Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000160341 #9	ENSGT00400000022853 #10	ENSGT00940000160310 #11	ENSGT00940000153986.b.b #12	ENSGT00390000010740 #13	ENSGT00940000160539	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b	ENSGT00940000154911 #20	ENSGT00940000159375 #21	ENSGT00940000161450 #22	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #28	ENSGT00600000084617 #29	ENSGT00940000157482.d #30	ENSGT00940000158566 #31	ENSGT00940000154853.d #32	ENSGT00940000154853.c #33	ENSGT00390000015513.a.a.b #35	ENSGT00390000015513.a.a.a #37	ENSGT00940000155211	ENSGT00390000016390
Naked mole-rat female	MODERN SPECIES	14	PRDX5 (ENSHGLG00000010351) #7	TRMT112 (ENSHGLG00000011130) #8	ESRRA (ENSHGLG00000011668) #9	ENSHGLG00000044117 #10	KCNK4 (ENSHGLG00000012923) #11	GPR137 (ENSHGLG00000010359) #12	BAD (ENSHGLG00000013154) #13	PPP1R14B (ENSHGLG00000041422) #14	FKBP2 (ENSHGLG00000037212) #15	ENSHGLG00000013921 #16	DNAJC4 (ENSHGLG00000010363) #17	NUDT22 (ENSHGLG00000012442) #18	TRPT1 (ENSHGLG00000013748) #19	STIP1 (ENSHGLG00000016796) #20	FLRT1 (ENSHGLG00000045678) #21	MACROD1 (ENSHGLG00000018799) #22	ENSHGLG00000011812 #23	COX8A (ENSHGLG00000012316) #24	NAA40 (ENSHGLG00000013175) #25	RCOR2 (ENSHGLG00000014109) #26	ENSHGLG00000011808 #27	SPINDOC (ENSHGLG00000034024) #28	ZFTA (ENSHGLG00000011849) #29	ENSHGLG00000037041 #30	ENSHGLG00000010138 #31	ENSHGLG00000033662 #32	ENSHGLG00000050757 #33	ENSHGLG00000014812 #34	ENSHGLG00000012161 #35	ENSHGLG00000012322 #36	FBP1 (ENSHGLG00000050880) #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000018173 #7	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00940000160310 #11	ENSGT00940000153986.b.b #12	ENSGT00390000010740 #13	ENSGT00940000160539	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #28	ENSGT00600000084617 #29	ENSGT00940000157482.d #30	ENSGT00940000158566 #31	ENSGT00940000154853.d #32	ENSGT00940000154853.c #33	ENSGT00390000015513.a.a.b #35	ENSGT00390000015513.a.a.a #37	ENSGT00940000155211
Guinea pig	MODERN SPECIES	42	TRMT112 (ENSCPOG00000030092) #8	ESRRA (ENSCPOG00000015411) #9	KCNK4 (ENSCPOG00000025100) #11	GPR137 (ENSCPOG00000015677) #12	ENSCPOG00000005670	PLCB3 (ENSCPOG00000021694)	PPP1R14B (ENSCPOG00000002930) #14	FKBP2 (ENSCPOG00000002928) #15	VEGFB (ENSCPOG00000032042) #16	DNAJC4 (ENSCPOG00000040213) #17	NUDT22 (ENSCPOG00000032982) #18	TRPT1 (ENSCPOG00000002923) #19	FERMT3 (ENSCPOG00000002919)	STIP1 (ENSCPOG00000002914) #20	FLRT1 (ENSCPOG00000020108) #21	MACROD1 (ENSCPOG00000011720) #22	OTUB1 (ENSCPOG00000022165) #23	COX8A (ENSCPOG00000031964) #24	NAA40 (ENSCPOG00000001891) #25	RCOR2 (ENSCPOG00000004737) #26	MARK2 (ENSCPOG00000004728) #27	SPINDOC (ENSCPOG00000004724) #28	ZFTA (ENSCPOG00000033792) #29	ENSCPOG00000004811 #30	ATL3 (ENSCPOG00000003766) #31	PLAAT3 (ENSCPOG00000034238) #32	PLAAT2 (ENSCPOG00000002122) #33	FBP2 (ENSCPOG00000001636) #35	AOPEP (ENSCPOG00000038711)	FANCC (ENSCPOG00000032150)	PTCH1 (ENSCPOG00000002376)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000018173 #7	ENSGT00390000009268 #8	ENSGT00940000160341 #9	ENSGT00940000160310 #11	ENSGT00940000153986.b.b #12	ENSGT00390000010740 #13	ENSGT00940000160539	ENSGT00950000182985.b.b #14	ENSGT00940000157074 #15	ENSGT00940000161844 #16	ENSGT00510000048574 #17	ENSGT00390000017869 #18	ENSGT00390000002731 #19	ENSGT00390000013444.a.b.b	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #28	ENSGT00600000084617 #29	ENSGT00940000157482.d #30	ENSGT00940000158566 #31	ENSGT00940000154853.d #32	ENSGT00940000154853.c #33	ENSGT00390000015513.a.a.b #35	ENSGT00390000015513.a.a.a #37	ENSGT00940000155211
Long-tailed chinchilla	MODERN SPECIES	129	PRDX5 (ENSCLAG00000017097) #7	TRMT112 (ENSCLAG00000016885) #8	ESRRA (ENSCLAG00000016837) #9	KCNK4 (ENSCLAG00000016662) #11	GPR137 (ENSCLAG00000016909) #12	BAD (ENSCLAG00000017103) #13	PLCB3 (ENSCLAG00000016775)	PPP1R14B (ENSCLAG00000016868) #14	FKBP2 (ENSCLAG00000017246) #15	VEGFB (ENSCLAG00000016750) #16	DNAJC4 (ENSCLAG00000016759) #17	NUDT22 (ENSCLAG00000016346) #18	FERMT3 (ENSCLAG00000016183)	TRPT1 (ENSCLAG00000016380) #19	STIP1 (ENSCLAG00000017164) #20	MACROD1 (ENSCLAG00000016401) #22	FLRT1 (ENSCLAG00000016935) #21	OTUB1 (ENSCLAG00000017123) #23	COX8A (ENSCLAG00000017185) #24	NAA40 (ENSCLAG00000016890) #25	RCOR2 (ENSCLAG00000017016) #26	MARK2 (ENSCLAG00000017063) #27	SPINDOC (ENSCLAG00000016329) #28	ZFTA (ENSCLAG00000016548) #29	ENSCLAG00000016800 #30	ATL3 (ENSCLAG00000016950) #31	PLAAT3 (ENSCLAG00000017157) #32	PLAAT2 (ENSCLAG00000016552) #33	FBP2 (ENSCLAG00000016623) #35	FBP1 (ENSCLAG00000017181) #37	ENSCLAG00000016743
Degu	MODERN SPECIES	225	PRDX5 (ENSODEG00000014933) #7	ENSODEG00000016089 #8	ESRRA (ENSODEG00000015769) #9	KCNK4 (ENSODEG00000015103) #11	GPR137 (ENSODEG00000016470) #12	BAD (ENSODEG00000016677) #13	PLCB3 (ENSODEG00000015366)	PPP1R14B (ENSODEG00000015767) #14	FKBP2 (ENSODEG00000015505) #15	VEGFB (ENSODEG00000016602) #16	DNAJC4 (ENSODEG00000016243) #17	NUDT22 (ENSODEG00000015641) #18	TRPT1 (ENSODEG00000015724) #19	FERMT3 (ENSODEG00000015869)	STIP1 (ENSODEG00000015289) #20	MACROD1 (ENSODEG00000015291) #22	FLRT1 (ENSODEG00000020298) #21	ENSODEG00000015747 #23	ENSODEG00000015780 #24	NAA40 (ENSODEG00000015735) #25	RCOR2 (ENSODEG00000015765) #26	MARK2 (ENSODEG00000017191) #27	SPINDOC (ENSODEG00000015595) #28	ZFTA (ENSODEG00000015496) #29	ENSODEG00000016120 #30	ATL3 (ENSODEG00000017260) #31	PLAAT3 (ENSODEG00000015571) #32	ENSODEG00000020437	FBP2 (ENSODEG00000016600) #35	FBP1 (ENSODEG00000015932) #37	ENSODEG00000015655