Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00400000022853	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000161450 #22	ENSGT00940000159375 #23	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c ##33	ENSGT00940000162878	ENSGT00940000161499	ENSGT00940000162436
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000160341 #9	ENSGT00400000022853	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000159375 #23	ENSGT00940000161450 #22	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c ##33	ENSGT00390000015513.a.a.b #35	ENSGT00390000015513.a.a.a #36	ENSGT00940000155211 #37	ENSGT00390000016390
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000018173 #7	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000161450 #22	ENSGT00940000159375 #23	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c ##33	ENSGT00390000015513.a.a.b #35	ENSGT00390000015513.a.a.a #36	ENSGT00940000155211 #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000018173 #7	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000161450 #22	ENSGT00940000159375 #23	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c ##33	ENSGT00390000015513.a.a.b #35	ENSGT00390000015513.a.a.a #36	ENSGT00940000155211 #37
Degu	MODERN SPECIES	225	PRDX5 (ENSODEG00000014933) #7	ENSODEG00000016089 #8	ESRRA (ENSODEG00000015769) #9	KCNK4 (ENSODEG00000015103) #10	GPR137 (ENSODEG00000016470) #11	BAD (ENSODEG00000016677) #12	PLCB3 (ENSODEG00000015366) #13	PPP1R14B (ENSODEG00000015767) #14	FKBP2 (ENSODEG00000015505) #15	VEGFB (ENSODEG00000016602) #16	DNAJC4 (ENSODEG00000016243) #17	NUDT22 (ENSODEG00000015641) #18	TRPT1 (ENSODEG00000015724) #19	FERMT3 (ENSODEG00000015869) #20	STIP1 (ENSODEG00000015289) #21	MACROD1 (ENSODEG00000015291) #22	FLRT1 (ENSODEG00000020298) #23	ENSODEG00000015747 #24	ENSODEG00000015780 #25	NAA40 (ENSODEG00000015735) #26	RCOR2 (ENSODEG00000015765) #27	MARK2 (ENSODEG00000017191) #28	SPINDOC (ENSODEG00000015595) #29	ZFTA (ENSODEG00000015496) #30	ENSODEG00000016120 #31	ATL3 (ENSODEG00000017260) #32	PLAAT3 (ENSODEG00000015571) #33	ENSODEG00000020437 #34	FBP2 (ENSODEG00000016600) #35	FBP1 (ENSODEG00000015932) #36	ENSODEG00000015655 #37
Long-tailed chinchilla	MODERN SPECIES	129	PRDX5 (ENSCLAG00000017097) #7	TRMT112 (ENSCLAG00000016885) #8	ESRRA (ENSCLAG00000016837) #9	KCNK4 (ENSCLAG00000016662) #10	GPR137 (ENSCLAG00000016909) #11	BAD (ENSCLAG00000017103) #12	PLCB3 (ENSCLAG00000016775) #13	PPP1R14B (ENSCLAG00000016868) #14	FKBP2 (ENSCLAG00000017246) #15	VEGFB (ENSCLAG00000016750) #16	DNAJC4 (ENSCLAG00000016759) #17	NUDT22 (ENSCLAG00000016346) #18	FERMT3 (ENSCLAG00000016183) #20	TRPT1 (ENSCLAG00000016380) #19	STIP1 (ENSCLAG00000017164) #21	MACROD1 (ENSCLAG00000016401) #22	FLRT1 (ENSCLAG00000016935) #23	OTUB1 (ENSCLAG00000017123) #24	COX8A (ENSCLAG00000017185) #25	NAA40 (ENSCLAG00000016890) #26	RCOR2 (ENSCLAG00000017016) #27	MARK2 (ENSCLAG00000017063) #28	SPINDOC (ENSCLAG00000016329) #29	ZFTA (ENSCLAG00000016548) #30	ENSCLAG00000016800 #31	ATL3 (ENSCLAG00000016950) #32	PLAAT3 (ENSCLAG00000017157) #33	PLAAT2 (ENSCLAG00000016552) ##33	FBP2 (ENSCLAG00000016623) #35	FBP1 (ENSCLAG00000017181) #36	ENSCLAG00000016743 #37
Guinea pig	MODERN SPECIES	42	TRMT112 (ENSCPOG00000030092) #8	ESRRA (ENSCPOG00000015411) #9	KCNK4 (ENSCPOG00000025100) #10	GPR137 (ENSCPOG00000015677) #11	ENSCPOG00000005670	PLCB3 (ENSCPOG00000021694) #13	PPP1R14B (ENSCPOG00000002930) #14	FKBP2 (ENSCPOG00000002928) #15	VEGFB (ENSCPOG00000032042) #16	DNAJC4 (ENSCPOG00000040213) #17	NUDT22 (ENSCPOG00000032982) #18	TRPT1 (ENSCPOG00000002923) #19	FERMT3 (ENSCPOG00000002919) #20	STIP1 (ENSCPOG00000002914) #21	FLRT1 (ENSCPOG00000020108) #23	MACROD1 (ENSCPOG00000011720) #22	OTUB1 (ENSCPOG00000022165) #24	COX8A (ENSCPOG00000031964) #25	NAA40 (ENSCPOG00000001891) #26	RCOR2 (ENSCPOG00000004737) #27	MARK2 (ENSCPOG00000004728) #28	SPINDOC (ENSCPOG00000004724) #29	ZFTA (ENSCPOG00000033792) #30	ENSCPOG00000004811 #31	ATL3 (ENSCPOG00000003766) #32	PLAAT3 (ENSCPOG00000034238) #33	PLAAT2 (ENSCPOG00000002122) ##33	FBP2 (ENSCPOG00000001636) #35	AOPEP (ENSCPOG00000038711) #37	FANCC (ENSCPOG00000032150)	PTCH1 (ENSCPOG00000002376)
Naked mole-rat female	MODERN SPECIES	14	PRDX5 (ENSHGLG00000010351) #7	TRMT112 (ENSHGLG00000011130) #8	ESRRA (ENSHGLG00000011668) #9	ENSHGLG00000044117	KCNK4 (ENSHGLG00000012923) #10	GPR137 (ENSHGLG00000010359) #11	BAD (ENSHGLG00000013154) #12	PPP1R14B (ENSHGLG00000041422) #14	FKBP2 (ENSHGLG00000037212) #15	ENSHGLG00000013921 #16	DNAJC4 (ENSHGLG00000010363) #17	NUDT22 (ENSHGLG00000012442) #18	TRPT1 (ENSHGLG00000013748) #19	STIP1 (ENSHGLG00000016796) #21	FLRT1 (ENSHGLG00000045678) #23	MACROD1 (ENSHGLG00000018799) #22	ENSHGLG00000011812 #24	COX8A (ENSHGLG00000012316) #25	NAA40 (ENSHGLG00000013175) #26	RCOR2 (ENSHGLG00000014109) #27	ENSHGLG00000011808 #28	SPINDOC (ENSHGLG00000034024) #29	ZFTA (ENSHGLG00000011849) #30	ENSHGLG00000037041 #31	ENSHGLG00000010138 #32	ENSHGLG00000033662 #33	ENSHGLG00000050757 ##33	ENSHGLG00000014812	ENSHGLG00000012161 #35	ENSHGLG00000012322	FBP1 (ENSHGLG00000050880) #36
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00400000022853	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000161450 #22	ENSGT00940000159375 #23	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c.d.b ##33	ENSGT00940000162878	ENSGT00940000154853.c.c ##33
Marmotini	ANCESTRAL SPECIES	6	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00400000022853	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000161450 #22	ENSGT00940000159375 #23	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c.d.b.b ##33	ENSGT00940000154853.c.c.a ##33	ENSGT00940000162878	ENSGT00940000154853.c.d.b.a.a ##33
Alpin marmot	MODERN SPECIES	3	ESRRA (ENSMMMG00000007925) #9	CATSPERZ (ENSMMMG00000007922)	KCNK4 (ENSMMMG00000007912) #10	GPR137 (ENSMMMG00000007790) #11	BAD (ENSMMMG00000007784) #12	PLCB3 (ENSMMMG00000007736) #13	PPP1R14B (ENSMMMG00000007711) #14	FKBP2 (ENSMMMG00000007672) #15	VEGFB (ENSMMMG00000007651) #16	DNAJC4 (ENSMMMG00000007635) #17	NUDT22 (ENSMMMG00000007628) #18	TRPT1 (ENSMMMG00000007609) #19	FERMT3 (ENSMMMG00000007580) #20	STIP1 (ENSMMMG00000007560) #21	FLRT1 (ENSMMMG00000007522) #23	MACROD1 (ENSMMMG00000007514) #22	OTUB1 (ENSMMMG00000007484) #24	COX8A (ENSMMMG00000007506) #25	NAA40 (ENSMMMG00000007472) #26	RCOR2 (ENSMMMG00000007445) #27	MARK2 (ENSMMMG00000006813) #28	SPINDOC (ENSMMMG00000006798) #29	ENSMMMG00000006783 #31	ATL3 (ENSMMMG00000006763) #32	PLAAT3 (ENSMMMG00000006751) #33	ENSMMMG00000006716 ##33	ENSMMMG00000006666 ##33	ENSMMMG00000006663	ENSMMMG00000006652 ##33	ENSMMMG00000006645	ENSMMMG00000006639 ##33
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00400000022853	ENSGT00940000160310 #10	ENSGT00940000153986.b.b #11	ENSGT00390000010740 #12	ENSGT00940000160539 #13	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b #20	ENSGT00940000154911 #21	ENSGT00940000161450 #22	ENSGT00940000159375 #23	ENSGT00390000006979.a #24	ENSGT00390000006255.b.b #25	ENSGT00390000014903 #26	ENSGT00940000154196.a #27	ENSGT00940000155031 #28	ENSGT00410000025985 #29	ENSGT00600000084617 #30	ENSGT00940000157482.d #31	ENSGT00940000158566 #32	ENSGT00940000154853.d #33	ENSGT00940000154853.c.d.b.a.b ##33
Squirrel	MODERN SPECIES	199	PRDX5 (ENSSTOG00000002393) #7	ESRRA (ENSSTOG00000019877) #9	TRMT112 (ENSSTOG00000019857) #8	KCNK4 (ENSSTOG00000008461) #10	GPR137 (ENSSTOG00000024794) #11	BAD (ENSSTOG00000008441) #12	PLCB3 (ENSSTOG00000008397) #13	PPP1R14B (ENSSTOG00000021959) #14	FKBP2 (ENSSTOG00000028785) #15	VEGFB (ENSSTOG00000014290) #16	DNAJC4 (ENSSTOG00000026335) #17	NUDT22 (ENSSTOG00000021715) #18	FERMT3 (ENSSTOG00000014271) #20	TRPT1 (ENSSTOG00000014285) #19	STIP1 (ENSSTOG00000014262) #21	MACROD1 (ENSSTOG00000034108) #22	FLRT1 (ENSSTOG00000019831) #23	OTUB1 (ENSSTOG00000026099) #24	COX8A (ENSSTOG00000011372) #25	NAA40 (ENSSTOG00000011363) #26	RCOR2 (ENSSTOG00000011347) #27	MARK2 (ENSSTOG00000020436) #28	SPINDOC (ENSSTOG00000008900) #29	ZFTA (ENSSTOG00000027225) #30	ENSSTOG00000000199 #31	ATL3 (ENSSTOG00000000194) #32	PLAAT3 (ENSSTOG00000022553) #33
Arctic ground squirrel	MODERN SPECIES	620	PRDX5 (ENSUPAG00010007537) #7	TRMT112 (ENSUPAG00010007547) #8	ESRRA (ENSUPAG00010007583) #9	CATSPERZ (ENSUPAG00010007594)	GPR137 (ENSUPAG00010007604) #11	BAD (ENSUPAG00010007644) #12	PLCB3 (ENSUPAG00010007660) #13	PPP1R14B (ENSUPAG00010007704) #14	FKBP2 (ENSUPAG00010007718) #15	VEGFB (ENSUPAG00010007726) #16	DNAJC4 (ENSUPAG00010007738) #17	NUDT22 (ENSUPAG00010007753) #18	TRPT1 (ENSUPAG00010007757) #19	FERMT3 (ENSUPAG00010007770) #20	STIP1 (ENSUPAG00010007782) #21	MACROD1 (ENSUPAG00010007872) #22	FLRT1 (ENSUPAG00010007939) #23	OTUB1 (ENSUPAG00010007945) #24	COX8A (ENSUPAG00010008008) #25	NAA40 (ENSUPAG00010008016) #26	RCOR2 (ENSUPAG00010008026) #27	MARK2 (ENSUPAG00010008066) #28	SPINDOC (ENSUPAG00010008697) #29	ZFTA (ENSUPAG00010008715) #30	RTN3 (ENSUPAG00010008723) #31	ATL3 (ENSUPAG00010008777) #32	PLAAT3 (ENSUPAG00010010461) #33	ENSUPAG00010010469 ##33
Eurasian red squirrel	MODERN SPECIES	2	CCDC88B (ENSSVLG00005016552)	PRDX5 (ENSSVLG00005017011) #7	ENSSVLG00005017157 #8	ESRRA (ENSSVLG00005017266) #9	KCNK4 (ENSSVLG00005017540) #10	GPR137 (ENSSVLG00005017667) #11	BAD (ENSSVLG00005018004) #12	PLCB3 (ENSSVLG00005018092) #13	PPP1R14B (ENSSVLG00005018431) #14	FKBP2 (ENSSVLG00005018547) #15	DNAJC4 (ENSSVLG00005018674) #17	NUDT22 (ENSSVLG00005018795) #18	TRPT1 (ENSSVLG00005018880) #19	FERMT3 (ENSSVLG00005019185) #20	STIP1 (ENSSVLG00005019327) #21	MACROD1 (ENSSVLG00005019517) #22	FLRT1 (ENSSVLG00005019639) #23	OTUB1 (ENSSVLG00005019708) #24	COX8A (ENSSVLG00005019802) #25	ENSSVLG00005019870 #26	ENSSVLG00005020084 #8	RCOR2 (ENSSVLG00005020151) #27	MARK2 (ENSSVLG00005020452) #28	ENSSVLG00005021665 #29	ZFTA (ENSSVLG00005021728) #30	RTN3 (ENSSVLG00005021816) #31	ATL3 (ENSSVLG00005022126) #32	PLAAT3 (ENSSVLG00005022200) #33	ENSSVLG00005022253	ENSSVLG00005022359 ##33	ENSSVLG00005022391