Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00550000075063 #8	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000163335 #11	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT00860000135857	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00390000015123.a #24	ENSGT00940000155110 #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00950000183152.B.c.b #31	ENSGT00390000005702 #32	ENSGT00940000161496 #33	ENSGT00940000162716 #34	ENSGT00940000160881 #35	ENSGT00940000156204 #36	ENSGT00940000162407 #37	ENSGT00930000151055
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000156119 #7	ENSGT00550000075063 #8	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000163335 #11	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00390000015123.a #24	ENSGT00940000155110.c #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00950000183152.B.c.b #31	ENSGT00390000005702 #32	ENSGT00940000161496 #33	ENSGT00940000162716 #34	ENSGT00940000160881 #35	ENSGT00940000156204 #36	ENSGT00940000162407 #37	ENSGT00930000151055
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000156119 #7	ENSGT00550000075063 #8	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000163335 #11	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00390000015123.a #24	ENSGT00940000155110.c #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00950000183152.B.c.b #31	ENSGT00390000005702 #32	ENSGT00940000161496 #33	ENSGT00940000162716 #34	ENSGT00940000160881 #35	ENSGT00940000156204.l #36	ENSGT00940000162407 #37	ENSGT00930000151055
Alpin marmot	MODERN SPECIES	45	TBCB (ENSMMMG00000004569) #7	POLR2I (ENSMMMG00000004579) #8	OVOL3 (ENSMMMG00000004592) #9	WDR62 (ENSMMMG00000004609) #10	THAP8 (ENSMMMG00000004769) #11	CLIP3 (ENSMMMG00000004775) #12	ALKBH6 (ENSMMMG00000004789) #13	SYNE4 (ENSMMMG00000004796) #14	SDHAF1 (ENSMMMG00000004837) #15	LRFN3 (ENSMMMG00000004845) #16	TYROBP (ENSMMMG00000004857) #17	ENSMMMG00000004859 #18	NFKBID (ENSMMMG00000004871) #19	APLP1 (ENSMMMG00000004933) #20	KIRREL2 (ENSMMMG00000005102) #21	NPHS1 (ENSMMMG00000005140) #22	PRODH2 (ENSMMMG00000005262) #23	ENSMMMG00000005289 #24	ENSMMMG00000005308 #25	ENSMMMG00000005321 #26	PROSER3 (ENSMMMG00000005355) #27	HSPB6 (ENSMMMG00000005416) #28	LIN37 (ENSMMMG00000005423) #29	PSENEN (ENSMMMG00000005456) #30	ENSMMMG00000005467 #31	IGFLR1 (ENSMMMG00000005530) #32	KMT2B (ENSMMMG00000005534) #33	ZBTB32 (ENSMMMG00000005625) #34	UPK1A (ENSMMMG00000005648) #35	COX6B1 (ENSMMMG00000005664) #36	ETV2 (ENSMMMG00000005681) #37
Marmotini_b	ANCESTRAL SPECIES	50	ENSGT00940000156119 #7	ENSGT00550000075063 #8	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000163335 #11	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00390000015123.a #24	ENSGT00940000155110.c #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00950000183152.B.c.b #31	ENSGT00390000005702 #32	ENSGT00940000161496 #33	ENSGT00940000162716 #34	ENSGT00940000160881 #35	ENSGT00940000156204.l #36	ENSGT00940000162407 #37	ENSGT00930000151055
Arctic ground squirrel	MODERN SPECIES	724	TBCB (ENSUPAG00010014222) #7	POLR2I (ENSUPAG00010014217) #8	OVOL3 (ENSUPAG00010014215) #9	WDR62 (ENSUPAG00010012592) #10	THAP8 (ENSUPAG00010012561) #11	CLIP3 (ENSUPAG00010012548) #12	ALKBH6 (ENSUPAG00010012536) #13	SYNE4 (ENSUPAG00010012498) #14	SDHAF1 (ENSUPAG00010012492) #15	LRFN3 (ENSUPAG00010012473) #16	TYROBP (ENSUPAG00010012463) #17	HCST (ENSUPAG00010012456) #18	NFKBID (ENSUPAG00010012437) #19	APLP1 (ENSUPAG00010012399) #20	KIRREL2 (ENSUPAG00010012374) #21	NPHS1 (ENSUPAG00010012275) #22	PRODH2 (ENSUPAG00010012259) #23	ENSUPAG00010012246 #24	ARHGAP33 (ENSUPAG00010012016) #26	PROSER3 (ENSUPAG00010011991) #27	HSPB6 (ENSUPAG00010011981) #28	LIN37 (ENSUPAG00010011973) #29	ENSUPAG00010011969 #30	ENSUPAG00010011932 #31	IGFLR1 (ENSUPAG00010011909) #32	KMT2B (ENSUPAG00010011832) #33	ZBTB32 (ENSUPAG00010011817) #34	UPK1A (ENSUPAG00010011797) #35	COX6B1 (ENSUPAG00010011786) #36	ETV2 (ENSUPAG00010011776) #37	RBM42 (ENSUPAG00010011753)
Squirrel	MODERN SPECIES	170						ENSSTOG00000030332	HGSNAT (ENSSTOG00000027544)	POMK (ENSSTOG00000006793)	ENSSTOG00000011626	LRFN3 (ENSSTOG00000007010) #16	TYROBP (ENSSTOG00000024892) #17	HCST (ENSSTOG00000031915) #18	NFKBID (ENSSTOG00000020752) #19	APLP1 (ENSSTOG00000026248) #20	KIRREL2 (ENSSTOG00000027037) #21	NPHS1 (ENSSTOG00000015940) #22	PRODH2 (ENSSTOG00000020884) #23	ARHGAP33 (ENSSTOG00000004685) #26	PROSER3 (ENSSTOG00000029163) #27	HSPB6 (ENSSTOG00000009121) #28	LIN37 (ENSSTOG00000019560) #29	PSENEN (ENSSTOG00000024185) #30	U2AF1L4 (ENSSTOG00000000884) #31	ENSSTOG00000000881 #32	KMT2B (ENSSTOG00000027453) #33	ENSSTOG00000021374	UPK1A (ENSSTOG00000024409) #35	COX6B1 (ENSSTOG00000030918) #36	ENSSTOG00000013057 #37	RBM42 (ENSSTOG00000013050)	HAUS5 (ENSSTOG00000013031)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005014158 #7	POLR2I (ENSSVLG00005014099) #8	OVOL3 (ENSSVLG00005013982) #9	WDR62 (ENSSVLG00005013881) #10	THAP8 (ENSSVLG00005013818) #11	CLIP3 (ENSSVLG00005013705) #12	ALKBH6 (ENSSVLG00005013623) #13	SYNE4 (ENSSVLG00005013556) #14	SDHAF1 (ENSSVLG00005013455) #15	LRFN3 (ENSSVLG00005013381) #16	TYROBP (ENSSVLG00005013303) #17	HCST (ENSSVLG00005013191) #18	NFKBID (ENSSVLG00005013125) #19	APLP1 (ENSSVLG00005012980) #20	KIRREL2 (ENSSVLG00005012347) #21	NPHS1 (ENSSVLG00005011571) #22	PRODH2 (ENSSVLG00005011372) #23	ENSSVLG00005011252 #24	ARHGAP33 (ENSSVLG00005010997) #26	ENSSVLG00005010841 #27	HSPB6 (ENSSVLG00005010780) #28	LIN37 (ENSSVLG00005010739) #29	PSENEN (ENSSVLG00005010696) #30	U2AF1L4 (ENSSVLG00005010572) #31	ENSSVLG00005010528 #32	KMT2B (ENSSVLG00005010126) #33	ZBTB32 (ENSSVLG00005010042) #34	UPK1A (ENSSVLG00005009967) #35	ENSSVLG00005009927 #36	ETV2 (ENSSVLG00005009801) #37	RBM42 (ENSSVLG00005009469)
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000163335 #11	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT01080000257620	ENSGT00860000135857	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00390000015123.a #24	ENSGT00940000155110 #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00390000005702 #32	ENSGT00940000161496 #33	ENSGT00940000162716 #34	ENSGT00940000160881 #35	ENSGT00940000156204 #36	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00550000075063 #8	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT01080000257620	ENSGT00860000135857	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00940000155110 #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00390000005702 #32	ENSGT00940000161496 #33	ENSGT00940000160881 #35	ENSGT00940000156204 #36	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646	ENSGT00940000160676	ENSGT00940000153657.B
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000155478	ENSGT00940000156119 #7	ENSGT00550000075063 #8	ENSGT00940000162348 #9	ENSGT00940000160719 #10	ENSGT00940000159557 #12	ENSGT00510000048626 #13	ENSGT00510000049061 #14	ENSGT00940000157289.b #15	ENSGT00940000161203 #16	ENSGT00390000016786 #17	ENSGT00390000012777 #18	ENSGT00940000153695.C #19	ENSGT00530000063252.b #20	ENSGT00940000160603 #21	ENSGT00940000159510 #22	ENSGT00390000006265.a #23	ENSGT00940000155110 #26	ENSGT00390000001986 #27	ENSGT00940000161100 #28	ENSGT00390000002748 #29	ENSGT00390000016319 #30	ENSGT00940000161496 #33	ENSGT00940000160881 #35	ENSGT00940000156204 #36	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646	ENSGT00940000160676	ENSGT00940000153657.B	ENSGT00940000159100
Long-tailed chinchilla	MODERN SPECIES	175	CAPNS1 (ENSCLAG00000013398)	TBCB (ENSCLAG00000015565) #7	POLR2I (ENSCLAG00000011800) #8	OVOL3 (ENSCLAG00000012345) #9	WDR62 (ENSCLAG00000010013) #10	CLIP3 (ENSCLAG00000016041) #12	ALKBH6 (ENSCLAG00000014273) #13	SYNE4 (ENSCLAG00000016485) #14	SDHAF1 (ENSCLAG00000018050) #15	LRFN3 (ENSCLAG00000012656) #16	TYROBP (ENSCLAG00000012735) #17	HCST (ENSCLAG00000015687) #18	NFKBID (ENSCLAG00000012188) #19	APLP1 (ENSCLAG00000014027) #20	KIRREL2 (ENSCLAG00000012389) #21	NPHS1 (ENSCLAG00000016799) #22	PRODH2 (ENSCLAG00000015709) #23	ARHGAP33 (ENSCLAG00000015653) #26	PROSER3 (ENSCLAG00000011579) #27	HSPB6 (ENSCLAG00000010884) #28	LIN37 (ENSCLAG00000011722) #29	PSENEN (ENSCLAG00000014972) #30	KMT2B (ENSCLAG00000012114) #33	ENSCLAG00000014824	UPK1A (ENSCLAG00000013579) #35	COX6B1 (ENSCLAG00000014823) #36	LRP3 (ENSCLAG00000011669)	SLC7A10 (ENSCLAG00000015288)	CEBPA (ENSCLAG00000010794)	CEBPG (ENSCLAG00000011142)	PEPD (ENSCLAG00000013269)
Degu	MODERN SPECIES	124	COX7A1 (ENSODEG00000015185)	ENSODEG00000015177	ENSODEG00000015989 #7	ENSODEG00000015015 #8	OVOL3 (ENSODEG00000015130) #9	WDR62 (ENSODEG00000015058) #10	CLIP3 (ENSODEG00000015449) #12	ALKBH6 (ENSODEG00000015515) #13	SYNE4 (ENSODEG00000015197) #14	SDHAF1 (ENSODEG00000020265) #15	LRFN3 (ENSODEG00000015149) #16	TYROBP (ENSODEG00000015961) #17	NFKBID (ENSODEG00000015317) #19	APLP1 (ENSODEG00000015942) #20	KIRREL2 (ENSODEG00000014834) #21	NPHS1 (ENSODEG00000015475) #22	PRODH2 (ENSODEG00000014603) #23	ARHGAP33 (ENSODEG00000015228) #26	ENSODEG00000015182 #27	HSPB6 (ENSODEG00000016136) #28	LIN37 (ENSODEG00000015303) #29	PSENEN (ENSODEG00000015490) #30	KMT2B (ENSODEG00000014424) #33	ENSODEG00000014837	UPK1A (ENSODEG00000014934) #35	COX6B1 (ENSODEG00000014806) #36	ENSODEG00000020284	LRP3 (ENSODEG00000015710)	SLC7A10 (ENSODEG00000014633)	PEPD (ENSODEG00000014789)	CHST8 (ENSODEG00000014339)
Guinea pig	MODERN SPECIES	52	CAPNS1 (ENSCPOG00000037019)	TBCB (ENSCPOG00000012098) #7	POLR2I (ENSCPOG00000012097) #8	OVOL3 (ENSCPOG00000012093) #9	WDR62 (ENSCPOG00000012080) #10	CLIP3 (ENSCPOG00000012068) #12	ALKBH6 (ENSCPOG00000035954) #13	SYNE4 (ENSCPOG00000012062) #14	ENSCPOG00000012072	ENSCPOG00000038967	LRFN3 (ENSCPOG00000024958) #16	TYROBP (ENSCPOG00000020175) #17	NFKBID (ENSCPOG00000013678) #19	APLP1 (ENSCPOG00000006702) #20	KIRREL2 (ENSCPOG00000006694) #21	NPHS1 (ENSCPOG00000006685) #22	ENSCPOG00000033069 #23	ARHGAP33 (ENSCPOG00000019450) #26	HSPB6 (ENSCPOG00000032854) #28	LIN37 (ENSCPOG00000003730) #29	PSENEN (ENSCPOG00000035743) #30	IGFLR1 (ENSCPOG00000003725) #32	KMT2B (ENSCPOG00000003718) #33	ENSCPOG00000030326	UPK1A (ENSCPOG00000003519) #35	COX6B1 (ENSCPOG00000040146) #36	LRP3 (ENSCPOG00000013712)	SLC7A10 (ENSCPOG00000040440)	ENSCPOG00000023297	PEPD (ENSCPOG00000014494)	CHST8 (ENSCPOG00000000793)
Naked mole-rat female	MODERN SPECIES	20	TBCB (ENSHGLG00000008350) #7	POLR2I (ENSHGLG00000007388) #8	OVOL3 (ENSHGLG00000006677) #9	WDR62 (ENSHGLG00000011478) #10	THAP8 (ENSHGLG00000038007) #11	CLIP3 (ENSHGLG00000009452) #12	ALKBH6 (ENSHGLG00000008091) #13	SYNE4 (ENSHGLG00000005695) #14	SDHAF1 (ENSHGLG00000046969) #15	LRFN3 (ENSHGLG00000010672) #16	TYROBP (ENSHGLG00000008483) #17	ENSHGLG00000038252	NFKBID (ENSHGLG00000036369) #19	APLP1 (ENSHGLG00000017091) #20	KIRREL2 (ENSHGLG00000013425) #21	NPHS1 (ENSHGLG00000017771) #22	PRODH2 (ENSHGLG00000017286) #23	ENSHGLG00000041563 #24	ARHGAP33 (ENSHGLG00000007897) #26	PROSER3 (ENSHGLG00000006503) #27	HSPB6 (ENSHGLG00000013872) #28	LIN37 (ENSHGLG00000017906) #29	PSENEN (ENSHGLG00000045078) #30	ENSHGLG00000018714 #32	KMT2B (ENSHGLG00000015062) #33	ENSHGLG00000050908	ZBTB32 (ENSHGLG00000015654) #34	UPK1A (ENSHGLG00000015606) #35	ENSHGLG00000015135 #36	ENSHGLG00000015213	ENSHGLG00000015188