Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000160801 #8	ENSGT00940000154873.g.b #9	ENSGT00940000154873.g.a #10	ENSGT00940000153500.a.b #11	ENSGT00940000154003.B #12	ENSGT00390000002725	ENSGT00940000156853 #13	ENSGT00390000015892 #14	ENSGT00950000182933.A.a.a #15	ENSGT00950000183044.a.a.a.d #16	ENSGT00940000160070 #17	ENSGT00940000159703 #18	ENSGT00550000075065 #19	ENSGT00940000158204.a #20	ENSGT00550000075186 #21	ENSGT00410000025615 #22	ENSGT00390000006233.c.b #23	ENSGT00940000157351 #24	ENSGT00940000159603 #25	ENSGT00940000161850 #26	ENSGT00940000157969 #27	ENSGT00940000156783 #28	ENSGT00390000000190 #29	ENSGT00940000158297 #30	ENSGT00730000111327 #31	ENSGT00390000004169 #32	ENSGT00390000003596 #33	ENSGT00390000013260.B #35	ENSGT00940000160874 #34	ENSGT00390000018731 #36	ENSGT00390000016682 #37
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000160801 #8	ENSGT00940000154873.g.b #9	ENSGT00940000154873.g.a #10	ENSGT00940000153500.a.b #11	ENSGT00940000154003.B #12	ENSGT00940000170700	ENSGT00940000156853 #13	ENSGT00390000015892 #14	ENSGT00950000182933.A.a.a #15	ENSGT00950000183044.a.a.a.d #16	ENSGT00940000160070 #17	ENSGT00940000159703 #18	ENSGT00550000075065 #19	ENSGT00940000158204.a #20	ENSGT00550000075186 #21	ENSGT00410000025615 #22	ENSGT00390000006233.c.b #23	ENSGT00940000157351 #24	ENSGT00940000159603 #25	ENSGT00940000161850 #26	ENSGT00940000157969 #27	ENSGT00940000156783 #28	ENSGT00390000000190 #29	ENSGT00940000158297 #30	ENSGT00730000111327 #31	ENSGT00390000004169 #32	ENSGT00390000003596 #33	ENSGT00390000013260.B #35	ENSGT00940000160874 #34	ENSGT00390000018731 #36	ENSGT00390000016682 #37
Goat	MODERN SPECIES	10	GPS1 (ENSCHIG00000026834) #7	RFNG (ENSCHIG00000026042) #8	ENSCHIG00000023379 #9	DCXR (ENSCHIG00000026975) #10	RAC3 (ENSCHIG00000021241) #11	LRRC45 (ENSCHIG00000024091) #12	ASPSCR1 (ENSCHIG00000022678) #13	NOTUM (ENSCHIG00000017267) #14	MYADML2 (ENSCHIG00000011879) #15	PYCR1 (ENSCHIG00000026809) #16	MAFG (ENSCHIG00000015647) #17	SIRT7 (ENSCHIG00000016745) #18	PCYT2 (ENSCHIG00000007479) #19	NPB (ENSCHIG00000021218) #20	ANAPC11 (ENSCHIG00000013891) #21	ALYREF (ENSCHIG00000017396) #22	ARHGDIA (ENSCHIG00000021653) #23	P4HB (ENSCHIG00000026541) #24	PPP1R27 (ENSCHIG00000013059) #25	MCRIP1 (ENSCHIG00000026672) #26	GCGR (ENSCHIG00000011335) #27	SLC25A10 (ENSCHIG00000014615) #28	MRPL12 (ENSCHIG00000027210) #29	HGS (ENSCHIG00000025208) #30	ARL16 (ENSCHIG00000017946) #31	CCDC137 (ENSCHIG00000011693) #32	OXLD1 (ENSCHIG00000016238) #33	TSPAN10 (ENSCHIG00000026861) #34	PDE6G (ENSCHIG00000016232) #35	NPLOC4 (ENSCHIG00000008794) #36	FAAP100 (ENSCHIG00000019046) #37
Rambouillet Sheep	MODERN SPECIES	2	ENSOARG00020025535 #9	ENSOARG00020025492 #10	ENSOARG00020025476 #10	RAC3 (ENSOARG00020025472) #11	LRRC45 (ENSOARG00020025451) #12	ENSOARG00020025443	ASPSCR1 (ENSOARG00020025424) #13	NOTUM (ENSOARG00020025412) #14	MYADML2 (ENSOARG00020025407) #15	PYCR1 (ENSOARG00020025392) #16	MAFG (ENSOARG00020025383) #17	SIRT7 (ENSOARG00020025373) #18	PCYT2 (ENSOARG00020025311) #19	NPB (ENSOARG00020025289) #20	ANAPC11 (ENSOARG00020025279) #21	ALYREF (ENSOARG00020025263) #22	ARHGDIA (ENSOARG00020025245) #23	P4HB (ENSOARG00020025236) #24	PPP1R27 (ENSOARG00020025219) #25	MCRIP1 (ENSOARG00020025199) #26	GCGR (ENSOARG00020025179) #27	SLC25A10 (ENSOARG00020025141) #28	MRPL12 (ENSOARG00020025126) #29	HGS (ENSOARG00020025119) #30	ARL16 (ENSOARG00020025114) #31	CCDC137 (ENSOARG00020025104) #32	OXLD1 (ENSOARG00020025092) #33	PDE6G (ENSOARG00020025080) #35	TSPAN10 (ENSOARG00020025073) #34	NPLOC4 (ENSOARG00020025045) #36	FAAP100 (ENSOARG00020025026) #37
Bovinae	ANCESTRAL SPECIES		ENSGT00940000160801 #8	ENSGT00940000154873.g.b #9	ENSGT00940000154873.g.a #10	ENSGT00940000153500.a.b #11	ENSGT00940000154003.B #12	ENSGT00390000002725	ENSGT00940000156853 #13	ENSGT00390000015892 #14	ENSGT00950000182933.A.a.a #15	ENSGT00950000183044.a.a.a.d #16	ENSGT00940000160070 #17	ENSGT00940000159703 #18	ENSGT00550000075065 #19	ENSGT00940000158204.a #20	ENSGT00550000075186 #21	ENSGT00410000025615 #22	ENSGT00390000006233.c.b #23	ENSGT00940000157351 #24	ENSGT00940000159603 #25	ENSGT00940000161850 #26	ENSGT00940000157969 #27	ENSGT00940000156783 #28	ENSGT00390000000190 #29	ENSGT00940000158297 #30	ENSGT00730000111327 #31	ENSGT00390000004169 #32	ENSGT00390000003596 #33	ENSGT00390000013260.B #35	ENSGT00940000160874 #34	ENSGT00390000018731 #36	ENSGT00390000016682 #37
American bison	MODERN SPECIES	3285	GPS1 (ENSBBBG00000003847) #7	RFNG (ENSBBBG00000015449) #8	ENSBBBG00000015458 #9	DCXR (ENSBBBG00000015467) #10	LRRC45 (ENSBBBG00000015526) #12	ENSBBBG00000003868	ENSBBBG00000015543	NOTUM (ENSBBBG00000007366) #14	MYADML2 (ENSBBBG00000015567) #15	PYCR1 (ENSBBBG00000015601) #16	MAFG (ENSBBBG00000003476) #17	SIRT7 (ENSBBBG00000003465) #18	PCYT2 (ENSBBBG00000003422) #19	NPB (ENSBBBG00000015625) #20	ANAPC11 (ENSBBBG00000015651) #21	ALYREF (ENSBBBG00000015659) #22	ARHGDIA (ENSBBBG00000015676) #23	P4HB (ENSBBBG00000015684) #24	PPP1R27 (ENSBBBG00000015692) #25	MCRIP1 (ENSBBBG00000015740) #26	GCGR (ENSBBBG00000015780) #27	SLC25A10 (ENSBBBG00000015815) #28	MRPL12 (ENSBBBG00000008550) #29	HGS (ENSBBBG00000015853) #30	ARL16 (ENSBBBG00000015867) #31	CCDC137 (ENSBBBG00000015881) #32	OXLD1 (ENSBBBG00000015885) #33	PDE6G (ENSBBBG00000000775) #35	TSPAN10 (ENSBBBG00000015968) #34	NPLOC4 (ENSBBBG00000016001) #36	FAAP100 (ENSBBBG00000016021) #37
Bos	ANCESTRAL SPECIES	1	ENSGT00940000154873.g.b #9	ENSGT00940000154873.g.a.c.a #10	ENSGT00940000154873.g.a.d #10	ENSGT00940000153500.a.b #11	ENSGT00940000154003.B #12	ENSGT00390000002725	ENSGT00940000156853 #13	ENSGT00390000015892 #14	ENSGT00950000182933.A.a.a #15	ENSGT00950000183044.a.a.a.d #16	ENSGT00940000160070 #17	ENSGT00940000159703 #18	ENSGT00550000075065 #19	ENSGT00940000158204.a #20	ENSGT00550000075186 #21	ENSGT00410000025615 #22	ENSGT00390000006233.c.b #23	ENSGT00940000157351 #24	ENSGT00940000159603 #25	ENSGT00940000161850.c.a #26	ENSGT00940000157969 #27	ENSGT00940000156783 #28	ENSGT00390000000190 #29	ENSGT00940000158297 #30	ENSGT00730000111327 #31	ENSGT00390000004169 #32	ENSGT00390000003596 #33	ENSGT00390000013260.B #35	ENSGT00940000160874 #34	ENSGT00390000018731 #36	ENSGT00390000016682 #37
Bos_a	ANCESTRAL SPECIES		ENSGT00940000154873.g.b #9	ENSGT00940000154873.g.a.c.a #10	ENSGT00940000153500.a.b #11	ENSGT00940000154003.B #12	ENSGT00390000002725	ENSGT00940000156853 #13	ENSGT00390000015892 #14	ENSGT00950000182933.A.a.a #15	ENSGT00950000183044.a.a.a.d #16	ENSGT00940000160070 #17	ENSGT00940000159703 #18	ENSGT00550000075065 #19	ENSGT00940000158204.a #20	ENSGT00550000075186 #21	ENSGT00390000018868.B.a	ENSGT00410000025615 #22	ENSGT00390000006233.c.b #23	ENSGT00940000157351 #24	ENSGT00940000159603 #25	ENSGT00940000161850.c.a #26	ENSGT00940000157969 #27	ENSGT00940000156783 #28	ENSGT00390000000190 #29	ENSGT00940000158297 #30	ENSGT00730000111327 #31	ENSGT00390000004169 #32	ENSGT00390000003596 #33	ENSGT00390000013260.B #35	ENSGT00940000160874 #34	ENSGT00390000018731 #36	ENSGT00390000016682 #37
Domestic yak	MODERN SPECIES	10	ENSBGRG00000005043 #9	ENSBGRG00000004998 #10	ENSBGRG00000004937 #10	ENSBGRG00000004878 #11	LRRC45 (ENSBGRG00000004499) #12	ENSBGRG00000004458	ASPSCR1 (ENSBGRG00000004411) #13	NOTUM (ENSBGRG00000004379) #14	MYADML2 (ENSBGRG00000004356) #15	PYCR1 (ENSBGRG00000004273) #16	ENSBGRG00000004242 #17	SIRT7 (ENSBGRG00000004185) #18	PCYT2 (ENSBGRG00000004030) #19	NPB (ENSBGRG00000004008) #20	ANAPC11 (ENSBGRG00000003986) #21	ALYREF (ENSBGRG00000003921) #22	ARHGDIA (ENSBGRG00000003861) #23	P4HB (ENSBGRG00000003814) #24	PPP1R27 (ENSBGRG00000025657) #25	ENSBGRG00000025624 #26	GCGR (ENSBGRG00000025609) #27	SLC25A10 (ENSBGRG00000025566) #28	MRPL12 (ENSBGRG00000025552) #29	HGS (ENSBGRG00000025508) #30	ARL16 (ENSBGRG00000025489) #31	CCDC137 (ENSBGRG00000025468) #32	OXLD1 (ENSBGRG00000025463) #33	ENSBGRG00000025444 #35	TSPAN10 (ENSBGRG00000025439) #34	NPLOC4 (ENSBGRG00000025394) #36	FAAP100 (ENSBGRG00000025378) #37
Bos_b	ANCESTRAL SPECIES	21	ENSGT00940000154873.g.b #9	ENSGT00940000154873.g.a.c.a #10	ENSGT00940000154873.g.a.d #10	ENSGT00940000153500.a.b #11	ENSGT00940000154003.B #12	ENSGT00390000002725	ENSGT00940000156853 #13	ENSGT00390000015892 #14	ENSGT00950000182933.A.a.a #15	ENSGT00950000183044.a.a.a.d #16	ENSGT00940000160070 #17	ENSGT00940000159703 #18	ENSGT00550000075065 #19	ENSGT00940000158204.a #20	ENSGT00550000075186.l #21	ENSGT00410000025615 #22	ENSGT00390000006233.c.b #23	ENSGT00940000157351 #24	ENSGT00940000159603 #25	ENSGT00940000161850.c.a #26	ENSGT00940000157969 #27	ENSGT00940000156783 #28	ENSGT00390000000190 #29	ENSGT00940000158297 #30	ENSGT00730000111327 #31	ENSGT00390000004169 #32	ENSGT00390000003596 #33	ENSGT00390000013260.B #35	ENSGT00940000160874 #34	ENSGT00390000018731 #36	ENSGT00390000016682 #37
Cow	MODERN SPECIES	10	DCXR (ENSBTAG00000047043) #9	ENSBTAG00000051698 #10	RAC3 (ENSBTAG00000022927) #11	DCXR (ENSBTAG00000008747) #10	LRRC45 (ENSBTAG00000004111) #12	CENPX (ENSBTAG00000004108)	ASPSCR1 (ENSBTAG00000004632) #13	NOTUM (ENSBTAG00000053558) #14	MYADML2 (ENSBTAG00000000044) #15	PYCR1 (ENSBTAG00000000042) #16	MAFG (ENSBTAG00000000040) #17	SIRT7 (ENSBTAG00000000039) #18	PCYT2 (ENSBTAG00000001868) #19	NPB (ENSBTAG00000013898) #20	ANAPC11 (ENSBTAG00000001937) #21	ALYREF (ENSBTAG00000008498) #22	ARHGDIA (ENSBTAG00000030209) #23	P4HB (ENSBTAG00000006045) #24	PPP1R27 (ENSBTAG00000024929) #25	MCRIP1 (ENSBTAG00000019812) #26	GCGR (ENSBTAG00000003786) #27	SLC25A10 (ENSBTAG00000055145) #28	MRPL12 (ENSBTAG00000000417) #29	HGS (ENSBTAG00000000411) #30	ARL16 (ENSBTAG00000053129) #31	CCDC137 (ENSBTAG00000000356) #32	OXLD1 (ENSBTAG00000000355) #33	PDE6G (ENSBTAG00000000354) #35	TSPAN10 (ENSBTAG00000040573) #34	NPLOC4 (ENSBTAG00000019105) #36	FAAP100 (ENSBTAG00000019104) #37
Hybrid Bos Indicus	MODERN SPECIES	10	RFNG (ENSBIXG00005015767) #8	ENSBIXG00005015749 #9	DCXR (ENSBIXG00005015724) #10	RAC3 (ENSBIXG00005015712) #11	LRRC45 (ENSBIXG00005015698) #12	ENSBIXG00005015625	ASPSCR1 (ENSBIXG00005000232) #13	NOTUM (ENSBIXG00005015579) #14	MYADML2 (ENSBIXG00005002325) #15	PYCR1 (ENSBIXG00005015511) #16	MAFG (ENSBIXG00005015395) #17	SIRT7 (ENSBIXG00005015367) #18	PCYT2 (ENSBIXG00005015341) #19	NPB (ENSBIXG00005002236) #20	ENSBIXG00005006558 #21	ALYREF (ENSBIXG00005015130) #22	ARHGDIA (ENSBIXG00005015102) #23	P4HB (ENSBIXG00005002214) #24	PPP1R27 (ENSBIXG00005006926) #25	MCRIP1 (ENSBIXG00005015031) #26	GCGR (ENSBIXG00005014961) #27	SLC25A10 (ENSBIXG00005014928) #28	MRPL12 (ENSBIXG00005005498) #29	HGS (ENSBIXG00005007754) #30	ARL16 (ENSBIXG00005007457) #31	CCDC137 (ENSBIXG00005014820) #32	OXLD1 (ENSBIXG00005014805) #33	PDE6G (ENSBIXG00005014790) #35	TSPAN10 (ENSBIXG00005014757) #34	FAAP100 (ENSBIXG00005014736) #37	ENSBIXG00005014667 #36