUG00000020667) Slc24a2 (ENSMAUG00000016398) Mllt3 (ENSMAUG00000021318) Focad (ENSMAUG00000012306) Hacd4 (ENSMAUG00000000488) ENSMAUG00000004733 Mtap (ENSMAUG00000010309) #19 Cdkn2a (ENSMAUG00000003307) #20 Cdkn2b (ENSMAUG00000019635) #21 Dmrta1 (ENSMAUG00000004332) #22 Elavl2 (ENSMAUG00000011955) #24 Izumo3 (ENSMAUG00000014991) #26 Tusc1 (ENSMAUG00000020941) #27 ENSMAUG00000014308 #28 Plaa (ENSMAUG00000013719) #30 Ift74 (ENSMAUG00000001215) #31 ENSMAUG00000006577 #32 Tek (ENSMAUG00000018555) #33 Eqtn (ENSMAUG00000015891) #34 Mysm1 (ENSMAUG00000014841) ENSMAUG00000014400 Jun (ENSMAUG00000007038) Fggy (ENSMAUG00000019211) Hook1 (ENSMAUG00000017707) ENSMAUG00000008711 Murinae ANCESTRAL SPECIES 2 ENSGT00390000009819.a.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a.a ENSGT01000000214430.a.a.a.a.b ENSGT01000000214430.a.a.a.a.a.b.p.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.p.a.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00900000143271 ENSGT00940000159251 Mus ANCESTRAL SPECIES 3 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ENSGT01000000214430.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000168083 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417.a.b Mus_A ANCESTRAL SPECIES 3 ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ENSGT01000000214430.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a ENSGT00860000135766 ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000168083 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00940000159251 ENSGT00940000155417.a.b Mus_B ANCESTRAL SPECIES 5 ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ENSGT01000000214430.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b ENSGT00860000135766 ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000168083 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000164376.c ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00940000159251 Mus_C ANCESTRAL SPECIES 2 ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b ENSGT00860000135766 ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000168083 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000164376.c ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00390000007109 #31 ENSGT00940000161278 #32 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT00940000157721 ENSGT00940000162061 ENSGT01000000214434.F ENSGT00940000159251 Steppe mouse MODERN SPECIES 3181 Ifna4 (ENSMSIG00000015985) Ifna5 (ENSMSIG00000015987) Ifne (ENSMSIG00000015993) Mtap (ENSMSIG00000016003) #19 Cdkn2a (ENSMSIG00000016031) ENSMSIG00000016052 #21 Dmrta1 (ENSMSIG00000016072) #22 ENSMSIG00000016078 Zfp352 (ENSMSIG00000016079) Elavl2 (ENSMSIG00000016130) #24 spretus MODERN SPECIES 13 MGP_SPRETEiJ_G0027107 Pramel32 (MGP_SPRETEiJ_G0027108) MGP_SPRETEiJ_G0027109 MGP_SPRETEiJ_G0027110 MGP_SPRETEiJ_G0027111 MGP_SPRETEiJ_G0027112 Klhl9 (MGP_SPRETEiJ_G0027113) #18 MGP_SPRETEiJ_G0027114 MGP_SPRETEiJ_G0027115 MGP_SPRETEiJ_G0027116 MGP_SPRETEiJ_G0027117 Ifne (MGP_SPRETEiJ_G0027118) Mtap (MGP_SPRETEiJ_G0027119) #19 Cdkn2a (MGP_SPRETEiJ_G0027120) Cdkn2b (MGP_SPRETEiJ_G0027121) #21 Dmrta1 (MGP_SPRETEiJ_G0027122) #22 Zfp352 (MGP_SPRETEiJ_G0027123) Elavl2 (MGP_SPRETEiJ_G0027124) #24 Izumo3 (MGP_SPRETEiJ_G0027125) #26 Tusc1 (MGP_SPRETEiJ_G0027126) #27 Caap1 (MGP_SPRETEiJ_G0027127) #28 MGP_SPRETEiJ_G0027128 #29 Plaa (MGP_SPRETEiJ_G0027129) #30 Ift74 (MGP_SPRETEiJ_G0027130) #31 Lrrc19 (MGP_SPRETEiJ_G0027131) #32 MGP_SPRETEiJ_G0027132 Tek (MGP_SPRETEiJ_G0027133) #33 Eqtn (MGP_SPRETEiJ_G0027134) #34 Mysm1 (MGP_SPRETEiJ_G0027135) Jun (MGP_SPRETEiJ_G0027136) Fggy (MGP_SPRETEiJ_G0027137) Mouse MODERN SPECIES 13 Gm13275 (ENSMUSG00000099518) Gm13279 (ENSMUSG00000099420) Gm13285 (ENSMUSG00000095101) Gm13287 (ENSMUSG00000094648) Gm13288 (ENSMUSG00000070908) Ifna7 (ENSMUSG00000100713) Ifna11 (ENSMUSG00000100549) Ifna6 (ENSMUSG00000101252) Ifna5 (ENSMUSG00000096682) Ifna4 (ENSMUSG00000070904) Ifna1 (ENSMUSG00000095498) Ifne (ENSMUSG00000045364) Mtap (ENSMUSG00000062937) #19 Cdkn2a (ENSMUSG00000044303) Cdkn2b (ENSMUSG00000073802) #21 Dmrta1 (ENSMUSG00000043753) #22 Zfp352 (ENSMUSG00000070902) Elavl2 (ENSMUSG00000008489) #24 Izumo3 (ENSMUSG00000028533) #26 Gm12666 (ENSMUSG00000066107) Tusc1 (ENSMUSG00000054000) #27 Caap1 (ENSMUSG00000028578) #28 Plaa (ENSMUSG00000028577) #30 Ift74 (ENSMUSG00000028576) #31 Lrrc19 (ENSMUSG00000049799) #32 Tek (ENSMUSG00000006386) #33 Eqtn (ENSMUSG00000028575) #34 Mysm1 (ENSMUSG00000062627) Jun (ENSMUSG00000052684) Fggy (ENSMUSG00000028573) Hook1 (ENSMUSG00000028572) Ryukyu mouse MODERN SPECIES 13 MGP_CAROLIEiJ_G0026143 MGP_CAROLIEiJ_G0026144 Pramel32 (MGP_CAROLIEiJ_G0026145) MGP_CAROLIEiJ_G0026146 MGP_CAROLIEiJ_G0026147 MGP_CAROLIEiJ_G0026148 MGP_CAROLIEiJ_G0026149 Klhl9 (MGP_CAROLIEiJ_G0026150) #18 MGP_CAROLIEiJ_G0026151 MGP_CAROLIEiJ_G0026152 MGP_CAROLIEiJ_G0026153 Ifne (MGP_CAROLIEiJ_G0026154) Mtap (MGP_CAROLIEiJ_G0026155) #19 Cdkn2a (MGP_CAROLIEiJ_G0026156) Cdkn2b (MGP_CAROLIEiJ_G0026157) #21 Dmrta1 (MGP_CAROLIEiJ_G0026158) #22 Elavl2 (MGP_CAROLIEiJ_G0026159) #24 Izumo3 (MGP_CAROLIEiJ_G0026160) #26 Tusc1 (MGP_CAROLIEiJ_G0026161) #27 Caap1 (MGP_CAROLIEiJ_G0026162) #28 MGP_CAROLIEiJ_G0026163 #29 Plaa (MGP_CAROLIEiJ_G0026164) #30 MGP_CAROLIEiJ_G0026165 #31 Lrrc19 (MGP_CAROLIEiJ_G0026166) #32 Tek (MGP_CAROLIEiJ_G0026167) #33 Eqtn (MGP_CAROLIEiJ_G0026168) #34 Mysm1 (MGP_CAROLIEiJ_G0026169) Jun (MGP_CAROLIEiJ_G0026170) Fggy (MGP_CAROLIEiJ_G0026171) Hook1 (MGP_CAROLIEiJ_G0026172) Cyp2j13 (MGP_CAROLIEiJ_G0026173) Shrew mouse MODERN SPECIES 19 MGP_PahariEiJ_G0028480 MGP_PahariEiJ_G0028481 MGP_PahariEiJ_G0028482 MGP_PahariEiJ_G0028484 MGP_PahariEiJ_G0028483 Klhl9 (MGP_PahariEiJ_G0028485) #18 MGP_PahariEiJ_G0028486 MGP_PahariEiJ_G0028487 MGP_PahariEiJ_G0028489 MGP_PahariEiJ_G0028488 MGP_PahariEiJ_G0028490 Ifne (MGP_PahariEiJ_G0028491) Mtap (MGP_PahariEiJ_G0028492) #19 Cdkn2a (MGP_PahariEiJ_G0028493) Cdkn2b (MGP_PahariEiJ_G0028494) #21 Dmrta1 (MGP_PahariEiJ_G0028495) #22 Elavl2 (MGP_PahariEiJ_G0028496) #24 Izumo3 (MGP_PahariEiJ_G0028497) #26 Tusc1 (MGP_PahariEiJ_G0028498) #27 Caap1 (MGP_PahariEiJ_G0028499) #28 MGP_PahariEiJ_G0028500 #29 Plaa (MGP_PahariEiJ_G0028501) #30 Ift74 (MGP_PahariEiJ_G0028502) #31 Lrrc19 (MGP_PahariEiJ_G0028503) #32 Tek (MGP_PahariEiJ_G0028504) #33 MGP_PahariEiJ_G0028505 #34 Mysm1 (MGP_PahariEiJ_G0028506) Jun (MGP_PahariEiJ_G0028507) Fggy (MGP_PahariEiJ_G0028508) Hook1 (MGP_PahariEiJ_G0028509) Cyp2j13 (MGP_PahariEiJ_G0028510) Rat MODERN SPECIES 15 LOC120103158 (ENSRNOG00000064351) LOC120103159 (ENSRNOG00000069770) LOC120103160 (ENSRNOG00000063583) LOC120103161 (ENSRNOG00000063625) LOC120103162 (ENSRNOG00000065583) RGD1560539 (ENSRNOG00000066962) LOC120103163 (ENSRNOG00000066857) LOC120103164 (ENSRNOG00000070321) LOC100911527 (ENSRNOG00000065328) Ifne (ENSRNOG00000024204) LOC100362345 (ENSRNOG00000024197) Mtap (ENSRNOG00000006615) #19 ENSRNOG00000070364 Cdkn2a (ENSRNOG00000059837) Cdkn2b (ENSRNOG00000006735) #21 Dmrta1 (ENSRNOG00000024093) #22 Zfp352 (ENSRNOG00000033600) Zfp353 (ENSRNOG00000050804) Elavl2 (ENSRNOG00000006853) #24 Izumo3 (ENSRNOG00000022488) #26 AABR07049223.1 (ENSRNOG00000032516) AABR07049228.1 (ENSRNOG00000056007) Tusc1 (ENSRNOG00000066328) #27 Caap1 (ENSRNOG00000007299) #28 Plaa (ENSRNOG00000007753) #30 Ift74 (ENSRNOG00000008075) #31 Lrrc19 (ENSRNOG00000022225) #32 Tek (ENSRNOG00000008587) #33 Eqtn (ENSRNOG00000026323) #34 Mysm1 (ENSRNOG00000026299) Jun (ENSRNOG00000026293) Lesser Egyptian jerboa MODERN SPECIES 66 Dennd4c (ENSJJAG00000022774) ENSJJAG00000011871 Acer2 (ENSJJAG00000020889) Slc24a2 (ENSJJAG00000020852) ENSJJAG00000018542 Mllt3 (ENSJJAG00000012196) Focad (ENSJJAG00000024309) Hacd4 (ENSJJAG00000024303) ENSJJAG00000024178 Klhl9 (ENSJJAG00000007691) #18 ENSJJAG00000010173 #19 ENSJJAG00000017320 #20 Cdkn2b (ENSJJAG00000021247) #21 ENSJJAG00000009128 ENSJJAG00000009725 Dmrta1 (ENSJJAG00000015837) #22 ENSJJAG00000021773 Elavl2 (ENSJJAG00000008247) #24 Izumo3 (ENSJJAG00000017341) #26 ENSJJAG00000011332 ENSJJAG00000019508 Caap1 (ENSJJAG00000012208) #28 Plaa (ENSJJAG00000013453) #30 Lrrc19 (ENSJJAG00000022557) #32 Ift74 (ENSJJAG00000017963) #31 Tek (ENSJJAG00000019197) #33 ENSJJAG00000020051 Mob3b (ENSJJAG00000000886) #35 C9orf72 (ENSJJAG00000008608) #36 Lingo2 (ENSJJAG00000010453) ENSJJAG00000022023 Kangaroo rat MODERN SPECIES 372 Saxo1 (ENSDORG00000026559) Haus6 (ENSDORG00000026577) ENSDORG00000014197 Dennd4c (ENSDORG00000012055) ENSDORG00000012057 Acer2 (ENSDORG00000002403) Slc24a2 (ENSDORG00000015412) ENSDORG00000027266 ENSDORG00000028514 Focad (ENSDORG00000006921) Hacd4 (ENSDORG00000006925) Klhl9 (ENSDORG00000028408) #18 Mtap (ENSDORG00000012074) #19 ENSDORG00000012075 #20 Cdkn2b (ENSDORG00000012076) #21 Dmrta1 (ENSDORG00000015411) #22 Elavl2 (ENSDORG00000010437) #24 Izumo3 (ENSDORG00000027519) #26 ENSDORG00000005292 Tusc1 (ENSDORG00000029686) #27 Caap1 (ENSDORG00000025530) #28 Plaa (ENSDORG00000002789) #30 Ift74 (ENSDORG00000008963) #31 Lrrc19 (ENSDORG00000008965) #32 Tek (ENSDORG00000010652) #33 ENSDORG00000010654 #34 Mob3b (ENSDORG00000010444) #35 C9orf72 (ENSDORG00000006734) #36 Lingo2 (ENSDORG00000029438) Rodentia_A ANCESTRAL SPECIES 11 ENSGT00390000008250 ENSGT00950000182920.b.a.b.a.b ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00390000009819.a.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b ENSGT00940000154359.e #18 ENSGT00940000167452 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 Hystricomorpha ANCESTRAL SPECIES 7 ENSGT01000000214430.a.a.a.a.b ENSGT01000000214430.a.a.a.a.a.b ENSGT01000000214430.a.a.a.a.a.a ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT01100000266946 ENSGT00940000157772 ENSGT00940000153173.a Hystricomorpha_a ANCESTRAL SPECIES 5 ENSGT01000000214430.a.b ENSGT01000000214430.a.a.a.a.a.b ENSGT01000000214430.a.a.a.a.a.a ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017010 #28 ENSGT00860000136187 #29 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 ENSGT00940000153173.a ENSGT00530000064170.e Hystricomorpha_b ANCESTRAL SPECIES 11 ENSGT01000000214430.a.a.a.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078 #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017010 #28 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 ENSGT00940000153173.a ENSGT00530000064170.e ENSGT01020000230598 ENSGT00390000007535 Long-tailed chinchilla MODERN SPECIES 179 MTAP (ENSCLAG00000001731) #19 CDKN2A (ENSCLAG00000001664) #20 CDKN2B (ENSCLAG00000004253) #21 ENSCLAG00000004081 #22 ELAVL2 (ENSCLAG00000003388) #24 CAAP1 (ENSCLAG00000002895) #28 PLAA (ENSCLAG00000002600) #30 LRRC19 (ENSCLAG00000002476) #32 IFT74 (ENSCLAG00000002217) #31 TEK (ENSCLAG00000002200) #33 ENSCLAG00000001999 #34 ENSCLAG00000001968 #34 MOB3B (ENSCLAG00000001885) #35 C9orf72 (ENSCLAG00000001862) #36 LINGO2 (ENSCLAG00000017459) ENSCLAG00000001658 ENSCLAG00000002806 ACO1 (ENSCLAG00000002487) RIGI (ENSCLAG00000002351) Degu MODERN SPECIES 140 ENSODEG00000004090 ENSODEG00000004039 ENSODEG00000003787 #19 ENSODEG00000003701 CDKN2B (ENSODEG00000003617) #21 ENSODEG00000003574 DMRTA1 (ENSODEG00000003392) #22 ELAVL2 (ENSODEG00000002531) #24 ENSODEG00000002352 ENSODEG00000002277 ENSODEG00000018769 CAAP1 (ENSODEG00000002253) #28 PLAA (ENSODEG00000003249) #30 LRRC19 (ENSODEG00000003217) #32 IFT74 (ENSODEG00000003146) #31 TEK (ENSODEG00000002511) #33 MOB3B (ENSODEG00000002400) #35 C9orf72 (ENSODEG00000002381) #36 LINGO2 (ENSODEG00000018786) ENSODEG00000018803 ENSODEG00000002236 Guinea pig MODERN SPECIES 2 ENSCPOG00000036367 ENSCPOG00000031809 ENSCPOG00000037617 ENSCPOG00000040424 ENSCPOG00000021662 ENSCPOG00000039788 ENSCPOG00000036041 ENSCPOG00000027262 ENSCPOG00000010467 ENSCPOG00000033588 ENSCPOG00000010375 ENSCPOG00000000825 #19 CDKN2A (ENSCPOG00000023988) #20 CDKN2B (ENSCPOG00000001268) #21 DMRTA1 (ENSCPOG00000036480) #22 ELAVL2 (ENSCPOG00000010472) #24 CAAP1 (ENSCPOG00000037143) #28 ENSCPOG00000032640 #29 PLAA (ENSCPOG00000012969) #30 IFT74 (ENSCPOG00000012980) #31 LRRC19 (ENSCPOG00000012981) #32 TEK (ENSCPOG00000009907) #33 MOB3B (ENSCPOG00000009470) #35 ENSCPOG00000000866 C9orf72 (ENSCPOG00000009473) #36 LINGO2 (ENSCPOG00000008899) ENSCPOG00000040788 ENSCPOG00000033096 H2BC18 (ENSCPOG00000030049) ENSCPOG00000037353 Naked mole-rat female MODERN SPECIES 3 ENSHGLG00000044890 ENSHGLG00000006210 ENSHGLG00000037708 ENSHGLG00000004959 ENSHGLG00000011793 ENSHGLG00000005602 ENSHGLG00000000210 ENSHGLG00000035491 ENSHGLG00000041847 ENSHGLG00000006616 #19 ENSHGLG00000020314 ENSHGLG00000008650 ENSHGLG00000034314 #20 CDKN2B (ENSHGLG00000038311) #21 ENSHGLG00000040016 DMRTA1 (ENSHGLG00000051021) #22 ELAVL2 (ENSHGLG00000005423) #24 ENSHGLG00000047261 ENSHGLG00000001616 ENSHGLG00000020416 TUSC1 (ENSHGLG00000039095) #27 ENSHGLG00000036016 ENSHGLG00000034551 #28 PLAA (ENSHGLG00000010977) #30 LRRC19 (ENSHGLG00000040675) #32 ENSHGLG00000032796 IFT74 (ENSHGLG00000007564) #31 ENSHGLG00000037234 TEK (ENSHGLG00000017418) #33 MOB3B (ENSHGLG00000005405) #35 ENSHGLG00000020201 Sciuridae ANCESTRAL SPECIES 6 ENSGT00950000182920.b.a.b.a.b ENSGT00940000158215 ENSGT00390000009819.a.b.a.a.b.a ENSGT00730000110920.b.a.b ENSGT01030000234532.B.e.a ENSGT00940000155903 ENSGT00390000004438 ENSGT00530000062962.b.b ENSGT01000000214430.a.b ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078.g #20 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00940000157772 ENSGT00940000153173.a Marmotini ANCESTRAL SPECIES 1 ENSGT01000000214430.a.b.e ENSGT01000000214430.a.a.a.a.a.b.m.a ENSGT01000000214430.a.b.f.a.b ENSGT01000000214430.a.a.a.a.a.b.n.b.b ENSGT01000000214430.a.a.a.a.a.b.n.a.a ENSGT00940000154359.e #18 ENSGT01000000214430.a.a.a.a.a.b.m.b ENSGT01000000214430.a.a.a.a.a.b.n.b.a.a ENSGT01000000214430.a.b.f.a.a ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000163078.g #20 ENSGT00940000165099 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00960000189870 ENSGT00940000157772 Marmotini_b ANCESTRAL SPECIES 2 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b ENSGT01000000214430.a.a.b ENSGT00950000182991.B #19 ENSGT00940000165099 ENSGT00940000162423 #21 ENSGT00940000160640 #22 ENSGT00940000156823.e #24 ENSGT00390000017601 #26 ENSGT00390000013920 #27 ENSGT00390000017010 #28 ENSGT00550000074944 #30 ENSGT00940000161278 #32 ENSGT00390000007109 #31 ENSGT00940000158840 #33 ENSGT00390000010786 #34 ENSGT01050000244898.a.a.a.b #35 ENSGT01000000214430.b ENSGT00390000005644 #36 ENSGT00940000156665 ENSGT00960000189870 ENSGT00940000157772 Squirrel MODERN SPECIES 252 ENSSTOG00000024906 ACER2 (ENSSTOG00000022847) SLC24A2 (ENSSTOG00000028358) MLLT3 (ENSSTOG00000027195) FOCAD (ENSSTOG00000015742) HACD4 (ENSSTOG00000015776) ENSSTOG00000021945 ENSSTOG00000033477 ENSSTOG00000027803 ENSSTOG00000033711 ENSSTOG00000021564 ENSSTOG00000019950 IFNE (ENSSTOG00000024739) MTAP (ENSSTOG00000014404) #19 CDKN2B (ENSSTOG00000008721) #21 DMRTA1 (ENSSTOG00000022459) #22 Arctic ground squirrel MODERN SPECIES 198 ENSUPAG00010017776 ENSUPAG00010017790 IFNE (ENSUPAG00010017802) MTAP (ENSUPAG00010017804) #19 ENSUPAG00010017810 CDKN2B (ENSUPAG00010017817) #21 DMRTA1 (ENSUPAG00010017830) #22 ELAVL2 (ENSUPAG00010017838) #24 IZUMO3 (ENSUPAG00010017958) #26 Alpin marmot MODERN SPECIES 30 ENSMMMG00000009657 IFNE (ENSMMMG00000009652) ENSMMMG00000009642 MTAP (ENSMMMG00000009628) #19 ENSMMMG00000009612 #20 ENSMMMG00000009596 #20 DMRTA1 (ENSMMMG00000009543) #22 ENSMMMG00000009529 ELAVL2 (ENSMMMG00000009415) #24 IZUMO3 (ENSMMMG00000009377) #26 ENSMMMG00000009342 CAAP1 (ENSMMMG00000009307) #28 PLAA (ENSMMMG00000009283) #30 LRRC19 (ENSMMMG00000009258) #32 IFT74 (ENSMMMG00000009198) #31 TEK (ENSMMMG00000009044) #33 EQTN (ENSMMMG00000009014) #34 MOB3B (ENSMMMG00000009010) #35 C9orf72 (ENSMMMG00000008985) #36 ENSMMMG00000008980 LINGO2 (ENSMMMG00000008968) ENSMMMG00000008959 Eurasian red squirrel MODERN SPECIES 6 ENSSVLG00005023116 ENSSVLG00005023171 ENSSVLG00005023180 ENSSVLG00005023193 ENSSVLG00005023217 ENSSVLG00005023225 ENSSVLG00005023234 ENSSVLG00005023243 ENSSVLG00005023253 ENSSVLG00005023273 ENSSVLG00005023283 ENSSVLG00005023288 ENSSVLG00005023302 #19 CDKN2A (ENSSVLG00005023359) #20 CDKN2B (ENSSVLG00005023398) #21 DMRTA1 (ENSSVLG00005023462) #22 ELAVL2 (ENSSVLG00005023496) #24 IZUMO3 (ENSSVLG00005023611) #26 TUSC1 (ENSSVLG00005023687) #27 ENSSVLG00005023697 ENSSVLG00005023705 ENSSVLG00005023720 PLAA (ENSSVLG00005023742) #30 IFT74 (ENSSVLG00005023765) #31 LRRC19 (ENSSVLG00005023797) #32 TEK (ENSSVLG00005023870) #33 ENSSVLG00005024155 ENSSVLG00005024176 MOB3B (ENSSVLG00005024202) #35 IFNK (ENSSVLG00005024213) C9orf72 (ENSSVLG00005024231) #36