Chordata	ANCESTRAL SPECIES																	ENSGT00940000161352 #22
Vertebrata	ANCESTRAL SPECIES	703																ENSGT00940000161352 #22	ENSGT00940000155436 #23
Gnathostomata	ANCESTRAL SPECIES	56						ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000157735 #15	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT00940000156582 #34	ENSGT00940000165581	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938
Euteleostomi	ANCESTRAL SPECIES	3	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Sarcopterygii	ANCESTRAL SPECIES	15	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Mammalia	ANCESTRAL SPECIES	6	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Theria	ANCESTRAL SPECIES	5	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Eutheria	ANCESTRAL SPECIES	10	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000012818.o.a.a.a.a.c.a #12	ENSGT00950000183000.c.a.a.i.b #13	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.e #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.j #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000171387	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000012818.o.a.a.a.a.c.a #12	ENSGT00950000183000.c.a.a.i.b #13	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.e #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.j #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000171387	ENSGT00390000004755.tb.a.a #31	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000012728 #7	ENSGT01090000260432 #9	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000012818.o.a.a.a.a.c.a #12	ENSGT00950000183000.c.a.a.i.b #13	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.e #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.j #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000171387	ENSGT00390000004755.tb.a.a #31	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000012728 #7	ENSGT01090000260432 #9	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000012818.o.a.a.a.a.c.a #12	ENSGT00950000183000.c.a.a.i.b #13	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.e #23	ENSGT00940000154733.b.d	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.j #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000171387	ENSGT00390000004755.tb.a.a #31	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000008142.t #36
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000012818.o.a.a.a.a.c.a #12	ENSGT00950000183000.c.a.a.i.b #13	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.e #23	ENSGT00940000154733.b.d	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.j #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000171387	ENSGT00390000004755.tb.a.a #31	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000008142.t #36
Beluga whale	MODERN SPECIES	84	DCAF17 (ENSDLEG00000018326) #7	CYBRD1 (ENSDLEG00000018339) #8	ENSDLEG00000018346 #9	DYNC1I2 (ENSDLEG00000018355) #10	SLC25A12 (ENSDLEG00000018434) #11	ENSDLEG00000018507 #12	ENSDLEG00000018516 #13	HAT1 (ENSDLEG00000018529) #14	METAP1D (ENSDLEG00000018535) #15	DLX1 (ENSDLEG00000018542) #16	ENSDLEG00000018548 #17	DLX2 (ENSDLEG00000018558) #18	ITGA6 (ENSDLEG00000018571) #19	PDK1 (ENSDLEG00000018634) #20	RAPGEF4 (ENSDLEG00000018653) #21	MAP3K20 (ENSDLEG00000018716) #22	CDCA7 (ENSDLEG00000018739) #23	SP3 (ENSDLEG00000018847) #24	OLA1 (ENSDLEG00000018856) #25	SP9 (ENSDLEG00000008102) #26	CIR1 (ENSDLEG00000008125) #27	SCRN3 (ENSDLEG00000008164) #28	GPR155 (ENSDLEG00000008209) #29	WIPF1 (ENSDLEG00000008289) #30	ENSDLEG00000008360 #31	CHRNA1 (ENSDLEG00000008433) #32	CHN1 (ENSDLEG00000008654) #33	ATF2 (ENSDLEG00000008726) #34	ATP5G3 (ENSDLEG00000008800) #35	ENSDLEG00000008837 #36	ENSDLEG00000008854 #37
Narwhal	MODERN SPECIES	302	CYBRD1 (ENSMMNG00015009256) #8	ENSMMNG00015009246	DYNC1I2 (ENSMMNG00015009210) #10	ENSMMNG00015009185 #12	SLC25A12 (ENSMMNG00015009167) #11	ENSMMNG00015009153 #13	HAT1 (ENSMMNG00015009142) #14	METAP1D (ENSMMNG00015009122) #15	DLX1 (ENSMMNG00015009101) #16	ENSMMNG00015009095 #17	DLX2 (ENSMMNG00015009086) #18	ITGA6 (ENSMMNG00015008998) #19	PDK1 (ENSMMNG00015008933) #20	RAPGEF4 (ENSMMNG00015008722) #21	ENSMMNG00015008551	MAP3K20 (ENSMMNG00015008529) #22	CDCA7 (ENSMMNG00015008456) #23	ENSMMNG00015008402	SP3 (ENSMMNG00015008383) #24	OLA1 (ENSMMNG00015008339) #25	SP9 (ENSMMNG00015008313) #26	CIR1 (ENSMMNG00015008295) #27	SCRN3 (ENSMMNG00015008267) #28	GPR155 (ENSMMNG00015008223) #29	ENSMMNG00015008159	ENSMMNG00015008133 #31	CHRNA1 (ENSMMNG00015008057) #32	CHN1 (ENSMMNG00015007913) #33	ATF2 (ENSMMNG00015007777) #34	ATP5MC3 (ENSMMNG00015007729) #35	ENSMMNG00015007699 #36
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	3	FBXL4 (ENSPSNG00000017467)	POU3F2 (ENSPSNG00000017509)	MMS22L (ENSPSNG00000017548)	KLHL32 (ENSPSNG00000004483)	NDUFAF4 (ENSPSNG00000004520)	GPR63 (ENSPSNG00000004544)	FHL5 (ENSPSNG00000004559)	UFL1 (ENSPSNG00000004593)	ENSPSNG00000004641	FUT9 (ENSPSNG00000004680)	MANEA (ENSPSNG00000004706)	ENSPSNG00000004826	EPHA7 (ENSPSNG00000004863)	ENSPSNG00000004891	ENSPSNG00000004923	ENSPSNG00000004983 #22	BACH2 (ENSPSNG00000005033)	CASP8AP2 (ENSPSNG00000005060)	GJA10 (ENSPSNG00000005086)	MDN1 (ENSPSNG00000005154)	LYRM2 (ENSPSNG00000005242)	ANKRD6 (ENSPSNG00000005304)	RRAGD (ENSPSNG00000005377)	ENSPSNG00000005417	UBE2J1 (ENSPSNG00000005444)	GABRR2 (ENSPSNG00000005480)	GABRR1 (ENSPSNG00000005535)	PM20D2 (ENSPSNG00000005581)	SRSF12 (ENSPSNG00000005611)	ENSPSNG00000005630	RNGTT (ENSPSNG00000005674)
Vaquita	MODERN SPECIES	18	TLK1 (ENSPSNG00000009910)	ENSPSNG00000009814	DCAF17 (ENSPSNG00000009727) #7	ENSPSNG00000009699 #9	CYBRD1 (ENSPSNG00000009600) #8	DYNC1I2 (ENSPSNG00000009455) #10	ENSPSNG00000009344 #12	SLC25A12 (ENSPSNG00000009280) #11	ENSPSNG00000009142 #13	HAT1 (ENSPSNG00000008992) #14	ENSPSNG00000008924 #16	DLX2 (ENSPSNG00000008884) #18	ITGA6 (ENSPSNG00000008772) #19	PDK1 (ENSPSNG00000008677) #20	RAPGEF4 (ENSPSNG00000007440) #21	MAP3K20 (ENSPSNG00000007117) #22	CDCA7 (ENSPSNG00000007031) #23	ENSPSNG00000006879	SP3 (ENSPSNG00000006849) #24	OLA1 (ENSPSNG00000006756) #25	SP9 (ENSPSNG00000006701) #26	CIR1 (ENSPSNG00000006675) #27	SCRN3 (ENSPSNG00000006611) #28	ENSPSNG00000006580 #29	ENSPSNG00000006539	CHRNA1 (ENSPSNG00000006481) #32	CHN1 (ENSPSNG00000006315) #33	ATF2 (ENSPSNG00000006111) #34	ATP5MC3 (ENSPSNG00000006024) #35	ENSPSNG00000005869 #36	ENSPSNG00000005846
Dolphin	MODERN SPECIES	5055																MAP3K20 (ENSTTRG00000015389) #22
Sperm whale	MODERN SPECIES	11	DCAF17 (ENSPCTG00005004120) #7	CYBRD1 (ENSPCTG00005004148) #8	ENSPCTG00005004165 #9	DYNC1I2 (ENSPCTG00005004190) #10	SLC25A12 (ENSPCTG00005004250) #11	ENSPCTG00005004275 #12	HAT1 (ENSPCTG00005004293) #14	METAP1D (ENSPCTG00005004315) #15	DLX1 (ENSPCTG00005004349) #16	DLX2 (ENSPCTG00005004370) #18	ENSPCTG00005004396	ENSPCTG00005004407	ITGA6 (ENSPCTG00005004439) #19	PDK1 (ENSPCTG00005004583) #20	RAPGEF4 (ENSPCTG00005004714) #21	MAP3K20 (ENSPCTG00005005354) #22	ENSPCTG00005005461 #23	SP3 (ENSPCTG00005005593) #24	ENSPCTG00005005615	OLA1 (ENSPCTG00005005654) #25	SP9 (ENSPCTG00005005728) #26	CIR1 (ENSPCTG00005005746) #27	SCRN3 (ENSPCTG00005005779) #28	GPR155 (ENSPCTG00005005831) #29	WIPF1 (ENSPCTG00005005895) #30	ENSPCTG00005005929 #31	CHRNA1 (ENSPCTG00005005965) #32	CHN1 (ENSPCTG00005006263) #33	ATF2 (ENSPCTG00005007004) #34	ATP5MC3 (ENSPCTG00005007202) #35	LNPK (ENSPCTG00005007293)
Blue whale	MODERN SPECIES	18	METTL8 (ENSBMSG00010019895)	DCAF17 (ENSBMSG00010019930) #7	CYBRD1 (ENSBMSG00010020002) #8	ENSBMSG00010020016 #9	DYNC1I2 (ENSBMSG00010020041) #10	SLC25A12 (ENSBMSG00010020114) #11	ENSBMSG00010020149 #12	ENSBMSG00010020156 #13	HAT1 (ENSBMSG00010020171) #14	METAP1D (ENSBMSG00010020196) #15	DLX1 (ENSBMSG00010020208) #16	DLX2 (ENSBMSG00010020236) #18	ITGA6 (ENSBMSG00010020312) #19	PDK1 (ENSBMSG00010020497) #20	RAPGEF4 (ENSBMSG00010020617) #21	MAP3K20 (ENSBMSG00010021088) #22	ENSBMSG00010021109 #23	SP3 (ENSBMSG00010021145) #24	OLA1 (ENSBMSG00010005447) #25	SP9 (ENSBMSG00010005500) #26	CIR1 (ENSBMSG00010005507) #27	SCRN3 (ENSBMSG00010005522) #28	GPR155 (ENSBMSG00010005540) #29	ENSBMSG00010005563 #30	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615) #32	CHN1 (ENSBMSG00010005726) #33	ATF2 (ENSBMSG00010005883) #34	ATP5MC3 (ENSBMSG00010005937) #35	LNPK (ENSBMSG00010005955)	EVX2 (ENSBMSG00010005974)
Pecora	ANCESTRAL SPECIES	24	ENSGT00950000182984.b.a.b	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT01090000260519	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT01090000260519	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT01090000260519	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000154950.l	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00510000046986.x.b.b.c	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT01010000228762	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Rambouillet Sheep	MODERN SPECIES	11	TLK1 (ENSOARG00020002959)	METTL8 (ENSOARG00020002838)	DCAF17 (ENSOARG00020002807) #7	ENSOARG00020002789	CYBRD1 (ENSOARG00020002781) #8	DYNC1I2 (ENSOARG00020002718) #10	SLC25A12 (ENSOARG00020002650) #11	HAT1 (ENSOARG00020002601) #14	METAP1D (ENSOARG00020002564) #15	DLX1 (ENSOARG00020002540) #16	DLX2 (ENSOARG00020002518) #18	ITGA6 (ENSOARG00020002418) #19	PDK1 (ENSOARG00020002345) #20	ENSOARG00020002317	RAPGEF4 (ENSOARG00020001967) #21	MAP3K20 (ENSOARG00020001796) #22	ENSOARG00020001776	ENSOARG00020001769	CDCA7 (ENSOARG00020001710) #23	SP3 (ENSOARG00020001657) #24	ENSOARG00020001636	OLA1 (ENSOARG00020001577) #25	SP9 (ENSOARG00020001556) #26	CIR1 (ENSOARG00020001547) #27	SCRN3 (ENSOARG00020001508) #28	GPR155 (ENSOARG00020001419) #29	ENSOARG00020001367 #30	CHRNA1 (ENSOARG00020001273) #32	ENSOARG00020001229	ENSOARG00020001216	CHN1 (ENSOARG00020000831) #33
Goat	MODERN SPECIES	11	DCAF17 (ENSCHIG00000016595) #7	ENSCHIG00000017874	CYBRD1 (ENSCHIG00000010133) #8	ENSCHIG00000011187	DYNC1I2 (ENSCHIG00000025418) #10	SLC25A12 (ENSCHIG00000007337) #11	HAT1 (ENSCHIG00000010250) #14	METAP1D (ENSCHIG00000005762) #15	DLX1 (ENSCHIG00000014218) #16	DLX2 (ENSCHIG00000024864) #18	ENSCHIG00000010611	ITGA6 (ENSCHIG00000013031) #19	PDK1 (ENSCHIG00000012161) #20	ENSCHIG00000005492	RAPGEF4 (ENSCHIG00000014546) #21	MAP3K20 (ENSCHIG00000015916) #22	CDCA7 (ENSCHIG00000026797) #23	SP3 (ENSCHIG00000024420) #24	OLA1 (ENSCHIG00000024019) #25	ENSCHIG00000021711	SP9 (ENSCHIG00000012561) #26	CIR1 (ENSCHIG00000023936) #27	SCRN3 (ENSCHIG00000010523) #28	GPR155 (ENSCHIG00000024827) #29	ENSCHIG00000009043 #30	CHRNA1 (ENSCHIG00000018272) #32	CHN1 (ENSCHIG00000017514) #33	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #34	ENSCHIG00000018041 #35	LNPK (ENSCHIG00000012313)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT01090000260519	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859	ENSGT00940000161025
Bos	ANCESTRAL SPECIES	6	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT01090000260519	ENSGT00950000183197.b.b #8	ENSGT00390000002517.a.b.b.c.b	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b.`c #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260519	ENSGT00390000002517.a.b.b.c.b	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b.`c #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Wild yak	MODERN SPECIES	97	DCAF17 (ENSBMUG00000002199) #7	ENSBMUG00000002109	CYBRD1 (ENSBMUG00000002091) #8	ENSBMUG00000002087	DYNC1I2 (ENSBMUG00000002038) #10	SLC25A12 (ENSBMUG00000001916) #11	HAT1 (ENSBMUG00000001878) #14	METAP1D (ENSBMUG00000001843) #15	DLX1 (ENSBMUG00000001822) #16	ENSBMUG00000001812 #17	DLX2 (ENSBMUG00000001805) #18	ITGA6 (ENSBMUG00000001668) #19	PDK1 (ENSBMUG00000001319) #20	ENSBMUG00000001298	RAPGEF4 (ENSBMUG00000001060) #21	MAP3K20 (ENSBMUG00000000796) #22	CDCA7 (ENSBMUG00000000682) #23
Domestic yak	MODERN SPECIES	11	METTL8 (ENSBGRG00000008893)	DCAF17 (ENSBGRG00000009157) #7	CYBRD1 (ENSBGRG00000009455) #8	ENSBGRG00000009482	ENSBGRG00000009517	DYNC1I2 (ENSBGRG00000009556) #10	SLC25A12 (ENSBGRG00000009957) #11	HAT1 (ENSBGRG00000010265) #14	METAP1D (ENSBGRG00000010401) #15	DLX1 (ENSBGRG00000010658) #16	DLX2 (ENSBGRG00000010765) #18	ITGA6 (ENSBGRG00000010970) #19	ENSBGRG00000011777	PDK1 (ENSBGRG00000011803) #20	RAPGEF4 (ENSBGRG00000012108) #21	MAP3K20 (ENSBGRG00000013013) #22	CDCA7 (ENSBGRG00000013198) #23	ENSBGRG00000013492	ENSBGRG00000013535	SP3 (ENSBGRG00000013570) #24	ENSBGRG00000013676	ENSBGRG00000013728 #25	SP9 (ENSBGRG00000014139) #26	CIR1 (ENSBGRG00000014162) #27	SCRN3 (ENSBGRG00000014271) #28	GPR155 (ENSBGRG00000014360) #29	ENSBGRG00000014674	ENSBGRG00000014699 #30	CHRNA1 (ENSBGRG00000014839) #32	CHN1 (ENSBGRG00000015101) #33	ATF2 (ENSBGRG00000015648) #34
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT01090000260519	ENSGT00950000183197.b.b #8	ENSGT00390000002517.a.b.b.c.b	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.a.a	ENSGT00390000000673.b.`c #25	ENSGT00940000166167.b	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT01030000234916.g.b
Hybrid Bos Indicus	MODERN SPECIES	11	DCAF17 (ENSBIXG00005026910) #7	ENSBIXG00005026933	ENSBIXG00005004610	CYBRD1 (ENSBIXG00005026983) #8	DYNC1I2 (ENSBIXG00005027153) #10	SLC25A12 (ENSBIXG00005027277) #11	ENSBIXG00005027305	HAT1 (ENSBIXG00005005621) #14	DLX1 (ENSBIXG00005006946) #16	DLX2 (ENSBIXG00005027459) #18	ENSBIXG00005027485	ENSBIXG00005027496	ITGA6 (ENSBIXG00005027649) #19	PDK1 (ENSBIXG00005006953) #20	RAPGEF4 (ENSBIXG00005028149) #21	MAP3K20 (ENSBIXG00005028315) #22	CDCA7 (ENSBIXG00005028490) #23	ENSBIXG00005028515	SP3 (ENSBIXG00005005344) #24	ENSBIXG00005004930	OLA1 (ENSBIXG00005028684) #25	ENSBIXG00005004969	SP9 (ENSBIXG00005002344) #26	CIR1 (ENSBIXG00005005349) #27	SCRN3 (ENSBIXG00005028812) #28	GPR155 (ENSBIXG00005028873) #29	ENSBIXG00005002196 #30	CHRNA1 (ENSBIXG00005028981) #32	CHN1 (ENSBIXG00005001962) #33	ATF2 (ENSBIXG00005001719) #34	ATP5MC3 (ENSBIXG00005029222) #35
Cow	MODERN SPECIES	11	ENSBTAG00000049842	METTL8 (ENSBTAG00000016430)	DCAF17 (ENSBTAG00000007683) #7	ENSBTAG00000053081	CYBRD1 (ENSBTAG00000007898) #8	ENSBTAG00000048244	DYNC1I2 (ENSBTAG00000002646) #10	SLC25A12 (ENSBTAG00000016762) #11	HAT1 (ENSBTAG00000010118) #14	METAP1D (ENSBTAG00000019075) #15	DLX1 (ENSBTAG00000015217) #16	DLX2 (ENSBTAG00000005741) #18	ITGA6 (ENSBTAG00000017266) #19	PDK1 (ENSBTAG00000016836) #20	RAPGEF4 (ENSBTAG00000020984) #21	MAP3K20 (ENSBTAG00000001083) #22	CDCA7 (ENSBTAG00000003458) #23	ENSBTAG00000050579	SP3 (ENSBTAG00000000176) #24	ENSBTAG00000053359	OLA1 (ENSBTAG00000006970) #25	ENSBTAG00000052569	SP9 (ENSBTAG00000014949) #26	CIR1 (ENSBTAG00000038620) #27	SCRN3 (ENSBTAG00000012966) #28	GPR155 (ENSBTAG00000021636) #29	WIPF1 (ENSBTAG00000001585) #30	CHRNA1 (ENSBTAG00000018253) #32	CHN1 (ENSBTAG00000008028) #33	ATF2 (ENSBTAG00000002295) #34	ATP5MC3 (ENSBTAG00000002944) #35
American bison	MODERN SPECIES	3109	METTL8 (ENSBBBG00000005223)	DCAF17 (ENSBBBG00000007670) #7	CYBRD1 (ENSBBBG00000005056) #8	ENSBBBG00000005051	ENSBBBG00000019334	ENSBBBG00000009175	DYNC1I2 (ENSBBBG00000019323) #10	SLC25A12 (ENSBBBG00000019135) #11	HAT1 (ENSBBBG00000009158) #14	METAP1D (ENSBBBG00000019106) #15	DLX1 (ENSBBBG00000019095) #16	DLX2 (ENSBBBG00000019086) #18	ITGA6 (ENSBBBG00000004869) #19	PDK1 (ENSBBBG00000018765) #20	RAPGEF4 (ENSBBBG00000018704) #21	MAP3K20 (ENSBBBG00000018360) #22	CDCA7 (ENSBBBG00000018271) #23	ENSBBBG00000018261
Siberian musk deer	MODERN SPECIES	343		ENSMMSG00000015427	METTL8 (ENSMMSG00000015381)	DCAF17 (ENSMMSG00000015347) #7	ENSMMSG00000015325	CYBRD1 (ENSMMSG00000011186) #8	DYNC1I2 (ENSMMSG00000011051) #10	SLC25A12 (ENSMMSG00000010942) #11	HAT1 (ENSMMSG00000010893) #14	METAP1D (ENSMMSG00000010846) #15	DLX1 (ENSMMSG00000010815) #16	DLX2 (ENSMMSG00000010774) #18	ITGA6 (ENSMMSG00000010565) #19	PDK1 (ENSMMSG00000010486) #20	RAPGEF4 (ENSMMSG00000009106) #21	MAP3K20 (ENSMMSG00000008924) #22	CDCA7 (ENSMMSG00000008759) #23	SP3 (ENSMMSG00000008721) #24	ENSMMSG00000008479 #25	SP9 (ENSMMSG00000008454) #26	CIR1 (ENSMMSG00000008433) #27	SCRN3 (ENSMMSG00000008414) #28	GPR155 (ENSMMSG00000008338) #29	WIPF1 (ENSMMSG00000008255)	ENSMMSG00000008236	CHRNA1 (ENSMMSG00000008178) #32	CHN1 (ENSMMSG00000008149) #33	ENSMMSG00000008131
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000023116	GORASP2 (ENSCHYG00000022923)	TLK1 (ENSCHYG00000022796)	METTL8 (ENSCHYG00000022651)	ENSCHYG00000022536 #7	CYBRD1 (ENSCHYG00000022482) #8	ENSCHYG00000022281 #10	SLC25A12 (ENSCHYG00000021736) #11	HAT1 (ENSCHYG00000021454) #14	DLX1 (ENSCHYG00000021399) #16	ENSCHYG00000021377 #17	DLX2 (ENSCHYG00000021329) #18	ITGA6 (ENSCHYG00000020793) #19	PDK1 (ENSCHYG00000020641) #20	RAPGEF4 (ENSCHYG00000019936) #21	MAP3K20 (ENSCHYG00000019464) #22	ENSCHYG00000019193 #23	SP3 (ENSCHYG00000019030) #24	ENSCHYG00000018536 #25	SP9 (ENSCHYG00000018463) #26	CIR1 (ENSCHYG00000018323) #27	ENSCHYG00000018263 #28	GPR155 (ENSCHYG00000018083) #29	ENSCHYG00000017877 #30	CHRNA1 (ENSCHYG00000017619) #32	ENSCHYG00000017575	CHN1 (ENSCHYG00000017015) #33	ATF2 (ENSCHYG00000016575) #34	ATP5MC3 (ENSCHYG00000016464) #35	ENSCHYG00000016417	ENSCHYG00000016391
Camelidae	ANCESTRAL SPECIES	16	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Arabian camel	MODERN SPECIES	31	GAD1 (ENSCDRG00005000194)	GORASP2 (ENSCDRG00005000247)	TLK1 (ENSCDRG00005000303)	METTL8 (ENSCDRG00005000385)	DCAF17 (ENSCDRG00005000435) #7	CYBRD1 (ENSCDRG00005000465) #8	DYNC1I2 (ENSCDRG00005000523) #10	SLC25A12 (ENSCDRG00005000612) #11	HAT1 (ENSCDRG00005000642) #14	METAP1D (ENSCDRG00005000687) #15	DLX1 (ENSCDRG00005000721) #16	DLX2 (ENSCDRG00005000738) #18	ITGA6 (ENSCDRG00005000778) #19	PDK1 (ENSCDRG00005000974) #20	RAPGEF4 (ENSCDRG00005001089) #21	MAP3K20 (ENSCDRG00005001310) #22	CDCA7 (ENSCDRG00005001429) #23	SP3 (ENSCDRG00005001722) #24	ENSCDRG00005001752 #25	SP9 (ENSCDRG00005001817) #26	CIR1 (ENSCDRG00005001834) #27	SCRN3 (ENSCDRG00005001860) #28	GPR155 (ENSCDRG00005001897) #29	ENSCDRG00005001936	CHRNA1 (ENSCDRG00005001973) #32	CHN1 (ENSCDRG00005002091) #33	ATF2 (ENSCDRG00005002159) #34	ATP5MC3 (ENSCDRG00005002307) #35	LNPK (ENSCDRG00005002325)	EVX2 (ENSCDRG00005002358)	HOXD13 (ENSCDRG00005002411)
Alpaca	MODERN SPECIES	1988								ENSVPAG00000001833 #8	DYNC1I2 (ENSVPAG00000001834) #10	SLC25A12 (ENSVPAG00000001835) #11	HAT1 (ENSVPAG00000001836) #14	METAP1D (ENSVPAG00000001837) #15	ITGA6 (ENSVPAG00000001838) #19	PDK1 (ENSVPAG00000001839) #20	RAPGEF4 (ENSVPAG00000001840) #21	MAP3K20 (ENSVPAG00000001842) #22
Suina	ANCESTRAL SPECIES	3	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.e #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00390000010491.kb.a	ENSGT00940000161025
Pig	MODERN SPECIES	6	METTL8 (ENSSSCG00000015945)	DCAF17 (ENSSSCG00000015947) #7	CYBRD1 (ENSSSCG00000025049) #8	ENSSSCG00000056136	DYNC1I2 (ENSSSCG00000015948) #10	ENSSSCG00000054376	SLC25A12 (ENSSSCG00000015949) #11	HAT1 (ENSSSCG00000015952) #14	METAP1D (ENSSSCG00000015951) #15	DLX1 (ENSSSCG00000015953) #16	DLX2 (ENSSSCG00000015954) #18	ITGA6 (ENSSSCG00000015955) #19	PDK1 (ENSSSCG00000015958) #20	RAPGEF4 (ENSSSCG00000015959) #21	ENSSSCG00000046252	MAP3K20 (ENSSSCG00000015960) #22	CDCA7 (ENSSSCG00000015961) #23	SP3 (ENSSSCG00000015962) #24	OLA1 (ENSSSCG00000015963) #25	ENSSSCG00000044710	SP9 (ENSSSCG00000036172) #26	CIR1 (ENSSSCG00000027516) #27	SCRN3 (ENSSSCG00000023297) #28	GPR155 (ENSSSCG00000015965) #29	ENSSSCG00000027348 #30	CHRNA1 (ENSSSCG00000015969) #32	ENSSSCG00000022345 #33	ATF2 (ENSSSCG00000038076) #34	ATP5MC3 (ENSSSCG00000015973) #35	LNPK (ENSSSCG00000015976)	ENSSSCG00000039002
Chacoan peccary	MODERN SPECIES	88	GORASP2 (ENSCWAG00000008755)	TLK1 (ENSCWAG00000008802)	ENSCWAG00000008875	METTL8 (ENSCWAG00000008925)	DCAF17 (ENSCWAG00000009006) #7	CYBRD1 (ENSCWAG00000009101) #8	DYNC1I2 (ENSCWAG00000009164) #10	SLC25A12 (ENSCWAG00000009470) #11	HAT1 (ENSCWAG00000009603) #14	METAP1D (ENSCWAG00000009763) #15	DLX1 (ENSCWAG00000009780) #16	DLX2 (ENSCWAG00000009801) #18	ITGA6 (ENSCWAG00000009945) #19	PDK1 (ENSCWAG00000011376) #20	RAPGEF4 (ENSCWAG00000011603) #21	MAP3K20 (ENSCWAG00000014376) #22	CDCA7 (ENSCWAG00000014474) #23	SP3 (ENSCWAG00000014875) #24	OLA1 (ENSCWAG00000015018) #25	ENSCWAG00000015225	SP9 (ENSCWAG00000015261) #26	CIR1 (ENSCWAG00000015285) #27	SCRN3 (ENSCWAG00000015324) #28	GPR155 (ENSCWAG00000015434) #29	WIPF1 (ENSCWAG00000000086)	CHRNA1 (ENSCWAG00000000173) #32	CHN1 (ENSCWAG00000000417) #33	ATF2 (ENSCWAG00000000507) #34	ENSCWAG00000000620 #35	LNPK (ENSCWAG00000000637)	ENSCWAG00000000677
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Equus	ANCESTRAL SPECIES	18	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Donkey	MODERN SPECIES	24	GORASP2 (ENSEASG00005022692)	TLK1 (ENSEASG00005022687)	METTL8 (ENSEASG00005022684)	DCAF17 (ENSEASG00005022667) #7	ENSEASG00005022660	CYBRD1 (ENSEASG00005025900) #8	DYNC1I2 (ENSEASG00005022658) #10	HAT1 (ENSEASG00005022647) #14	SLC25A12 (ENSEASG00005022656) #11	METAP1D (ENSEASG00005022644) #15	DLX1 (ENSEASG00005022643) #16	DLX2 (ENSEASG00005022641) #18	ITGA6 (ENSEASG00005022636) #19	PDK1 (ENSEASG00005022633) #20	RAPGEF4 (ENSEASG00005022625) #21	ENSEASG00005022618 #22	ENSEASG00005034775	CDCA7 (ENSEASG00005022615) #23	SP3 (ENSEASG00005022608) #24	OLA1 (ENSEASG00005022603) #25	SP9 (ENSEASG00005022600) #26	CIR1 (ENSEASG00005022598) #27	SCRN3 (ENSEASG00005022597) #28	GPR155 (ENSEASG00005022591) #29	WIPF1 (ENSEASG00005022583)	CHRNA1 (ENSEASG00005022581) #32	CHN1 (ENSEASG00005022579) #33	ATF2 (ENSEASG00005022575) #34	ATP5MC3 (ENSEASG00005022573) #35	LNPK (ENSEASG00005022567)	ENSEASG00005022564
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Felidae	ANCESTRAL SPECIES																	ENSGT00940000161352 #22
Panthera	ANCESTRAL SPECIES																	ENSGT00940000161352 #22
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b.mb.a #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
leopard	MODERN SPECIES	1	GAD1 (ENSPPRG00000000925)	GORASP2 (ENSPPRG00000000627)	TLK1 (ENSPPRG00000022626)	METTL8 (ENSPPRG00000023761)	DCAF17 (ENSPPRG00000023977) #7	CYBRD1 (ENSPPRG00000022504) #8	DYNC1I2 (ENSPPRG00000020631) #10	SLC25A12 (ENSPPRG00000010578) #11	HAT1 (ENSPPRG00000010412) #14	METAP1D (ENSPPRG00000010346) #15	DLX1 (ENSPPRG00000010012) #16	DLX2 (ENSPPRG00000009869) #18	ITGA6 (ENSPPRG00000008496) #19	PDK1 (ENSPPRG00000007221) #20	RAPGEF4 (ENSPPRG00000006832) #21	MAP3K20 (ENSPPRG00000005621) #22	CDCA7 (ENSPPRG00000005021) #23	SP3 (ENSPPRG00000004464) #24	ENSPPRG00000004311	ENSPPRG00000004233 #25	SP9 (ENSPPRG00000003658) #26	CIR1 (ENSPPRG00000003553) #27	SCRN3 (ENSPPRG00000003477) #28	GPR155 (ENSPPRG00000003324) #29	ENSPPRG00000002818	WIPF1 (ENSPPRG00000002779)	CHRNA1 (ENSPPRG00000002357) #32	CHN1 (ENSPPRG00000001854) #33	ATF2 (ENSPPRG00000001271) #34	ATP5MC3 (ENSPPRG00000000490) #35	LNPK (ENSPPRG00000000436)
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Ferret	MODERN SPECIES	173	ENSMPUG00000000816	TLK1 (ENSMPUG00000000818)	METTL8 (ENSMPUG00000000820)	DCAF17 (ENSMPUG00000000822) #7	DYNC1I2 (ENSMPUG00000000825) #10	ENSMPUG00000000830	SLC25A12 (ENSMPUG00000000833) #11	HAT1 (ENSMPUG00000000835) #14	METAP1D (ENSMPUG00000000836) #15	DLX1 (ENSMPUG00000000837) #16	DLX2 (ENSMPUG00000000839) #18	ITGA6 (ENSMPUG00000000840) #19	PDK1 (ENSMPUG00000000845) #20	ENSMPUG00000000847	RAPGEF4 (ENSMPUG00000000854) #21	ENSMPUG00000000860 #22	ENSMPUG00000000863	CDCA7 (ENSMPUG00000000866) #23
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00390000005254.i.a.b	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.m.b #35	ENSGT00390000001859
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000186354	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00390000005254.i.a.b	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.m.b #35	ENSGT00390000001859
American black bear	MODERN SPECIES	173														PDK1 (ENSUAMG00000024277) #20	RAPGEF4 (ENSUAMG00000024101) #21	ENSUAMG00000024097 #22	CDCA7 (ENSUAMG00000024095) #23	ENSUAMG00000024094
Polar bear	MODERN SPECIES	142	GAD1 (ENSUMAG00000014287)	GORASP2 (ENSUMAG00000014316)	TLK1 (ENSUMAG00000014343)	METTL8 (ENSUMAG00000014385)	DCAF17 (ENSUMAG00000014394) #7	ENSUMAG00000014396	CYBRD1 (ENSUMAG00000014399) #8	DYNC1I2 (ENSUMAG00000014430) #10	SLC25A12 (ENSUMAG00000014456) #11	HAT1 (ENSUMAG00000014469) #14	METAP1D (ENSUMAG00000014498) #15	DLX1 (ENSUMAG00000014510) #16	ITGA6 (ENSUMAG00000014604) #19	PDK1 (ENSUMAG00000015250) #20	RAPGEF4 (ENSUMAG00000015328) #21	ENSUMAG00000015337 #22	CDCA7 (ENSUMAG00000015367) #23	ENSUMAG00000015375	SP3 (ENSUMAG00000015395) #24	OLA1 (ENSUMAG00000015410) #25	ENSUMAG00000015413	CIR1 (ENSUMAG00000015415) #27	SCRN3 (ENSUMAG00000015422) #28	GPR155 (ENSUMAG00000015425) #29	ENSUMAG00000015461	ENSUMAG00000015473	CHRNA1 (ENSUMAG00000015480) #32	CHN1 (ENSUMAG00000015511) #33	ATF2 (ENSUMAG00000015564) #34	ATP5MC3 (ENSUMAG00000015579) #35	LNPK (ENSUMAG00000015613)
Canidae	ANCESTRAL SPECIES	45	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.i #35	ENSGT00390000001859	ENSGT00940000161025
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00940000165895	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000175090	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000147479.a.b.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.i #35	ENSGT00390000001859	ENSGT00940000161025
Dingo	MODERN SPECIES	370	PNISR (ENSCAFG00020016765)	COQ3 (ENSCAFG00020016760)	FAXC (ENSCAFG00020016750)	FBXL4 (ENSCAFG00020016742)	POU3F2 (ENSCAFG00020016738)	ENSCAFG00020016728	KLHL32 (ENSCAFG00020016702)	NDUFAF4 (ENSCAFG00020016697)	GPR63 (ENSCAFG00020016694)	FHL5 (ENSCAFG00020016686)	UFL1 (ENSCAFG00020016268)	FUT9 (ENSCAFG00020016261)	ENSCAFG00020016257	ENSCAFG00020016251	EPHA7 (ENSCAFG00020016245)	ENSCAFG00020016241 #22	ENSCAFG00020016240	ENSCAFG00020016238	BACH2 (ENSCAFG00020016233)	GJA10 (ENSCAFG00020016231)	CASP8AP2 (ENSCAFG00020016222)	MDN1 (ENSCAFG00020016117)	LYRM2 (ENSCAFG00020016108)	ANKRD6 (ENSCAFG00020016043)	RRAGD (ENSCAFG00020016028)	UBE2J1 (ENSCAFG00020016018)	GABRR2 (ENSCAFG00020016007)	PM20D2 (ENSCAFG00020016003)	SRSF12 (ENSCAFG00020015999)	ENSCAFG00020015996	RNGTT (ENSCAFG00020015945)
Dog	MODERN SPECIES	29	GAD1 (ENSCAFG00845025996)	GORASP2 (ENSCAFG00845026358)	TLK1 (ENSCAFG00845026655)	METTL8 (ENSCAFG00845027261)	DCAF17 (ENSCAFG00845027361) #7	CYBRD1 (ENSCAFG00845027490) #8	DYNC1I2 (ENSCAFG00845027582) #10	SLC25A12 (ENSCAFG00845028165) #11	HAT1 (ENSCAFG00845028352) #14	METAP1D (ENSCAFG00845028440) #15	DLX1 (ENSCAFG00845028502) #16	ENSCAFG00845028527 #18	ITGA6 (ENSCAFG00845028626) #19	PDK1 (ENSCAFG00845028798) #20	RAPGEF4 (ENSCAFG00845028929) #21	MAP3K20 (ENSCAFG00845029200) #22	ENSCAFG00845029341 #23	SP3 (ENSCAFG00845029530) #24	OLA1 (ENSCAFG00845029594) #25	SP9 (ENSCAFG00845029658) #26	CIR1 (ENSCAFG00845015697) #27	SCRN3 (ENSCAFG00845015754) #28	GPR155 (ENSCAFG00845015821) #29	ENSCAFG00845015883	WIPF1 (ENSCAFG00845016036)	CHRNA1 (ENSCAFG00845016336) #32	CHN1 (ENSCAFG00845017147) #33	ATF2 (ENSCAFG00845017708) #34	ATP5MC3 (ENSCAFG00845018248) #35	ENSCAFG00845018368	LNPK (ENSCAFG00845018510)
Eulipotyphla	ANCESTRAL SPECIES	2252																ENSGT00940000161352 #22	ENSGT00940000155436 #23
Hedgehog	MODERN SPECIES	194																MAP3K20 (ENSEEUG00000003073) #22	CDCA7 (ENSEEUG00000003170) #23
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Tree shrew	MODERN SPECIES	5831															RAPGEF4 (ENSTBEG00000016764) #21	MAP3K20 (ENSTBEG00000017240) #22	CDCA7 (ENSTBEG00000017531) #23
Glires	ANCESTRAL SPECIES	14	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00390000017846	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938	ENSGT00940000161308
Rabbit	MODERN SPECIES	18	GAD1 (ENSOCUG00000012644)	GORASP2 (ENSOCUG00000012669)	TLK1 (ENSOCUG00000012680)	METTL8 (ENSOCUG00000011653)	DCAF17 (ENSOCUG00000013882) #7	CYBRD1 (ENSOCUG00000014820) #8	DYNC1I2 (ENSOCUG00000009944) #10	SLC25A12 (ENSOCUG00000012066) #11	HAT1 (ENSOCUG00000005313) #14	METAP1D (ENSOCUG00000003700) #15	DLX1 (ENSOCUG00000003707) #16	ITGA6 (ENSOCUG00000000403) #19	PDK1 (ENSOCUG00000000408) #20	RAPGEF4 (ENSOCUG00000015032) #21	ENSOCUG00000020911	MAP3K20 (ENSOCUG00000015053) #22	ENSOCUG00000030479	CDCA7 (ENSOCUG00000001759) #23	ENSOCUG00000030823	SP3 (ENSOCUG00000026678) #24	OLA1 (ENSOCUG00000003574) #25	ENSOCUG00000037146	CIR1 (ENSOCUG00000029298) #27	SCRN3 (ENSOCUG00000011499) #28	GPR155 (ENSOCUG00000003683) #29	ENSOCUG00000036607	ENSOCUG00000005696 #30	CHRNA1 (ENSOCUG00000024814) #32	CHN1 (ENSOCUG00000008134) #33	ATF2 (ENSOCUG00000012156) #34	ATP5MC3 (ENSOCUG00000012164) #35
Rodentia	ANCESTRAL SPECIES	14	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Kangaroo rat	MODERN SPECIES	324	Gorasp2 (ENSDORG00000009714)	Tlk1 (ENSDORG00000010695)	Mettl8 (ENSDORG00000013075)	Dcaf17 (ENSDORG00000014440) #7	ENSDORG00000029135	Cybrd1 (ENSDORG00000002233) #8	Dync1i2 (ENSDORG00000015988) #10	Slc25a12 (ENSDORG00000000284) #11	Hat1 (ENSDORG00000010346) #14	ENSDORG00000016597 #15	Dlx1 (ENSDORG00000030117) #16	Dlx2 (ENSDORG00000030062) #18	Itga6 (ENSDORG00000005156) #19	Pdk1 (ENSDORG00000000069) #20	Rapgef4 (ENSDORG00000005529) #21	ENSDORG00000005439 #22	Cdca7 (ENSDORG00000001759) #23	Sp3 (ENSDORG00000009045) #24	ENSDORG00000008681 #25	Sp9 (ENSDORG00000025534) #26	Cir1 (ENSDORG00000013676) #27	ENSDORG00000013682 #28	Gpr155 (ENSDORG00000013683) #29	ENSDORG00000027952	Chrna1 (ENSDORG00000001136) #32	Chn1 (ENSDORG00000002182) #33	Atf2 (ENSDORG00000024409) #34	Atp5g3 (ENSDORG00000012973) #35	Lnpk (ENSDORG00000015736)	Evx2 (ENSDORG00000009432)	Hoxd12 (ENSDORG00000009434)
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Lesser Egyptian jerboa	MODERN SPECIES	75		Gorasp2 (ENSJJAG00000021655)	Tlk1 (ENSJJAG00000017658)	Mettl8 (ENSJJAG00000024352)	Dcaf17 (ENSJJAG00000017182) #7	Cybrd1 (ENSJJAG00000015765) #8	Dync1i2 (ENSJJAG00000022472) #10	Hat1 (ENSJJAG00000017424) #14	Metap1d (ENSJJAG00000012042) #15	Dlx1 (ENSJJAG00000008558) #16	Dlx2 (ENSJJAG00000019163) #18	Itga6 (ENSJJAG00000012292) #19	Pdk1 (ENSJJAG00000020102) #20	ENSJJAG00000015889	Rapgef4 (ENSJJAG00000009830) #21	ENSJJAG00000016192 #22	Cdca7 (ENSJJAG00000014387) #23	Sp3 (ENSJJAG00000011138) #24	ENSJJAG00000022958 #25	Sp9 (ENSJJAG00000020056) #26	Cir1 (ENSJJAG00000010849) #27	Scrn3 (ENSJJAG00000021027) #28	Chrna1 (ENSJJAG00000018710) #32	ENSJJAG00000014124	Chn1 (ENSJJAG00000015001) #33	Atf2 (ENSJJAG00000015836) #34	Atp5g3 (ENSJJAG00000022403) #35	ENSJJAG00000013766	Lnpk (ENSJJAG00000011710)	Evx2 (ENSJJAG00000017484)	Hoxd13 (ENSJJAG00000016388)
Muroidea	ANCESTRAL SPECIES	34	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Gorasp2 (ENSNGAG00000022582)	ENSNGAG00000002431	ENSNGAG00000023622	Mettl8 (ENSNGAG00000023053)	Dcaf17 (ENSNGAG00000018502) #7	Cybrd1 (ENSNGAG00000022040) #8	Dync1i2 (ENSNGAG00000022933) #10	Slc25a12 (ENSNGAG00000013005) #11	Hat1 (ENSNGAG00000019860) #14	ENSNGAG00000004663 #15	Dlx1 (ENSNGAG00000022526) #16	Dlx2 (ENSNGAG00000022793) #18	Itga6 (ENSNGAG00000023769) #19	ENSNGAG00000021913 #20	Rapgef4 (ENSNGAG00000024160) #21	ENSNGAG00000023564 #22	Cdca7 (ENSNGAG00000005943) #23	ENSNGAG00000011265 #24	ENSNGAG00000012551	Ola1 (ENSNGAG00000017639) #25	Sp9 (ENSNGAG00000002858) #26	Cir1 (ENSNGAG00000023091) #27	Scrn3 (ENSNGAG00000008783) #28	Gpr155 (ENSNGAG00000019246) #29	ENSNGAG00000022478	Chrna1 (ENSNGAG00000023534) #32	Chn1 (ENSNGAG00000021893) #33	Atf2 (ENSNGAG00000003870) #34	Atp5g3 (ENSNGAG00000004748) #35	Lnpk (ENSNGAG00000023466)	Evx2 (ENSNGAG00000023877)
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Mus	ANCESTRAL SPECIES	1	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Mus_A	ANCESTRAL SPECIES		ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Mus_B	ANCESTRAL SPECIES	1	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.k #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Mouse	MODERN SPECIES	11	Gad1 (ENSMUSG00000070880)	Gorasp2 (ENSMUSG00000014959)	Tlk1 (ENSMUSG00000041997)	Mettl8 (ENSMUSG00000041975)	Dcaf17 (ENSMUSG00000041966) #7	Cybrd1 (ENSMUSG00000027015) #8	Dync1i2 (ENSMUSG00000027012) #10	Slc25a12 (ENSMUSG00000027010) #11	Hat1 (ENSMUSG00000027018) #14	Metap1d (ENSMUSG00000041921) #15	Dlx1 (ENSMUSG00000041911) #16	Dlx2 (ENSMUSG00000023391) #18	Itga6 (ENSMUSG00000027111) #19	Pdk1 (ENSMUSG00000006494) #20	Rapgef4 (ENSMUSG00000049044) #21	Map3k20 (ENSMUSG00000004085) #22	Cdca7 (ENSMUSG00000055612) #23	Sp3 (ENSMUSG00000027109) #24	Ola1 (ENSMUSG00000027108) #25	Sp9 (ENSMUSG00000068859) #26	Cir1 (ENSMUSG00000041777) #27	Scrn3 (ENSMUSG00000008226) #28	Gpr155 (ENSMUSG00000041762) #29	Wipf1 (ENSMUSG00000075284)	Chrna1 (ENSMUSG00000027107) #32	Chn1 (ENSMUSG00000056486) #33	Atf2 (ENSMUSG00000027104) #34	Atp5g3 (ENSMUSG00000018770) #35	Lnpk (ENSMUSG00000009207)	Evx2 (ENSMUSG00000001815)	Hoxd13 (ENSMUSG00000001819)
Mus_C	ANCESTRAL SPECIES		ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00960000192081 #17	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.k #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Steppe mouse	MODERN SPECIES	3326												ENSMSIG00000008301	Itga6 (ENSMSIG00000008202) #19	Pdk1 (ENSMSIG00000008171) #20	Rapgef4 (ENSMSIG00000007773) #21	Map3k20 (ENSMSIG00000007713) #22	Cdca7 (ENSMSIG00000007687) #23	ENSMSIG00000007399	Sp3 (ENSMSIG00000007322) #24	ENSMSIG00000007310	ENSMSIG00000007302	Ola1 (ENSMSIG00000007200) #25	Sp9 (ENSMSIG00000007182) #26	Cir1 (ENSMSIG00000007130) #27	Scrn3 (ENSMSIG00000007111) #28	Gpr155 (ENSMSIG00000006975) #29	Wipf1 (ENSMSIG00000006899)	Chrna1 (ENSMSIG00000006852) #32	Chn1 (ENSMSIG00000006692) #33	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #34
spretus	MODERN SPECIES	11	Gorasp2 (MGP_SPRETEiJ_G0024559)	Tlk1 (MGP_SPRETEiJ_G0024560)	Mettl8 (MGP_SPRETEiJ_G0024561)	Dcaf17 (MGP_SPRETEiJ_G0024562) #7	Cybrd1 (MGP_SPRETEiJ_G0024563) #8	Dync1i2 (MGP_SPRETEiJ_G0024564) #10	Slc25a12 (MGP_SPRETEiJ_G0024565) #11	Hat1 (MGP_SPRETEiJ_G0024566) #14	MGP_SPRETEiJ_G0024567	Metap1d (MGP_SPRETEiJ_G0024568) #15	Dlx1 (MGP_SPRETEiJ_G0024569) #16	Dlx2 (MGP_SPRETEiJ_G0024570) #18	Itga6 (MGP_SPRETEiJ_G0024571) #19	Pdk1 (MGP_SPRETEiJ_G0024572) #20	Rapgef4 (MGP_SPRETEiJ_G0024573) #21	Map3k20 (MGP_SPRETEiJ_G0024574) #22	Cdca7 (MGP_SPRETEiJ_G0024575) #23	Sp3 (MGP_SPRETEiJ_G0024576) #24	MGP_SPRETEiJ_G0024577	Ola1 (MGP_SPRETEiJ_G0024578) #25	Sp9 (MGP_SPRETEiJ_G0024579) #26	Cir1 (MGP_SPRETEiJ_G0024580) #27	Scrn3 (MGP_SPRETEiJ_G0024581) #28	Gpr155 (MGP_SPRETEiJ_G0024582) #29	Wipf1 (MGP_SPRETEiJ_G0024583)	Chrna1 (MGP_SPRETEiJ_G0024584) #32	Chn1 (MGP_SPRETEiJ_G0024585) #33	Atf2 (MGP_SPRETEiJ_G0024586) #34	Atp5g3 (MGP_SPRETEiJ_G0024587) #35	Lnpk (MGP_SPRETEiJ_G0024588)	Evx2 (MGP_SPRETEiJ_G0024589)
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0023636	Gorasp2 (MGP_CAROLIEiJ_G0023637)	Tlk1 (MGP_CAROLIEiJ_G0023638)	Mettl8 (MGP_CAROLIEiJ_G0023639)	Dcaf17 (MGP_CAROLIEiJ_G0023640) #7	Cybrd1 (MGP_CAROLIEiJ_G0023641) #8	Dync1i2 (MGP_CAROLIEiJ_G0023642) #10	Slc25a12 (MGP_CAROLIEiJ_G0023643) #11	Hat1 (MGP_CAROLIEiJ_G0023644) #14	Metap1d (MGP_CAROLIEiJ_G0023645) #15	Dlx1 (MGP_CAROLIEiJ_G0023646) #16	Dlx2 (MGP_CAROLIEiJ_G0023647) #18	Itga6 (MGP_CAROLIEiJ_G0023648) #19	Pdk1 (MGP_CAROLIEiJ_G0023649) #20	Rapgef4 (MGP_CAROLIEiJ_G0023650) #21	Map3k20 (MGP_CAROLIEiJ_G0023651) #22	Cdca7 (MGP_CAROLIEiJ_G0023652) #23	Sp3 (MGP_CAROLIEiJ_G0023653) #24	MGP_CAROLIEiJ_G0023654	Ola1 (MGP_CAROLIEiJ_G0023655) #25	Sp9 (MGP_CAROLIEiJ_G0023656) #26	Cir1 (MGP_CAROLIEiJ_G0023657) #27	Scrn3 (MGP_CAROLIEiJ_G0023658) #28	Gpr155 (MGP_CAROLIEiJ_G0023659) #29	Wipf1 (MGP_CAROLIEiJ_G0023660)	Chrna1 (MGP_CAROLIEiJ_G0023661) #32	Chn1 (MGP_CAROLIEiJ_G0023662) #33	Atf2 (MGP_CAROLIEiJ_G0023663) #34	Atp5g3 (MGP_CAROLIEiJ_G0023664) #35	Lnpk (MGP_CAROLIEiJ_G0023665)	Evx2 (MGP_CAROLIEiJ_G0023666)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025088	Gorasp2 (MGP_PahariEiJ_G0025089)	Tlk1 (MGP_PahariEiJ_G0025090)	Mettl8 (MGP_PahariEiJ_G0025091)	Dcaf17 (MGP_PahariEiJ_G0025092) #7	Cybrd1 (MGP_PahariEiJ_G0025093) #8	Dync1i2 (MGP_PahariEiJ_G0025094) #10	Slc25a12 (MGP_PahariEiJ_G0025095) #11	Hat1 (MGP_PahariEiJ_G0025096) #14	Metap1d (MGP_PahariEiJ_G0025097) #15	Dlx1 (MGP_PahariEiJ_G0025098) #16	Dlx2 (MGP_PahariEiJ_G0025099) #18	Itga6 (MGP_PahariEiJ_G0025100) #19	Pdk1 (MGP_PahariEiJ_G0025101) #20	Rapgef4 (MGP_PahariEiJ_G0025102) #21	Map3k20 (MGP_PahariEiJ_G0025103) #22	Cdca7 (MGP_PahariEiJ_G0025104) #23	Sp3 (MGP_PahariEiJ_G0025105) #24	MGP_PahariEiJ_G0025106	Ola1 (MGP_PahariEiJ_G0025107) #25	Sp9 (MGP_PahariEiJ_G0025108) #26	MGP_PahariEiJ_G0025109 #27	Scrn3 (MGP_PahariEiJ_G0025110) #28	Gpr155 (MGP_PahariEiJ_G0025111) #29	Wipf1 (MGP_PahariEiJ_G0025112)	Chrna1 (MGP_PahariEiJ_G0025113) #32	MGP_PahariEiJ_G0025114 #33	Atf2 (MGP_PahariEiJ_G0025115) #34	Atp5g3 (MGP_PahariEiJ_G0025116) #35	Lnpk (MGP_PahariEiJ_G0025117)	Evx2 (MGP_PahariEiJ_G0025118)
Rat	MODERN SPECIES	13	RGD1565767 (ENSRNOG00000023181)	Mettl8 (ENSRNOG00000009382)	Dcaf17 (ENSRNOG00000009403) #7	Cybrd1 (ENSRNOG00000009620) #8	AC107446.1 (ENSRNOG00000023090)	Dync1i2 (ENSRNOG00000009781) #10	Slc25a12 (ENSRNOG00000022922) #11	ENSRNOG00000065953	Hat1 (ENSRNOG00000001524) #14	Metap1d (ENSRNOG00000061587) #15	Dlx1 (ENSRNOG00000001520) #16	Dlx2 (ENSRNOG00000001519) #18	Itga6 (ENSRNOG00000001518) #19	Pdk1 (ENSRNOG00000001517) #20	Rapgef4 (ENSRNOG00000001516) #21	Map3k20 (ENSRNOG00000001515) #22	Cdca7 (ENSRNOG00000001514) #23	AABR07052519.1 (ENSRNOG00000029423)	Eno1-ps1 (ENSRNOG00000028543)	LOC120101567 (ENSRNOG00000028492)	AC120066.1 (ENSRNOG00000001510)	Sp3 (ENSRNOG00000060479) #24	Ola1 (ENSRNOG00000019047) #25	ENSRNOG00000032195	Sp9 (ENSRNOG00000028187) #26	Cir1 (ENSRNOG00000018719) #27	Scrn3 (ENSRNOG00000018657) #28	Gpr155 (ENSRNOG00000018485) #29	Wipf1 (ENSRNOG00000018406)	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #32
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Northern American deer mouse	MODERN SPECIES	17	Gorasp2 (ENSPEMG00000024238)	Tlk1 (ENSPEMG00000021230)	Mettl8 (ENSPEMG00000021290)	Dcaf17 (ENSPEMG00000021352) #7	Cybrd1 (ENSPEMG00000029037) #8	ENSPEMG00000029849	Dync1i2 (ENSPEMG00000023906) #10	Slc25a12 (ENSPEMG00000006815) #11	Hat1 (ENSPEMG00000023933) #14	Metap1d (ENSPEMG00000021372) #15	Dlx1 (ENSPEMG00000026584) #16	Dlx2 (ENSPEMG00000028459) #18	Itga6 (ENSPEMG00000021809) #19	Pdk1 (ENSPEMG00000002841) #20	Rapgef4 (ENSPEMG00000009780) #21	Map3k20 (ENSPEMG00000000421) #22	Cdca7 (ENSPEMG00000022184) #23	Sp3 (ENSPEMG00000022766) #24	Ola1 (ENSPEMG00000021970) #25	Sp9 (ENSPEMG00000029035) #26	Cir1 (ENSPEMG00000022223) #27	Scrn3 (ENSPEMG00000022424) #28	Gpr155 (ENSPEMG00000022602) #29	Wipf1 (ENSPEMG00000013848)	Chrna1 (ENSPEMG00000012571) #32	Chn1 (ENSPEMG00000022535) #33	Atf2 (ENSPEMG00000021625) #34	Atp5g3 (ENSPEMG00000023766) #35	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827)	Evx2 (ENSPEMG00000022145)
Prairie vole	MODERN SPECIES	12	ENSMOCG00000021730	Gorasp2 (ENSMOCG00000019028)	Tlk1 (ENSMOCG00000017848)	Mettl8 (ENSMOCG00000021718)	Dcaf17 (ENSMOCG00000008437) #7	Cybrd1 (ENSMOCG00000011583) #8	Dync1i2 (ENSMOCG00000017469) #10	Slc25a12 (ENSMOCG00000018148) #11	Hat1 (ENSMOCG00000019675) #14	ENSMOCG00000022319 #15	Dlx1 (ENSMOCG00000022946) #16	Dlx2 (ENSMOCG00000011375) #18	Itga6 (ENSMOCG00000013969) #19	Pdk1 (ENSMOCG00000020171) #20	Rapgef4 (ENSMOCG00000020670) #21	Map3k20 (ENSMOCG00000001753) #22	Cdca7 (ENSMOCG00000015927) #23	Sp3 (ENSMOCG00000022929) #24	ENSMOCG00000003269	ENSMOCG00000003125 #25	Sp9 (ENSMOCG00000019136) #26	Cir1 (ENSMOCG00000017545) #27	Scrn3 (ENSMOCG00000018966) #28	Gpr155 (ENSMOCG00000003950) #29	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #32	Chn1 (ENSMOCG00000005574) #33	Atf2 (ENSMOCG00000015301) #34	ENSMOCG00000012786 #35	Lnpk (ENSMOCG00000022345)	Evx2 (ENSMOCG00000010466)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00860000136136	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000171387	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001018961	Gorasp2 (ENSCGRG00001014284)	Tlk1 (ENSCGRG00001022409)	Mettl8 (ENSCGRG00001016757)	Dcaf17 (ENSCGRG00001011719) #7	Cybrd1 (ENSCGRG00001004905) #8	Dync1i2 (ENSCGRG00001000739) #10	Slc25a12 (ENSCGRG00001008427) #11	Hat1 (ENSCGRG00001005351) #14	Metap1d (ENSCGRG00001002792) #15	Dlx1 (ENSCGRG00001001323) #16	Dlx2 (ENSCGRG00001000503) #18	Itga6 (ENSCGRG00001017916) #19	ENSCGRG00001016131 #20	Rapgef4 (ENSCGRG00001015061) #21	Map3k20 (ENSCGRG00001013908) #22	Cdca7 (ENSCGRG00001013059) #23	ENSCGRG00001009149	ENSCGRG00001005867 #24	ENSCGRG00001003688	Ola1 (ENSCGRG00001001469) #25	Sp9 (ENSCGRG00001024896) #26	Cir1 (ENSCGRG00001015518) #27	Scrn3 (ENSCGRG00001014709) #28	Gpr155 (ENSCGRG00001014219) #29	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #32	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #33	Atf2 (ENSCGRG00001015584) #34	Atp5g3 (ENSCGRG00001012041) #35
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	721															ENSMAUG00000001414	ENSMAUG00000016868 #22	Bach2 (ENSMAUG00000016851)	Gja10 (ENSMAUG00000020453)	Casp8ap2 (ENSMAUG00000018512)	ENSMAUG00000014080	Ankrd6 (ENSMAUG00000011054)	Rragd (ENSMAUG00000021734)	Gabrr1 (ENSMAUG00000019124)	ENSMAUG00000017845	Pnrc1 (ENSMAUG00000012518)	Rngtt (ENSMAUG00000021153)	Cnr1 (ENSMAUG00000014040)	Spaca1 (ENSMAUG00000010690)	Akirin2 (ENSMAUG00000013076)	Rars2 (ENSMAUG00000008929)	Slc35a1 (ENSMAUG00000012111)
Golden Hamster	MODERN SPECIES	618	Erich2 (ENSMAUG00000020429)	Gad1 (ENSMAUG00000021628)	ENSMAUG00000021000	Gorasp2 (ENSMAUG00000020411)	Tlk1 (ENSMAUG00000020231)	ENSMAUG00000020824	Dcaf17 (ENSMAUG00000020289) #7	ENSMAUG00000019034	Hat1 (ENSMAUG00000019568) #14	Metap1d (ENSMAUG00000019354) #15	Dlx1 (ENSMAUG00000021735) #16	Dlx2 (ENSMAUG00000021831) #18	Itga6 (ENSMAUG00000020187) #19	Pdk1 (ENSMAUG00000019499) #20	Rapgef4 (ENSMAUG00000021185) #21	Map3k20 (ENSMAUG00000021309) #22	Cdca7 (ENSMAUG00000020932) #23	ENSMAUG00000020351	ENSMAUG00000001485	Ola1 (ENSMAUG00000019168) #25	Sp9 (ENSMAUG00000020520) #26	ENSMAUG00000019383 #27	Scrn3 (ENSMAUG00000020703) #28	Gpr155 (ENSMAUG00000019481) #29	ENSMAUG00000019796 #30	Chrna1 (ENSMAUG00000017924) #32	Chn1 (ENSMAUG00000018455) #33	Atf2 (ENSMAUG00000018366) #34	Atp5g3 (ENSMAUG00000017685) #35	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.xb #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Marmotini	ANCESTRAL SPECIES	2	ENSGT00950000182984.b.a.b	ENSGT00940000158041.f	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.xb.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00950000182984.b.a.b	ENSGT00940000158041.f	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01050000245777	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.xb.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Squirrel	MODERN SPECIES	109	TLK1 (ENSSTOG00000015694)	ENSSTOG00000026404	ENSSTOG00000022641	METTL8 (ENSSTOG00000008451)	DCAF17 (ENSSTOG00000008475) #7	CYBRD1 (ENSSTOG00000023035) #8	DYNC1I2 (ENSSTOG00000009040) #10	SLC25A12 (ENSSTOG00000007698) #11	HAT1 (ENSSTOG00000012940) #14	METAP1D (ENSSTOG00000012954) #15	DLX1 (ENSSTOG00000012969) #16	DLX2 (ENSSTOG00000019803) #18	ITGA6 (ENSSTOG00000006442) #19	PDK1 (ENSSTOG00000006473) #20	RAPGEF4 (ENSSTOG00000001706) #21	MAP3K20 (ENSSTOG00000022529) #22	ENSSTOG00000009026 #23	SP3 (ENSSTOG00000023955) #24	OLA1 (ENSSTOG00000015547) #25	CIR1 (ENSSTOG00000001233) #27	SCRN3 (ENSSTOG00000001236) #28	GPR155 (ENSSTOG00000001239) #29	ENSSTOG00000004271	CHRNA1 (ENSSTOG00000004281) #32	CHN1 (ENSSTOG00000004301) #33	ATF2 (ENSSTOG00000014079) #34	ENSSTOG00000013572 #35	LNPK (ENSSTOG00000014498)	EVX2 (ENSSTOG00000014512)	HOXD13 (ENSSTOG00000004117)	HOXD12 (ENSSTOG00000004918)
Arctic ground squirrel	MODERN SPECIES	69	TLK1 (ENSUPAG00010010088)	ENSUPAG00010010158	METTL8 (ENSUPAG00010010169)	DCAF17 (ENSUPAG00010010203) #7	CYBRD1 (ENSUPAG00010010276) #8	ENSUPAG00010010279	DYNC1I2 (ENSUPAG00010010286) #10	SLC25A12 (ENSUPAG00010010683) #11	HAT1 (ENSUPAG00010010712) #14	METAP1D (ENSUPAG00010010729) #15	DLX1 (ENSUPAG00010010747) #16	DLX2 (ENSUPAG00010010756) #18	ITGA6 (ENSUPAG00010010765) #19	PDK1 (ENSUPAG00010010801) #20	RAPGEF4 (ENSUPAG00010010823) #21	MAP3K20 (ENSUPAG00010010879) #22	CDCA7 (ENSUPAG00010010913) #23	ENSUPAG00010010922	SP3 (ENSUPAG00010010925) #24	OLA1 (ENSUPAG00010011018) #25	SP9 (ENSUPAG00010011063) #26
Alpin marmot	MODERN SPECIES	5	TLK1 (ENSMMMG00000023591)	ENSMMMG00000023593	METTL8 (ENSMMMG00000023595)	DCAF17 (ENSMMMG00000023604) #7	ENSMMMG00000023622 #8	ENSMMMG00000023623	DYNC1I2 (ENSMMMG00000023624) #10	ENSMMMG00000023651	HAT1 (ENSMMMG00000023652) #14	METAP1D (ENSMMMG00000023656) #15	DLX1 (ENSMMMG00000023657) #16	DLX2 (ENSMMMG00000023658) #18	ITGA6 (ENSMMMG00000023663) #19	PDK1 (ENSMMMG00000023665) #20	RAPGEF4 (ENSMMMG00000023674) #21	MAP3K20 (ENSMMMG00000023687) #22	CDCA7 (ENSMMMG00000023690) #23	SP3 (ENSMMMG00000023692) #24	OLA1 (ENSMMMG00000023695) #25	CIR1 (ENSMMMG00000023697) #27	ENSMMMG00000023700 #28	ENSMMMG00000023702 #28	GPR155 (ENSMMMG00000023705) #29	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716)	CHRNA1 (ENSMMMG00000023717) #32	CHN1 (ENSMMMG00000023718) #33	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #34	ENSMMMG00000023748 #35	LNPK (ENSMMMG00000023755)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296.t	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000046310	DCAF17 (ENSHGLG00000011952) #7	CYBRD1 (ENSHGLG00000034556) #8	DYNC1I2 (ENSHGLG00000018773) #10	SLC25A12 (ENSHGLG00000016014) #11	HAT1 (ENSHGLG00000006082) #14	DLX1 (ENSHGLG00000008870) #16	DLX2 (ENSHGLG00000043242) #18	ENSHGLG00000033603	ITGA6 (ENSHGLG00000010983) #19	ENSHGLG00000038370	PDK1 (ENSHGLG00000044084) #20	ENSHGLG00000034511	RAPGEF4 (ENSHGLG00000004731) #21	ENSHGLG00000007599	MAP3K20 (ENSHGLG00000003563) #22	CDCA7 (ENSHGLG00000004119) #23	ENSHGLG00000033114	ENSHGLG00000033105	ENSHGLG00000001810	SP3 (ENSHGLG00000007831) #24	ENSHGLG00000006618 #25	ENSHGLG00000046967	ENSHGLG00000040018	SP9 (ENSHGLG00000007443) #26	CIR1 (ENSHGLG00000008097) #27	SCRN3 (ENSHGLG00000010172) #28	GPR155 (ENSHGLG00000012529) #29	ENSHGLG00000036822	ENSHGLG00000039411	CHRNA1 (ENSHGLG00000015432) #32
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296.t	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Guinea pig	MODERN SPECIES	3	GAD1 (ENSCPOG00000004156)	GORASP2 (ENSCPOG00000030781)	TLK1 (ENSCPOG00000004161)	METTL8 (ENSCPOG00000037529)	DCAF17 (ENSCPOG00000013459) #7	CYBRD1 (ENSCPOG00000020281) #8	DYNC1I2 (ENSCPOG00000014814) #10	SLC25A12 (ENSCPOG00000014818) #11	HAT1 (ENSCPOG00000001837) #14	METAP1D (ENSCPOG00000004553) #15	DLX1 (ENSCPOG00000040135) #16	DLX2 (ENSCPOG00000040000) #18	ITGA6 (ENSCPOG00000008418) #19	PDK1 (ENSCPOG00000008434) #20	RAPGEF4 (ENSCPOG00000010605) #21	MAP3K20 (ENSCPOG00000040705) #22	CDCA7 (ENSCPOG00000011784) #23	SP3 (ENSCPOG00000002942) #24	OLA1 (ENSCPOG00000031110) #25	SP9 (ENSCPOG00000032651) #26	CIR1 (ENSCPOG00000010275) #27	SCRN3 (ENSCPOG00000010281) #28	GPR155 (ENSCPOG00000010286) #29	ENSCPOG00000034131	CHRNA1 (ENSCPOG00000000036) #32	ENSCPOG00000002789 #33	ATF2 (ENSCPOG00000004637) #34	ATP5MC3 (ENSCPOG00000040161) #35	LNPK (ENSCPOG00000010971)	EVX2 (ENSCPOG00000006711)	HOXD13 (ENSCPOG00000006722)
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296.t	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Degu	MODERN SPECIES	106	ENSODEG00000019828	METTL8 (ENSODEG00000010652)	DCAF17 (ENSODEG00000010610) #7	CYBRD1 (ENSODEG00000010375) #8	DYNC1I2 (ENSODEG00000010272) #10	ENSODEG00000009716 #11	ENSODEG00000010259 #14	METAP1D (ENSODEG00000013584) #15	DLX1 (ENSODEG00000009183) #16	DLX2 (ENSODEG00000009317) #18	ENSODEG00000010482	ENSODEG00000009781	ITGA6 (ENSODEG00000010571) #19	PDK1 (ENSODEG00000010359) #20	RAPGEF4 (ENSODEG00000010386) #21	ENSODEG00000009783 #22	CDCA7 (ENSODEG00000009927) #23	SP3 (ENSODEG00000008679) #24	ENSODEG00000019637	ENSODEG00000010224	OLA1 (ENSODEG00000009011) #25	SP9 (ENSODEG00000009569) #26	CIR1 (ENSODEG00000009325) #27	ENSODEG00000009961 #28	GPR155 (ENSODEG00000009263) #29	ENSODEG00000008878	ENSODEG00000008975	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #32	CHN1 (ENSODEG00000008560) #33	ATF2 (ENSODEG00000010947) #34
Primates	ANCESTRAL SPECIES	13	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.k.a #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b.v.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Mouse lemur	MODERN SPECIES	30	GORASP2 (ENSMICG00000015034)	TLK1 (ENSMICG00000033836)	METTL8 (ENSMICG00000015106)	DCAF17 (ENSMICG00000036200) #7	CYBRD1 (ENSMICG00000043186) #8	DYNC1I2 (ENSMICG00000006950) #10	HAT1 (ENSMICG00000006967) #14	SLC25A12 (ENSMICG00000006956) #11	METAP1D (ENSMICG00000035249) #15	DLX1 (ENSMICG00000031703) #16	DLX2 (ENSMICG00000006986) #18	ENSMICG00000013815	ITGA6 (ENSMICG00000006990) #19	PDK1 (ENSMICG00000007005) #20	RAPGEF4 (ENSMICG00000011026) #21	MAP3K20 (ENSMICG00000011055) #22	CDCA7 (ENSMICG00000016991) #23	SP3 (ENSMICG00000014796) #24	ENSMICG00000000354 #25	ENSMICG00000007356	SP9 (ENSMICG00000031506) #26	CIR1 (ENSMICG00000026886) #27	SCRN3 (ENSMICG00000000366) #28	GPR155 (ENSMICG00000000369) #29	ENSMICG00000031974 #30	CHRNA1 (ENSMICG00000014284) #32	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #33	ATF2 (ENSMICG00000006417) #34	ATP5MC3 (ENSMICG00000006421) #35	LNPK (ENSMICG00000027707)
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.k.a #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b.v.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Greater bamboo lemur	MODERN SPECIES	243	GORASP2 (ENSPSMG00000023197)	TLK1 (ENSPSMG00000023224)	METTL8 (ENSPSMG00000023246)	DCAF17 (ENSPSMG00000023263) #7	CYBRD1 (ENSPSMG00000023276) #8	DYNC1I2 (ENSPSMG00000023405) #10	SLC25A12 (ENSPSMG00000023545) #11	HAT1 (ENSPSMG00000023577) #14	METAP1D (ENSPSMG00000023580) #15	DLX1 (ENSPSMG00000023590) #16	ENSPSMG00000023593	DLX2 (ENSPSMG00000023598) #18	ITGA6 (ENSPSMG00000023755) #19	PDK1 (ENSPSMG00000023879) #20	RAPGEF4 (ENSPSMG00000023978) #21	MAP3K20 (ENSPSMG00000024048) #22	ENSPSMG00000024060	CDCA7 (ENSPSMG00000024083) #23	SP3 (ENSPSMG00000024117) #24	OLA1 (ENSPSMG00000024129) #25	SP9 (ENSPSMG00000024136) #26	CIR1 (ENSPSMG00000024153) #27	SCRN3 (ENSPSMG00000024170) #28	GPR155 (ENSPSMG00000024199) #29	WIPF1 (ENSPSMG00000024219)	CHRNA1 (ENSPSMG00000024264) #32	CHN1 (ENSPSMG00000024301) #33	ATF2 (ENSPSMG00000024416) #34	ATP5MC3 (ENSPSMG00000024446) #35	LNPK (ENSPSMG00000024460)	ENSPSMG00000024465
Coquerels sifaka	MODERN SPECIES	478	TLK1 (ENSPCOG00000024648)	METTL8 (ENSPCOG00000028842)	DCAF17 (ENSPCOG00000017687) #7	ENSPCOG00000018843	ENSPCOG00000015109	CYBRD1 (ENSPCOG00000020446) #8	ENSPCOG00000015276 #10	SLC25A12 (ENSPCOG00000020183) #11	HAT1 (ENSPCOG00000020715) #14	METAP1D (ENSPCOG00000007127) #15	DLX1 (ENSPCOG00000001925) #16	DLX2 (ENSPCOG00000010310) #18	ITGA6 (ENSPCOG00000020776) #19	PDK1 (ENSPCOG00000009920) #20	RAPGEF4 (ENSPCOG00000022261) #21	MAP3K20 (ENSPCOG00000027012) #22	CDCA7 (ENSPCOG00000001432) #23	SP3 (ENSPCOG00000017224) #24	ENSPCOG00000017353 #25	SP9 (ENSPCOG00000018883) #26	CIR1 (ENSPCOG00000014298) #27	SCRN3 (ENSPCOG00000015456) #28	GPR155 (ENSPCOG00000014376) #29	ENSPCOG00000018466	ENSPCOG00000015733 #30	CHRNA1 (ENSPCOG00000020642) #32	CHN1 (ENSPCOG00000018830) #33	ATF2 (ENSPCOG00000025416) #34	ATP5MC3 (ENSPCOG00000016374) #35	LNPK (ENSPCOG00000026983)	EVX2 (ENSPCOG00000022416)
Bushbaby	MODERN SPECIES	163														RAPGEF4 (ENSOGAG00000014048) #21	ENSOGAG00000033209	ENSOGAG00000014054 #22	CDCA7 (ENSOGAG00000000508) #23	SP3 (ENSOGAG00000026846) #24	OLA1 (ENSOGAG00000016557) #25	SP9 (ENSOGAG00000034062) #26	CIR1 (ENSOGAG00000016564) #27	SCRN3 (ENSOGAG00000016569) #28	GPR155 (ENSOGAG00000016571) #29	WIPF1 (ENSOGAG00000016579)	CHRNA1 (ENSOGAG00000000890) #32	CHN1 (ENSOGAG00000000894) #33	ATF2 (ENSOGAG00000011373) #34	ATP5MC3 (ENSOGAG00000027578) #35	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372)
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00390000008686.d	ENSGT00910000147411	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Tarsier	MODERN SPECIES	5610															RAPGEF4 (ENSTSYG00000013161) #21	MAP3K20 (ENSTSYG00000013173) #22
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00910000147411.b	ENSGT00950000182984.b.a.b	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00910000147411.b	ENSGT00950000182984.b.a.b	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.o.a.b #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.o.a.a #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436.o.a.b #23	ENSGT00940000155099.a #24	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938
Capuchin	MODERN SPECIES	110	ENSCCAG00000033852	ENSCCAG00000031201	METTL8 (ENSCCAG00000030997)	ENSCCAG00000035639	DCAF17 (ENSCCAG00000025483) #7	CYBRD1 (ENSCCAG00000036782) #8	DYNC1I2 (ENSCCAG00000032503) #10	SLC25A12 (ENSCCAG00000029194) #11	HAT1 (ENSCCAG00000006420) #14	METAP1D (ENSCCAG00000030496) #15	DLX1 (ENSCCAG00000027463) #16	DLX2 (ENSCCAG00000023784) #18	ITGA6 (ENSCCAG00000022463) #19	PDK1 (ENSCCAG00000023566) #20	RAPGEF4 (ENSCCAG00000034923) #21	MAP3K20 (ENSCCAG00000029605) #22	ENSCCAG00000033554 #23	SP3 (ENSCCAG00000024347) #24	OLA1 (ENSCCAG00000017844) #25	ENSCCAG00000028608	ENSCCAG00000035969	SP9 (ENSCCAG00000031565) #26	CIR1 (ENSCCAG00000030492) #27	SCRN3 (ENSCCAG00000022566) #28	GPR155 (ENSCCAG00000032455) #29	WIPF1 (ENSCCAG00000012994)	CHRNA1 (ENSCCAG00000032209) #32	CHN1 (ENSCCAG00000027038) #33	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #34	ENSCCAG00000020514 #35
Bolivian squirrel monkey	MODERN SPECIES	46	ENSSBOG00000027578	METTL8 (ENSSBOG00000029503)	DCAF17 (ENSSBOG00000029035) #7	CYBRD1 (ENSSBOG00000030691) #8	DYNC1I2 (ENSSBOG00000028159) #10	SLC25A12 (ENSSBOG00000021566) #11	ENSSBOG00000035650	HAT1 (ENSSBOG00000027379) #14	METAP1D (ENSSBOG00000030256) #15	DLX1 (ENSSBOG00000018939) #16	DLX2 (ENSSBOG00000028830) #18	ENSSBOG00000035010	ITGA6 (ENSSBOG00000032166) #19	PDK1 (ENSSBOG00000019615) #20	RAPGEF4 (ENSSBOG00000031049) #21	MAP3K20 (ENSSBOG00000023872) #22	ENSSBOG00000029333 #23	SP3 (ENSSBOG00000035329) #24	ENSSBOG00000002999 #25	ENSSBOG00000020259	CIR1 (ENSSBOG00000028527) #27	SCRN3 (ENSSBOG00000033089) #28	GPR155 (ENSSBOG00000034957) #29	WIPF1 (ENSSBOG00000032169)	CHRNA1 (ENSSBOG00000035763) #32	CHN1 (ENSSBOG00000016307) #33	ATF2 (ENSSBOG00000025461) #34	ATP5MC3 (ENSSBOG00000022688) #35	LNPK (ENSSBOG00000023054)	EVX2 (ENSSBOG00000034364)	HOXD13 (ENSSBOG00000032579)
Marmoset	MODERN SPECIES	18	ENSCJAG00000076253	METTL8 (ENSCJAG00000007144)	DCAF17 (ENSCJAG00000007161) #7	ENSCJAG00000073146	CYBRD1 (ENSCJAG00000007191) #8	DYNC1I2 (ENSCJAG00000007196) #10	HAT1 (ENSCJAG00000007340) #14	SLC25A12 (ENSCJAG00000007305) #11	METAP1D (ENSCJAG00000007373) #15	DLX1 (ENSCJAG00000007381) #16	DLX2 (ENSCJAG00000007389) #18	ENSCJAG00000012387	ITGA6 (ENSCJAG00000007399) #19	PDK1 (ENSCJAG00000007507) #20	RAPGEF4 (ENSCJAG00000007525) #21	MAP3K20 (ENSCJAG00000007736) #22	CDCA7 (ENSCJAG00000007809) #23	SP3 (ENSCJAG00000007851) #24	OLA1 (ENSCJAG00000007877) #25	SP9 (ENSCJAG00000061755) #26	ENSCJAG00000081398	CIR1 (ENSCJAG00000007884) #27	SCRN3 (ENSCJAG00000007909) #28	GPR155 (ENSCJAG00000007947) #29	WIPF1 (ENSCJAG00000048519)	CHRNA1 (ENSCJAG00000008007) #32	CHN1 (ENSCJAG00000008041) #33	ATF2 (ENSCJAG00000008085) #34	ATP5MC3 (ENSCJAG00000008207) #35	ENSCJAG00000080703	ENSCJAG00000084464
Mas night monkey	MODERN SPECIES	1334						DYNC1I2 (ENSANAG00000034069) #10	HAT1 (ENSANAG00000023096) #14	SLC25A12 (ENSANAG00000022020) #11	METAP1D (ENSANAG00000031660) #15	DLX1 (ENSANAG00000023801) #16	DLX2 (ENSANAG00000015837) #18	ITGA6 (ENSANAG00000020937) #19	PDK1 (ENSANAG00000001115) #20	ENSANAG00000019688	RAPGEF4 (ENSANAG00000037251) #21	ENSANAG00000021507 #22	ENSANAG00000028410 #23	SP3 (ENSANAG00000034901) #24	ENSANAG00000031095	OLA1 (ENSANAG00000029072) #25	SP9 (ENSANAG00000022517) #26	CIR1 (ENSANAG00000020255) #27	SCRN3 (ENSANAG00000030334) #28	GPR155 (ENSANAG00000024897) #29	WIPF1 (ENSANAG00000024291)
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b.a.a #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Hominidae	ANCESTRAL SPECIES	17	ENSGT00910000147874	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b.a.a #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000159683	ENSGT00390000002517.a.b.b.d	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b.a.a #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Gorilla	MODERN SPECIES	15	TLK1 (ENSGGOG00000013405)	METTL8 (ENSGGOG00000043216)	ENSGGOG00000038425	DCAF17 (ENSGGOG00000025563) #7	CYBRD1 (ENSGGOG00000000705) #8	DYNC1I2 (ENSGGOG00000002696) #10	SLC25A12 (ENSGGOG00000008939) #11	HAT1 (ENSGGOG00000009353) #14	METAP1D (ENSGGOG00000003691) #15	DLX1 (ENSGGOG00000003698) #16	DLX2 (ENSGGOG00000005300) #18	ITGA6 (ENSGGOG00000007814) #19	PDK1 (ENSGGOG00000040981) #20	RAPGEF4 (ENSGGOG00000009121) #21	ENSGGOG00000038487	MAP3K20 (ENSGGOG00000005714) #22	CDCA7 (ENSGGOG00000024973) #23	ENSGGOG00000042056	ENSGGOG00000041018	ENSGGOG00000041228	SP3 (ENSGGOG00000011699) #24	OLA1 (ENSGGOG00000022215) #25	SP9 (ENSGGOG00000007345) #26	SCRN3 (ENSGGOG00000034896) #28	GPR155 (ENSGGOG00000004876) #29	ENSGGOG00000005480	WIPF1 (ENSGGOG00000016773)	CHRNA1 (ENSGGOG00000008036) #32	CHN1 (ENSGGOG00000002177) #33	ATF2 (ENSGGOG00000027461) #34	ATP5MC3 (ENSGGOG00000036796) #35
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00940000159683	ENSGT00390000002517.a.b.b.d	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b.a.a #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Pan	ANCESTRAL SPECIES	12	ENSGT00940000159683	ENSGT00390000002517.a.b.b.d	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422	ENSGT00940000153137.a.a.h	ENSGT00950000183087.B	ENSGT00940000155099.a #24	ENSGT00390000000673.b.a.a #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33
Bonobo	MODERN SPECIES	15	METTL8 (ENSPPAG00000029583)	ENSPPAG00000033725	DCAF17 (ENSPPAG00000040993) #7	CYBRD1 (ENSPPAG00000002105) #8	DYNC1I2 (ENSPPAG00000028769) #10	SLC25A12 (ENSPPAG00000023767) #11	HAT1 (ENSPPAG00000043422) #14	METAP1D (ENSPPAG00000036552) #15	DLX1 (ENSPPAG00000031895) #16	DLX2 (ENSPPAG00000039596) #18	ITGA6 (ENSPPAG00000027108) #19	ENSPPAG00000019223	PDK1 (ENSPPAG00000042696) #20	ENSPPAG00000041264	RAPGEF4 (ENSPPAG00000037991) #21	MAP3K20 (ENSPPAG00000000371) #22	CDCA7 (ENSPPAG00000040919) #23	ENSPPAG00000027126	ENSPPAG00000037850	SP3 (ENSPPAG00000028328) #24	OLA1 (ENSPPAG00000035004) #25	CIR1 (ENSPPAG00000041485) #27	SCRN3 (ENSPPAG00000032328) #28	GPR155 (ENSPPAG00000032733) #29	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968)	CHRNA1 (ENSPPAG00000024985) #32	ENSPPAG00000023882 #33	ATF2 (ENSPPAG00000027656) #34	ATP5MC3 (ENSPPAG00000036512) #35	LNPK (ENSPPAG00000030440)
Chimpanzee	MODERN SPECIES	15	METTL8 (ENSPTRG00000012630)	ENSPTRG00000047763	DCAF17 (ENSPTRG00000012632) #7	CYBRD1 (ENSPTRG00000012634) #8	DYNC1I2 (ENSPTRG00000023476) #10	SLC25A12 (ENSPTRG00000012636) #11	HAT1 (ENSPTRG00000012637) #14	METAP1D (ENSPTRG00000012638) #15	DLX1 (ENSPTRG00000012639) #16	DLX2 (ENSPTRG00000012640) #18	ITGA6 (ENSPTRG00000012641) #19	ENSPTRG00000048488	PDK1 (ENSPTRG00000012642) #20	RAPGEF4 (ENSPTRG00000012643) #21	ENSPTRG00000052310	MAP3K20 (ENSPTRG00000012644) #22	CDCA7 (ENSPTRG00000012645) #23	ENSPTRG00000052501	ENSPTRG00000051676	ENSPTRG00000044219	SP3 (ENSPTRG00000012647) #24	OLA1 (ENSPTRG00000012650) #25	SP9 (ENSPTRG00000045805) #26	CIR1 (ENSPTRG00000012652) #27	SCRN3 (ENSPTRG00000012653) #28	GPR155 (ENSPTRG00000012655) #29	WIPF1 (ENSPTRG00000012656)	CHRNA1 (ENSPTRG00000012658) #32	CHN1 (ENSPTRG00000012659) #33	ATF2 (ENSPTRG00000012660) #34	ATP5MC3 (ENSPTRG00000047314) #35
Human	MODERN SPECIES	11	GAD1 (ENSG00000128683)	GORASP2 (ENSG00000115806)	TLK1 (ENSG00000198586)	METTL8 (ENSG00000123600)	DCAF17 (ENSG00000115827) #7	CYBRD1 (ENSG00000071967) #8	DYNC1I2 (ENSG00000077380) #10	SLC25A12 (ENSG00000115840) #11	HAT1 (ENSG00000128708) #14	METAP1D (ENSG00000172878) #15	DLX1 (ENSG00000144355) #16	DLX2 (ENSG00000115844) #18	ITGA6 (ENSG00000091409) #19	PDK1 (ENSG00000152256) #20	RAPGEF4 (ENSG00000091428) #21	MAP3K20 (ENSG00000091436) #22	CDCA7 (ENSG00000144354) #23	SP3 (ENSG00000172845) #24	OLA1 (ENSG00000138430) #25	SP9 (ENSG00000217236) #26	CIR1 (ENSG00000138433) #27	SCRN3 (ENSG00000144306) #28	GPR155 (ENSG00000163328) #29	WIPF1 (ENSG00000115935)	CHRNA1 (ENSG00000138435) #32	CHN1 (ENSG00000128656) #33	ATF2 (ENSG00000115966) #34	ATP5MC3 (ENSG00000154518) #35	LNPK (ENSG00000144320)	EVX2 (ENSG00000174279)	HOXD13 (ENSG00000128714)
Orangutan	MODERN SPECIES	15	GORASP2 (ENSPPYG00000012925)	TLK1 (ENSPPYG00000012926)	METTL8 (ENSPPYG00000012927)	DCAF17 (ENSPPYG00000033317) #7	CYBRD1 (ENSPPYG00000012929) #8	DYNC1I2 (ENSPPYG00000012930) #10	SLC25A12 (ENSPPYG00000012931) #11	ENSPPYG00000034814	HAT1 (ENSPPYG00000012932) #14	METAP1D (ENSPPYG00000012933) #15	DLX1 (ENSPPYG00000035109) #16	DLX2 (ENSPPYG00000012935) #18	ITGA6 (ENSPPYG00000012936) #19	PDK1 (ENSPPYG00000012937) #20	RAPGEF4 (ENSPPYG00000012938) #21	MAP3K20 (ENSPPYG00000012939) #22	CDCA7 (ENSPPYG00000012940) #23	SP3 (ENSPPYG00000012941) #24	OLA1 (ENSPPYG00000012943) #25	SP9 (ENSPPYG00000033437) #26	ENSPPYG00000012945 #27	ENSPPYG00000012946 #28	GPR155 (ENSPPYG00000012947) #29	WIPF1 (ENSPPYG00000012948)	CHRNA1 (ENSPPYG00000012949) #32	CHN1 (ENSPPYG00000012950) #33	ATF2 (ENSPPYG00000012951) #34	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033) #35	LNPK (ENSPPYG00000032630)	EVX2 (ENSPPYG00000012955)
Gibbon	MODERN SPECIES	14	TLK1 (ENSNLEG00000005305)	METTL8 (ENSNLEG00000005370)	DCAF17 (ENSNLEG00000005384) #7	CYBRD1 (ENSNLEG00000005410) #8	DYNC1I2 (ENSNLEG00000005419) #10	SLC25A12 (ENSNLEG00000005482) #11	HAT1 (ENSNLEG00000031960) #14	METAP1D (ENSNLEG00000005539) #15	DLX1 (ENSNLEG00000034694) #16	DLX2 (ENSNLEG00000028520) #18	ITGA6 (ENSNLEG00000005561) #19	PDK1 (ENSNLEG00000005639) #20	ENSNLEG00000030229	RAPGEF4 (ENSNLEG00000005654) #21	ENSNLEG00000033045	MAP3K20 (ENSNLEG00000005760) #22	CDCA7 (ENSNLEG00000005787) #23	ENSNLEG00000031261	ENSNLEG00000036050	SP3 (ENSNLEG00000005812) #24	OLA1 (ENSNLEG00000005817) #25	ENSNLEG00000030268	ENSNLEG00000033171	ENSNLEG00000005869 #27	SCRN3 (ENSNLEG00000005880) #28	GPR155 (ENSNLEG00000005896) #29	ENSNLEG00000033625	WIPF1 (ENSNLEG00000005907)	CHRNA1 (ENSNLEG00000005914) #32	CHN1 (ENSNLEG00000005923) #33	ENSNLEG00000028605
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00950000182827.A.i.b	ENSGT00390000001859
Rhinopithecus	ANCESTRAL SPECIES	68	ENSGT00910000147411.a.b	ENSGT00950000182984.b.a.b.i	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b.d #25	ENSGT00940000162304 #26	ENSGT00730000111135.g.b #27	ENSGT00730000111135.g.a.b #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33
Golden snub-nosed monkey	MODERN SPECIES	2028	METTL8 (ENSRROG00000030685)	DCAF17 (ENSRROG00000020695) #7	CYBRD1 (ENSRROG00000009823) #8	DYNC1I2 (ENSRROG00000041352) #10	SLC25A12 (ENSRROG00000038322) #11	HAT1 (ENSRROG00000043073) #14	METAP1D (ENSRROG00000037420) #15	DLX1 (ENSRROG00000033531) #16	ENSRROG00000032743 #18	ITGA6 (ENSRROG00000036224) #19	ENSRROG00000042717	PDK1 (ENSRROG00000044391) #20	ENSRROG00000044001	ENSRROG00000045616	RAPGEF4 (ENSRROG00000023403) #21	MAP3K20 (ENSRROG00000029892) #22	ENSRROG00000044378 #23
Black snub-nosed monkey	MODERN SPECIES	1870														ENSRBIG00000039311	RAPGEF4 (ENSRBIG00000042553) #21	MAP3K20 (ENSRBIG00000032964) #22	CDCA7 (ENSRBIG00000037944) #23	ENSRBIG00000035710	SP3 (ENSRBIG00000030644) #24	OLA1 (ENSRBIG00000006151) #25	SP9 (ENSRBIG00000041465) #26	ENSRBIG00000043539 #27	SCRN3 (ENSRBIG00000032103) #28	GPR155 (ENSRBIG00000027170) #29	WIPF1 (ENSRBIG00000041160)	CHRNA1 (ENSRBIG00000024590) #32	CHN1 (ENSRBIG00000044556) #33
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00950000182827.A.i.b	ENSGT00390000001859
Vervet Monkey	MODERN SPECIES	1	GAD1 (ENSCSAG00000014998)	GORASP2 (ENSCSAG00000014990)	TLK1 (ENSCSAG00000014963)	METTL8 (ENSCSAG00000014891)	DCAF17 (ENSCSAG00000014869) #7	CYBRD1 (ENSCSAG00000014840) #8	DYNC1I2 (ENSCSAG00000014831) #10	SLC25A12 (ENSCSAG00000014814) #11	HAT1 (ENSCSAG00000014790) #14	METAP1D (ENSCSAG00000014782) #15	DLX1 (ENSCSAG00000014773) #16	DLX2 (ENSCSAG00000014766) #18	ITGA6 (ENSCSAG00000014750) #19	PDK1 (ENSCSAG00000014733) #20	RAPGEF4 (ENSCSAG00000014720) #21	ENSCSAG00000014706 #22	ENSCSAG00000014701	CDCA7 (ENSCSAG00000014699) #23	SP3 (ENSCSAG00000014689) #24	OLA1 (ENSCSAG00000014670) #25	SP9 (ENSCSAG00000014648) #26	CIR1 (ENSCSAG00000014627) #27	SCRN3 (ENSCSAG00000014584) #28	GPR155 (ENSCSAG00000014572) #29	WIPF1 (ENSCSAG00000014556)	CHRNA1 (ENSCSAG00000014545) #32	CHN1 (ENSCSAG00000014539) #33	ATF2 (ENSCSAG00000014523) #34	LNPK (ENSCSAG00000014506)	EVX2 (ENSCSAG00000014486)	HOXD13 (ENSCSAG00000014475)
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00950000182984.b.a.b.g.a	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000165163	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00950000182827.A.i.b
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00950000182984.b.a.b.g.a	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00950000183198.c.b.a	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000165163	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Olive baboon	MODERN SPECIES	1	TLK1 (ENSPANG00000029725)	ENSPANG00000039523	METTL8 (ENSPANG00000005672)	DCAF17 (ENSPANG00000016308) #7	CYBRD1 (ENSPANG00000042977) #8	ENSPANG00000047908	DYNC1I2 (ENSPANG00000025360) #10	SLC25A12 (ENSPANG00000007748) #11	HAT1 (ENSPANG00000013374) #14	METAP1D (ENSPANG00000007792) #15	DLX1 (ENSPANG00000003770) #16	DLX2 (ENSPANG00000022975) #18	ITGA6 (ENSPANG00000016462) #19	PDK1 (ENSPANG00000018423) #20	RAPGEF4 (ENSPANG00000007791) #21	MAP3K20 (ENSPANG00000000071) #22	CDCA7 (ENSPANG00000024998) #23	ENSPANG00000050966	SP3 (ENSPANG00000005418) #24	ENSPANG00000037160	OLA1 (ENSPANG00000020854) #25	ENSPANG00000035758	SP9 (ENSPANG00000051025) #26	CIR1 (ENSPANG00000033102) #27	SCRN3 (ENSPANG00000001316) #28	GPR155 (ENSPANG00000006559) #29	WIPF1 (ENSPANG00000019541)	CHRNA1 (ENSPANG00000007790) #32	CHN1 (ENSPANG00000008236) #33	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #34
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00950000182984.b.a.b.g.a	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT00910000148590	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00950000183198.c.b.a	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000165163	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Drill	MODERN SPECIES	1072	ENSMLEG00000037703	METTL8 (ENSMLEG00000029322)	DCAF17 (ENSMLEG00000010644) #7	ENSMLEG00000034254	DYNC1I2 (ENSMLEG00000032461) #10	SLC25A12 (ENSMLEG00000036561) #11	HAT1 (ENSMLEG00000030988) #14	METAP1D (ENSMLEG00000032246) #15	DLX1 (ENSMLEG00000032734) #16	DLX2 (ENSMLEG00000039269) #18	ITGA6 (ENSMLEG00000038882) #19	ENSMLEG00000026649	PDK1 (ENSMLEG00000031983) #20	ENSMLEG00000036771	RAPGEF4 (ENSMLEG00000043070) #21	MAP3K20 (ENSMLEG00000035407) #22	CDCA7 (ENSMLEG00000036199) #23	SP3 (ENSMLEG00000022357) #24	ENSMLEG00000042096	OLA1 (ENSMLEG00000040175) #25	CIR1 (ENSMLEG00000009014) #27	SCRN3 (ENSMLEG00000043626) #28	GPR155 (ENSMLEG00000027961) #29	ENSMLEG00000029654	WIPF1 (ENSMLEG00000001484)	CHRNA1 (ENSMLEG00000043089) #32	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406) #33	ATF2 (ENSMLEG00000035167) #34	ATP5MC3 (ENSMLEG00000043816) #35	ENSMLEG00000001270
Sooty mangabey	MODERN SPECIES	570	ENSCATG00000030565	METTL8 (ENSCATG00000041402)	DCAF17 (ENSCATG00000033362) #7	ENSCATG00000041682	CYBRD1 (ENSCATG00000035346) #8	DYNC1I2 (ENSCATG00000029930) #10	SLC25A12 (ENSCATG00000036790) #11	HAT1 (ENSCATG00000044185) #14	METAP1D (ENSCATG00000044416) #15	DLX1 (ENSCATG00000037027) #16	DLX2 (ENSCATG00000024031) #18	ITGA6 (ENSCATG00000037277) #19	PDK1 (ENSCATG00000035483) #20	RAPGEF4 (ENSCATG00000033510) #21	ENSCATG00000036110	MAP3K20 (ENSCATG00000038986) #22	CDCA7 (ENSCATG00000035553) #23	ENSCATG00000036945	SP3 (ENSCATG00000028784) #24	ENSCATG00000038920 #25	ENSCATG00000031189	SP9 (ENSCATG00000031475) #26	CIR1 (ENSCATG00000034814) #27	SCRN3 (ENSCATG00000032178) #28	GPR155 (ENSCATG00000033300) #29	WIPF1 (ENSCATG00000022645)	CHRNA1 (ENSCATG00000030584) #32	CHN1 (ENSCATG00000036640) #33	ENSCATG00000035911	ATF2 (ENSCATG00000005694) #34	ATP5MC3 (ENSCATG00000035329) #35
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b.g.a	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00910000146880	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000162422.d	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000165163	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00390000018390.jc.n	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Pig-tailed macaque	MODERN SPECIES	585	GORASP2 (ENSMNEG00000031335)	ENSMNEG00000021199	METTL8 (ENSMNEG00000028368)	DCAF17 (ENSMNEG00000039440) #7	CYBRD1 (ENSMNEG00000038178) #8	DYNC1I2 (ENSMNEG00000033393) #10	SLC25A12 (ENSMNEG00000035217) #11	HAT1 (ENSMNEG00000033154) #14	METAP1D (ENSMNEG00000030646) #15	DLX1 (ENSMNEG00000036212) #16	DLX2 (ENSMNEG00000042024) #18	ITGA6 (ENSMNEG00000040472) #19	PDK1 (ENSMNEG00000044795) #20	ENSMNEG00000040448	RAPGEF4 (ENSMNEG00000030581) #21	MAP3K20 (ENSMNEG00000044858) #22	CDCA7 (ENSMNEG00000033719) #23	ENSMNEG00000039997	SP3 (ENSMNEG00000042516) #24	OLA1 (ENSMNEG00000040767) #25	SP9 (ENSMNEG00000034757) #26	CIR1 (ENSMNEG00000045151) #27	SCRN3 (ENSMNEG00000035295) #28	GPR155 (ENSMNEG00000028550) #29	ENSMNEG00000031252	WIPF1 (ENSMNEG00000045560)	CHRNA1 (ENSMNEG00000043912) #32	ENSMNEG00000009103	CHN1 (ENSMNEG00000033120) #33	ATF2 (ENSMNEG00000037988) #34	ATP5MC3 (ENSMNEG00000029106) #35
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00950000182984.b.a.b.g.a	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000166143.A.a.b.b.b.a.b.b.b.a	ENSGT00940000155353 #19	ENSGT00980000202811	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099.a #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135.g #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00950000182827.A.j	ENSGT00390000001859
Rhesus	MODERN SPECIES	3	DCAF17 (ENSMMUG00000023370) #7	CYBRD1 (ENSMMUG00000055504) #8	DYNC1I2 (ENSMMUG00000007301) #10	ENSMMUG00000056746	SLC25A12 (ENSMMUG00000007310) #11	HAT1 (ENSMMUG00000007313) #14	METAP1D (ENSMMUG00000007314) #15	DLX1 (ENSMMUG00000052354) #16	DLX2 (ENSMMUG00000050910) #18	ENSMMUG00000053699	ITGA6 (ENSMMUG00000002370) #19	ENSMMUG00000054462	ENSMMUG00000061038	PDK1 (ENSMMUG00000022553) #20	RAPGEF4 (ENSMMUG00000020792) #21	MAP3K20 (ENSMMUG00000014672) #22	CDCA7 (ENSMMUG00000014228) #23	ENSMMUG00000010554	SP3 (ENSMMUG00000021818) #24	ENSMMUG00000060201	OLA1 (ENSMMUG00000007092) #25	SP9 (ENSMMUG00000023005) #26	CIR1 (ENSMMUG00000023006) #27	SCRN3 (ENSMMUG00000023009) #28	GPR155 (ENSMMUG00000021012) #29	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593)	CHRNA1 (ENSMMUG00000021796) #32	CHN1 (ENSMMUG00000021797) #33	ATF2 (ENSMMUG00000003947) #34	ATP5MC3 (ENSMMUG00000003954) #35
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000052717	METTL8 (ENSMFAG00000032752)	DCAF17 (ENSMFAG00000065649) #7	CYBRD1 (ENSMFAG00000032778) #8	DYNC1I2 (ENSMFAG00000046037) #10	SLC25A12 (ENSMFAG00000036961) #11	HAT1 (ENSMFAG00000044656) #14	METAP1D (ENSMFAG00000001723) #15	DLX1 (ENSMFAG00000039931) #16	DLX2 (ENSMFAG00000045147) #18	ENSMFAG00000049470	ITGA6 (ENSMFAG00000038164) #19	ENSMFAG00000047501	PDK1 (ENSMFAG00000043197) #20	RAPGEF4 (ENSMFAG00000044653) #21	MAP3K20 (ENSMFAG00000001160) #22	CDCA7 (ENSMFAG00000033844) #23	ENSMFAG00000051912	SP3 (ENSMFAG00000001253) #24	ENSMFAG00000052622	OLA1 (ENSMFAG00000044124) #25	SP9 (ENSMFAG00000035384) #26	GPR155 (ENSMFAG00000035341) #29	SCRN3 (ENSMFAG00000042925) #28	ENSMFAG00000056942	ENSMFAG00000039499	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165)	CHRNA1 (ENSMFAG00000042992) #32	CHN1 (ENSMFAG00000002404) #33	ATF2 (ENSMFAG00000002278) #34
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000163262.a	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Xenarthra	ANCESTRAL SPECIES	11															ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938
Armadillo	MODERN SPECIES	3580															RAPGEF4 (ENSDNOG00000006875) #21	MAP3K20 (ENSDNOG00000006902) #22	CDCA7 (ENSDNOG00000019442) #23	SP3 (ENSDNOG00000048996) #24	ENSDNOG00000044516	OLA1 (ENSDNOG00000010630) #25	SP9 (ENSDNOG00000019150) #26	CIR1 (ENSDNOG00000033913) #27	SCRN3 (ENSDNOG00000035179) #28	GPR155 (ENSDNOG00000007590) #29	ENSDNOG00000041872 #30	ENSDNOG00000033898	CHRNA1 (ENSDNOG00000016153) #32	CHN1 (ENSDNOG00000037568) #33	ATF2 (ENSDNOG00000015229) #34	ENSDNOG00000044678 #35	LNPK (ENSDNOG00000039308)
Afrotheria	ANCESTRAL SPECIES																	ENSGT00940000161352 #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00940000161352 #22
Hyrax	MODERN SPECIES	45																MAP3K20 (ENSPCAG00000003774) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00390000008686.d	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000173501
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000173501
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00570000080031	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000173501
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.a #35	ENSGT00390000001859	ENSGT00940000173501	ENSGT00940000161025
Common wonbat	MODERN SPECIES	1018	GAD1 (ENSVURG00010020050)	GORASP2 (ENSVURG00010020039)	TLK1 (ENSVURG00010019947)	METTL8 (ENSVURG00010019916)	DCAF17 (ENSVURG00010019901) #7	CYBRD1 (ENSVURG00010019891) #8	DYNC1I2 (ENSVURG00010019867) #10	SLC25A12 (ENSVURG00010019841) #11	HAT1 (ENSVURG00010019826) #14	METAP1D (ENSVURG00010019791) #15	DLX1 (ENSVURG00010019779) #16	DLX2 (ENSVURG00010019774) #18	ITGA6 (ENSVURG00010019751) #19	PDK1 (ENSVURG00010019726) #20	RAPGEF4 (ENSVURG00010019514) #21	MAP3K20 (ENSVURG00010019465) #22	ENSVURG00010019448 #23	SP3 (ENSVURG00010019427) #24	OLA1 (ENSVURG00010019396) #25	SP9 (ENSVURG00010019382) #26	CIR1 (ENSVURG00010019374) #27	SCRN3 (ENSVURG00010019366) #28	GPR155 (ENSVURG00010019311) #29	WIPF1 (ENSVURG00010019295)	CHRNA1 (ENSVURG00010019276) #32	CHN1 (ENSVURG00010019258) #33	ATF2 (ENSVURG00010019225) #34	ENSVURG00010019213 #35	LNPK (ENSVURG00010019192)	EVX2 (ENSVURG00010019179)	HOXD13 (ENSVURG00010019176)
koala	MODERN SPECIES	40	GORASP2 (ENSPCIG00000002348)	TLK1 (ENSPCIG00000002305)	ENSPCIG00000002283	METTL8 (ENSPCIG00000002269)	DCAF17 (ENSPCIG00000002251) #7	CYBRD1 (ENSPCIG00000002233) #8	DYNC1I2 (ENSPCIG00000022788) #10	SLC25A12 (ENSPCIG00000022771) #11	HAT1 (ENSPCIG00000030475) #14	METAP1D (ENSPCIG00000015769) #15	DLX1 (ENSPCIG00000015772) #16	DLX2 (ENSPCIG00000015774) #18	ITGA6 (ENSPCIG00000022252) #19	PDK1 (ENSPCIG00000022240) #20	RAPGEF4 (ENSPCIG00000028745) #21	MAP3K20 (ENSPCIG00000022211) #22	CDCA7 (ENSPCIG00000022203) #23	SP3 (ENSPCIG00000016653) #24	OLA1 (ENSPCIG00000026763) #25	SP9 (ENSPCIG00000027340) #26	CIR1 (ENSPCIG00000027338) #27	SCRN3 (ENSPCIG00000027336) #28	ENSPCIG00000027329	GPR155 (ENSPCIG00000026300) #29	WIPF1 (ENSPCIG00000026292)	ENSPCIG00000034435	CHRNA1 (ENSPCIG00000026290) #32	CHN1 (ENSPCIG00000026288) #33	ATF2 (ENSPCIG00000026284) #34	ENSPCIG00000026281 #35	LNPK (ENSPCIG00000029137)
Tasmanian devil	MODERN SPECIES	2	GAD1 (ENSSHAG00000011468)	GORASP2 (ENSSHAG00000012230)	TLK1 (ENSSHAG00000012625)	METTL8 (ENSSHAG00000013987)	DCAF17 (ENSSHAG00000014466) #7	CYBRD1 (ENSSHAG00000029634) #8	DYNC1I2 (ENSSHAG00000015273) #10	SLC25A12 (ENSSHAG00000015466) #11	HAT1 (ENSSHAG00000015900) #14	METAP1D (ENSSHAG00000016285) #15	DLX1 (ENSSHAG00000016515) #16	DLX2 (ENSSHAG00000030586) #18	ITGA6 (ENSSHAG00000017311) #19	PDK1 (ENSSHAG00000017496) #20	RAPGEF4 (ENSSHAG00000006723) #21	MAP3K20 (ENSSHAG00000008034) #22	ENSSHAG00000010185 #23	ENSSHAG00000012578	ENSSHAG00000024673	ENSSHAG00000013923 #24	OLA1 (ENSSHAG00000020604) #25	SP9 (ENSSHAG00000022043) #26	CIR1 (ENSSHAG00000015674) #27	SCRN3 (ENSSHAG00000015809) #28	GPR155 (ENSSHAG00000001210) #29	WIPF1 (ENSSHAG00000005304)	CHRNA1 (ENSSHAG00000007749) #32	CHN1 (ENSSHAG00000008483) #33	ATF2 (ENSSHAG00000029247) #34	ATP5MC3 (ENSSHAG00000028674) #35	LNPK (ENSSHAG00000031133)
Opossum	MODERN SPECIES	3	GORASP2 (ENSMODG00000024782)	ENSMODG00000043975	TLK1 (ENSMODG00000008652)	METTL8 (ENSMODG00000008665)	DCAF17 (ENSMODG00000008711) #7	CYBRD1 (ENSMODG00000008729) #8	DYNC1I2 (ENSMODG00000008772) #10	SLC25A12 (ENSMODG00000008847) #11	HAT1 (ENSMODG00000008870) #14	METAP1D (ENSMODG00000008888) #15	DLX1 (ENSMODG00000008892) #16	DLX2 (ENSMODG00000008899) #18	ITGA6 (ENSMODG00000009009) #19	ENSMODG00000009035 #20	RAPGEF4 (ENSMODG00000009089) #21	MAP3K20 (ENSMODG00000009134) #22	CDCA7 (ENSMODG00000009162) #23	ENSMODG00000024765	SP3 (ENSMODG00000009184) #24	OLA1 (ENSMODG00000009296) #25	SP9 (ENSMODG00000009303) #26	CIR1 (ENSMODG00000037714) #27	SCRN3 (ENSMODG00000009337) #28	GPR155 (ENSMODG00000009362) #29	WIPF1 (ENSMODG00000009366)	CHRNA1 (ENSMODG00000009414) #32	CHN1 (ENSMODG00000009464) #33	ATF2 (ENSMODG00000009514) #34	ENSMODG00000009520 #35	ENSMODG00000047401	ENSMODG00000009536
Sauria	ANCESTRAL SPECIES		ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Archosauria	ANCESTRAL SPECIES	6	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35
Aves	ANCESTRAL SPECIES	8	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
African ostrich	MODERN SPECIES	838	GAD1 (ENSSCUG00000017423)	GORASP2 (ENSSCUG00000017424)	TLK1 (ENSSCUG00000017427)	METTL8 (ENSSCUG00000017429)	DCAF17 (ENSSCUG00000017430) #7	CYBRD1 (ENSSCUG00000017431) #8	DYNC1I2 (ENSSCUG00000017432) #10	SLC25A12 (ENSSCUG00000017434) #11	HAT1 (ENSSCUG00000017435) #14	METAP1D (ENSSCUG00000017436) #15	DLX1 (ENSSCUG00000017437) #16	ITGA6 (ENSSCUG00000017438) #19	PDK1 (ENSSCUG00000017440) #20	ENSSCUG00000017445	RAPGEF4 (ENSSCUG00000017451) #21	MAP3K20 (ENSSCUG00000017452) #22	ENSSCUG00000017453	CDCA7 (ENSSCUG00000017454) #23	SP3 (ENSSCUG00000017467) #24	OLA1 (ENSSCUG00000017471) #25	CIR1 (ENSSCUG00000017475) #27	SCRN3 (ENSSCUG00000017477) #28	GPR155 (ENSSCUG00000017479) #29	ENSSCUG00000017481	CHRNA1 (ENSSCUG00000017484) #32	CHN1 (ENSSCUG00000017488) #33	ATF2 (ENSSCUG00000017491) #34	ATP5MC3 (ENSSCUG00000017492) #35	LNPK (ENSSCUG00000017495)	HOXD12 (ENSSCUG00000017497)	HOXD11 (ENSSCUG00000017498)
Neognathae	ANCESTRAL SPECIES	6	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Golden eagle	MODERN SPECIES	22	GORASP2 (ENSACCG00020008967)	TLK1 (ENSACCG00020008936)	METTL8 (ENSACCG00020008878)	DCAF17 (ENSACCG00020008844) #7	CYBRD1 (ENSACCG00020008827) #8	DYNC1I2 (ENSACCG00020008735) #10	SLC25A12 (ENSACCG00020008546) #11	HAT1 (ENSACCG00020008521) #14	METAP1D (ENSACCG00020008498) #15	DLX1 (ENSACCG00020008478) #16	DLX2 (ENSACCG00020008470) #18	ITGA6 (ENSACCG00020008441) #19	PDK1 (ENSACCG00020008395) #20	ENSACCG00020004271	RAPGEF4 (ENSACCG00020004198) #21	MAP3K20 (ENSACCG00020004096) #22	CDCA7 (ENSACCG00020004079) #23	SP3 (ENSACCG00020004066) #24	OLA1 (ENSACCG00020004056) #25	SP9 (ENSACCG00020004044) #26	CIR1 (ENSACCG00020004036) #27	SCRN3 (ENSACCG00020004026) #28	GPR155 (ENSACCG00020004015) #29	WIPF1 (ENSACCG00020004004)	CHRNA1 (ENSACCG00020003985) #32	CHN1 (ENSACCG00020003968) #33	ATF2 (ENSACCG00020003942) #34	ATP5MC3 (ENSACCG00020003917) #35	LNPK (ENSACCG00020003901)	EVX2 (ENSACCG00020003885)	HOXD13 (ENSACCG00020003861)
Kakapo	MODERN SPECIES	22	GAD1 (ENSSHBG00005004688)	GORASP2 (ENSSHBG00005004670)	TLK1 (ENSSHBG00005004663)	METTL8 (ENSSHBG00005004641)	DCAF17 (ENSSHBG00005004615) #7	CYBRD1 (ENSSHBG00005004592) #8	DYNC1I2 (ENSSHBG00005004579) #10	SLC25A12 (ENSSHBG00005004543) #11	HAT1 (ENSSHBG00005004528) #14	METAP1D (ENSSHBG00005004520) #15	DLX1 (ENSSHBG00005004511) #16	DLX2 (ENSSHBG00005004508) #18	ITGA6 (ENSSHBG00005004486) #19	PDK1 (ENSSHBG00005004476) #20	ENSSHBG00005004460	MAP3K20 (ENSSHBG00005004430) #22	RAPGEF4 (ENSSHBG00005003811) #21	CDCA7 (ENSSHBG00005003621) #23	SP3 (ENSSHBG00005003600) #24	OLA1 (ENSSHBG00005003576) #25	SP9 (ENSSHBG00005003570) #26	CIR1 (ENSSHBG00005003557) #27	SCRN3 (ENSSHBG00005003550) #28	GPR155 (ENSSHBG00005003538) #29	WIPF1 (ENSSHBG00005003524)	CHRNA1 (ENSSHBG00005003452) #32	CHN1 (ENSSHBG00005003384) #33	ATF2 (ENSSHBG00005003358) #34	ATP5MC3 (ENSSHBG00005003340) #35	LNPK (ENSSHBG00005003318)	EVX2 (ENSSHBG00005003303)
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Great tit	MODERN SPECIES	27	ENSPMJG00000018676	TLK1 (ENSPMJG00000018675)	METTL8 (ENSPMJG00000018674)	DCAF17 (ENSPMJG00000018673) #7	CYBRD1 (ENSPMJG00000018672) #8	DYNC1I2 (ENSPMJG00000018590) #10	SLC25A12 (ENSPMJG00000018589) #11	HAT1 (ENSPMJG00000018588) #14	METAP1D (ENSPMJG00000018587) #15	DLX1 (ENSPMJG00000018586) #16	DLX2 (ENSPMJG00000018585) #18	ITGA6 (ENSPMJG00000018583) #19	PDK1 (ENSPMJG00000018582) #20	ENSPMJG00000018581	RAPGEF4 (ENSPMJG00000018579) #21	MAP3K20 (ENSPMJG00000018578) #22	CDCA7 (ENSPMJG00000018577) #23	SP3 (ENSPMJG00000018573) #24	OLA1 (ENSPMJG00000018572) #25	SP9 (ENSPMJG00000018570) #26	CIR1 (ENSPMJG00000018569) #27	SCRN3 (ENSPMJG00000018568) #28	GPR155 (ENSPMJG00000018567) #29	ENSPMJG00000018566	CHRNA1 (ENSPMJG00000018564) #32	CHN1 (ENSPMJG00000018538) #33	ATF2 (ENSPMJG00000018537) #34	ATP5MC3 (ENSPMJG00000018536) #35	LNPK (ENSPMJG00000018533)	EVX2 (ENSPMJG00000018532)	HOXD13 (ENSPMJG00000018531)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Flycatcher	MODERN SPECIES	26	ENSFALG00000026958	TLK1 (ENSFALG00000001976)	METTL8 (ENSFALG00000001979)	DCAF17 (ENSFALG00000001985) #7	CYBRD1 (ENSFALG00000027345) #8	DYNC1I2 (ENSFALG00000001999) #10	SLC25A12 (ENSFALG00000002002) #11	HAT1 (ENSFALG00000002007) #14	METAP1D (ENSFALG00000025797) #15	DLX1 (ENSFALG00000002025) #16	DLX2 (ENSFALG00000028531) #18	ITGA6 (ENSFALG00000002030) #19	PDK1 (ENSFALG00000024030) #20	ENSFALG00000002036	RAPGEF4 (ENSFALG00000002257) #21	MAP3K20 (ENSFALG00000002910) #22	CDCA7 (ENSFALG00000002918) #23	SP3 (ENSFALG00000002922) #24	OLA1 (ENSFALG00000002944) #25	SP9 (ENSFALG00000023524) #26	CIR1 (ENSFALG00000002994) #27	SCRN3 (ENSFALG00000003013) #28	GPR155 (ENSFALG00000003023) #29	ENSFALG00000027529	ENSFALG00000003030	CHRNA1 (ENSFALG00000003034) #32	CHN1 (ENSFALG00000003058) #33	ATF2 (ENSFALG00000003087) #34	ATP5MC3 (ENSFALG00000003095) #35	LNPK (ENSFALG00000003104)	EVX2 (ENSFALG00000003109)
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Medium ground finch	MODERN SPECIES	1	GORASP2 (ENSGFOG00000006029)	ENSGFOG00000006033	TLK1 (ENSGFOG00000006038)	METTL8 (ENSGFOG00000006054)	DCAF17 (ENSGFOG00000006069) #7	CYBRD1 (ENSGFOG00000006086) #8	DYNC1I2 (ENSGFOG00000006101) #10	SLC25A12 (ENSGFOG00000006130) #11	HAT1 (ENSGFOG00000006148) #14	METAP1D (ENSGFOG00000006168) #15	DLX1 (ENSGFOG00000006179) #16	ITGA6 (ENSGFOG00000006192) #19	PDK1 (ENSGFOG00000006234) #20	ENSGFOG00000006252	RAPGEF4 (ENSGFOG00000006285) #21	MAP3K20 (ENSGFOG00000006330) #22	CDCA7 (ENSGFOG00000006353) #23	SP3 (ENSGFOG00000006378) #24	OLA1 (ENSGFOG00000006405) #25	CIR1 (ENSGFOG00000006417) #27	SCRN3 (ENSGFOG00000006425) #28	GPR155 (ENSGFOG00000006436) #29	ENSGFOG00000006445	CHRNA1 (ENSGFOG00000006450) #32	CHN1 (ENSGFOG00000006455) #33	ENSGFOG00000006464	ATF2 (ENSGFOG00000006478) #34	ATP5MC3 (ENSGFOG00000006500) #35	LNPK (ENSGFOG00000006507)	HOXD13 (ENSGFOG00000006517)	HOXD12 (ENSGFOG00000006522)
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Common canary	MODERN SPECIES	8	ENSSCAG00000015870	TLK1 (ENSSCAG00000015872)	METTL8 (ENSSCAG00000015877)	DCAF17 (ENSSCAG00000015882) #7	CYBRD1 (ENSSCAG00000015889) #8	DYNC1I2 (ENSSCAG00000015893) #10	SLC25A12 (ENSSCAG00000015897) #11	HAT1 (ENSSCAG00000015901) #14	METAP1D (ENSSCAG00000015910) #15	DLX1 (ENSSCAG00000015925) #16	DLX2 (ENSSCAG00000015928) #18	ITGA6 (ENSSCAG00000015932) #19	PDK1 (ENSSCAG00000015939) #20	ENSSCAG00000015944	RAPGEF4 (ENSSCAG00000015968) #21	MAP3K20 (ENSSCAG00000016014) #22	ENSSCAG00000016018	CDCA7 (ENSSCAG00000016020) #23	SP3 (ENSSCAG00000016025) #24	OLA1 (ENSSCAG00000016031) #25	CIR1 (ENSSCAG00000016033) #27	SCRN3 (ENSSCAG00000016037) #28	GPR155 (ENSSCAG00000016043) #29	ENSSCAG00000016047	CHRNA1 (ENSSCAG00000016051) #32	CHN1 (ENSSCAG00000016062) #33	ATF2 (ENSSCAG00000016084) #34	ATP5MC3 (ENSSCAG00000016089) #35	LNPK (ENSSCAG00000016094)	HOXD13 (ENSSCAG00000016098)	HOXD12 (ENSSCAG00000016102)
Zebra finch	MODERN SPECIES	29	GORASP2 (ENSTGUG00000008120)	TLK1 (ENSTGUG00000008143)	METTL8 (ENSTGUG00000008185)	DCAF17 (ENSTGUG00000008201) #7	CYBRD1 (ENSTGUG00000018832) #8	DYNC1I2 (ENSTGUG00000008226) #10	SLC25A12 (ENSTGUG00000008293) #11	HAT1 (ENSTGUG00000008338) #14	METAP1D (ENSTGUG00000008360) #15	DLX1 (ENSTGUG00000008373) #16	DLX2 (ENSTGUG00000008381) #18	ITGA6 (ENSTGUG00000008382) #19	PDK1 (ENSTGUG00000008513) #20	ENSTGUG00000008541	RAPGEF4 (ENSTGUG00000008556) #21	MAP3K20 (ENSTGUG00000026276) #22	CDCA7 (ENSTGUG00000008676) #23	SP3 (ENSTGUG00000008690) #24	OLA1 (ENSTGUG00000008710) #25	SP9 (ENSTGUG00000025759) #26	CIR1 (ENSTGUG00000008746) #27	SCRN3 (ENSTGUG00000008770) #28	GPR155 (ENSTGUG00000008786) #29	WIPF1 (ENSTGUG00000008798)	CHRNA1 (ENSTGUG00000008827) #32	CHN1 (ENSTGUG00000008848) #33	ATF2 (ENSTGUG00000008880) #34	ATP5MC3 (ENSTGUG00000008907) #35	LNPK (ENSTGUG00000021038)	EVX2 (ENSTGUG00000008931)	HOXD13 (ENSTGUG00000022083)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296.p	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296.p	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Japanese quail	MODERN SPECIES	25	GORASP2 (ENSCJPG00005018012)	TLK1 (ENSCJPG00005017830)	METTL8 (ENSCJPG00005017829)	DCAF17 (ENSCJPG00005017823) #7	CYBRD1 (ENSCJPG00005017822) #8	DYNC1I2 (ENSCJPG00005017821) #10	SLC25A12 (ENSCJPG00005017820) #11	HAT1 (ENSCJPG00005017819) #14	METAP1D (ENSCJPG00005017818) #15	DLX1 (ENSCJPG00005017817) #16	DLX2 (ENSCJPG00005017816) #18	ITGA6 (ENSCJPG00005017815) #19	PDK1 (ENSCJPG00005017763) #20	ENSCJPG00005017762	RAPGEF4 (ENSCJPG00005017761) #21	MAP3K20 (ENSCJPG00005017760) #22	CDCA7 (ENSCJPG00005017759) #23	SP3 (ENSCJPG00005017754) #24	OLA1 (ENSCJPG00005017752) #25	SP9 (ENSCJPG00005017751) #26	CIR1 (ENSCJPG00005017750) #27	SCRN3 (ENSCJPG00005017749) #28	GPR155 (ENSCJPG00005017748) #29	ENSCJPG00005017747	CHRNA1 (ENSCJPG00005017746) #32	CHN1 (ENSCJPG00005017745) #33	ATF2 (ENSCJPG00005017743) #34	ATP5MC3 (ENSCJPG00005017742) #35	LNPK (ENSCJPG00005017736)	EVX2 (ENSCJPG00005017735)	HOXD13 (ENSCJPG00005017734)
Anatidae	ANCESTRAL SPECIES	10	ENSGT00960000189407	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296.p	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Pink-footed goose	MODERN SPECIES	20	GORASP2 (ENSABRG00000023186)	TLK1 (ENSABRG00000023187)	METTL8 (ENSABRG00000023188)	DCAF17 (ENSABRG00000023189) #7	CYBRD1 (ENSABRG00000023190) #8	DYNC1I2 (ENSABRG00000023191) #10	SLC25A12 (ENSABRG00000023192) #11	HAT1 (ENSABRG00000023193) #14	METAP1D (ENSABRG00000023194) #15	DLX1 (ENSABRG00000023195) #16	DLX2 (ENSABRG00000023196) #18	ITGA6 (ENSABRG00000023197) #19	PDK1 (ENSABRG00000023198) #20	ENSABRG00000023199	RAPGEF4 (ENSABRG00000023200) #21	MAP3K20 (ENSABRG00000023201) #22	CDCA7 (ENSABRG00000023202) #23	SP3 (ENSABRG00000000846) #24	OLA1 (ENSABRG00000001082) #25	SP9 (ENSABRG00000001188) #26	CIR1 (ENSABRG00000001225) #27	SCRN3 (ENSABRG00000001275) #28	GPR155 (ENSABRG00000001308) #29	WIPF1 (ENSABRG00000002070)	CHRNA1 (ENSABRG00000002084) #32	CHN1 (ENSABRG00000002131) #33	ATF2 (ENSABRG00000002181) #34	ATP5MC3 (ENSABRG00000002218) #35	LNPK (ENSABRG00000002302)	EVX2 (ENSABRG00000002357)	HOXD13 (ENSABRG00000002397)
Duck	MODERN SPECIES	25	GAD1 (ENSAPLG00000005082)	GORASP2 (ENSAPLG00000004733)	ENSAPLG00000016514	TLK1 (ENSAPLG00000004352)	METTL8 (ENSAPLG00000004140)	DCAF17 (ENSAPLG00000003935) #7	CYBRD1 (ENSAPLG00000003893) #8	DYNC1I2 (ENSAPLG00000003249) #10	SLC25A12 (ENSAPLG00000002863) #11	HAT1 (ENSAPLG00000002701) #14	METAP1D (ENSAPLG00000002546) #15	ITGA6 (ENSAPLG00000015601) #19	PDK1 (ENSAPLG00000015342) #20	ENSAPLG00000015004	RAPGEF4 (ENSAPLG00000013981) #21	MAP3K20 (ENSAPLG00000013963) #22	ENSAPLG00000008352	CDCA7 (ENSAPLG00000008313) #23	SP3 (ENSAPLG00000008201) #24	OLA1 (ENSAPLG00000008147) #25	SP9 (ENSAPLG00000026718) #26	CIR1 (ENSAPLG00000008087) #27	SCRN3 (ENSAPLG00000008066) #28	GPR155 (ENSAPLG00000008000) #29	ENSAPLG00000025159	CHRNA1 (ENSAPLG00000007803) #32	CHN1 (ENSAPLG00000007680) #33	ATF2 (ENSAPLG00000007673) #34	ATP5MC3 (ENSAPLG00000025020) #35	LNPK (ENSAPLG00000008383)	ENSAPLG00000021400
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Chinese turtle	MODERN SPECIES	1876														ENSPSIG00000008391	ENSPSIG00000001427	ENSPSIG00000009228 #22	BACH2 (ENSPSIG00000009237)	GJA10 (ENSPSIG00000009242)	ENSPSIG00000009257	MDN1 (ENSPSIG00000009264)	ENSPSIG00000009909	ANKRD6 (ENSPSIG00000009920)	RRAGD (ENSPSIG00000009985)	UBE2J1 (ENSPSIG00000010093)	GABRR2 (ENSPSIG00000010102)	GABRR1 (ENSPSIG00000010456)	PM20D2 (ENSPSIG00000010966)	RNGTT (ENSPSIG00000010976)	CNR1 (ENSPSIG00000001432)	SPACA1 (ENSPSIG00000011248)	ENSPSIG00000001439
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Abingdon island giant tortoise	MODERN SPECIES	1035													ENSCABG00000005949	ENSCABG00000005948	RAPGEF4 (ENSCABG00000005944) #21	MAP3K20 (ENSCABG00000005938) #22	CDCA7 (ENSCABG00000005887) #23	SP3 (ENSCABG00000005879) #24	OLA1 (ENSCABG00000005875) #25	SP9 (ENSCABG00000005873) #26	CIR1 (ENSCABG00000005871) #27	SCRN3 (ENSCABG00000005868) #28	GPR155 (ENSCABG00000005860) #29	WIPF1 (ENSCABG00000005855)	CHRNA1 (ENSCABG00000005846) #32	CHN1 (ENSCABG00000005836) #33	ENSCABG00000005833	ATF2 (ENSCABG00000005829) #34	ATP5MC3 (ENSCABG00000005827) #35	LNPK (ENSCABG00000005471)	EVX2 (ENSCABG00000005465)
Goode s thornscrub tortoise	MODERN SPECIES	2	METTL8 (ENSGEVG00005013080)	DCAF17 (ENSGEVG00005013027) #7	ENSGEVG00005013009 #9	CYBRD1 (ENSGEVG00005012910) #8	DYNC1I2 (ENSGEVG00005012858) #10	SLC25A12 (ENSGEVG00005012813) #11	HAT1 (ENSGEVG00005012776) #14	METAP1D (ENSGEVG00005012742) #15	DLX1 (ENSGEVG00005012699) #16	DLX2 (ENSGEVG00005012644) #18	ITGA6 (ENSGEVG00005011724) #19	PDK1 (ENSGEVG00005011514) #20	ENSGEVG00005011437	ENSGEVG00005011398	RAPGEF4 (ENSGEVG00005011163) #21	MAP3K20 (ENSGEVG00005011059) #22	CDCA7 (ENSGEVG00005010835) #23	ENSGEVG00005010772	SP3 (ENSGEVG00005010730) #24	OLA1 (ENSGEVG00005010691) #25	SP9 (ENSGEVG00005010627) #26	CIR1 (ENSGEVG00005010578) #27	SCRN3 (ENSGEVG00005010545) #28	GPR155 (ENSGEVG00005010493) #29	WIPF1 (ENSGEVG00005010455)	CHRNA1 (ENSGEVG00005010229) #32	ENSGEVG00005010137 #33	ENSGEVG00005010115	ENSGEVG00005010081 #33	ATF2 (ENSGEVG00005010051) #34	ENSGEVG00005009994 #35
Emydidae	ANCESTRAL SPECIES	4	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT01090000260432 #9	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Three-toed box turtle	MODERN SPECIES	25	METTL8 (ENSTMTG00000014983)	DCAF17 (ENSTMTG00000015018) #7	CYBRD1 (ENSTMTG00000015057) #8	ENSTMTG00000015063 #9	DYNC1I2 (ENSTMTG00000015108) #10	SLC25A12 (ENSTMTG00000015351) #11	ENSTMTG00000015379	HAT1 (ENSTMTG00000015392) #14	METAP1D (ENSTMTG00000015421) #15	DLX1 (ENSTMTG00000015432) #16	DLX2 (ENSTMTG00000015446) #18	ITGA6 (ENSTMTG00000015475) #19	PDK1 (ENSTMTG00000015557) #20	ENSTMTG00000015580	RAPGEF4 (ENSTMTG00000015604) #21	MAP3K20 (ENSTMTG00000015679) #22	CDCA7 (ENSTMTG00000015773) #23	SP3 (ENSTMTG00000015802) #24	OLA1 (ENSTMTG00000015817) #25	SP9 (ENSTMTG00000015838) #26	CIR1 (ENSTMTG00000015849) #27	SCRN3 (ENSTMTG00000015872) #28	GPR155 (ENSTMTG00000015892) #29	WIPF1 (ENSTMTG00000015938)	CHRNA1 (ENSTMTG00000016015) #32	CHN1 (ENSTMTG00000016233) #33	ATF2 (ENSTMTG00000016268) #34	ATP5MC3 (ENSTMTG00000016312) #35	LNPK (ENSTMTG00000016336)	EVX2 (ENSTMTG00000016382)	HOXD13 (ENSTMTG00000016398)
painted turtle	MODERN SPECIES	2363	TLK1 (ENSCPBG00000005723)	METTL8 (ENSCPBG00000005693)	DCAF17 (ENSCPBG00000005676) #7	ENSCPBG00000005662 #9	CYBRD1 (ENSCPBG00000005654) #8	DYNC1I2 (ENSCPBG00000005605) #10	SLC25A12 (ENSCPBG00000004473) #11	HAT1 (ENSCPBG00000004345) #14	METAP1D (ENSCPBG00000004328) #15	DLX1 (ENSCPBG00000004319) #16	DLX2 (ENSCPBG00000004314) #18	ITGA6 (ENSCPBG00000004218) #19	PDK1 (ENSCPBG00000004159) #20	ENSCPBG00000004114	RAPGEF4 (ENSCPBG00000004046) #21	MAP3K20 (ENSCPBG00000004016) #22	ENSCPBG00000003990	CDCA7 (ENSCPBG00000003973) #23	SP3 (ENSCPBG00000003941) #24	OLA1 (ENSCPBG00000003917) #25	SP9 (ENSCPBG00000003905) #26	CIR1 (ENSCPBG00000003892) #27	SCRN3 (ENSCPBG00000003876) #28	GPR155 (ENSCPBG00000003847) #29	WIPF1 (ENSCPBG00000003821)	CHRNA1 (ENSCPBG00000003798) #32	ENSCPBG00000003769 #33	ATF2 (ENSCPBG00000003739) #34	ATP5MC3 (ENSCPBG00000003721) #35	ENSCPBG00000003699	LNPK (ENSCPBG00000003649)
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
tuatara	MODERN SPECIES	1141															RAPGEF4 (ENSSPUG00000001476) #21	MAP3K20 (ENSSPUG00000002092) #22	ENSSPUG00000002098	ENSSPUG00000002104	ENSSPUG00000002114 #23	ENSSPUG00000002171	SP3 (ENSSPUG00000002382) #24	OLA1 (ENSSPUG00000002409) #25	SP9 (ENSSPUG00000002442) #26	CIR1 (ENSSPUG00000002452) #27	SCRN3 (ENSSPUG00000002468) #28	GPR155 (ENSSPUG00000002480) #29	WIPF1 (ENSSPUG00000002581)	CHRNA1 (ENSSPUG00000002611) #32	CHN1 (ENSSPUG00000002634) #33	ATF2 (ENSSPUG00000002668) #34	ENSSPUG00000002686 #35
Episquamata	ANCESTRAL SPECIES		ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Laterata	ANCESTRAL SPECIES	30	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000175090	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859
Argentine black and white tegu	MODERN SPECIES	18															RAPGEF4 (ENSSMRG00000018086) #21	MAP3K20 (ENSSMRG00000018095) #22	CDCA7 (ENSSMRG00000018098) #23	ENSSMRG00000018104	SP3 (ENSSMRG00000018190) #24	OLA1 (ENSSMRG00000018191) #25	ENSSMRG00000018193	SP9 (ENSSMRG00000018194) #26	CIR1 (ENSSMRG00000018195) #27	SCRN3 (ENSSMRG00000018196) #28	GPR155 (ENSSMRG00000018197) #29	WIPF1 (ENSSMRG00000018198)	CHRNA1 (ENSSMRG00000018200) #32	CHN1 (ENSSMRG00000018201) #33	ATF2 (ENSSMRG00000018203) #34	ENSSMRG00000018204 #35	LNPK (ENSSMRG00000018206)
Common wall lizard	MODERN SPECIES		TLK1 (ENSPMRG00000001271)	METTL8 (ENSPMRG00000001250)	DCAF17 (ENSPMRG00000001229) #7	CYBRD1 (ENSPMRG00000001217) #8	DYNC1I2 (ENSPMRG00000001198) #10	SLC25A12 (ENSPMRG00000001179) #11	HAT1 (ENSPMRG00000001154) #14	METAP1D (ENSPMRG00000001114) #15	DLX1 (ENSPMRG00000001095) #16	DLX2 (ENSPMRG00000001086) #18	ENSPMRG00000001072	ITGA6 (ENSPMRG00000000992) #19	PDK1 (ENSPMRG00000000949) #20	ENSPMRG00000000916	RAPGEF4 (ENSPMRG00000000688) #21	MAP3K20 (ENSPMRG00000000520) #22	ENSPMRG00000000437	CDCA7 (ENSPMRG00000000416) #23	ENSPMRG00000000381	ENSPMRG00000000349	ENSPMRG00000000324	SP3 (ENSPMRG00000000292) #24	OLA1 (ENSPMRG00000000249) #25	SP9 (ENSPMRG00000000219) #26	CIR1 (ENSPMRG00000000186) #27	SCRN3 (ENSPMRG00000000165) #28	GPR155 (ENSPMRG00000000135) #29	WIPF1 (ENSPMRG00000000116)	CHRNA1 (ENSPMRG00000000100) #32	CHN1 (ENSPMRG00000004341) #33	ATF2 (ENSPMRG00000004321) #34
Toxicofera	ANCESTRAL SPECIES	10	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.c #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Lizard	MODERN SPECIES	930															RAPGEF4 (ENSACAG00000006250) #21	MAP3K20 (ENSACAG00000006292) #22	CDCA7 (ENSACAG00000006323) #23	ENSACAG00000006349	ENSACAG00000039593	ENSACAG00000037087	ENSACAG00000012210	SP3 (ENSACAG00000017061) #24	ENSACAG00000036865	OLA1 (ENSACAG00000017018) #25	ENSACAG00000013943	ENSACAG00000034735
Elapidae	ANCESTRAL SPECIES		ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.c #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000161308
Indian cobra	MODERN SPECIES		GORASP2 (ENSNNAG00000000356)	TLK1 (ENSNNAG00000000305)	DCAF17 (ENSNNAG00000000257) #7	CYBRD1 (ENSNNAG00000000231) #8	DYNC1I2 (ENSNNAG00000000221) #10	SLC25A12 (ENSNNAG00000000213) #11	HAT1 (ENSNNAG00000000204) #14	METAP1D (ENSNNAG00000000198) #15	DLX1 (ENSNNAG00000000195) #16	DLX2 (ENSNNAG00000000192) #18	ENSNNAG00000000187	ITGA6 (ENSNNAG00000000157) #19	PDK1 (ENSNNAG00000000150) #20	ENSNNAG00000000147	RAPGEF4 (ENSNNAG00000000144) #21	MAP3K20 (ENSNNAG00000000140) #22	CDCA7 (ENSNNAG00000000139) #23	SP3 (ENSNNAG00000000138) #24	OLA1 (ENSNNAG00000000137) #25	SP9 (ENSNNAG00000000135) #26	CIR1 (ENSNNAG00000000133) #27	SCRN3 (ENSNNAG00000000130) #28	GPR155 (ENSNNAG00000000128) #29	ENSNNAG00000000127 #30	CHRNA1 (ENSNNAG00000000125) #32	ENSNNAG00000000121 #33	ENSNNAG00000000119	ENSNNAG00000000117	ENSNNAG00000000114 #33	ATF2 (ENSNNAG00000000112) #34	ATP5MC3 (ENSNNAG00000000110) #35
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.c #33	ENSGT01000000218334	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.lc #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.a.a.c #33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a.lc #35	ENSGT00390000001859	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000161308
Mainland tiger snake	MODERN SPECIES	93	SP5 (ENSNSUG00000014418)	GAD1 (ENSNSUG00000014417)	GORASP2 (ENSNSUG00000014415)	TLK1 (ENSNSUG00000014390)	DCAF17 (ENSNSUG00000014388) #7	DYNC1I2 (ENSNSUG00000014387) #10	SLC25A12 (ENSNSUG00000011883) #11	HAT1 (ENSNSUG00000011801) #14	METAP1D (ENSNSUG00000011800) #15	DLX1 (ENSNSUG00000011798) #16	DLX2 (ENSNSUG00000011797) #18	ITGA6 (ENSNSUG00000011670) #19	PDK1 (ENSNSUG00000011584) #20	ENSNSUG00000011582	RAPGEF4 (ENSNSUG00000011574) #21	MAP3K20 (ENSNSUG00000011551) #22	CDCA7 (ENSNSUG00000011545) #23	SP3 (ENSNSUG00000011503) #24	OLA1 (ENSNSUG00000011501) #25	SP9 (ENSNSUG00000011499) #26	CIR1 (ENSNSUG00000011459) #27	ENSNSUG00000011458 #28	GPR155 (ENSNSUG00000011455) #29	ENSNSUG00000011452 #30	CHRNA1 (ENSNSUG00000011450) #32	CHN1 (ENSNSUG00000011448) #33	ATF2 (ENSNSUG00000011447) #34	ENSNSUG00000011445 #35	LNPK (ENSNSUG00000011230)	EVX2 (ENSNSUG00000011227)	HOXD13 (ENSNSUG00000011225)
Eastern brown snake	MODERN SPECIES	7	ENSPTXG00000000726	GORASP2 (ENSPTXG00000000724)	TLK1 (ENSPTXG00000000716)	DCAF17 (ENSPTXG00000000705) #7	CYBRD1 (ENSPTXG00000000698) #8	DYNC1I2 (ENSPTXG00000000687) #10	SLC25A12 (ENSPTXG00000000677) #11	HAT1 (ENSPTXG00000000671) #14	METAP1D (ENSPTXG00000000666) #15	DLX1 (ENSPTXG00000000662) #16	DLX2 (ENSPTXG00000000658) #18	ITGA6 (ENSPTXG00000000605) #19	PDK1 (ENSPTXG00000000578) #20	ENSPTXG00000000542	RAPGEF4 (ENSPTXG00000000433) #21	MAP3K20 (ENSPTXG00000000382) #22	CDCA7 (ENSPTXG00000000367) #23	SP3 (ENSPTXG00000000354) #24	OLA1 (ENSPTXG00000000329) #25	SP9 (ENSPTXG00000000321) #26	CIR1 (ENSPTXG00000000304) #27	SCRN3 (ENSPTXG00000000283) #28	GPR155 (ENSPTXG00000000262) #29	ENSPTXG00000000245 #30	CHRNA1 (ENSPTXG00000000220) #32	CHN1 (ENSPTXG00000000161) #33	ATF2 (ENSPTXG00000000105) #34	ENSPTXG00000000082 #35	LNPK (ENSPTXG00000000058)	EVX2 (ENSPTXG00000000029)	HOXD13 (ENSPTXG00000000024)
Actinopterygii	ANCESTRAL SPECIES		ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353 #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000154298.a.a #35	ENSGT00390000001859	ENSGT00940000161025
Neopterygii	ANCESTRAL SPECIES	1	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963 #11	ENSGT00900000142763	ENSGT00390000007069 #14	ENSGT00940000157735 #15	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127	ENSGT00940000156075.a.a #21	ENSGT00940000161352 #22	ENSGT00940000155436 #23	ENSGT00940000154076.B.b	ENSGT00940000155099 #24	ENSGT00390000000673.b #25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859	ENSGT00940000161025
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Channel catfish	MODERN SPECIES	11	arv1 (ENSIPUG00000011137)	ttc13 (ENSIPUG00000011124)	ENSIPUG00000011112	c2h1orf198 (ENSIPUG00000011103)	rps6kc1 (ENSIPUG00000011081)	ENSIPUG00000011063	SMYD2 (ENSIPUG00000011020)	ptpn14 (ENSIPUG00000010953)	kcnk2b (ENSIPUG00000010928)	ENSIPUG00000010889	ABHD1 (ENSIPUG00000010873)	ENSIPUG00000010837	CTGF (ENSIPUG00000010786)	moxd1 (ENSIPUG00000010767)	epha7 (ENSIPUG00000010717)	ENSIPUG00000010441 #22	BACH2 (ENSIPUG00000010404)	gja10 (ENSIPUG00000010380)	Casp8ap2 (ENSIPUG00000010358)	MDN1 (ENSIPUG00000010169)	ginm1 (ENSIPUG00000010123)	katna1 (ENSIPUG00000010083)	ginm1 (ENSIPUG00000010024)	ENSIPUG00000010005	ENSIPUG00000009991	ENSIPUG00000009986	gabrr1 (ENSIPUG00000009965)	GABRR2 (ENSIPUG00000009942)	ube2j1 (ENSIPUG00000009897)	ankrd6b (ENSIPUG00000009833)	lyrm2 (ENSIPUG00000009819)
Euteleosteomorpha	ANCESTRAL SPECIES	155																ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000155554	ENSGT00940000161060	ENSGT00940000153577.B
Acanthomorphata	ANCESTRAL SPECIES	199																ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000157454	ENSGT00940000155554	ENSGT00940000161060
Euacanthomorphacea	ANCESTRAL SPECIES	65	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000154245.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000169464	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000157454	ENSGT00940000155554
Percomorphaceae	ANCESTRAL SPECIES	58	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000154245.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000169464	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000157454	ENSGT00940000155554
Tiger tail seahorse	MODERN SPECIES	419									ENSHCOG00000019122	ccn6 (ENSHCOG00000019108)	fam241a (ENSHCOG00000019093)	jkamp (ENSHCOG00000019089)	GPR135 (ENSHCOG00000019069)	ENSHCOG00000019058	ENSHCOG00000019042	ENSHCOG00000018990 #22	ENSHCOG00000018980	ENSHCOG00000018970
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Oryzias_b	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Javanese ricefish	MODERN SPECIES	14	STX11 (ENSOJAG00000021217)	ENSOJAG00000021210	rmnd1 (ENSOJAG00000021201)	plekhh1 (ENSOJAG00000020820)	ENSOJAG00000020793	ENSOJAG00000020783	slc25a21 (ENSOJAG00000020698)	pax9 (ENSOJAG00000020682)	NKX2-8 (ENSOJAG00000020680)	nkx2.1 (ENSOJAG00000020674)	mbip (ENSOJAG00000020665)	ENSOJAG00000020655	RPS6KA5 (ENSOJAG00000020304)	hadhab (ENSOJAG00000019572)	ENSOJAG00000019526	ENSOJAG00000019302 #22	jkamp (ENSOJAG00000019163)	ankrd9 (ENSOJAG00000019059)	rcor1 (ENSOJAG00000018953)	ENSOJAG00000018946	traf3 (ENSOJAG00000018863)	C5orf63 (ENSOJAG00000018843)	mipol1 (ENSOJAG00000018800)	ENSOJAG00000018785	ENSOJAG00000018739	sec23a (ENSOJAG00000018656)	srp54 (ENSOJAG00000018632)	ENSOJAG00000018628	lrrc57 (ENSOJAG00000018619)	tyro3 (ENSOJAG00000018371)	ENSOJAG00000018338
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Chinese medaka	MODERN SPECIES	999												nkx2.1 (ENSOSIG00000007057)	mbip (ENSOSIG00000007054)	ENSOSIG00000007034	hadhab (ENSOSIG00000005956)	ENSOSIG00000005945 #22	ENSOSIG00000005191
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000161352.e #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.b	ENSGT01100000263483.E.b.a.b
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Cottioidei	ANCESTRAL SPECIES	45	ENSGT00390000016577.a	ENSGT00940000156087.b	ENSGT00940000154785.A	ENSGT00950000183136.a.a	ENSGT00390000002237	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000169464	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000155554
Stickleback	MODERN SPECIES	103			PALS1 (ENSGACG00000001891)	ccdc88c (ENSGACG00000001898)	GPR68 (ENSGACG00000001915)	DGLUCY (ENSGACG00000001939)	ENSGACG00000001946	ENSGACG00000001954	rrh (ENSGACG00000001957)	enpep (ENSGACG00000001963)	lrit3b (ENSGACG00000001983)	fam241a (ENSGACG00000001986)	jkamp (ENSGACG00000001988)	GPR135 (ENSGACG00000001995)	ENSGACG00000001996	ENSGACG00000002001 #22	ENSGACG00000002017
Eupecaria_C	ANCESTRAL SPECIES	40	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000169464	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000169464	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000155554	ENSGT00940000161060
European seabass	MODERN SPECIES	2	dapp1 (ENSDLAG00005026970)	atp10d (ENSDLAG00005017172)	commd8 (ENSDLAG00005017077)	ENSDLAG00005016996	ENSDLAG00005034857	ENSDLAG00005016961	ENSDLAG00005016931	ENSDLAG00005016924	rrh (ENSDLAG00005016912)	ENSDLAG00005016662	lrit3b (ENSDLAG00005016643)	ENSDLAG00005016636	ENSDLAG00005027400	ENSDLAG00005016582	ENSDLAG00005015623	ENSDLAG00005015569 #22	ENSDLAG00005015525	gja10a (ENSDLAG00005015516)	ENSDLAG00005015497	ENSDLAG00005014114	ENSDLAG00005003984	rragd (ENSDLAG00005034769)	gabrr2a (ENSDLAG00005033998)	syne3 (ENSDLAG00005015426)	CLMN (ENSDLAG00005015362)	DICER1 (ENSDLAG00005015215)	GSC (ENSDLAG00005031602)	ENSDLAG00005026676	ENSDLAG00005031505	ENSDLAG00005032541	ENSDLAG00005030139
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097	ENSGT00950000182998.A	ENSGT00940000156452.b	ENSGT00940000169464	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
Anabantoidei	ANCESTRAL SPECIES																	ENSGT00940000161352.e #22
Climbing perch	MODERN SPECIES	3	ENSATEG00000028632	lamtor3 (ENSATEG00000015106)	dapp1 (ENSATEG00000015093)	atp10d (ENSATEG00000014982)	commd8 (ENSATEG00000014944)	ENSATEG00000014896	ENSATEG00000014858	ENSATEG00000014822	ENSATEG00000027950	ENSATEG00000014779	ENSATEG00000014454	ENSATEG00000014405	ENSATEG00000014381	ENSATEG00000014367	ENSATEG00000014304	ENSATEG00000014277 #22	ENSATEG00000028619	ENSATEG00000014248	gja10a (ENSATEG00000014235)	rragd (ENSATEG00000027221)	gabrr2a (ENSATEG00000014189)	syne3 (ENSATEG00000014170)	CLMN (ENSATEG00000014147)	dicer1 (ENSATEG00000014048)	gsc (ENSATEG00000014030)	ENSATEG00000014023	ENSATEG00000014013	galcb (ENSATEG00000013940)	ak7b (ENSATEG00000013849)	ENSATEG00000013816	vrk1 (ENSATEG00000013757)
Zig-zag eel	MODERN SPECIES	14	dapp1 (ENSMAMG00000016381)	atp10d (ENSMAMG00000016401)	commd8 (ENSMAMG00000025871)	ENSMAMG00000016457	ENSMAMG00000016472	ENSMAMG00000016487	ENSMAMG00000016509	rrh (ENSMAMG00000016514)	ENSMAMG00000016540	lrit3b (ENSMAMG00000016590)	ENSMAMG00000027692	ENSMAMG00000016613	ENSMAMG00000016620	ENSMAMG00000016628	ENSMAMG00000016640	ENSMAMG00000028303 #22	ENSMAMG00000016710	gja10a (ENSMAMG00000016721)	gabrr2a (ENSMAMG00000016732)	syne3 (ENSMAMG00000016750)	ENSMAMG00000016773	ENSMAMG00000016779	ENSMAMG00000016788	dicer1 (ENSMAMG00000016806)	ENSMAMG00000028445	gsc (ENSMAMG00000016890)	ENSMAMG00000027497	ENSMAMG00000006681	galcb (ENSMAMG00000016911)	ak7b (ENSMAMG00000016942)	vrk1 (ENSMAMG00000016970)
Protacanthopterygii	ANCESTRAL SPECIES	35	ENSGT00390000004660.C.a.a.c	ENSGT00950000182852.A.a.a.b	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137.i.a	ENSGT00940000155671.y.a	ENSGT00940000157666	ENSGT00940000164908	ENSGT01030000234667.b.f.b	ENSGT00940000155695.i.b.a.a	ENSGT00940000155695.i.b.a.b	ENSGT00880000138028.b.b	ENSGT00550000074866	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000161352.e #22	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000013762.b.b
Northern pike	MODERN SPECIES	14	tmem30aa (ENSELUG00000002512)	FILIP1 (ENSELUG00000002480)	adi1 (ENSELUG00000002472)	trappc12 (ENSELUG00000002459)	eipr1 (ENSELUG00000002442)	ENSELUG00000002432	MYT1L (ENSELUG00000002411)	PXDN (ENSELUG00000002379)	zgc:113142 (ENSELUG00000002362)	CCR6 (ENSELUG00000002358)	ENSELUG00000002349	rtn4ip1 (ENSELUG00000002339)	qrsl1 (ENSELUG00000002326)	iars2 (ENSELUG00000002308)	rab3gap2 (ENSELUG00000002276)	ENSELUG00000002252 #22	ENSELUG00000002246	gja10a (ENSELUG00000002243)	itpka (ENSELUG00000002239)	ltk (ENSELUG00000002224)	RPAP1 (ENSELUG00000002206)	ENSELUG00000002195	ENSELUG00000001438	ENSELUG00000031603	ENSELUG00000002187	ENSELUG00000002182	ENSELUG00000002177	NRBP1 (ENSELUG00000002170)	KCTD3 (ENSELUG00000002147)	USH2A (ENSELUG00000002127)	esrrga (ENSELUG00000001603)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	22	ENSGT00390000004660.C.a.a.c.e	ENSGT00950000182852.A.a.a.b.d	ENSGT00390000008195	ENSGT00390000002448.j	ENSGT00730000111137.i.a	ENSGT00940000155671.y.a.a	ENSGT00940000157666.e	ENSGT01030000234667.b.f.b.a	ENSGT00970000197179	ENSGT00940000155695.i.b.a.b	ENSGT00990000210716	ENSGT00880000138028.b.b.s	ENSGT00550000074866.q.a	ENSGT00550000074910.f	ENSGT00390000005794.f	ENSGT00940000161352.e.a.a #22	ENSGT00940000158228.b.f	ENSGT01090000260070.D.b.c	ENSGT00940000166410.c	ENSGT00940000164602.o	ENSGT00390000007594	ENSGT00390000013762.b.b.g	ENSGT00600000084860.D.a	ENSGT01100000263520.a.b.a.a.b	ENSGT00940000156491.b.b	ENSGT00390000004700.b.f	ENSGT00940000155605.a.b.a.a	ENSGT00940000153881.a.e	ENSGT00940000170735	ENSGT00940000153433.B.a.b.g.b	ENSGT00390000011270
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000154550.a.vb.a	ENSGT00390000004660.C.a.a.c.e	ENSGT00950000182852.A.a.a.b.d	ENSGT00390000008195	ENSGT00390000002448.j	ENSGT00730000111137.i.a	ENSGT00940000155671.y.a.a	ENSGT00940000157666.e	ENSGT01030000234667.b.f.b.a	ENSGT00940000155695.i.b.a.b	ENSGT00990000210716	ENSGT00880000138028.b.b.s	ENSGT00550000074866.q.a	ENSGT00550000074910.f	ENSGT00390000005794.f	ENSGT00940000161352.e.a.a #22	ENSGT00940000158228.b.f	ENSGT01090000260070.D.b.c	ENSGT00940000166410.c	ENSGT00940000164602.o	ENSGT00390000007594	ENSGT00390000013762.b.b.g	ENSGT00600000084860.D.a	ENSGT01100000263520.a.b.a.a.b	ENSGT00940000156491.b.b	ENSGT00390000004700.b.f	ENSGT00940000155605.a.b.a.a	ENSGT00940000153881.a.e	ENSGT00940000153433.B.a.b.g.b	ENSGT00390000011270	ENSGT00390000008041.A.c
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000154550.a.vb.a	ENSGT00390000004660.C.a.a.c.e	ENSGT00950000182852.A.a.a.b.d	ENSGT00390000008195	ENSGT00390000002448.j	ENSGT00730000111137.i.a	ENSGT00940000155671.y.a.a	ENSGT00940000157666.e	ENSGT01030000234667.b.f.b.a	ENSGT00940000155695.i.b.a.b	ENSGT00990000210716	ENSGT00880000138028.b.b.s	ENSGT00550000074866.q.a	ENSGT00550000074910.f	ENSGT00390000005794.f	ENSGT00940000161352.e.a.a #22	ENSGT00940000158228.b.f	ENSGT01090000260070.D.b.c	ENSGT01030000235133	ENSGT00940000166410.c	ENSGT00940000164602.o	ENSGT00390000007594	ENSGT00390000013762.b.b.g	ENSGT00600000084860.D.a	ENSGT01100000263520.a.b.a.a.b	ENSGT00940000156491.b.b	ENSGT00390000004700.b.f	ENSGT00940000155605.a.b.a.a	ENSGT00940000153881.a.e	ENSGT00940000153433.B.a.b.g.b	ENSGT00390000011270
Atlantic salmon	MODERN SPECIES	28	COL12A1 (ENSSSAG00000009652)	cox7a2a (ENSSSAG00000009506)	tmem30aa (ENSSSAG00000009491)	FILIP1 (ENSSSAG00000009487)	adi1 (ENSSSAG00000009479)	TTC15 (ENSSSAG00000008588)	eipr1 (ENSSSAG00000008536)	MYT1L (ENSSSAG00000007814)	pxdn (ENSSSAG00000007665)	ENSSSAG00000092027	ENSSSAG00000007575	ENSSSAG00000007567	rtn4ip1 (ENSSSAG00000007419)	qrsl1 (ENSSSAG00000007327)	rab3gap2 (ENSSSAG00000002984)	ENSSSAG00000002683 #22	ENSSSAG00000002677	ENSSSAG00000002668	ENSSSAG00000002673	itpka (ENSSSAG00000002658)	ltk (ENSSSAG00000110394)	ENSSSAG00000002357	ENSSSAG00000002211	ENSSSAG00000113839	ENSSSAG00000062950	ENSSSAG00000062930	ENSSSAG00000062929	ENSSSAG00000086547	ENSSSAG00000062750	ENSSSAG00000060769	esrrga (ENSSSAG00000115275)
River trout	MODERN SPECIES	17	cox7a2a (ENSSTUG00000007779)	tmem30aa (ENSSTUG00000007795)	FILIP1 (ENSSTUG00000007815)	adi1 (ENSSTUG00000007830)	trappc12 (ENSSTUG00000007944)	eipr1 (ENSSTUG00000009201)	MYT1L (ENSSTUG00000009282)	PXDN (ENSSTUG00000010392)	ENSSTUG00000010975	ENSSTUG00000011012	rtn4ip1 (ENSSTUG00000011236)	ENSSTUG00000011958	qrsl1 (ENSSTUG00000011975)	iars2 (ENSSTUG00000012115)	rab3gap2 (ENSSTUG00000012678)	ENSSTUG00000016588 #22	ENSSTUG00000016623	gja10a (ENSSTUG00000016641)	itpka (ENSSTUG00000016665)	ltk (ENSSTUG00000016708)	RPAP1 (ENSSTUG00000017364)	ENSSTUG00000017630	ENSSTUG00000017637	ENSSTUG00000017646	ENSSTUG00000017659	KRTCAP3 (ENSSTUG00000017716)	NRBP1 (ENSSTUG00000017785)	KCTD3 (ENSSTUG00000018651)	ENSSTUG00000018976	ENSSTUG00000018978	spata17 (ENSSTUG00000018983)
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000154923.C.w.a.j	ENSGT00940000154550.a.vb.a	ENSGT00390000004660.C.a.a.c.e	ENSGT00950000182852.A.a.a.b.d	ENSGT00390000008195	ENSGT00390000002448.j	ENSGT00730000111137.i.a	ENSGT00940000155671.y.a.a	ENSGT00940000157666.e	ENSGT01030000234667.b.f.b.a	ENSGT00940000155695.i.b.a.b	ENSGT00990000210716	ENSGT00880000138028.b.b.s	ENSGT00550000074866.q.a	ENSGT00390000005794.f	ENSGT00940000161352.e.a.a #22	ENSGT00940000158228.b.f	ENSGT01090000260070.D.b.c	ENSGT00940000166410.c	ENSGT00940000164602.o	ENSGT00390000007594	ENSGT00390000013762.b.b.g	ENSGT00600000084860.D.a	ENSGT01100000263520.a.b.a.a.b	ENSGT00940000156491.b.b	ENSGT00390000004700.b.f	ENSGT00940000155605.a.b.a.a	ENSGT00940000153881.a.e	ENSGT00940000170735	ENSGT00390000011270	ENSGT00390000008041.A.c
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000049133	adi1 (ENSOMYG00000032765)	trappc12 (ENSOMYG00000031451)	eipr1 (ENSOMYG00000031287)	ENSOMYG00000068916	MYT1L (ENSOMYG00000031187)	PXDN (ENSOMYG00000031096)	ENSOMYG00000031009	ENSOMYG00000030774	defb3 (ENSOMYG00000030660)	ENSOMYG00000075764	rtn4ip1 (ENSOMYG00000030470)	qrsl1 (ENSOMYG00000030301)	ENSOMYG00000042941	rab3gap2 (ENSOMYG00000027493)	ENSOMYG00000026503 #22	ENSOMYG00000033718	ENSOMYG00000033711	itpka (ENSOMYG00000033699)	ltk (ENSOMYG00000033648)	ENSOMYG00000033516	ENSOMYG00000033482	ENSOMYG00000033475	ENSOMYG00000033474	ENSOMYG00000033451	ENSOMYG00000014639	ENSOMYG00000033377	ENSOMYG00000033271	ENSOMYG00000067341	esrrga (ENSOMYG00000071373)	ENSOMYG00000052199
Huchen	MODERN SPECIES	109	myof (ENSHHUG00000024516)	nudt13 (ENSHHUG00000024477)	dnajc9 (ENSHHUG00000024474)	ENSHHUG00000024470	ENSHHUG00000024467	GRID1 (ENSHHUG00000024390)	PXDN (ENSHHUG00000024311)	CCR6 (ENSHHUG00000024303)	ENSHHUG00000024300	ENSHHUG00000024299	ENSHHUG00000024295	rtn4ip1 (ENSHHUG00000024276)	qrsl1 (ENSHHUG00000024269)	iars2 (ENSHHUG00000024251)	rab3gap2 (ENSHHUG00000024119)	ENSHHUG00000024080 #22	ENSHHUG00000024073	gja10a (ENSHHUG00000024072)	itpka (ENSHHUG00000024063)	ltk (ENSHHUG00000024035)	RPAP1 (ENSHHUG00000024014)	ENSHHUG00000024010	ENSHHUG00000024009	ENSHHUG00000024007	ENSHHUG00000023957	KRTCAP3 (ENSHHUG00000023950)	NRBP1 (ENSHHUG00000023890)	ENSHHUG00000023868	ENSHHUG00000023861
Salmoninae	ANCESTRAL SPECIES	677								ENSGT00940000157666.f	ENSGT00940000164908	ENSGT01030000234667.b.f.b.b	ENSGT00940000155695.i.b.a.a	ENSGT00880000138028.b.b.t	ENSGT00550000074866.q.b	ENSGT00550000074910.e	ENSGT00390000005794.e	ENSGT00940000161352.e.a.b #22	ENSGT00940000158228.b.e	ENSGT01090000260070.D.b.d	ENSGT00940000166410.d	ENSGT00940000164602.p
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000154923.C.w.a.i	ENSGT00940000154550.a.vb.b	ENSGT00390000004660.C.a.a.c.f	ENSGT00950000182852.A.a.a.b.c	ENSGT00390000002448.i	ENSGT00730000111137.i.b	ENSGT00940000155671.y.a.b	ENSGT00940000157666.f	ENSGT00940000164908	ENSGT01030000234667.b.f.b.b	ENSGT00940000155695.i.b.a.a	ENSGT00880000138028.b.b.t	ENSGT00550000074866.q.b	ENSGT00550000074910.e	ENSGT00390000005794.e	ENSGT00940000161352.e.a.b #22	ENSGT00940000158228.b.e	ENSGT01090000260070.D.b.d	ENSGT00940000166410.d	ENSGT00940000164602.p	ENSGT00390000013762.b.b.h	ENSGT00390000013207	ENSGT00600000084860.D.b	ENSGT00940000156207.b.c.a.b.a.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00940000153433.B.a.b.h	ENSGT00390000008041.A.d
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000153592.A.b.b	ENSGT00940000155926.f	ENSGT00940000154923.C.w.a.i	ENSGT00940000154550.a.vb.b	ENSGT00390000004660.C.a.a.c.f	ENSGT00950000182852.A.a.a.b.c	ENSGT00390000002448.i	ENSGT00730000111137.i.b	ENSGT00940000155671.y.a.b	ENSGT00940000157666.f	ENSGT01030000234667.b.f.b.b	ENSGT00880000138028.b.b.t	ENSGT00550000074866.q.b	ENSGT00550000074910.e	ENSGT00390000005794.e	ENSGT00940000161352.e.a.b #22	ENSGT00940000158228.b.e	ENSGT01090000260070.D.b.d	ENSGT00940000166410.d	ENSGT00940000164602.p	ENSGT00390000013762.b.b.h	ENSGT00390000013207	ENSGT00600000084860.D.b	ENSGT00940000156207.b.c.a.b.a.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00390000008041.A.d	ENSGT00940000157219.f.d
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000155926.f	ENSGT00940000154923.C.w.a.i	ENSGT00940000154550.a.vb.b.a	ENSGT00390000004660.C.a.a.c.f	ENSGT00950000182852.A.a.a.b.c	ENSGT00390000002448.i	ENSGT00730000111137.i.b	ENSGT00940000155671.y.a.b	ENSGT00940000157666.f	ENSGT01030000234667.b.f.b.b	ENSGT01060000252874	ENSGT00880000138028.b.b.t	ENSGT00550000074866.q.b	ENSGT00550000074910.e	ENSGT00390000005794.e	ENSGT00940000161352.e.a.b #22	ENSGT00940000158228.b.e	ENSGT01090000260070.D.b.d	ENSGT00940000166410.d	ENSGT00940000164602.p	ENSGT00390000013762.b.b.h	ENSGT00390000013207	ENSGT00600000084860.D.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00390000008041.A.d	ENSGT00940000157219.f.d	ENSGT00390000018900.q
Chinook salmon	MODERN SPECIES	2	ENSOTSG00005001746	ENSOTSG00005001750	TIAM2 (ENSOTSG00005001753)	KBTBD11 (ENSOTSG00005001758)	LGALS8 (ENSOTSG00005001764)	ENSOTSG00005001771	ZDHHC14 (ENSOTSG00005001776)	ENSOTSG00005001791	MYT1L (ENSOTSG00005001804)	PXDN (ENSOTSG00005001830)	ENSOTSG00005002011	rtn4ip1 (ENSOTSG00005002014)	qrsl1 (ENSOTSG00005002017)	iars2 (ENSOTSG00005002046)	rab3gap2 (ENSOTSG00005002790)	ENSOTSG00005007574 #22	ENSOTSG00005007575	ENSOTSG00005007576	ENSOTSG00005007577	FILIP1 (ENSOTSG00005007580)	tmem30aa (ENSOTSG00005007583)	cox7a2a (ENSOTSG00005007585)	COL12A1 (ENSOTSG00005007639)	CD109 (ENSOTSG00005013530)	ENSOTSG00005013531	zgc:193593 (ENSOTSG00005013532)	ENSOTSG00005013533	DLGAP2 (ENSOTSG00005013535)	cln8 (ENSOTSG00005013537)	ENSOTSG00005013539	ENSOTSG00005013540
Coho salmon	MODERN SPECIES	27	COL12A1 (ENSOKIG00005003414)	cox7a2a (ENSOKIG00005005358)	tmem30aa (ENSOKIG00005005370)	FILIP1 (ENSOKIG00005005378)	ENSOKIG00005005382	eipr1 (ENSOKIG00005005397)	MYT1L (ENSOKIG00005005435)	PXDN (ENSOKIG00005005933)	ENSOKIG00005006221	zgc:113142 (ENSOKIG00005006232)	ENSOKIG00005006245	ENSOKIG00005006252	qrsl1 (ENSOKIG00005006271)	iars2 (ENSOKIG00005006352)	rab3gap2 (ENSOKIG00005007098)	ENSOKIG00005011489 #22	ENSOKIG00005011660	ENSOKIG00005011674	itpka (ENSOKIG00005011686)	ENSOKIG00005011781	ENSOKIG00005012198	ENSOKIG00005012203	ENSOKIG00005012230	ENSOKIG00005012245	ENSOKIG00005012257	ENSOKIG00005012288	ENSOKIG00005012398	ENSOKIG00005012401	NRBP1 (ENSOKIG00005012441)	ENSOKIG00005012950	ENSOKIG00005012990
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000154923.C.w.a.i	ENSGT00940000154550.a.vb.b	ENSGT00390000004660.C.a.a.c.f	ENSGT00950000182852.A.a.a.b.c	ENSGT00390000002448.i	ENSGT00730000111137.i.b	ENSGT00940000155671.y.a.b	ENSGT00940000157666.f	ENSGT00940000164908	ENSGT01030000234667.b.f.b.b	ENSGT00940000155695.i.b.a.a	ENSGT00880000138028.b.b.t	ENSGT00550000074866.q.b	ENSGT00550000074910.e	ENSGT00390000005794.e	ENSGT00940000161352.e.a.b #22	ENSGT00940000158228.b.e	ENSGT01090000260070.D.b.d	ENSGT00940000166410.d	ENSGT00940000164602.p	ENSGT00990000210991	ENSGT00390000013762.b.b.h	ENSGT00390000013207	ENSGT00600000084860.D.b	ENSGT00940000156207.b.c.a.b.a.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00940000153433.B.a.b.h
Atlantic salmon	MODERN SPECIES		ENSSSAG00000071421	CD109 (ENSSSAG00000104014)	COL12A1 (ENSSSAG00000071348)	cox7a2a (ENSSSAG00000071321)	CC50A (ENSSSAG00000071310)	FILIP1 (ENSSSAG00000071306)	ENSSSAG00000116875	eipr1 (ENSSSAG00000071296)	PXDN (ENSSSAG00000070283)	zgc:113142 (ENSSSAG00000117279)	ENSSSAG00000122190	ENSSSAG00000070266	rtn4ip1 (ENSSSAG00000070251)	iars2 (ENSSSAG00000068510)	rab3gap2 (ENSSSAG00000062942)	ENSSSAG00000061820 #22	ENSSSAG00000061763	ENSSSAG00000061751	ENSSSAG00000061686	ENSSSAG00000056489	ENSSSAG00000056432	ENSSSAG00000056422	ENSSSAG00000056408	adf1 (ENSSSAG00000056403)	ENSSSAG00000056399	ENSSSAG00000056357	ENSSSAG00000056166	KCTD3 (ENSSSAG00000055918)	ENSSSAG00000055804	ENSSSAG00000112355	esrrga (ENSSSAG00000118635)
River trout	MODERN SPECIES	26	COL12A1 (ENSSTUG00000039198)	cox7a2a (ENSSTUG00000042697)	tmem30aa (ENSSTUG00000042764)	FILIP1 (ENSSTUG00000042799)	eipr1 (ENSSTUG00000042823)	MYT1L (ENSSTUG00000043029)	PXDN (ENSSTUG00000043533)	zgc:113142 (ENSSTUG00000043670)	ENSSTUG00000043673	ENSSTUG00000043676	rtn4ip1 (ENSSTUG00000043686)	ENSSTUG00000043732	qrsl1 (ENSSTUG00000043735)	iars2 (ENSSTUG00000043752)	rab3gap2 (ENSSTUG00000043952)	ENSSTUG00000047398 #22	ENSSTUG00000047484	gja10a (ENSSTUG00000047485)	itpka (ENSSTUG00000047489)	ltk (ENSSTUG00000047506)	ENSSTUG00000047626	ENSSTUG00000047633	ENSSTUG00000047644	ENSSTUG00000047652	ENSSTUG00000047656	ENSSTUG00000047659	ENSSTUG00000047665	NRBP1 (ENSSTUG00000047686)	KCTD3 (ENSSTUG00000047941)	ENSSTUG00000048128	esrrga (ENSSTUG00000048249)
Huchen	MODERN SPECIES	845									zgc:113142 (ENSHHUG00000048241)	CCR6 (ENSHHUG00000048243)	ENSHHUG00000048244	rtn4ip1 (ENSHHUG00000048247)	qrsl1 (ENSHHUG00000048249)	iars2 (ENSHHUG00000048255)	rab3gap2 (ENSHHUG00000048342)	ENSHHUG00000048545 #22	ENSHHUG00000048601	gja10a (ENSHHUG00000048607)	itpka (ENSHHUG00000048609)	ltk (ENSHHUG00000048614)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000161352.e.b #22
Huchen	MODERN SPECIES	382			ENSHHUG00000039307	camlg (ENSHHUG00000039312)	gps2 (ENSHHUG00000039319)	ENSHHUG00000039342	ctdnep1a (ENSHHUG00000039477)	plscr3a (ENSHHUG00000039509)	sox19a (ENSHHUG00000039521)	eif4a1b (ENSHHUG00000039528)	ENSHHUG00000039564	foxo1b (ENSHHUG00000039573)	ENSHHUG00000039574	EPHA7 (ENSHHUG00000039589)	ENSHHUG00000039591	ENSHHUG00000039595 #22
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	6	ENSGT00950000183197.b.b #8	ENSGT00940000155442 #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00900000142763	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099 #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153 #29	ENSGT00910000144296	ENSGT00940000156851 #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.f	ENSGT00940000161025	ENSGT00940000161457
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
P. kingsleyae	MODERN SPECIES	8	GAD1 (ENSPKIG00000006476)	gorasp2 (ENSPKIG00000006416)	TLK1 (ENSPKIG00000006268)	mettl8 (ENSPKIG00000006147)	dcaf17 (ENSPKIG00000006090) #7	cybrd1 (ENSPKIG00000006073) #8	DYNC1I2 (ENSPKIG00000005981) #10	slc25a12 (ENSPKIG00000005872) #11	metap1d (ENSPKIG00000005824) #15	DLX1 (ENSPKIG00000005799) #16	DLX2 (ENSPKIG00000005783) #18	ITGA6 (ENSPKIG00000005544) #19	PDK1 (ENSPKIG00000005371) #20	ENSPKIG00000005245	RAPGEF4 (ENSPKIG00000005099) #21	MAP3K20 (ENSPKIG00000004982) #22	ENSPKIG00000004895	ENSPKIG00000004755	SP3 (ENSPKIG00000004665) #24	OLA1 (ENSPKIG00000004546) ##25	sp9 (ENSPKIG00000004479) #26	CIR1 (ENSPKIG00000004454) #27	ENSPKIG00000004428	chrna1 (ENSPKIG00000004406) #32	glb1l (ENSPKIG00000004321)	ENSPKIG00000004202	ENSPKIG00000004144	sumo3a (ENSPKIG00000004110)	ENSPKIG00000004085	TSPEAR (ENSPKIG00000004043)	ENSPKIG00000004005
Clupeocephala	ANCESTRAL SPECIES	3	ENSGT00940000155526.i.a	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT00940000156851.c #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000161457
Otomorpha	ANCESTRAL SPECIES	11							ENSGT00940000155442.o.e #10	ENSGT00940000155963.e.c #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127.g #18	ENSGT00940000155353.a.a.a #19	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT00910000144296.c	ENSGT00940000156851.d.d #32	ENSGT01030000234635.a.b.a.b.a ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938
Otophysi	ANCESTRAL SPECIES	103	ENSGT00940000160673.g	ENSGT00940000155526.i.a	ENSGT00950000182984.b.a.b.f.c	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155353.a.a.a #19	ENSGT00940000160127.g #18	ENSGT00940000160029 #16	ENSGT00390000007069 #14	ENSGT00940000155963.e.c #11	ENSGT00940000155442.o.e #10	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT00910000144296.c	ENSGT00940000156851.d.d #32	ENSGT01030000234635.a.b.a.b.a ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000161457	ENSGT00940000159938
Cyprinoidei	ANCESTRAL SPECIES	81	ENSGT00940000159309	ENSGT00940000160673.g	ENSGT00940000155526.i.a	ENSGT00950000182984.b.a.b.f.c	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155353.a.a.a #19	ENSGT00940000160127.g #18	ENSGT00940000160029 #16	ENSGT00390000007069 #14	ENSGT00940000155442.o.e #10	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT00910000144296.c	ENSGT01030000234635.a.b.a.b.a ##33	ENSGT00940000156582.o #34	ENSGT00940000154298.b.b ##35	ENSGT00940000156582.p #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000164071.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	499											ENSGT00390000007069.a #14	ENSGT00940000155442.o.e #10	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.b.a.a	ENSGT00940000164127.a.b	ENSGT00940000156075.a.a.e #21	ENSGT00940000161352.f.a.a #22	ENSGT00940000155436.v #23	ENSGT00940000155099.k.a #24	ENSGT00940000162304.c #26	ENSGT00730000111135.m #27	ENSGT00390000013474.a.l #28	ENSGT00390000004153.c.b #29	ENSGT00910000144296.c.b	ENSGT01030000234635.a.b.a.b.a.a.a ##33	ENSGT00940000156582.o.b #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e.b	ENSGT00940000161025	ENSGT00940000164071.a	ENSGT00940000159938.c	ENSGT00940000161308.a.b
Goldfish	MODERN SPECIES	49	il10rb (ENSCARG00000001744)	ENSCARG00000001732	ENSCARG00000001729	hycc2 (ENSCARG00000066955)	ENSCARG00000064206	sp5a (ENSCARG00000063937)	GAD1 (ENSCARG00000060480)	tlk1a (ENSCARG00000058411)	ITGA6 (ENSCARG00000056600) #19	dlx2a (ENSCARG00000056463) #18	dlx1a (ENSCARG00000056451) #16	hat1 (ENSCARG00000056171) #14	dync1i2a (ENSCARG00000055508) #10	ENSCARG00000055334	RAPGEF4 (ENSCARG00000054818) #21	MAP3K20 (ENSCARG00000054704) #22	cdca7a (ENSCARG00000054678) #23	sp3a (ENSCARG00000054660) #24	sp9 (ENSCARG00000054640) #26	CIR1 (ENSCARG00000054627) #27	scrn3 (ENSCARG00000054593) #28	GPR155 (ENSCARG00000054194) #29	wipf1a (ENSCARG00000054142)	chn1 (ENSCARG00000053986) ##33	ATF2 (ENSCARG00000053707) #34	ENSCARG00000053591	lnpa (ENSCARG00000053555)	evx2 (ENSCARG00000053531)	hoxd12a (ENSCARG00000053524)	hoxd11a (ENSCARG00000053512)	hoxd10a (ENSCARG00000053495)
Cyprininae_a	ANCESTRAL SPECIES	222											ENSGT00390000007069.a #14	ENSGT00940000155442.o.e.a #10	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.b.a.a.a	ENSGT00940000164127.a.b	ENSGT00940000156075.a.a.e #21	ENSGT00940000161352.f.a.a #22	ENSGT00940000155436.v #23	ENSGT00940000155099.k.a.a #24	ENSGT00940000162304.c #26	ENSGT00730000111135.m #27	ENSGT00390000013474.a.l #28	ENSGT00390000004153.c.b #29	ENSGT00910000144296.c.b	ENSGT01030000234635.a.b.a.b.a.a.a ##33	ENSGT00940000156582.o.b #34	ENSGT00940000156582.p #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e.b	ENSGT00940000161025	ENSGT00940000164071.a.b	ENSGT00940000161457
Common carp reference	MODERN SPECIES	46	ENSCCRG00000069267	ENSCCRG00000077355	ubr3 (ENSCCRG00000036035)	MYO3B (ENSCCRG00000071355)	sp5a (ENSCCRG00000073894)	GAD1 (ENSCCRG00000032841)	tlk1a (ENSCCRG00000033045)	ITGA6 (ENSCCRG00000011732) #19	dlx2a (ENSCCRG00000070912) #18	dlx1a (ENSCCRG00000081573) #16	hat1 (ENSCCRG00000032601) #14	dync1i2a (ENSCCRG00000062262) #10	ENSCCRG00000050425	ENSCCRG00000022837	RAPGEF4 (ENSCCRG00000028794) #21	MAP3K20 (ENSCCRG00000043419) #22	cdca7a (ENSCCRG00000043431) #23	sp3a (ENSCCRG00000001758) #24	CIR1 (ENSCCRG00000001825) #27	sp9 (ENSCCRG00000054122) #26	scrn3 (ENSCCRG00000001811) #28	GPR155 (ENSCCRG00000063804) #29	wipf1a (ENSCCRG00000070448)	chn1 (ENSCCRG00000056937) ##33	ATF2 (ENSCCRG00000032757) #34	atp5mc3a (ENSCCRG00000032743) ##35	lnpa (ENSCCRG00000036763)	evx2 (ENSCCRG00000044599)	hoxd13a (ENSCCRG00000002199)	hoxd12a (ENSCCRG00000074101)	hoxd11a (ENSCCRG00000061064)
Golden-line barbel	MODERN SPECIES	323	MCHR1 (ENSSGRG00000054288)	MYO3B (ENSSGRG00000054292)	sp5a (ENSSGRG00000054293)	GAD1 (ENSSGRG00000054294)	ENSSGRG00000054295	ENSSGRG00000054297	tlk1a (ENSSGRG00000054298)	dcaf17 (ENSSGRG00000054299) #7	ITGA6 (ENSSGRG00000054301) #19	dlx2a (ENSSGRG00000054303) #18	dlx1a (ENSSGRG00000054304) #16	hat1 (ENSSGRG00000054305) #14	dync1i2a (ENSSGRG00000054347) #10	ENSSGRG00000054431	ENSSGRG00000054432 #21	MAP3K20 (ENSSGRG00000054433) #22
Cyprininae	ANCESTRAL SPECIES	210						ENSGT00940000155526.i.a.c	ENSGT00950000182984.b.a.b.f.c.b	ENSGT00940000155353.a.a.a.a #19	ENSGT00940000160127.g.b #18	ENSGT00940000160029 #16	ENSGT00390000007069.b #14	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.b.a.b	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a.a	ENSGT00940000156075.a.a.f #21	ENSGT00940000161352.f.a.b #22	ENSGT00940000155436.u #23	ENSGT00940000162304.d #26	ENSGT00730000111135.n #27	ENSGT00390000013474.a.k #28	ENSGT00390000004153.c.a #29	ENSGT00910000144296.c.a	ENSGT01030000234635.a.b.a.b.a.a.b ##33	ENSGT00940000156582.o.a #34	ENSGT00940000154298.b.b ##35	ENSGT00390000001859.e.a	ENSGT00940000161457	ENSGT00940000159938.d	ENSGT00940000161308.a.a	ENSGT00940000158266	ENSGT00940000161503.a.b
Goldfish	MODERN SPECIES	27	mettl8 (ENSCARG00000033515)	dcaf17 (ENSCARG00000033568) #7	ITGA6 (ENSCARG00000033841) #19	dlx2a (ENSCARG00000034671) #18	dlx1a (ENSCARG00000034675) #16	hat1 (ENSCARG00000034693) #14	dync1i2a (ENSCARG00000034813) #10	ENSCARG00000035235	ENSCARG00000035242	ENSCARG00000035246	ENSCARG00000035250	ENSCARG00000035254	PDK1 (ENSCARG00000035315) #20	ENSCARG00000038901	RAPGEF4 (ENSCARG00000039080) #21	MAP3K20 (ENSCARG00000042934) #22	ENSCARG00000042987	cdca7a (ENSCARG00000042997) #23	sp3a (ENSCARG00000043040) #24	sp9 (ENSCARG00000043082) #26	scrn3 (ENSCARG00000043106) #28	GPR155 (ENSCARG00000043338) #29	wipf1a (ENSCARG00000045706)	chn1 (ENSCARG00000045752) ##33	ATF2 (ENSCARG00000046955) #34	atp5mc3a (ENSCARG00000047231) ##35	lnpa (ENSCARG00000047330)	evx2 (ENSCARG00000047437)	hoxd12a (ENSCARG00000047459)	hoxd11a (ENSCARG00000047476)	hoxd10a (ENSCARG00000047486)
Cyprininae_a	ANCESTRAL SPECIES	391				ENSGT00940000155526.i.a.c	ENSGT00950000182984.b.a.b.f.c.b	ENSGT00940000155353.a.a.a.a #19	ENSGT00940000160127.g.b #18	ENSGT00940000160029 #16	ENSGT00390000007069.b #14	ENSGT00940000155442.o.e.b #10	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.b.a.b	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.b.a.a.b	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a.a	ENSGT00940000156075.a.a.f #21	ENSGT00940000161352.f.a.b #22	ENSGT00940000155436.u #23	ENSGT00940000155099.k.a.b #24	ENSGT00940000162304.d #26	ENSGT00730000111135.n #27	ENSGT00390000013474.a.k #28	ENSGT00390000004153.c.a #29	ENSGT00910000144296.c.a	ENSGT01030000234635.a.b.a.b.a.a.b ##33	ENSGT00940000156582.o.a #34	ENSGT00940000154298.b.b ##35	ENSGT00390000001859.e.a
Common carp reference	MODERN SPECIES	41	GAD1 (ENSCCRG00000009363)	tlk1a (ENSCCRG00000006355)	mettl8 (ENSCCRG00000006330)	dcaf17 (ENSCCRG00000069664) #7	ITGA6 (ENSCCRG00000005395) #19	dlx2a (ENSCCRG00000059835) #18	dlx1a (ENSCCRG00000062325) #16	hat1 (ENSCCRG00000035201) #14	dync1i2a (ENSCCRG00000062649) #10	ENSCCRG00000073513	ENSCCRG00000030815	PDK1 (ENSCCRG00000054587) #20	ENSCCRG00000016694	ENSCCRG00000078553	RAPGEF4 (ENSCCRG00000012810) #21	MAP3K20 (ENSCCRG00000013232) #22	cdca7a (ENSCCRG00000013247) #23	sp3a (ENSCCRG00000001735) #24	sp9 (ENSCCRG00000068752) #26	CIR1 (ENSCCRG00000062897) #27	scrn3 (ENSCCRG00000065357) #28	GPR155 (ENSCCRG00000012886) #29	wipf1a (ENSCCRG00000053670)	chn1 (ENSCCRG00000035748) ##33	ATF2 (ENSCCRG00000074915) #34	atp5mc3a (ENSCCRG00000076700) ##35	lnpa (ENSCCRG00000040872)	evx2 (ENSCCRG00000074291)	hoxd13a (ENSCCRG00000044492)	hoxd12a (ENSCCRG00000044499)	hoxd11a (ENSCCRG00000044502)
Golden-line barbel	MODERN SPECIES	99	sp5a (ENSSGRG00000050614)	ENSSGRG00000050613	tlk1a (ENSSGRG00000050095)	ENSSGRG00000050087	cybrd1 (ENSSGRG00000050084) #8	ITGA6 (ENSSGRG00000049976) #19	dlx2a (ENSSGRG00000049970) #18	dlx1a (ENSSGRG00000049968) #16	hat1 (ENSSGRG00000049874) #14	dync1i2a (ENSSGRG00000049528) #10	ENSSGRG00000049282	ENSSGRG00000049249	PDK1 (ENSSGRG00000049204) #20	ENSSGRG00000049191	RAPGEF4 (ENSSGRG00000049190) #21	MAP3K20 (ENSSGRG00000049167) #22	sp3a (ENSSGRG00000049164) #24	sp9 (ENSSGRG00000049162) #26	scrn3 (ENSSGRG00000049160) #28	GPR155 (ENSSGRG00000049159) #29	ENSSGRG00000049158	chn1 (ENSSGRG00000049155) ##33	ATF2 (ENSSGRG00000049146) #34	atp5mc3a (ENSSGRG00000049126) ##35	ENSSGRG00000049125	lnpa (ENSSGRG00000049124)	ENSSGRG00000049123	hoxd12a (ENSSGRG00000049122)	hoxd11a (ENSSGRG00000049121)	hoxd10a (ENSSGRG00000049120)	hoxd9a (ENSSGRG00000049119)
Zebrafish	MODERN SPECIES	24	tlk1a (ENSDARG00000042467)	mettl8 (ENSDARG00000017359)	dcaf17 (ENSDARG00000074909) #7	cybrd1 (ENSDARG00000095577) #8	ITGA6 (ENSDARG00000042282) #19	ENSDARG00000099348 #19	dlx2a (ENSDARG00000079964) #18	dlx1a (ENSDARG00000013125) #16	hat1 (ENSDARG00000034916) #14	dync1i2a (ENSDARG00000078386) #10	ftr52p (ENSDARG00000011652)	PDK1 (ENSDARG00000013128) #20	ENSDARG00000063580	ENSDARG00000093284	RAPGEF4 (ENSDARG00000079872) #21	map3k20a (ENSDARG00000006978) #22	cdca7a (ENSDARG00000077620) #23	sp3a (ENSDARG00000001549) #24	sp9 (ENSDARG00000099374) #26	CIR1 (ENSDARG00000099733) #27	scrn3 (ENSDARG00000016611) #28	GPR155 (ENSDARG00000090804) #29	wipf1a (ENSDARG00000104300)	chn1 (ENSDARG00000101735) ##33	ATF2 (ENSDARG00000023903) #34	atp5mc3a (ENSDARG00000017775) ##35	ENSDARG00000063646	lnpa (ENSDARG00000115902)	evx2 (ENSDARG00000059255)	hoxd13a (ENSDARG00000059256)	hoxd12a (ENSDARG00000059263)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT00940000161737	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000159938	ENSGT00940000161308
NAME_4	ANCESTRAL SPECIES	32															ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000159938	ENSGT00940000161308	ENSGT00940000158266
Sheepshead minnow	MODERN SPECIES	244					mettl14 (ENSCVAG00000018016)	PRSS12 (ENSCVAG00000018087)	NDST4 (ENSCVAG00000018201)	ugt8 (ENSCVAG00000018225)	spock3 (ENSCVAG00000018239)	SLC44A1 (ENSCVAG00000018295)	DLC1 (ENSCVAG00000018437)	LONRF1 (ENSCVAG00000000483)	ENSCVAG00000018466	ENSCVAG00000018478	RAPGEF4 (ENSCVAG00000018570) #21	MAP3K20 (ENSCVAG00000018582) #22	cdca7a (ENSCVAG00000000487) #23	sp3a (ENSCVAG00000018614) #24	OLA1 (ENSCVAG00000018673) ##25	sp9 (ENSCVAG00000018687) #26	CIR1 (ENSCVAG00000018732) #27	scrn3 (ENSCVAG00000000491) #28	GPR155 (ENSCVAG00000018822) #29	ENSCVAG00000018858 ##33	ATF2 (ENSCVAG00000018917) #34	ENSCVAG00000018929	lnpa (ENSCVAG00000018936)	evx2 (ENSCVAG00000018947)	hoxd12a (ENSCVAG00000000494)	hoxd11a (ENSCVAG00000018956)	hoxd10a (ENSCVAG00000018959)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
NAME_6	ANCESTRAL SPECIES	20	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT00940000161737	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000159938	ENSGT00940000161308	ENSGT00940000158266
Sailfin molly	MODERN SPECIES	1303														ENSPLAG00000013070	RAPGEF4 (ENSPLAG00000013056) #21	MAP3K20 (ENSPLAG00000012985) #22	cdca7a (ENSPLAG00000012940) #23	sp3a (ENSPLAG00000012924) #24
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT00940000161737	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT00940000156851.c #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000159938
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT00940000161737	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c #29	ENSGT00940000156851.c #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000159938	ENSGT00940000161308
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT00940000161737	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c.d #29	ENSGT00940000156851.c #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025	ENSGT00940000159938	ENSGT00940000161308
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728 #7	ENSGT00950000183197.b.b #8	ENSGT00940000155442.p #10	ENSGT00940000155963.f #11	ENSGT00390000007069 #14	ENSGT00940000160029 #16	ENSGT00940000160127 #18	ENSGT00940000155353.a.a.a #19	ENSGT00940000161737	ENSGT01030000234646.B.a.a.b #20	ENSGT00940000164127.a	ENSGT00940000156075.a.a #21	ENSGT00940000161352.f.a #22	ENSGT00940000163262.a	ENSGT00940000155436 #23	ENSGT00940000155099.k.a #24	ENSGT00390000000673.a.a ##25	ENSGT00940000162304 #26	ENSGT00730000111135 #27	ENSGT00390000013474.a #28	ENSGT00390000004153.c.c #29	ENSGT00390000004153.c.d #29	ENSGT00940000156851.c #32	ENSGT01030000234635.a.b.a.b.b.b ##33	ENSGT00940000156582 #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e	ENSGT00940000161025
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
P. nyererei	MODERN SPECIES	304	GORASP2 (ENSPNYG00000006871)	TLK1 (ENSPNYG00000006934)	mettl8 (ENSPNYG00000006996)	dcaf17 (ENSPNYG00000007030) #7	cybrd1 (ENSPNYG00000007046) #8	DYNC1I2 (ENSPNYG00000007070) #10	SLC25A12 (ENSPNYG00000007140) #11	hat1 (ENSPNYG00000007197) #14	dlx1a (ENSPNYG00000007242) #16	dlx2b (ENSPNYG00000007264) #18	ITGA6 (ENSPNYG00000007378) #19	ENSPNYG00000007522	PDK1 (ENSPNYG00000007542) #20	ENSPNYG00000007590	RAPGEF4 (ENSPNYG00000007721) #21	MAP3K20 (ENSPNYG00000007810) #22	cdca7a (ENSPNYG00000007860) #23	sp3a (ENSPNYG00000007887) #24	OLA1 (ENSPNYG00000007912) ##25	sp9 (ENSPNYG00000007944) #26	CIR1 (ENSPNYG00000007957) #27	scrn3 (ENSPNYG00000007975) #28	GPR155 (ENSPNYG00000008006) #29	CHRNA1 (ENSPNYG00000008079) #32	CHN1 (ENSPNYG00000008179) ##33	ATF2 (ENSPNYG00000008206) #34	ENSPNYG00000008239	lnpa (ENSPNYG00000008259)	evx2 (ENSPNYG00000008275)	hoxd12a (ENSPNYG00000008289)	hoxd11a (ENSPNYG00000008301)
Lyretail cichlid	MODERN SPECIES	303	GORASP2 (ENSNBRG00000012377)	TLK1 (ENSNBRG00000012303)	mettl8 (ENSNBRG00000012279)	ENSNBRG00000012271 #7	cybrd1 (ENSNBRG00000012224) #8	DYNC1I2 (ENSNBRG00000012194) #10	SLC25A12 (ENSNBRG00000012110) #11	hat1 (ENSNBRG00000012067) #14	dlx1a (ENSNBRG00000012049) #16	dlx2b (ENSNBRG00000012035) #18	ITGA6 (ENSNBRG00000011975) #19	NUP62 (ENSNBRG00000011951)	PDK1 (ENSNBRG00000011921) #20	ENSNBRG00000011903	RAPGEF4 (ENSNBRG00000011826) #21	MAP3K20 (ENSNBRG00000011776) #22	cdca7a (ENSNBRG00000011744) #23	sp3a (ENSNBRG00000011729) #24	OLA1 (ENSNBRG00000011698) ##25	sp9 (ENSNBRG00000011681) #26	CIR1 (ENSNBRG00000011656) #27	scrn3 (ENSNBRG00000011629) #28	ENSNBRG00000011602 #29	GPR155 (ENSNBRG00000011562) #29	CHRNA1 (ENSNBRG00000011535) #32	ENSNBRG00000011504 ##33	ATF2 (ENSNBRG00000011448) #34	ENSNBRG00000011428	lnpa (ENSNBRG00000011403)	evx2 (ENSNBRG00000011378)	hoxd12a (ENSNBRG00000011364)
Nile tilapia	MODERN SPECIES	7	GORASP2 (ENSONIG00000008759)	TLK1 (ENSONIG00000008753)	mettl8 (ENSONIG00000008751)	dcaf17 (ENSONIG00000008745) #7	cybrd1 (ENSONIG00000008742) #8	DYNC1I2 (ENSONIG00000008740) #10	SLC25A12 (ENSONIG00000008730) #11	ENSONIG00000008700	hat1 (ENSONIG00000008726) #14	dlx1a (ENSONIG00000008725) #16	dlx2 (ENSONIG00000027504) #18	ITGA6 (ENSONIG00000008711) #19	ENSONIG00000008710	PDK1 (ENSONIG00000008703) #20	RAPGEF4 (ENSONIG00000008678) #21	MAP3K20 (ENSONIG00000008674) #22	cdca7a (ENSONIG00000008671) #23	sp3a (ENSONIG00000008666) #24	OLA1 (ENSONIG00000033011) ##25	sp9 (ENSONIG00000008657) #26	CIR1 (ENSONIG00000008652) #27	scrn3 (ENSONIG00000008648) #28	GPR155 (ENSONIG00000039647) #29	GPR155 (ENSONIG00000039357) #29	CHRNA1 (ENSONIG00000008636) #32	CHN1 (ENSONIG00000008634) ##33	ATF2 (ENSONIG00000008629) #34	ENSONIG00000008625	ENSONIG00000034657	lnpa (ENSONIG00000008621)	evx2 (ENSONIG00000008619)
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Bicolor damselfish	MODERN SPECIES	366	GORASP2 (ENSSPAG00000006145)	TLK1 (ENSSPAG00000006178)	mettl8 (ENSSPAG00000006252)	dcaf17 (ENSSPAG00000006283) #7	cybrd1 (ENSSPAG00000006303) #8	DYNC1I2 (ENSSPAG00000006323) #10	SLC25A12 (ENSSPAG00000006408) #11	hat1 (ENSSPAG00000006490) #14	dlx1a (ENSSPAG00000006546) #16	dlx2b (ENSSPAG00000006558) #18	ITGA6 (ENSSPAG00000006569) #19	NUP62 (ENSSPAG00000006643)	PDK1 (ENSSPAG00000006651) #20	ENSSPAG00000006699	RAPGEF4 (ENSSPAG00000006795) #21	MAP3K20 (ENSSPAG00000006871) #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000161352.f.a #22
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00940000160673.f	ENSGT00940000155526.i.a.e	ENSGT00390000008686.d.b.d	ENSGT00950000182984.b.a.b.e.a	ENSGT00390000012728 #7	ENSGT00950000183197.b.b.f #8	ENSGT00940000155442.p.c #10	ENSGT00940000155963.e.g.b #11	ENSGT00390000007069.d #14	ENSGT00940000160029.d #16	ENSGT00940000160127.j.a #18	ENSGT00940000155353.a.a.a.g #19	ENSGT01030000234646.B.a.a.b.c #20	ENSGT00940000164127.a.h	ENSGT00940000156075.a.a.h #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436.w #23	ENSGT00940000155099.k.a.e #24	ENSGT00390000000673.a.a.b ##25	ENSGT00390000000673.a.a.a.a ##25	ENSGT00940000162304.f #26	ENSGT00390000013474.a.n #28	ENSGT00390000004153.c.f #29	ENSGT00940000156851.c.c #32	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##33	ENSGT01000000221798	ENSGT00940000161826.C.bb	ENSGT00940000156582.m #34	ENSGT00940000157981.a.a.b	ENSGT00390000001859.e.c	ENSGT00940000161025.m.a
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000155526.i.a.e	ENSGT00390000008686.d.b.d	ENSGT00950000182984.b.a.b.e.a	ENSGT01060000252571	ENSGT00390000012728 #7	ENSGT00950000183197.b.b.f #8	ENSGT00940000155442.p.c #10	ENSGT00940000155963.e.g.b #11	ENSGT00390000007069.d #14	ENSGT00940000160029.d #16	ENSGT00940000160127.j.a #18	ENSGT00940000155353.a.a.a.g #19	ENSGT01030000234646.B.a.a.b.c #20	ENSGT00940000164127.a.h	ENSGT00940000156075.a.a.h #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436.w #23	ENSGT00940000155099.k.a.e #24	ENSGT00390000000673.a.a.b ##25	ENSGT00940000162304.f #26	ENSGT00390000013474.a.n #28	ENSGT00390000004153.c.f #29	ENSGT00940000156851.c.c #32	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##33	ENSGT01000000221798	ENSGT00940000161826.C.bb	ENSGT00940000156582.m #34	ENSGT00940000157981.a.a.b.a	ENSGT00390000001859.e.c	ENSGT00940000161025.m.a	ENSGT00940000161457
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000155526.i.a.e	ENSGT00390000008686.d.b.d	ENSGT00950000182984.b.a.b.e.a	ENSGT01060000252571	ENSGT00390000012728 #7	ENSGT00950000183197.b.b.f #8	ENSGT00940000155442.p.c #10	ENSGT00940000155963.e.g.b #11	ENSGT00390000007069.d #14	ENSGT00940000160029.d #16	ENSGT00940000160127.j.a #18	ENSGT00940000155353.a.a.a.g #19	ENSGT01030000234646.B.a.a.b.c #20	ENSGT00940000164127.a.h	ENSGT00940000156075.a.a.h #21	ENSGT00940000161352.f.a #22	ENSGT00940000155436.w #23	ENSGT00940000163262.a.b	ENSGT00940000155099.k.a.e #24	ENSGT00390000000673.a.a.b ##25	ENSGT00940000162304.f #26	ENSGT00390000013474.a.n #28	ENSGT00390000004153.c.f #29	ENSGT00940000156851.c.c #32	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##33	ENSGT01000000221798	ENSGT00940000161826.C.bb	ENSGT00940000156582.m #34	ENSGT00940000157981.a.a.b.a	ENSGT00390000001859.e.c	ENSGT00940000161025.m.a
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000058643	dcaf17 (ENSOMYG00000012642) #7	cybrd1 (ENSOMYG00000012658) #8	DYNC1I2 (ENSOMYG00000012715) #10	SLC25A12 (ENSOMYG00000013162) #11	hat1 (ENSOMYG00000016767) #14	DLX1 (ENSOMYG00000017230) #16	DLX2 (ENSOMYG00000017238) #18	ENSOMYG00000051604	ENSOMYG00000076373	ITGA6 (ENSOMYG00000017471) #19	ENSOMYG00000073157	PDK1 (ENSOMYG00000020648) #20	ENSOMYG00000020897	RAPGEF4 (ENSOMYG00000021112) #21	MAP3K20 (ENSOMYG00000022111) #22	cdca7a (ENSOMYG00000022186) #23	ENSOMYG00000053267	sp3a (ENSOMYG00000022218) #24	OLA1 (ENSOMYG00000022232) ##25	sp9 (ENSOMYG00000022238) #26	scrn3 (ENSOMYG00000053819) #28	GPR155 (ENSOMYG00000022302) #29	CHRNA1 (ENSOMYG00000022578) #32	ENSOMYG00000023400 ##33	ENSOMYG00000060012	ENSOMYG00000023622	ATF2 (ENSOMYG00000024297) #34	ENSOMYG00000024344	lnpa (ENSOMYG00000024451)	evx2 (ENSOMYG00000024554)
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000155526.i.a.e	ENSGT00390000008686.d.b.d	ENSGT00950000182984.b.a.b.e.a	ENSGT01060000252571	ENSGT00390000012728 #7	ENSGT00950000183197.b.b.f #8	ENSGT00940000155442.p.c #10	ENSGT00940000155963.e.g.b #11	ENSGT00390000007069.d #14	ENSGT00940000160029.d #16	ENSGT00940000160127.j.a #18	ENSGT00940000155353.a.a.a.g #19	ENSGT01030000234646.B.a.a.b.c #20	ENSGT00940000164127.a.h	ENSGT00940000156075.a.a.h #21	ENSGT00940000161352.f.a #22	ENSGT00940000163262.a.b	ENSGT00940000155099.k.a.e #24	ENSGT00390000000673.a.a.b ##25	ENSGT00940000162304.f #26	ENSGT00390000013474.a.n #28	ENSGT00390000004153.c.f #29	ENSGT00940000156851.c.c #32	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##33	ENSGT01000000221798	ENSGT00940000156582.m #34	ENSGT00940000157981.a.a.b.a	ENSGT00390000001859.e.c	ENSGT00940000161025.m.a	ENSGT00940000161457	ENSGT00940000159938.a
Chinook salmon	MODERN SPECIES	22	GAD1 (ENSOTSG00005010802)	GORASP2 (ENSOTSG00005011161)	TLK1 (ENSOTSG00005011179)	ENSOTSG00005011460	dcaf17 (ENSOTSG00005011461) #7	cybrd1 (ENSOTSG00005011463) #8	DYNC1I2 (ENSOTSG00005011476) #10	SLC25A12 (ENSOTSG00005013480) #11	hat1 (ENSOTSG00005013596) #14	dlx1a (ENSOTSG00005013597) #16	DLX2 (ENSOTSG00005013598) #18	ITGA6 (ENSOTSG00005013612) #19	PDK1 (ENSOTSG00005017590) #20	ENSOTSG00005017772	RAPGEF4 (ENSOTSG00005017777) #21	MAP3K20 (ENSOTSG00005018322) #22	sp3a (ENSOTSG00005018324) #24	OLA1 (ENSOTSG00005018327) ##25	sp9 (ENSOTSG00005018430) #26	scrn3 (ENSOTSG00005018434) #28	GPR155 (ENSOTSG00005018442) #29	CHRNA1 (ENSOTSG00005018531) #32	ENSOTSG00005018687 ##33	ENSOTSG00005018690	ATF2 (ENSOTSG00005018692) #34	ENSOTSG00005018698	lnpa (ENSOTSG00005018779)	evx2 (ENSOTSG00005018785)	HOXD13 (ENSOTSG00005018789)	hoxd12a (ENSOTSG00005018793)	hoxd11a (ENSOTSG00005018797)
Huchen	MODERN SPECIES	210	sp5a (ENSHHUG00000045517)	ENSHHUG00000045533	GORASP2 (ENSHHUG00000045806)	TLK1 (ENSHHUG00000000027)	dcaf17 (ENSHHUG00000000753) #7	cybrd1 (ENSHHUG00000000770) #8	DYNC1I2 (ENSHHUG00000000789) #10	SLC25A12 (ENSHHUG00000001456) #11	hat1 (ENSHHUG00000001681) #14	dlx1a (ENSHHUG00000001708) #16	DLX2 (ENSHHUG00000001735) #18	ITGA6 (ENSHHUG00000001765) #19	PDK1 (ENSHHUG00000001836) #20	ENSHHUG00000001929	RAPGEF4 (ENSHHUG00000001945) #21	MAP3K20 (ENSHHUG00000002320) #22	cdca7a (ENSHHUG00000002412) #23
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Cyprinoidei	ANCESTRAL SPECIES	58	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b.r.a	ENSGT00940000156568.r.b	ENSGT00940000157820.a.b	ENSGT00900000141103	ENSGT00940000155559.a.b	ENSGT00950000183059.b.a.b.r	ENSGT00940000155103.a.b.ld	ENSGT00940000156983.a.a.q	ENSGT00940000157361.a	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154866.B.b	ENSGT00940000156075.a.b ##21	ENSGT00940000161352.f.b #22	ENSGT00950000183165.b.a.e.b.d.a.a.b.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00390000010308	ENSGT00940000156862	ENSGT00940000153804.B	ENSGT00940000159521	ENSGT00950000183080.a.a.e.b.d.b	ENSGT00940000156107.e.b	ENSGT00940000154281	ENSGT00940000155159.C	ENSGT00940000155858.f	ENSGT00390000000159
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b.a.a #22
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00510000046929.a.e	ENSGT00390000013512.e	ENSGT00940000162154.i	ENSGT00940000155079.b.r.a.a	ENSGT00940000156568.r.b.b	ENSGT00940000155559.a.b.b	ENSGT00950000183059.b.a.b.r.a	ENSGT00940000155103.a.b.ld.d	ENSGT00940000156983.a.a.q.c	ENSGT00940000157361.a.n.a	ENSGT00390000006916.c.r.b	ENSGT00940000153431.b.l	ENSGT00940000154866.B.b.a	ENSGT00940000156075.a.b.d ##21	ENSGT00940000161352.f.b.a.b #22	ENSGT00940000161352.f.b.a.a #22	ENSGT00950000183165.b.a.e.b.d.a.a.b.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f.b	ENSGT00940000164444.b.b	ENSGT00390000009940.d	ENSGT00390000010308.a	ENSGT00950000183071.a.a.a.e.b.g.b	ENSGT00940000156862.u	ENSGT00940000153931.b.b.a	ENSGT00940000160614.q.a	ENSGT01000000218756	ENSGT00940000159521.p	ENSGT00950000183080.a.a.e.b.d.b.b	ENSGT00940000156107.e.b.o	ENSGT00940000154281.a
Common carp reference	MODERN SPECIES	10	ENSCCRG00000039409	pou4f1 (ENSCCRG00000065486)	ENSCCRG00000072545	rtn4a (ENSCCRG00000003232)	rps27a (ENSCCRG00000077093)	mtif2 (ENSCCRG00000003201)	CCDC88A (ENSCCRG00000003032)	ENSCCRG00000009375	bcl11ab (ENSCCRG00000067565)	zgc:113227 (ENSCCRG00000082368)	ccdc85al (ENSCCRG00000074359)	sec23b (ENSCCRG00000066696)	dtd1 (ENSCCRG00000058793)	ENSCCRG00000015749	rapgef4b (ENSCCRG00000051570) ##21	map3k20a (ENSCCRG00000051412) #22	tuba8l4 (ENSCCRG00000034597)	si:ch211-114n24.6 (ENSCCRG00000030481)	bin1b (ENSCCRG00000030674)	ihhb (ENSCCRG00000030683)	ENSCCRG00000016734	nhej1 (ENSCCRG00000030548)	atg3 (ENSCCRG00000036537)	ENSCCRG00000001354	ENSCCRG00000049196	ENSCCRG00000049167	dzip1 (ENSCCRG00000049082)	ENSCCRG00000049055	ENSCCRG00000048277	abcc4 (ENSCCRG00000048266)	sox21a (ENSCCRG00000074247)
Goldfish	MODERN SPECIES	46	ptprfa (ENSCARG00000010112)	hyi (ENSCARG00000021035)	med8 (ENSCARG00000021072)	pbx1b (ENSCARG00000021128)	ENSCARG00000021175	ENSCARG00000021188	prkag1 (ENSCARG00000021206)	ACVR1B (ENSCARG00000022063)	tgm5l (ENSCARG00000022432)	zgc:113227 (ENSCARG00000022437)	ccdc85al (ENSCARG00000022444)	sec23b (ENSCARG00000022465)	dtd1 (ENSCARG00000022633)	ENSCARG00000022643	rapgef4b (ENSCARG00000022768) ##21	map3k20a (ENSCARG00000027305) #22	ENSCARG00000027388	bin1b (ENSCARG00000027455)	ihhb (ENSCARG00000027508)	ENSCARG00000027533	ENSCARG00000027546	atg3 (ENSCARG00000027561)	GPR161 (ENSCARG00000027845)	ENSCARG00000027847	CLDN10 (ENSCARG00000027866)	dzip1 (ENSCARG00000027970)	CLDN10 (ENSCARG00000027987)	ENSCARG00000027999	ABCC4 (ENSCARG00000028129)	sox21a (ENSCARG00000031074)	ccdc65 (ENSCARG00000031079)
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00510000046929.a.e	ENSGT00390000013512.e	ENSGT00940000162154.i	ENSGT00940000155079.b.r.a.a	ENSGT00940000156568.r.b.b	ENSGT00940000155559.a.b.b	ENSGT00950000183059.b.a.b.r.a	ENSGT00940000155103.a.b.ld.d	ENSGT00940000156983.a.a.q.c	ENSGT00940000157361.a.n.a	ENSGT00390000006916.c.r.b	ENSGT00940000153431.b.l	ENSGT00940000154866.B.b.a	ENSGT00940000156075.a.b.d ##21	ENSGT00940000163262.b	ENSGT00940000161352.f.b.a.b #22	ENSGT00950000183165.b.a.e.b.d.a.a.b.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f.b	ENSGT00940000164444.b.b	ENSGT00390000009940	ENSGT00390000010308.a	ENSGT00950000182900.C.x	ENSGT00950000183071.a.a.a.e.b.g.b	ENSGT00940000156862.u	ENSGT00940000153931.b.b.a	ENSGT00940000160614.q.a	ENSGT01000000218756	ENSGT00940000159521.p	ENSGT00950000183080.a.a.e.b.d.b.b	ENSGT00940000156107.e.b.o
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00940000155041.j	ENSGT00510000046929.a.e	ENSGT00390000013512.e	ENSGT00940000162154.i	ENSGT00940000155079.b.r.a.a	ENSGT00940000156568.r.b.b	ENSGT00940000155559.a.b.b	ENSGT00950000183059.b.a.b.r.a	ENSGT00940000155103.a.b.ld.d	ENSGT00940000156983.a.a.q.c	ENSGT00940000157361.a.n.a	ENSGT00390000006916.c.r.b	ENSGT00940000153431.b.l	ENSGT00940000154866.B.b.a	ENSGT00940000156075.a.b.d ##21	ENSGT00940000161352.f.b.a.b #22	ENSGT00940000161352.f.b.a.a #22	ENSGT00950000183165.b.a.e.b.d.a.a.b.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f.b	ENSGT00940000164444.b.b	ENSGT00390000009940.d	ENSGT00390000010308.a	ENSGT00950000183071.a.a.a.e.b.g.b	ENSGT00940000156862.u	ENSGT00940000153931.b.b.a	ENSGT00940000160614.q.a	ENSGT01000000218756	ENSGT00940000159521.p	ENSGT00950000183080.a.a.e.b.d.b.b	ENSGT00940000156107.e.b.o
Common carp reference	MODERN SPECIES	16	ENSCCRG00000058100	pou4f1 (ENSCCRG00000061366)	ENSCCRG00000067179	ENSCCRG00000075026	rtn4a (ENSCCRG00000076656)	rps27a (ENSCCRG00000056881)	ENSCCRG00000002664	ENSCCRG00000039501	ENSCCRG00000023460	bcl11ab (ENSCCRG00000059640)	ccdc85al (ENSCCRG00000031030)	sec23b (ENSCCRG00000063762)	dtd1 (ENSCCRG00000060922)	ENSCCRG00000030632	rapgef4b (ENSCCRG00000051953) ##21	map3k20a (ENSCCRG00000014411) #22	ENSCCRG00000054715	bin1b (ENSCCRG00000025728)	ihhb (ENSCCRG00000082819)	nhej1 (ENSCCRG00000012452)	atg3 (ENSCCRG00000012433)	ENSCCRG00000032946	dzip1 (ENSCCRG00000075600)	cldn10a (ENSCCRG00000002360)	abcc4 (ENSCCRG00000048306)	ENSCCRG00000070176	fkbp11 (ENSCCRG00000075677)	arf3b (ENSCCRG00000073176)	ENSCCRG00000047880	pa2g4a (ENSCCRG00000049835)	ENSCCRG00000068918
Goldfish	MODERN SPECIES	24	ENSCARG00000013717	pou4f1 (ENSCARG00000013708)	ENSCARG00000013692	ENSCARG00000013690	rtn4a (ENSCARG00000013463)	ENSCARG00000013442	CCDC88A (ENSCARG00000011494)	ENSCARG00000011418	ENSCARG00000011397	bcl11ab (ENSCARG00000011389)	ccdc85al (ENSCARG00000011373)	sec23b (ENSCARG00000011302)	dtd1 (ENSCARG00000011273)	RIN2 (ENSCARG00000011249)	rapgef4b (ENSCARG00000009479) ##21	map3k20a (ENSCARG00000009371) #22	tuba8l4 (ENSCARG00000009345)	bin1b (ENSCARG00000008792)	ihhb (ENSCARG00000008737)	atg3 (ENSCARG00000008692)	ENSCARG00000006929	ENSCARG00000006859	dzip1 (ENSCARG00000006825)	cldn10a (ENSCARG00000006817)	abcc4 (ENSCARG00000005912)	sox21a (ENSCARG00000005829)	ENSCARG00000044386	fkbp11 (ENSCARG00000044339)	arf3b (ENSCARG00000044305)	ERBB3 (ENSCARG00000040804)	pa2g4a (ENSCARG00000040036)
Cyprininae	ANCESTRAL SPECIES	23											ENSGT00940000157361.a.n.b	ENSGT00390000006916.c.q	ENSGT00940000153431.b.k	ENSGT00940000154866.B.b.b	ENSGT00940000156075.a.b.c ##21	ENSGT00940000161352.f.b.b #22	ENSGT00950000182882.A.b.b.f.a	ENSGT00940000164444.b.a	ENSGT00390000010308.b	ENSGT00940000157829.m.a	ENSGT00950000183071.a.a.a.e.b.g.a	ENSGT00940000155232.t.a.b.b.l	ENSGT00940000156862.v	ENSGT00940000155232.t.a.b.b.k	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.b	ENSGT00940000160614.q.b	ENSGT00940000153804.B	ENSGT00940000159521.o	ENSGT00950000183080.a.a.e.b.d.b.a
Cyprininae_a	ANCESTRAL SPECIES	30	ENSGT00940000162154.j	ENSGT00940000155079.b.r.a.b	ENSGT00940000156568.r.b.a	ENSGT00940000157820.a.b	ENSGT00900000141103	ENSGT00940000155559.a.b.a	ENSGT00950000183059.b.a.b.r.b	ENSGT00940000155103.a.b.ld.c	ENSGT00940000156983.a.a.q.d	ENSGT00940000163250.B.a.a.b	ENSGT00940000157361.a.n.b	ENSGT00390000006916.c.q	ENSGT00940000153431.b.k	ENSGT00940000154866.B.b.b	ENSGT00940000156075.a.b.c ##21	ENSGT00940000161352.f.b.b #22	ENSGT00950000182882.A.b.b.f.a	ENSGT00940000164444.b.a	ENSGT00390000009940.c	ENSGT00390000010308.b	ENSGT00940000157829.m.a	ENSGT00950000183071.a.a.a.e.b.g.a	ENSGT00940000155232.t.a.b.b.l	ENSGT00940000156862.v	ENSGT00940000155232.t.a.b.b.k	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.b	ENSGT00940000160614.q.b	ENSGT00940000153804.B	ENSGT00940000159521.o
Golden-line barbel	MODERN SPECIES	33				rtn4a (ENSSGRG00000047428)	ENSSGRG00000047431	ENSSGRG00000047436	ENSSGRG00000047437	ENSSGRG00000047439	bcl11ab (ENSSGRG00000047440)	ccdc85al (ENSSGRG00000047445)	ENSSGRG00000047447	dtd1 (ENSSGRG00000047450)	dtd1 (ENSSGRG00000047451)	ENSSGRG00000047455	rapgef4b (ENSSGRG00000047468) ##21	map3k20a (ENSSGRG00000047640) #22	si:ch211-114n24.6 (ENSSGRG00000047658)	bin1b (ENSSGRG00000047843)	ihhb (ENSSGRG00000047845)	nhej1 (ENSSGRG00000047848)	ENSSGRG00000047849	ENSSGRG00000047851	atg3 (ENSSGRG00000047856)	ENSSGRG00000047904	ENSSGRG00000047905	CLDN10 (ENSSGRG00000047906)	dzip1 (ENSSGRG00000047907)	CLDN10 (ENSSGRG00000047908)	ENSSGRG00000047911	cldn10a (ENSSGRG00000047912)	abcc4 (ENSSGRG00000047917)
Zebrafish	MODERN SPECIES	21	rtn4a (ENSDARG00000044601)	rps27a (ENSDARG00000032725)	mtif2 (ENSDARG00000063213)	CCDC88A (ENSDARG00000078440)	ENSDARG00000063257	ENSDARG00000058892	bcl11ab (ENSDARG00000063153)	zgc:113227 (ENSDARG00000058874)	si:dkey-261j15.2 (ENSDARG00000096411)	ccdc85al (ENSDARG00000005343)	sec23b (ENSDARG00000019360)	ENSDARG00000096346	dtd1 (ENSDARG00000044628)	RIN2 (ENSDARG00000077040)	rapgef4b (ENSDARG00000075924) ##21	map3k20a (ENSDARG00000044615) #22	tuba8l4 (ENSDARG00000006260)	si:ch211-114n24.6 (ENSDARG00000036700)	bin1b (ENSDARG00000058820)	ihhb (ENSDARG00000058815)	nhej1 (ENSDARG00000058893)	atg3 (ENSDARG00000009350)	GPR161 (ENSDARG00000058903)	HS6ST3 (ENSDARG00000071217)	ENSDARG00000058906	dzip1 (ENSDARG00000000943)	ENSDARG00000058930	cldn10a (ENSDARG00000058937)	abcc4 (ENSDARG00000058953)	sox21a (ENSDARG00000031664)	ccdc65 (ENSDARG00000032005)
Clupeiformes	ANCESTRAL SPECIES	170			ENSGT00830000128380	ENSGT00940000160673.g.a	ENSGT00390000017846	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f.d	ENSGT00940000155442.o.f #10	ENSGT00940000157735 #15	ENSGT00940000160029.l #16	ENSGT00940000160127.h #18	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000161352.f.b #22	ENSGT00940000153979.A	ENSGT00940000153173.b.a.f	ENSGT00940000165279.d	ENSGT00950000182837.b.b.c.a	ENSGT00940000156712.a	ENSGT00940000164538	ENSGT00940000158202	ENSGT00940000155390	ENSGT00940000155041	ENSGT00390000009940	ENSGT00940000164444.b	ENSGT00950000182882.A.b.b.f	ENSGT00950000183165.b.a.e.a	ENSGT00940000154095.b.b.a.a	ENSGT00390000003164
Denticle herring	MODERN SPECIES	15	ssb (ENSDCDG00000014838)	ENSDCDG00000014844	ENSDCDG00000014849	ENSDCDG00000014853	ENSDCDG00000014859	gad1b (ENSDCDG00000014973)	gorasp2 (ENSDCDG00000020320)	tlk1b (ENSDCDG00000020358)	DYNC1I2 (ENSDCDG00000022199) #10	slc25a12 (ENSDCDG00000026194) #11	metap1d (ENSDCDG00000027400) #15	dlx2b (ENSDCDG00000027428) #18	itga6b (ENSDCDG00000027444) #19	ENSDCDG00000027555	rapgef4b (ENSDCDG00000027579) ##21	map3k20a (ENSDCDG00000028969) #22	gca (ENSDCDG00000028971)	ENSDCDG00000028977	etv5b (ENSDCDG00000029057)	cacnb4b (ENSDCDG00000029114)	SEMA5B (ENSDCDG00000031485)	ENSDCDG00000032059	TRAK2 (ENSDCDG00000032064)	STRADB (ENSDCDG00000032069)	NBEAL1 (ENSDCDG00000032124)	nhej1 (ENSDCDG00000032328)	ihhb (ENSDCDG00000032330)	bin1b (ENSDCDG00000032345)	si:ch211-114n24.6 (ENSDCDG00000032455)	PTPRN (ENSDCDG00000032478)	dnpep (ENSDCDG00000032505)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Salmoninae	ANCESTRAL SPECIES	182	ENSGT00940000161210.l	ENSGT00940000154201.a.a.b.d.cb.a.a	ENSGT00940000161259.B.b.g	ENSGT00730000111690.A.d.b.a	ENSGT00390000017846	ENSGT00940000155526.i.b.b.b	ENSGT00390000008686.d.a.h	ENSGT00950000182984.b.a.b.f.b	ENSGT00940000155442.o.d #10	ENSGT00940000155963.e.h.a #11	ENSGT00940000157735.c #15	ENSGT00940000160127.i.a #18	ENSGT00940000155353.a.a.b.e.b #19	ENSGT00940000164127.b.d	ENSGT00940000156075.a.b.f ##21	ENSGT00940000161352.f.b #22
Huchen	MODERN SPECIES	284	ENSHHUG00000036088	PTPRS (ENSHHUG00000036134)	FEM1A (ENSHHUG00000037913)	ENSHHUG00000037916	C2CD4C (ENSHHUG00000038222)	ENSHHUG00000038248	gorasp2 (ENSHHUG00000038594)	tlk1b (ENSHHUG00000038656)	DYNC1I2 (ENSHHUG00000039064) #10	slc25a12 (ENSHHUG00000039997) #11	metap1d (ENSHHUG00000040221) #15	dlx2b (ENSHHUG00000040229) #18	itga6b (ENSHHUG00000040247) #19	ENSHHUG00000040554	rapgef4b (ENSHHUG00000040586) ##21	ENSHHUG00000040763 #22	ENSHHUG00000040801	cdk5r1b (ENSHHUG00000040811)
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b.c #22
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000161210.l	ENSGT00940000154201.a.a.b.d.cb.a.a	ENSGT00940000161259.B.b.g	ENSGT00730000111690.A.d.b.a	ENSGT00390000017846	ENSGT00940000155526.i.b.b.b.a.a	ENSGT00390000008686.d.a.h	ENSGT00950000182984.b.a.b.f.b	ENSGT00940000155442.o.d #10	ENSGT00940000155963.e.h.a #11	ENSGT00940000157735.c #15	ENSGT00940000160127.i.a #18	ENSGT00940000155353.a.a.b.e.b #19	ENSGT00940000164127.b.d	ENSGT00940000156075.a.b.f ##21	ENSGT00940000161352.f.b.c #22	ENSGT00940000165265.f.b	ENSGT01000000215891.a	ENSGT00980000200268.b	ENSGT00940000164039.a.`b.a.b	ENSGT00940000164039.a.`b.a.a	ENSGT00940000164039.a.`b.b	ENSGT00990000205697.b	ENSGT01030000235105.d	ENSGT00940000156948.i.a.d	ENSGT00940000159258.c.d	ENSGT00940000161913.a	ENSGT00390000013841.db.a	ENSGT00950000183110.b.a.d	ENSGT00940000158961	ENSGT01100000263512.a.a.a.b.a.a.a
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000058421	ENSOMYG00000069904	gad1b (ENSOMYG00000016433)	ENSOMYG00000073105	gorasp2 (ENSOMYG00000016397)	tlk1b (ENSOMYG00000014281)	ENSOMYG00000064544	DYNC1I2 (ENSOMYG00000011096) #10	slc25a12 (ENSOMYG00000009598) #11	metap1d (ENSOMYG00000009044) #15	dlx2b (ENSOMYG00000008979) #18	ENSOMYG00000046486	itga6b (ENSOMYG00000008002) #19	ENSOMYG00000067860	ENSOMYG00000004913 ##21	ENSOMYG00000070292 #22	ENSOMYG00000051919	ENSOMYG00000077108	ENSOMYG00000055510	ENSOMYG00000058111	ENSOMYG00000067659	ENSOMYG00000075929	ENSOMYG00000002985	ENSOMYG00000002926	ENSOMYG00000002922	ENSOMYG00000025857	ENSOMYG00000002909	ENSOMYG00000060708	ENSOMYG00000057265	ENSOMYG00000002877	ENSOMYG00000002845
Salmo	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b.c #22
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000065535	ENSSSAG00000064741	ENSSSAG00000064729	ENSSSAG00000105208	ENSSSAG00000064706	gad1b (ENSSSAG00000084532)	tlk1b (ENSSSAG00000048668)	DYNC1I2 (ENSSSAG00000040455) #10	ENSSSAG00000116316	slc25a12 (ENSSSAG00000007329) #11	metap1d (ENSSSAG00000007134) #15	dlx2b (ENSSSAG00000122281) #18	itga6b (ENSSSAG00000006725) #19	ENSSSAG00000006687	ENSSSAG00000004664 ##21	ENSSSAG00000004469 #22	ENSSSAG00000100237	ENSSSAG00000004355	ENSSSAG00000058017	ENSSSAG00000092602	ENSSSAG00000057976	cah12 (ENSSSAG00000091058)	ENSSSAG00000057929	ENSSSAG00000057907	ENSSSAG00000057893	ENSSSAG00000056180	ENSSSAG00000052879	gpx4b (ENSSSAG00000052798)	ENSSSAG00000052790	RPAB1 (ENSSSAG00000052778)	ARHGAP45 (ENSSSAG00000052554)
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000161210.l	ENSGT00940000154201.a.a.b.d.cb.a.a	ENSGT00940000161259.B.b.g	ENSGT00730000111690.A.d.b.a	ENSGT00390000017846	ENSGT00940000155526.i.b.b.b.a.a	ENSGT00390000008686.d.a.h	ENSGT00950000182984.b.a.b.f.b	ENSGT00940000155442.o.d #10	ENSGT00940000155963.e.h.a #11	ENSGT00940000157735.c #15	ENSGT00940000160127.i.a #18	ENSGT00940000155353.a.a.b.e.b #19	ENSGT00940000164127.b.d	ENSGT00940000156075.a.b.f ##21	ENSGT00940000161352.f.b.d #22	ENSGT00940000165265.f.b	ENSGT01000000215891.a	ENSGT00980000200268.b	ENSGT00940000164039.a.`b.a.b	ENSGT00940000164039.a.ab	ENSGT00940000164039.a.`b.a.a	ENSGT00940000164039.a.`b.b	ENSGT00990000205697.b	ENSGT01030000235105.d	ENSGT00940000156948.i.a.d	ENSGT00940000159258.c.d	ENSGT00940000161913.a	ENSGT00390000013841.db.a	ENSGT00950000183110.b.a.d	ENSGT00940000158961
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000153617.A.a.b.i	ENSGT00940000161210.k	ENSGT00940000154716.hc.e.a	ENSGT00940000161259.B.b.h	ENSGT00940000155526.i.b.b.a	ENSGT00940000155526.i.b.b.b.a.b	ENSGT00390000008686.d.a.g	ENSGT00950000182984.b.a.b.f.a	ENSGT00940000155442.o.c #10	ENSGT00940000155963.e.h.b #11	ENSGT00940000157735.d #15	ENSGT00940000160127.i.b #18	ENSGT00940000155353.a.a.b.e.a #19	ENSGT00940000164127.b.c	ENSGT00940000156075.a.b.e ##21	ENSGT00940000161352.f.b.d #22	ENSGT00390000008812.b.b.a.b.b	ENSGT00940000165265.f.a	ENSGT01000000215891.b	ENSGT00980000200268.a	ENSGT00990000205697.a	ENSGT01030000235105.c	ENSGT00940000156948.i.a.c	ENSGT00940000159258.c.c	ENSGT00400000022326.b.a.b.b.b	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00940000157039.b.c	ENSGT00390000013700.bb	ENSGT00480000042679.b.b.e	ENSGT00940000155219.hb.a.c	ENSGT00390000006290
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000067219	ENSOMYG00000028921	ENSOMYG00000033055	ENSOMYG00000033196	ENSOMYG00000033342	gad1b (ENSOMYG00000033434)	gorasp2 (ENSOMYG00000033624)	tlk1b (ENSOMYG00000033688)	DYNC1I2 (ENSOMYG00000033966) #10	slc25a12 (ENSOMYG00000038053) #11	metap1d (ENSOMYG00000039319) #15	ENSOMYG00000072272	itga6b (ENSOMYG00000039830) #19	ENSOMYG00000077805	ENSOMYG00000040659 ##21	ENSOMYG00000040923 #22	ENSOMYG00000030913	ENSOMYG00000062537	ENSOMYG00000041407	ENSOMYG00000041410	ENSOMYG00000065691	ENSOMYG00000041418	ENSOMYG00000041448	ENSOMYG00000041494	ENSOMYG00000041832	ENSOMYG00000041843	ENSOMYG00000041847	SUGT1 (ENSOMYG00000041852)	ENSOMYG00000041862	PCDH8 (ENSOMYG00000041865)	ENSOMYG00000069266
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00940000155854.b.a.b.c	ENSGT00940000165115.b.a	ENSGT00940000153617.A.a.b.i	ENSGT00940000161210.k	ENSGT00940000154716.hc.e.a	ENSGT00940000155526.i.b.b.b.a.b	ENSGT00390000008686.d.a.g	ENSGT00950000182984.b.a.b.f.a	ENSGT00940000155442.o.c #10	ENSGT00940000155963.e.h.b #11	ENSGT00940000157735.d #15	ENSGT00940000160127.i.b #18	ENSGT00940000155353.a.a.b.e.a #19	ENSGT00940000164127.b.c	ENSGT00940000156075.a.b.e ##21	ENSGT00940000161352.f.b.d #22	ENSGT00390000008812.b.b.a.b.b	ENSGT00940000165265.f.a	ENSGT01000000215891.b	ENSGT00980000200268.a	ENSGT00990000205697.a	ENSGT01030000235105.c	ENSGT00940000156948.i.a.c	ENSGT00940000159258.c.c	ENSGT00400000022326.b.a.b.b.b	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00940000157039.b.c	ENSGT00390000013700.bb	ENSGT00480000042679.b.b.e	ENSGT00940000155219.hb.a.c	ENSGT00390000006290
Coho salmon	MODERN SPECIES	19	PTPRS (ENSOKIG00005042811)	FEM1A (ENSOKIG00005049162)	ENSOKIG00005049164	C2CD4C (ENSOKIG00005049172)	ENSOKIG00005049178	gad1b (ENSOKIG00005049323)	gorasp2 (ENSOKIG00005049884)	tlk1b (ENSOKIG00005049899)	DYNC1I2 (ENSOKIG00005049944) #10	slc25a12 (ENSOKIG00005050107) #11	metap1d (ENSOKIG00005050282) #15	dlx2b (ENSOKIG00005050309) #18	itga6b (ENSOKIG00005050343) #19	ENSOKIG00005050432	rapgef4b (ENSOKIG00005050487) ##21	ENSOKIG00005050573 #22	CDK5R1 (ENSOKIG00005050640)	epha4b (ENSOKIG00005050646)	ENSOKIG00005050653	ENSOKIG00005050656	ENSOKIG00005050657	ENSOKIG00005050658	EPHA4 (ENSOKIG00005050663)	ENSOKIG00005050676	ENSOKIG00005050703	EDNRB (ENSOKIG00005050709)	ENSOKIG00005050711	sugt1 (ENSOKIG00005050715)	CNMD (ENSOKIG00005050718)	PCDH8 (ENSOKIG00005050720)	CXorf38 (ENSOKIG00005050723)
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000161210.l	ENSGT00940000154201.a.a.b.d.cb.a.a	ENSGT00940000161259.B.b.g	ENSGT00730000111690.A.d.b.a.c	ENSGT00390000017846	ENSGT00940000155526.i.b.b.b.a.a	ENSGT00390000008686.d.a.h	ENSGT00950000182984.b.a.b.f.b	ENSGT00940000155442.o.d #10	ENSGT00940000155963.e.h.a #11	ENSGT00940000157735.c #15	ENSGT00940000160127.i.a #18	ENSGT00940000155353.a.a.b.e.b #19	ENSGT00940000164127.b.d	ENSGT00940000156075.a.b.f ##21	ENSGT00940000161352.f.b.d #22	ENSGT00940000165265.f.b	ENSGT01000000215891.a	ENSGT00980000200268.b	ENSGT00940000164039.a.`b.a.b	ENSGT00940000164039.a.ab	ENSGT00940000164039.a.`b.a.a	ENSGT00940000164039.a.`b.b	ENSGT00990000205697.b	ENSGT00940000156948.i.a.d	ENSGT00940000159258.c.d	ENSGT00940000161913.a	ENSGT00940000162287.B.a.a.b.b	ENSGT00390000013841.db.a	ENSGT00950000183110.b.a.d	ENSGT00940000158961
River trout	MODERN SPECIES	13	PTPRS (ENSSTUG00000024661)	FEM1A (ENSSTUG00000024207)	ENSSTUG00000024201	ENSSTUG00000024182	ENSSTUG00000024178	erich2 (ENSSTUG00000024141)	gad1b (ENSSTUG00000023823)	gorasp2 (ENSSTUG00000023773)	tlk1b (ENSSTUG00000022601)	DYNC1I2 (ENSSTUG00000022284) #10	slc25a12 (ENSSTUG00000022086) #11	metap1d (ENSSTUG00000021987) #15	dlx2b (ENSSTUG00000021970) #18	itga6b (ENSSTUG00000021101) #19	rapgef4b (ENSSTUG00000018520) ##21	ENSSTUG00000018413 #22	ENSSTUG00000018405	epha4b (ENSSTUG00000018279)	ENSSTUG00000018265	ENSSTUG00000018257	ENSSTUG00000018186	ENSSTUG00000018166	ENSSTUG00000018154	ENSSTUG00000018145	ENSSTUG00000018125	ENSSTUG00000018112	ENSSTUG00000018100	EPHA4 (ENSSTUG00000012058)	ENSSTUG00000010946	gpx4b (ENSSTUG00000010907)	ENSSTUG00000010882
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000159675	ENSGT00940000160165.b	ENSGT00900000141083.c.a	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b #22	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314	ENSGT00990000203766	ENSGT00940000171842	ENSGT00940000174809	ENSGT00940000163892.C.a.a	ENSGT00940000159258.c	ENSGT00940000161913.a	ENSGT00940000161259.B.b	ENSGT00940000178222	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00940000155854.b.a.b
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000159675	ENSGT00940000160165.b	ENSGT00900000141083.c.a	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b #22	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314	ENSGT00990000203766	ENSGT00940000171842	ENSGT00940000174809	ENSGT00940000163892.C.a.a	ENSGT00940000159258.c	ENSGT00940000161913.a	ENSGT00940000161259.B.b	ENSGT00940000178222	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00940000155854.b.a.b
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000159675	ENSGT00940000160165.b	ENSGT00900000141083.c.a	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b #22	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT01030000235341	ENSGT00990000203766	ENSGT00940000171842	ENSGT00940000174809	ENSGT00940000163892.C.a.a	ENSGT00940000159258.c	ENSGT00940000161913.a	ENSGT00940000161259.B.b	ENSGT00940000178222	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00940000155854.b.a.b
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000159675	ENSGT00940000160165.b	ENSGT00900000141083.c.a	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b #22	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT01030000235341.e	ENSGT00990000203766	ENSGT00940000171842	ENSGT01100000263557.A.a	ENSGT00940000163892.C.a.a	ENSGT00940000159258.c	ENSGT00940000161913.a	ENSGT00940000161259.B.b	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00940000155854.b.a.b	ENSGT00940000159170.d
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00950000183086.a.a.b.h.b	ENSGT00950000183179.b.b	ENSGT00940000159675	ENSGT00940000160165.b	ENSGT00900000141083.c.a	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000161352.f.b #22	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT01030000235341.e	ENSGT00990000203766	ENSGT00940000171842	ENSGT01100000263557.A.a	ENSGT00940000163892.C.a.a	ENSGT00940000159258.c	ENSGT00940000161913.a	ENSGT00940000161259.B.b	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00940000155854.b.a.b	ENSGT00940000159170.d
Japanese Medaka HdrR	MODERN SPECIES	8	ENSORLG00000026151	clstn2a (ENSORLG00000022231)	rbp2b (ENSORLG00000028914)	rbp1.1 (ENSORLG00000014005)	copb2 (ENSORLG00000014074)	dvl3a (ENSORLG00000014122)	ap2m1a (ENSORLG00000014164)	pcyt1aa (ENSORLG00000014200)	and3 (ENSORLG00000014208)	DYNC1I2 (ENSORLG00000014246) #10	slc25a12 (ENSORLG00000014305) #11	metap1d (ENSORLG00000014320) #15	itga6b (ENSORLG00000014364) #19	ENSORLG00000014379	rapgef4b (ENSORLG00000014413) ##21	ENSORLG00000014423 #22	ENSORLG00000014526	ENSORLG00000027827	ENSORLG00000028529	ENSORLG00000025502	epha4b (ENSORLG00000014565)	ENSORLG00000029982	ENSORLG00000029810	ENSORLG00000026319	ENSORLG00000028943	ENSORLG00000014572	ENSORLG00000014683	ENSORLG00000014722	GPX4 (ENSORLG00000014759)	ENSORLG00000014757	ENSORLG00000027948
Chinese medaka	MODERN SPECIES	522	clstn2a (ENSOSIG00000017760)	NMNAT3 (ENSOSIG00000020465)	rbp1.1 (ENSOSIG00000020468)	rbp2b (ENSOSIG00000020472)	copb2 (ENSOSIG00000020483)	dvl3a (ENSOSIG00000020491)	ap2m1a (ENSOSIG00000020528)	pcyt1aa (ENSOSIG00000020532)	and3 (ENSOSIG00000020533)	DYNC1I2 (ENSOSIG00000020580) #10	slc25a12 (ENSOSIG00000022063) #11	metap1d (ENSOSIG00000022361) #15	itga6b (ENSOSIG00000022367) #19	ENSOSIG00000022372	rapgef4b (ENSOSIG00000022441) ##21	ENSOSIG00000022712 #22	epha4b (ENSOSIG00000022815)	ENSOSIG00000022893	ENSOSIG00000022895	ENSOSIG00000022899	ENSOSIG00000022926	ENSOSIG00000022973	gpx4b (ENSOSIG00000022978)	C2CD4C (ENSOSIG00000022985)	FEM1A (ENSOSIG00000022990)	PTPRS (ENSOSIG00000023577)	ABHD17A (ENSOSIG00000023896)	SEMA6B (ENSOSIG00000023902)	ENSOSIG00000023903	rorcb (ENSOSIG00000023906)	sh3gl1a (ENSOSIG00000023908)
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
P. nyererei	MODERN SPECIES	299	zgc:136870 (ENSPNYG00000004207)	clstn2a (ENSPNYG00000004231)	NMNAT3 (ENSPNYG00000004294)	rbp1.1 (ENSPNYG00000004312)	rbp2b (ENSPNYG00000004334)	copb2 (ENSPNYG00000004364)	dvl3a (ENSPNYG00000004421)	ap2m1a (ENSPNYG00000004468)	pcyt1aa (ENSPNYG00000004498)	DYNC1I2 (ENSPNYG00000004520) #10	slc25a12 (ENSPNYG00000004566) #11	metap1d (ENSPNYG00000004632) #15	itga6b (ENSPNYG00000004683) #19	ENSPNYG00000004709	rapgef4b (ENSPNYG00000004732) ##21	ENSPNYG00000004795 #22	ENSPNYG00000004828	epha4b (ENSPNYG00000005040)	ENSPNYG00000005091	ENSPNYG00000005102	ENSPNYG00000005123	ENSPNYG00000005133	ENSPNYG00000005243	PIP5K1C (ENSPNYG00000005848)	gpx4b (ENSPNYG00000005898)	C2CD4C (ENSPNYG00000006019)	FEM1A (ENSPNYG00000006034)	PTPRS (ENSPNYG00000006055)	ABHD17A (ENSPNYG00000006137)	SEMA6B (ENSPNYG00000006186)	ENSPNYG00000006262
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Clown anemonefish	MODERN SPECIES	1597	clstn2a (ENSAOCG00000020100)	NMNAT3 (ENSAOCG00000020036)	rbp1.1 (ENSAOCG00000002751)	rbp2b (ENSAOCG00000002783)	copb2 (ENSAOCG00000019988)	dvl3a (ENSAOCG00000019897)	ap2m1a (ENSAOCG00000019817)	pcyt1aa (ENSAOCG00000001439)	and3 (ENSAOCG00000019759)	DYNC1I2 (ENSAOCG00000019739) #10	slc25a12 (ENSAOCG00000019677) #11	metap1d (ENSAOCG00000019615) #15	itga6b (ENSAOCG00000019592) #19	ENSAOCG00000001419	rapgef4b (ENSAOCG00000019479) ##21	MAP3K20 (ENSAOCG00000019387) #22
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000159675	ENSGT00940000160165.b	ENSGT00900000141083.c.a	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o #10	ENSGT00940000155963.e #11	ENSGT00940000157735 #15	ENSGT00940000155353.a.a.b #19	ENSGT00940000164127.b	ENSGT00940000156075.a.b ##21	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b #22	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314	ENSGT00990000203766	ENSGT00940000171842	ENSGT00940000174809	ENSGT00940000163892.C.a.a	ENSGT00940000159258.c	ENSGT00940000170739	ENSGT00940000161913.a	ENSGT00940000161259.B.b	ENSGT00940000178222	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Fugu	MODERN SPECIES	14	ENSTRUG00000000285	spsb4a (ENSTRUG00000023923)	clstn2a (ENSTRUG00000000290)	NMNAT3 (ENSTRUG00000000361)	rbp1.1 (ENSTRUG00000000390)	copb2 (ENSTRUG00000000411)	dvl3a (ENSTRUG00000000483)	ap2m1a (ENSTRUG00000000587)	pcyt1aa (ENSTRUG00000000674)	and3 (ENSTRUG00000025029)	ENSTRUG00000000748 #10	slc25a12 (ENSTRUG00000000852) #11	ENSTRUG00000001321 #19	ENSTRUG00000002461	rapgef4b (ENSTRUG00000002566) ##21	ENSTRUG00000004366 #22	epha4b (ENSTRUG00000006416)	ENSTRUG00000031436	ccl20 (ENSTRUG00000025674)	ENSTRUG00000007447	GPX4 (ENSTRUG00000009426)	C2CD4C (ENSTRUG00000009442)	FEM1A (ENSTRUG00000009479)	PTPRS (ENSTRUG00000003689)	ENSTRUG00000023054	ABHD17A (ENSTRUG00000004869)	SEMA6B (ENSTRUG00000005145)	ENSTRUG00000005512	rorcb (ENSTRUG00000005569)	sh3gl1a (ENSTRUG00000006047)	sema4e (ENSTRUG00000024948)
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Cottioidei	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Lumpfish	MODERN SPECIES	8	spsb4a (ENSCLMG00005009153)	clstn2a (ENSCLMG00005009148)	NMNAT3 (ENSCLMG00005009145)	rbp1.1 (ENSCLMG00005009141)	rbp2b (ENSCLMG00005009140)	copb2 (ENSCLMG00005008047)	dvl3a (ENSCLMG00005007983)	ap2m1a (ENSCLMG00005007959)	pcyt1aa (ENSCLMG00005007903)	and3 (ENSCLMG00005007900)	DYNC1I2 (ENSCLMG00005007699) #10	SLC25A12 (ENSCLMG00005002153) #11	metap1d (ENSCLMG00005002132) #15	ITGA6 (ENSCLMG00005001716) #19	rapgef4b (ENSCLMG00005008934) ##21	MAP3K20 (ENSCLMG00005008789) #22	ENSCLMG00005008786	ENSCLMG00005008785	ENSCLMG00005008784	epha4b (ENSCLMG00005008782)	ENSCLMG00005008780	ENSCLMG00005008779	ENSCLMG00005008778	ENSCLMG00005008777	ENSCLMG00005008576	ENSCLMG00005008482	GPX4 (ENSCLMG00005008479)	C2CD4C (ENSCLMG00005008478)	FEM1A (ENSCLMG00005008476)	PTPRS (ENSCLMG00005007467)	ENSCLMG00005007457
Eupecaria_C	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Eupercaria_incertae_sedis	ANCESTRAL SPECIES																	ENSGT00940000161352.f.b #22
Large yellow croaker	MODERN SPECIES	483	clstn2a (ENSLCRG00005023521)	NMNAT3 (ENSLCRG00005023515)	rbp1.1 (ENSLCRG00005023514)	rbp2b (ENSLCRG00005023513)	copb2 (ENSLCRG00005023427)	dvl3a (ENSLCRG00005023423)	ap2m1a (ENSLCRG00005023420)	pcyt1aa (ENSLCRG00005023416)	and3 (ENSLCRG00005023413)	DYNC1I2 (ENSLCRG00005022746) #10	slc25a12 (ENSLCRG00005022120) #11	metap1d (ENSLCRG00005022102) #15	itga6b (ENSLCRG00005021995) #19	ENSLCRG00005021988	rapgef4b (ENSLCRG00005021982) ##21	ENSLCRG00005021976 #22	ENSLCRG00005021919	epha4b (ENSLCRG00005021730)	ENSLCRG00005021728	ENSLCRG00005021727	ENSLCRG00005021726	ENSLCRG00005021677	ENSLCRG00005021495	gpx4b (ENSLCRG00005021491)	C2CD4C (ENSLCRG00005021490)	ENSLCRG00005021487	FEM1A (ENSLCRG00005021486)	PTPRS (ENSLCRG00005011272)	ENSLCRG00005011133	ABHD17A (ENSLCRG00005011127)	SEMA6B (ENSLCRG00005011123)
Cyclostomata	ANCESTRAL SPECIES	849																ENSGT00940000161352 #22	ENSGT00940000155436 #23
Hagfish	MODERN SPECIES	672											ENSEBUG00000006210	ENSEBUG00000013299	ENSEBUG00000009655	ENSEBUG00000002903	ENSEBUG00000004254	map3k20a (ENSEBUG00000016704) #22	ENSEBUG00000011524 #23	scrn2 (ENSEBUG00000016033) ##28	ENSEBUG00000013142 #27	sp9 (ENSEBUG00000006241) #26	ola1 (ENSEBUG00000006035) #25	ENSEBUG00000009623	ENSEBUG00000006531	armc8 (ENSEBUG00000006568)	ENSEBUG00000014438	ENSEBUG00000011490	ENSEBUG00000003187	rpl15 (ENSEBUG00000003172)	ENSEBUG00000000427
Ciona	DUPLICATION
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES																	ENSGT00940000161352.g.a #22
Ciona savignyi	MODERN SPECIES	122	ENSCSAVG00000006842	ENSCSAVG00000006835	ENSCSAVG00000006825	ENSCSAVG00000006823	ENSCSAVG00000006776	ENSCSAVG00000006771	ENSCSAVG00000006769	ENSCSAVG00000006764	ENSCSAVG00000006751	ENSCSAVG00000006749	ENSCSAVG00000006533	ENSCSAVG00000006532	ENSCSAVG00000006531	ENSCSAVG00000006323	ENSCSAVG00000006176	ENSCSAVG00000006173 #22	ENSCSAVG00000006171	ENSCSAVG00000006163	ENSCSAVG00000006158	ENSCSAVG00000006154	ENSCSAVG00000005412	ENSCSAVG00000005337	ENSCSAVG00000005333	ENSCSAVG00000004783	ENSCSAVG00000004779	ENSCSAVG00000004561	ENSCSAVG00000004557	ENSCSAVG00000004549	ENSCSAVG00000004545	ENSCSAVG00000004510	ENSCSAVG00000004508
Ciona intestinalis	MODERN SPECIES	13	ENSCING00000018412	ENSCING00000024977	ENSCING00000018730	ENSCING00000023368	ENSCING00000020962	ENSCING00000014082	ENSCING00000001893	ENSCING00000014212	ENSCING00000014213	ENSCING00000019365	ENSCING00000021397	ENSCING00000001891	ENSCING00000025147	ENSCING00000014215	ENSCING00000018770	ENSCING00000014220 #22	ENSCING00000022934	ENSCING00000021748	ENSCING00000001847	ENSCING00000014222	ENSCING00000014223	rxr (ENSCING00000001836)	ENSCING00000014227	ENSCING00000014230	ENSCING00000019460	ENSCING00000001835	ENSCING00000001833	ENSCING00000010894	ENSCING00000014231	ENSCING00000023398	ENSCING00000001827
Ciona	ANCESTRAL SPECIES																	ENSGT00940000161352.g.b #22
Ciona savignyi	MODERN SPECIES	187									ENSCSAVG00000000887	ENSCSAVG00000000889	ENSCSAVG00000000891	ENSCSAVG00000000898	ENSCSAVG00000000900	ENSCSAVG00000000901	ENSCSAVG00000000902	ENSCSAVG00000000903 #22	ENSCSAVG00000000909	ENSCSAVG00000000911	ENSCSAVG00000000913	ENSCSAVG00000000914	ENSCSAVG00000000919	ENSCSAVG00000000937	ENSCSAVG00000000957	ENSCSAVG00000000967	ENSCSAVG00000000968	ENSCSAVG00000000969	ENSCSAVG00000000972	ENSCSAVG00000001077	ENSCSAVG00000001101	ENSCSAVG00000001104	ENSCSAVG00000001106
Ciona	ANCESTRAL SPECIES																	ENSGT00940000161352.h #22
Ciona savignyi	MODERN SPECIES	13	ENSCSAVG00000002655	ENSCSAVG00000002639	ENSCSAVG00000002634	ENSCSAVG00000002631	ENSCSAVG00000002624	ENSCSAVG00000002494	ENSCSAVG00000002479	ENSCSAVG00000002417	ENSCSAVG00000002278	ENSCSAVG00000002080	ENSCSAVG00000002076	ENSCSAVG00000002073	ENSCSAVG00000002020	ENSCSAVG00000002016	ENSCSAVG00000002012	ENSCSAVG00000002000 #22	ENSCSAVG00000001996	ENSCSAVG00000001994