Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b #7	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT01050000245777	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296 #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b #7	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT01050000245777	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296 #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a.xb #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Marmotini	ANCESTRAL SPECIES	2	ENSGT00950000182984.b.a.b #7	ENSGT00940000158041.f #9	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT01050000245777	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296 #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a.xb.a #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00950000182984.b.a.b #7	ENSGT00940000158041.f #9	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT01050000245777	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296 #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a.xb.a #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Squirrel	MODERN SPECIES	109	TLK1 (ENSSTOG00000015694) #7	ENSSTOG00000026404 #8	ENSSTOG00000022641 #9	METTL8 (ENSSTOG00000008451) #10	DCAF17 (ENSSTOG00000008475) #11	CYBRD1 (ENSSTOG00000023035) #12	DYNC1I2 (ENSSTOG00000009040) #13	SLC25A12 (ENSSTOG00000007698) #14	HAT1 (ENSSTOG00000012940) #15	METAP1D (ENSSTOG00000012954) #16	DLX1 (ENSSTOG00000012969) #17	DLX2 (ENSSTOG00000019803) #18	ITGA6 (ENSSTOG00000006442) #19	PDK1 (ENSSTOG00000006473) #20	RAPGEF4 (ENSSTOG00000001706) #21	MAP3K20 (ENSSTOG00000022529) #22	ENSSTOG00000009026 #23	SP3 (ENSSTOG00000023955) #24	OLA1 (ENSSTOG00000015547) #25	CIR1 (ENSSTOG00000001233) #26	SCRN3 (ENSSTOG00000001236) #27	GPR155 (ENSSTOG00000001239) #28	ENSSTOG00000004271 #29	CHRNA1 (ENSSTOG00000004281) #30	CHN1 (ENSSTOG00000004301) #31	ATF2 (ENSSTOG00000014079) #32	ENSSTOG00000013572 #33	LNPK (ENSSTOG00000014498) #34	EVX2 (ENSSTOG00000014512) #35	HOXD13 (ENSSTOG00000004117) #36	HOXD12 (ENSSTOG00000004918) #37
Arctic ground squirrel	MODERN SPECIES	69	TLK1 (ENSUPAG00010010088) #7	ENSUPAG00010010158 #9	METTL8 (ENSUPAG00010010169) #10	DCAF17 (ENSUPAG00010010203) #11	CYBRD1 (ENSUPAG00010010276) #12	ENSUPAG00010010279	DYNC1I2 (ENSUPAG00010010286) #13	SLC25A12 (ENSUPAG00010010683) #14	HAT1 (ENSUPAG00010010712) #15	METAP1D (ENSUPAG00010010729) #16	DLX1 (ENSUPAG00010010747) #17	DLX2 (ENSUPAG00010010756) #18	ITGA6 (ENSUPAG00010010765) #19	PDK1 (ENSUPAG00010010801) #20	RAPGEF4 (ENSUPAG00010010823) #21	MAP3K20 (ENSUPAG00010010879) #22	CDCA7 (ENSUPAG00010010913) #23	ENSUPAG00010010922	SP3 (ENSUPAG00010010925) #24	OLA1 (ENSUPAG00010011018) #25	SP9 (ENSUPAG00010011063)
Alpin marmot	MODERN SPECIES	5	TLK1 (ENSMMMG00000023591) #7	ENSMMMG00000023593 #9	METTL8 (ENSMMMG00000023595) #10	DCAF17 (ENSMMMG00000023604) #11	ENSMMMG00000023622 #12	ENSMMMG00000023623	DYNC1I2 (ENSMMMG00000023624) #13	ENSMMMG00000023651	HAT1 (ENSMMMG00000023652) #15	METAP1D (ENSMMMG00000023656) #16	DLX1 (ENSMMMG00000023657) #17	DLX2 (ENSMMMG00000023658) #18	ITGA6 (ENSMMMG00000023663) #19	PDK1 (ENSMMMG00000023665) #20	RAPGEF4 (ENSMMMG00000023674) #21	MAP3K20 (ENSMMMG00000023687) #22	CDCA7 (ENSMMMG00000023690) #23	SP3 (ENSMMMG00000023692) #24	OLA1 (ENSMMMG00000023695) #25	CIR1 (ENSMMMG00000023697) #26	ENSMMMG00000023700 #27	ENSMMMG00000023702 #27	GPR155 (ENSMMMG00000023705) #28	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #29	CHRNA1 (ENSMMMG00000023717) #30	CHN1 (ENSMMMG00000023718) #31	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #32	ENSMMMG00000023748 #33	LNPK (ENSMMMG00000023755) #34
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b #7	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296.t #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000046310	DCAF17 (ENSHGLG00000011952) #11	CYBRD1 (ENSHGLG00000034556) #12	DYNC1I2 (ENSHGLG00000018773) #13	SLC25A12 (ENSHGLG00000016014) #14	HAT1 (ENSHGLG00000006082) #15	DLX1 (ENSHGLG00000008870) #17	DLX2 (ENSHGLG00000043242) #18	ENSHGLG00000033603	ITGA6 (ENSHGLG00000010983) #19	ENSHGLG00000038370	PDK1 (ENSHGLG00000044084) #20	ENSHGLG00000034511	RAPGEF4 (ENSHGLG00000004731) #21	ENSHGLG00000007599	MAP3K20 (ENSHGLG00000003563) #22	CDCA7 (ENSHGLG00000004119) #23	ENSHGLG00000033114	ENSHGLG00000033105	ENSHGLG00000001810	SP3 (ENSHGLG00000007831) #24	ENSHGLG00000006618 #25	ENSHGLG00000046967	ENSHGLG00000040018	SP9 (ENSHGLG00000007443)	CIR1 (ENSHGLG00000008097) #26	SCRN3 (ENSHGLG00000010172) #27	GPR155 (ENSHGLG00000012529) #28	ENSHGLG00000036822 #29	ENSHGLG00000039411 #29	CHRNA1 (ENSHGLG00000015432) #30
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b #7	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296.t #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Guinea pig	MODERN SPECIES	3	GAD1 (ENSCPOG00000004156)	GORASP2 (ENSCPOG00000030781)	TLK1 (ENSCPOG00000004161) #7	METTL8 (ENSCPOG00000037529) #10	DCAF17 (ENSCPOG00000013459) #11	CYBRD1 (ENSCPOG00000020281) #12	DYNC1I2 (ENSCPOG00000014814) #13	SLC25A12 (ENSCPOG00000014818) #14	HAT1 (ENSCPOG00000001837) #15	METAP1D (ENSCPOG00000004553) #16	DLX1 (ENSCPOG00000040135) #17	DLX2 (ENSCPOG00000040000) #18	ITGA6 (ENSCPOG00000008418) #19	PDK1 (ENSCPOG00000008434) #20	RAPGEF4 (ENSCPOG00000010605) #21	MAP3K20 (ENSCPOG00000040705) #22	CDCA7 (ENSCPOG00000011784) #23	SP3 (ENSCPOG00000002942) #24	OLA1 (ENSCPOG00000031110) #25	SP9 (ENSCPOG00000032651)	CIR1 (ENSCPOG00000010275) #26	SCRN3 (ENSCPOG00000010281) #27	GPR155 (ENSCPOG00000010286) #28	ENSCPOG00000034131 #29	CHRNA1 (ENSCPOG00000000036) #30	ENSCPOG00000002789 #31	ATF2 (ENSCPOG00000004637) #32	ATP5MC3 (ENSCPOG00000040161) #33	LNPK (ENSCPOG00000010971) #34	EVX2 (ENSCPOG00000006711) #35	HOXD13 (ENSCPOG00000006722) #36
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b #7	ENSGT00940000159683 #10	ENSGT00390000012728 #11	ENSGT00950000183197.b.b #12	ENSGT00940000155442 #13	ENSGT00940000155963 #14	ENSGT00390000007069 #15	ENSGT00940000157735 #16	ENSGT00940000160029 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304	ENSGT00730000111135 #26	ENSGT00390000013474.a #27	ENSGT00390000004153 #28	ENSGT00910000144296.t #29	ENSGT00940000156851 #30	ENSGT01030000234635.a.b.a.b.b.a.a #31	ENSGT00940000156582 #32	ENSGT00940000154298.a.a #33	ENSGT00390000001859 #34	ENSGT00940000161025 #35	ENSGT00940000161457 #36
Degu	MODERN SPECIES	106	ENSODEG00000019828	METTL8 (ENSODEG00000010652) #10	DCAF17 (ENSODEG00000010610) #11	CYBRD1 (ENSODEG00000010375) #12	DYNC1I2 (ENSODEG00000010272) #13	ENSODEG00000009716 #14	ENSODEG00000010259 #15	METAP1D (ENSODEG00000013584) #16	DLX1 (ENSODEG00000009183) #17	DLX2 (ENSODEG00000009317) #18	ENSODEG00000010482	ENSODEG00000009781	ITGA6 (ENSODEG00000010571) #19	PDK1 (ENSODEG00000010359) #20	RAPGEF4 (ENSODEG00000010386) #21	ENSODEG00000009783 #22	CDCA7 (ENSODEG00000009927) #23	SP3 (ENSODEG00000008679) #24	ENSODEG00000019637	ENSODEG00000010224	OLA1 (ENSODEG00000009011) #25	SP9 (ENSODEG00000009569)	CIR1 (ENSODEG00000009325) #26	ENSODEG00000009961 #27	GPR155 (ENSODEG00000009263) #28	ENSODEG00000008878 #29	ENSODEG00000008975 #29	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #30	CHN1 (ENSODEG00000008560) #31	ATF2 (ENSODEG00000010947) #32