Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c ##34	ENSGT00940000162878	ENSGT00940000161499 #35	ENSGT00940000162436 #36
Glires	ANCESTRAL SPECIES	1	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239 #37	ENSGT00940000154901.C.b.e
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239 #37	ENSGT00940000154901.C.b.e
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239 #37	ENSGT00940000154901.C.b.e
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239 #37	ENSGT00940000154901.C.b.e
Muroidea	ANCESTRAL SPECIES	2	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c #37	ENSGT00940000161239.d ##37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.c.a.a ##37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000009268.k #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.d ##37
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000165892	ENSGT00940000160539	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000159375 #21	ENSGT00940000161450 #22	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.d ##37	ENSGT00940000154901.C.b.e
Golden Hamster	MODERN SPECIES	617	Rps6ka4 (ENSMAUG00000014157) #7	Ccdc88b (ENSMAUG00000014942) #8	Prdx5 (ENSMAUG00000014789) #9	Trmt112 (ENSMAUG00000013650) #10	Esrra (ENSMAUG00000015311) #11	Catsperz (ENSMAUG00000013579) #12	Kcnk4 (ENSMAUG00000013496) #13	Gpr137 (ENSMAUG00000013567) #14	Bad (ENSMAUG00000013587) #15	ENSMAUG00000013396 #16	Vegfb (ENSMAUG00000013835) #17	Trpt1 (ENSMAUG00000014107) #18	Fermt3 (ENSMAUG00000014915) #19	Stip1 (ENSMAUG00000015020) #20	Flrt1 (ENSMAUG00000015484) #21	Macrod1 (ENSMAUG00000013811) #22	ENSMAUG00000013281 #23	Cox8a (ENSMAUG00000015109) #24	Naa40 (ENSMAUG00000013206) #25	Rcor2 (ENSMAUG00000013529) #26	ENSMAUG00000013126 #27	ENSMAUG00000015638 #28	ENSMAUG00000014179 #29	Spindoc (ENSMAUG00000013145) #30	Zfta (ENSMAUG00000013334) #31	ENSMAUG00000013612 #32	Atl3 (ENSMAUG00000014736) #33	Plaat3 (ENSMAUG00000013633) #34	Lgals12 (ENSMAUG00000014489) #35	Plaat5 (ENSMAUG00000013292) #36	Slc22a19 (ENSMAUG00000013315) #37
Chinese hamster chok1gshd	MODERN SPECIES	401	Trmt112 (ENSCGRG00001018319) #10	Esrra (ENSCGRG00001022118) #11	Catsperz (ENSCGRG00001023239) #12	Kcnk4 (ENSCGRG00001022320) #13	Gpr137 (ENSCGRG00001001170) #14	ENSCGRG00001013654	Plcb3 (ENSCGRG00001015760)	ENSCGRG00001017620 #16	Ppp1r14b (ENSCGRG00001018612)	Vegfb (ENSCGRG00001019009) #17	Dnajc4 (ENSCGRG00001021692)	Nudt22 (ENSCGRG00001001214)	Trpt1 (ENSCGRG00001008474) #18	Fermt3 (ENSCGRG00001013797) #19	Stip1 (ENSCGRG00001018895) #20	Macrod1 (ENSCGRG00001022618) #22	Flrt1 (ENSCGRG00001011678) #21	Otub1 (ENSCGRG00001012395) #23	Cox8a (ENSCGRG00001024928) #24	ENSCGRG00001004057 #25	Rcor2 (ENSCGRG00001008621) #26	Mark2 (ENSCGRG00001010551) #27	Spindoc (ENSCGRG00001001090) #30	Zfta (ENSCGRG00001004358) #31	Rtn3 (ENSCGRG00001018871) #32	Atl3 (ENSCGRG00001018013) #33	Plaat3 (ENSCGRG00001007573) #34	Lgals12 (ENSCGRG00001010564) #35	Plaat5 (ENSCGRG00001019087) #36	Slc22a19 (ENSCGRG00001022436) #37	ENSCGRG00001021584
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000009268.k #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.d ##37
Northern American deer mouse	MODERN SPECIES		Esrra (ENSPEMG00000010701) #11	Catsperz (ENSPEMG00000014337) #12	Kcnk4 (ENSPEMG00000017633) #13	Gpr137 (ENSPEMG00000016592) #14	Bad (ENSPEMG00000015834) #15	Plcb3 (ENSPEMG00000015923)	Ppp1r14b (ENSPEMG00000015080)	ENSPEMG00000018692 #16	Vegfb (ENSPEMG00000012050) #17	Dnajc4 (ENSPEMG00000018531)	Nudt22 (ENSPEMG00000002624)	Trpt1 (ENSPEMG00000013720) #18	Fermt3 (ENSPEMG00000017447) #19	ENSPEMG00000006132 #20	ENSPEMG00000009317	Macrod1 (ENSPEMG00000014855) #22	Flrt1 (ENSPEMG00000017136) #21	Otub1 (ENSPEMG00000014074) #23	Cox8a (ENSPEMG00000025233) #24	Naa40 (ENSPEMG00000014476) #25	Rcor2 (ENSPEMG00000018762) #26	Mark2 (ENSPEMG00000004482) #27	Spindoc (ENSPEMG00000005634) #30	Zfta (ENSPEMG00000015536) #31	ENSPEMG00000006921 #32	Atl3 (ENSPEMG00000017714) #33	Plaat3 (ENSPEMG00000015751) #34	Lgals12 (ENSPEMG00000002696) #35	Plaat5 (ENSPEMG00000007949) #36	ENSPEMG00000030267 ##37	Slc22a19 (ENSPEMG00000011237) #37
Prairie vole	MODERN SPECIES	16	ENSMOCG00000007447 #10	Esrra (ENSMOCG00000017945) #11	Catsperz (ENSMOCG00000013953) #12	Kcnk4 (ENSMOCG00000020536) #13	Gpr137 (ENSMOCG00000012626) #14	Bad (ENSMOCG00000007074) #15	Plcb3 (ENSMOCG00000003068)	Ppp1r14b (ENSMOCG00000017324)	ENSMOCG00000019729 #16	Vegfb (ENSMOCG00000021740) #17	Dnajc4 (ENSMOCG00000016715)	Nudt22 (ENSMOCG00000018073)	Trpt1 (ENSMOCG00000021342) #18	Fermt3 (ENSMOCG00000006698) #19	Stip1 (ENSMOCG00000013041) #20	Macrod1 (ENSMOCG00000011709) #22	Flrt1 (ENSMOCG00000013861) #21	ENSMOCG00000001410 #23	Cox8a (ENSMOCG00000002916) #24	Naa40 (ENSMOCG00000014326) #25	Rcor2 (ENSMOCG00000001766) #26	Mark2 (ENSMOCG00000015697) #27	Spindoc (ENSMOCG00000016927) #30	ENSMOCG00000016523 #31	ENSMOCG00000001558 #32	Atl3 (ENSMOCG00000014305) #33	Plaat3 (ENSMOCG00000016945) #34	Lgals12 (ENSMOCG00000019635) #35	Plaat5 (ENSMOCG00000016896) #36	Slc22a19 (ENSMOCG00000020438) #37	ENSMOCG00000001921
Murinae	ANCESTRAL SPECIES		ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.d ##37
Mus	ANCESTRAL SPECIES		ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000154901.C.b.e
Mus_A	ANCESTRAL SPECIES	16	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.d ##37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000018173 #9	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.c.a.a ##37
Mouse	MODERN SPECIES	10	Trmt112 (ENSMUSG00000038812) #10	Esrra (ENSMUSG00000024955) #11	Catsperz (ENSMUSG00000050623) #12	Kcnk4 (ENSMUSG00000024957) #13	Gpr137 (ENSMUSG00000024958) #14	Bad (ENSMUSG00000024959) #15	Plcb3 (ENSMUSG00000024960)	Ppp1r14b (ENSMUSG00000056612)	Fkbp2 (ENSMUSG00000056629)	Vegfb (ENSMUSG00000024962) #17	Dnajc4 (ENSMUSG00000024963)	Nudt22 (ENSMUSG00000037349)	Trpt1 (ENSMUSG00000047656) #18	Fermt3 (ENSMUSG00000024965) #19	Stip1 (ENSMUSG00000024966) #20	Macrod1 (ENSMUSG00000036278) #22	Flrt1 (ENSMUSG00000047787) #21	Otub1 (ENSMUSG00000024767) #23	Cox8a (ENSMUSG00000035885) #24	Naa40 (ENSMUSG00000024764) #25	Rcor2 (ENSMUSG00000024968) #26	Mark2 (ENSMUSG00000024969) #27	Spindoc (ENSMUSG00000024970) #30	Zfta (ENSMUSG00000053080) #31	Rtn3 (ENSMUSG00000024758) #32	Atl3 (ENSMUSG00000024759) #33	Plaat3 (ENSMUSG00000060675) #34	Lgals12 (ENSMUSG00000024972) #35	Plaat5 (ENSMUSG00000024973) #36	Slc22a19 (ENSMUSG00000024757) #37	Slc22a26 (ENSMUSG00000053303) ##37
Mus_C	ANCESTRAL SPECIES	25	ENSGT00390000018173 #9	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000161499 #35	ENSGT00940000162436 #36	ENSGT00940000161239.c.b #37	ENSGT00940000161239.c.a.a ##37
Steppe mouse	MODERN SPECIES	2692										ENSMSIG00000019463 #17	Dnajc4 (ENSMSIG00000019476)	ENSMSIG00000019513 #18	Nudt22 (ENSMSIG00000019552)	Fermt3 (ENSMSIG00000019566) #19	Stip1 (ENSMSIG00000019592) #20	Macrod1 (ENSMSIG00000019622) #22	Flrt1 (ENSMSIG00000019670) #21	Otub1 (ENSMSIG00000019681) #23	Cox8a (ENSMSIG00000019707) #24	Naa40 (ENSMSIG00000019717) #25	Rcor2 (ENSMSIG00000019762) #26	ENSMSIG00000019781	Mark2 (ENSMSIG00000019791) #27	Spindoc (ENSMSIG00000020022) #30	Zfta (ENSMSIG00000020051) #31	Rtn3 (ENSMSIG00000020070) #32	Atl3 (ENSMSIG00000020181) #33	Plaat3 (ENSMSIG00000020245) #34	Lgals12 (ENSMSIG00000020293) #35	Plaat5 (ENSMSIG00000020351) #36	ENSMSIG00000020382 #37
spretus	MODERN SPECIES	10	Prdx5 (MGP_SPRETEiJ_G0023525) #9	Trmt112 (MGP_SPRETEiJ_G0023526) #10	Esrra (MGP_SPRETEiJ_G0023527) #11	Catsperz (MGP_SPRETEiJ_G0023528) #12	Kcnk4 (MGP_SPRETEiJ_G0023529) #13	Gpr137 (MGP_SPRETEiJ_G0023530) #14	Bad (MGP_SPRETEiJ_G0023531) #15	Plcb3 (MGP_SPRETEiJ_G0023532)	MGP_SPRETEiJ_G0023533 #16	Vegfb (MGP_SPRETEiJ_G0023534) #17	Dnajc4 (MGP_SPRETEiJ_G0023535)	Nudt22 (MGP_SPRETEiJ_G0023536)	Trpt1 (MGP_SPRETEiJ_G0023537) #18	Fermt3 (MGP_SPRETEiJ_G0023538) #19	Stip1 (MGP_SPRETEiJ_G0023539) #20	Macrod1 (MGP_SPRETEiJ_G0023540) #22	Flrt1 (MGP_SPRETEiJ_G0023541) #21	Otub1 (MGP_SPRETEiJ_G0023542) #23	Cox8a (MGP_SPRETEiJ_G0023543) #24	Naa40 (MGP_SPRETEiJ_G0023544) #25	Rcor2 (MGP_SPRETEiJ_G0023545) #26	Mark2 (MGP_SPRETEiJ_G0023546) #27	Spindoc (MGP_SPRETEiJ_G0023547) #30	Zfta (MGP_SPRETEiJ_G0023548) #31	Rtn3 (MGP_SPRETEiJ_G0023549) #32	Atl3 (MGP_SPRETEiJ_G0023550) #33	Plaat3 (MGP_SPRETEiJ_G0023551) #34	Lgals12 (MGP_SPRETEiJ_G0023552) #35	MGP_SPRETEiJ_G0023553 #36	Slc22a19 (MGP_SPRETEiJ_G0023554) #37	MGP_SPRETEiJ_G0023555 ##37
Ryukyu mouse	MODERN SPECIES	10	Trmt112 (MGP_CAROLIEiJ_G0022615) #10	Esrra (MGP_CAROLIEiJ_G0022616) #11	Catsperz (MGP_CAROLIEiJ_G0022617) #12	Kcnk4 (MGP_CAROLIEiJ_G0022618) #13	Gpr137 (MGP_CAROLIEiJ_G0022619) #14	Bad (MGP_CAROLIEiJ_G0022620) #15	Plcb3 (MGP_CAROLIEiJ_G0022621)	MGP_CAROLIEiJ_G0022622	MGP_CAROLIEiJ_G0022623 #16	Vegfb (MGP_CAROLIEiJ_G0022624) #17	Dnajc4 (MGP_CAROLIEiJ_G0022625)	Nudt22 (MGP_CAROLIEiJ_G0022626)	Trpt1 (MGP_CAROLIEiJ_G0022627) #18	Fermt3 (MGP_CAROLIEiJ_G0022628) #19	Stip1 (MGP_CAROLIEiJ_G0022629) #20	Macrod1 (MGP_CAROLIEiJ_G0022630) #22	Flrt1 (MGP_CAROLIEiJ_G0022631) #21	MGP_CAROLIEiJ_G0022632 #23	Cox8a (MGP_CAROLIEiJ_G0022633) #24	Naa40 (MGP_CAROLIEiJ_G0022634) #25	Rcor2 (MGP_CAROLIEiJ_G0022635) #26	Mark2 (MGP_CAROLIEiJ_G0022636) #27	Spindoc (MGP_CAROLIEiJ_G0022637) #30	Zfta (MGP_CAROLIEiJ_G0022638) #31	Rtn3 (MGP_CAROLIEiJ_G0022639) #32	Atl3 (MGP_CAROLIEiJ_G0022640) #33	Plaat3 (MGP_CAROLIEiJ_G0022641) #34	Lgals12 (MGP_CAROLIEiJ_G0022642) #35	MGP_CAROLIEiJ_G0022643 #36	Slc22a8 (MGP_CAROLIEiJ_G0022644)	Slc22a6 (MGP_CAROLIEiJ_G0022645)
Shrew mouse	MODERN SPECIES		Trmt112 (MGP_PahariEiJ_G0014109) #10	Esrra (MGP_PahariEiJ_G0014110) #11	Catsperz (MGP_PahariEiJ_G0014111) #12	Kcnk4 (MGP_PahariEiJ_G0014112) #13	Gpr137 (MGP_PahariEiJ_G0014113) #14	Bad (MGP_PahariEiJ_G0014114) #15	Plcb3 (MGP_PahariEiJ_G0014115)	MGP_PahariEiJ_G0014116	MGP_PahariEiJ_G0014117 #16	Vegfb (MGP_PahariEiJ_G0014118) #17	Dnajc4 (MGP_PahariEiJ_G0014119)	Nudt22 (MGP_PahariEiJ_G0014120)	Trpt1 (MGP_PahariEiJ_G0014121) #18	Fermt3 (MGP_PahariEiJ_G0014122) #19	Stip1 (MGP_PahariEiJ_G0014123) #20	Macrod1 (MGP_PahariEiJ_G0014124) #22	Flrt1 (MGP_PahariEiJ_G0014125) #21	Otub1 (MGP_PahariEiJ_G0014126) #23	Cox8a (MGP_PahariEiJ_G0014127) #24	Naa40 (MGP_PahariEiJ_G0014128) #25	Rcor2 (MGP_PahariEiJ_G0014129) #26	Mark2 (MGP_PahariEiJ_G0014130) #27	Spindoc (MGP_PahariEiJ_G0014131) #30	Zfta (MGP_PahariEiJ_G0014132) #31	Rtn3 (MGP_PahariEiJ_G0014133) #32	Atl3 (MGP_PahariEiJ_G0014134) #33	Plaat3 (MGP_PahariEiJ_G0014135) #34	Lgals12 (MGP_PahariEiJ_G0014136) #35	MGP_PahariEiJ_G0014137 #36	MGP_PahariEiJ_G0014138 ##37	Slc22a8 (MGP_PahariEiJ_G0014139)
Rat	MODERN SPECIES		AC098622.1 (ENSRNOG00000021123)	Prdx5 (ENSRNOG00000021125) #9	Esrra (ENSRNOG00000021139) #11	Kcnk4 (ENSRNOG00000021140) #13	Gpr137 (ENSRNOG00000021145) #14	Bad (ENSRNOG00000021147) #15	Plcb3 (ENSRNOG00000021150)	Ppp1r14b (ENSRNOG00000021151)	Fkbp2 (ENSRNOG00000021153) #16	Vegfb (ENSRNOG00000021156) #17	Dnajc4 (ENSRNOG00000043060)	Stip1 (ENSRNOG00000021164) #20	Nudt22 (ENSRNOG00000021158)	Trpt1 (ENSRNOG00000023023) #18	Fermt3 (ENSRNOG00000021161) #19	Macrod1 (ENSRNOG00000021174) #22	Flrt1 (ENSRNOG00000022428) #21	Otub1 (ENSRNOG00000021175) #23	Naa40 (ENSRNOG00000021179) #25	Hnrnpr-ps2 (ENSRNOG00000048337)	Rcor2 (ENSRNOG00000060849) #26	Mark2 (ENSRNOG00000021184) #27	Spindoc (ENSRNOG00000025061) #30	Zfta (ENSRNOG00000032042) #31	Rtn3 (ENSRNOG00000021202) #32	Atl3 (ENSRNOG00000021203) #33	ENSRNOG00000066743	Plaat3 (ENSRNOG00000021206) #34	Lgals12 (ENSRNOG00000021207) #35	Plaat5 (ENSRNOG00000023528) #36	Slc22a24 (ENSRNOG00000056396) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1053	Trmt112 (ENSNGAG00000019029) #10	Esrra (ENSNGAG00000019617) #11	Catsperz (ENSNGAG00000020348) #12	Kcnk4 (ENSNGAG00000001056) #13	Gpr137 (ENSNGAG00000013545) #14	Bad (ENSNGAG00000000616) #15	Plcb3 (ENSNGAG00000012120)	Ppp1r14b (ENSNGAG00000018980)	ENSNGAG00000015808 #16	ENSNGAG00000016435 #17	Dnajc4 (ENSNGAG00000001064)	Nudt22 (ENSNGAG00000006861)	Trpt1 (ENSNGAG00000007665) #18	Fermt3 (ENSNGAG00000009462) #19	Stip1 (ENSNGAG00000011023) #20	Macrod1 (ENSNGAG00000012417) #22	Flrt1 (ENSNGAG00000014102) #21	Otub1 (ENSNGAG00000014314) #23	Cox8a (ENSNGAG00000014530) #24
Lesser Egyptian jerboa	MODERN SPECIES	60	Esrra (ENSJJAG00000019013) #11	ENSJJAG00000023408 #12	Kcnk4 (ENSJJAG00000007714) #13	Gpr137 (ENSJJAG00000018942) #14	Bad (ENSJJAG00000021934) #15	Plcb3 (ENSJJAG00000022408)	ENSJJAG00000023732 #16	Vegfb (ENSJJAG00000005482) #17	Dnajc4 (ENSJJAG00000014463)	Nudt22 (ENSJJAG00000021699)	Trpt1 (ENSJJAG00000010855) #18	Fermt3 (ENSJJAG00000016496) #19	Stip1 (ENSJJAG00000011045) #20	ENSJJAG00000009747	Flrt1 (ENSJJAG00000010623) #21	Macrod1 (ENSJJAG00000010697) #22	Otub1 (ENSJJAG00000017403) #23	Cox8a (ENSJJAG00000022271) #24	Naa40 (ENSJJAG00000010926) #25	Rcor2 (ENSJJAG00000000799) #26	Mark2 (ENSJJAG00000018612) #27	Spindoc (ENSJJAG00000014147) #30	Zfta (ENSJJAG00000019968) #31	ENSJJAG00000016262 #32	ENSJJAG00000006253 #33	ENSJJAG00000017667	Plaat3 (ENSJJAG00000021915) #34	Lgals12 (ENSJJAG00000014881) #35	Plaat5 (ENSJJAG00000020253) #36	ENSJJAG00000010614 #37	Slc22a8 (ENSJJAG00000023072)
Kangaroo rat	MODERN SPECIES	373	Prdx5 (ENSDORG00000012325) #9	Trmt112 (ENSDORG00000012328) #10	Esrra (ENSDORG00000012329) #11	Kcnk4 (ENSDORG00000001639) #13	Gpr137 (ENSDORG00000001638) #14	Bad (ENSDORG00000001637) #15	Plcb3 (ENSDORG00000001633)	ENSDORG00000001631	ENSDORG00000001630 #16	Vegfb (ENSDORG00000001629) #17	Dnajc4 (ENSDORG00000001628)	Nudt22 (ENSDORG00000001627)	Trpt1 (ENSDORG00000001624) #18	Fermt3 (ENSDORG00000001620) #19	Stip1 (ENSDORG00000001609) #20	Macrod1 (ENSDORG00000011275) #22	Flrt1 (ENSDORG00000025890) #21	Otub1 (ENSDORG00000011273) #23	Cox8a (ENSDORG00000029070) #24	Naa40 (ENSDORG00000011271) #25	Rcor2 (ENSDORG00000012215) #26	Mark2 (ENSDORG00000012213) #27	Spindoc (ENSDORG00000007875) #30	Zfta (ENSDORG00000025999) #31	ENSDORG00000004345 #32	Atl3 (ENSDORG00000010381) #33	Plaat3 (ENSDORG00000010379) #34	Lgals12 (ENSDORG00000012907) #35	ENSDORG00000028351 #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c ##34	ENSGT00940000162878	ENSGT00940000161499 #35	ENSGT00940000162436 #36
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c.d.b ##34	ENSGT00940000162878	ENSGT00940000154853.c.c ##34
Marmotini	ANCESTRAL SPECIES	6	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c.d.b.b ##34	ENSGT00940000154853.c.c.a ##34	ENSGT00940000162878	ENSGT00940000154853.c.d.b.a.a ##34
Alpin marmot	MODERN SPECIES	3	ESRRA (ENSMMMG00000007925) #11	CATSPERZ (ENSMMMG00000007922) #12	KCNK4 (ENSMMMG00000007912) #13	GPR137 (ENSMMMG00000007790) #14	BAD (ENSMMMG00000007784) #15	PLCB3 (ENSMMMG00000007736)	PPP1R14B (ENSMMMG00000007711)	FKBP2 (ENSMMMG00000007672) #16	VEGFB (ENSMMMG00000007651) #17	DNAJC4 (ENSMMMG00000007635)	NUDT22 (ENSMMMG00000007628)	TRPT1 (ENSMMMG00000007609) #18	FERMT3 (ENSMMMG00000007580) #19	STIP1 (ENSMMMG00000007560) #20	FLRT1 (ENSMMMG00000007522) #21	MACROD1 (ENSMMMG00000007514) #22	OTUB1 (ENSMMMG00000007484) #23	COX8A (ENSMMMG00000007506) #24	NAA40 (ENSMMMG00000007472) #25	RCOR2 (ENSMMMG00000007445) #26	MARK2 (ENSMMMG00000006813) #27	SPINDOC (ENSMMMG00000006798) #30	ENSMMMG00000006783 #32	ATL3 (ENSMMMG00000006763) #33	PLAAT3 (ENSMMMG00000006751) #34	ENSMMMG00000006716 ##34	ENSMMMG00000006666 ##34	ENSMMMG00000006663	ENSMMMG00000006652 ##34	ENSMMMG00000006645	ENSMMMG00000006639 ##34
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c.d.b.a.b ##34
Squirrel	MODERN SPECIES	199	PRDX5 (ENSSTOG00000002393) #9	ESRRA (ENSSTOG00000019877) #11	TRMT112 (ENSSTOG00000019857) #10	KCNK4 (ENSSTOG00000008461) #13	GPR137 (ENSSTOG00000024794) #14	BAD (ENSSTOG00000008441) #15	PLCB3 (ENSSTOG00000008397)	PPP1R14B (ENSSTOG00000021959)	FKBP2 (ENSSTOG00000028785) #16	VEGFB (ENSSTOG00000014290) #17	DNAJC4 (ENSSTOG00000026335)	NUDT22 (ENSSTOG00000021715)	FERMT3 (ENSSTOG00000014271) #19	TRPT1 (ENSSTOG00000014285) #18	STIP1 (ENSSTOG00000014262) #20	MACROD1 (ENSSTOG00000034108) #22	FLRT1 (ENSSTOG00000019831) #21	OTUB1 (ENSSTOG00000026099) #23	COX8A (ENSSTOG00000011372) #24	NAA40 (ENSSTOG00000011363) #25	RCOR2 (ENSSTOG00000011347) #26	MARK2 (ENSSTOG00000020436) #27	SPINDOC (ENSSTOG00000008900) #30	ZFTA (ENSSTOG00000027225) #31	ENSSTOG00000000199 #32	ATL3 (ENSSTOG00000000194) #33	PLAAT3 (ENSSTOG00000022553) #34
Arctic ground squirrel	MODERN SPECIES	620	PRDX5 (ENSUPAG00010007537) #9	TRMT112 (ENSUPAG00010007547) #10	ESRRA (ENSUPAG00010007583) #11	CATSPERZ (ENSUPAG00010007594) #12	GPR137 (ENSUPAG00010007604) #14	BAD (ENSUPAG00010007644) #15	PLCB3 (ENSUPAG00010007660)	PPP1R14B (ENSUPAG00010007704)	FKBP2 (ENSUPAG00010007718) #16	VEGFB (ENSUPAG00010007726) #17	DNAJC4 (ENSUPAG00010007738)	NUDT22 (ENSUPAG00010007753)	TRPT1 (ENSUPAG00010007757) #18	FERMT3 (ENSUPAG00010007770) #19	STIP1 (ENSUPAG00010007782) #20	MACROD1 (ENSUPAG00010007872) #22	FLRT1 (ENSUPAG00010007939) #21	OTUB1 (ENSUPAG00010007945) #23	COX8A (ENSUPAG00010008008) #24	NAA40 (ENSUPAG00010008016) #25	RCOR2 (ENSUPAG00010008026) #26	MARK2 (ENSUPAG00010008066) #27	SPINDOC (ENSUPAG00010008697) #30	ZFTA (ENSUPAG00010008715) #31	RTN3 (ENSUPAG00010008723) #32	ATL3 (ENSUPAG00010008777) #33	PLAAT3 (ENSUPAG00010010461) #34	ENSUPAG00010010469 ##34
Eurasian red squirrel	MODERN SPECIES	2	CCDC88B (ENSSVLG00005016552) #8	PRDX5 (ENSSVLG00005017011) #9	ENSSVLG00005017157 #10	ESRRA (ENSSVLG00005017266) #11	KCNK4 (ENSSVLG00005017540) #13	GPR137 (ENSSVLG00005017667) #14	BAD (ENSSVLG00005018004) #15	PLCB3 (ENSSVLG00005018092)	PPP1R14B (ENSSVLG00005018431)	FKBP2 (ENSSVLG00005018547) #16	DNAJC4 (ENSSVLG00005018674)	NUDT22 (ENSSVLG00005018795)	TRPT1 (ENSSVLG00005018880) #18	FERMT3 (ENSSVLG00005019185) #19	STIP1 (ENSSVLG00005019327) #20	MACROD1 (ENSSVLG00005019517) #22	FLRT1 (ENSSVLG00005019639) #21	OTUB1 (ENSSVLG00005019708) #23	COX8A (ENSSVLG00005019802) #24	ENSSVLG00005019870 #25	ENSSVLG00005020084 #10	RCOR2 (ENSSVLG00005020151) #26	MARK2 (ENSSVLG00005020452) #27	ENSSVLG00005021665 #30	ZFTA (ENSSVLG00005021728) #31	RTN3 (ENSSVLG00005021816) #32	ATL3 (ENSSVLG00005022126) #33	PLAAT3 (ENSSVLG00005022200) #34	ENSSVLG00005022253 #35	ENSSVLG00005022359 ##34	ENSSVLG00005022391
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000160341 #11	ENSGT00400000022853 #12	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000159375 #21	ENSGT00940000161450 #22	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c ##34	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390
Naked mole-rat female	MODERN SPECIES	14	PRDX5 (ENSHGLG00000010351) #9	TRMT112 (ENSHGLG00000011130) #10	ESRRA (ENSHGLG00000011668) #11	ENSHGLG00000044117 #12	KCNK4 (ENSHGLG00000012923) #13	GPR137 (ENSHGLG00000010359) #14	BAD (ENSHGLG00000013154) #15	PPP1R14B (ENSHGLG00000041422)	FKBP2 (ENSHGLG00000037212) #16	ENSHGLG00000013921 #17	DNAJC4 (ENSHGLG00000010363)	NUDT22 (ENSHGLG00000012442)	TRPT1 (ENSHGLG00000013748) #18	STIP1 (ENSHGLG00000016796) #20	FLRT1 (ENSHGLG00000045678) #21	MACROD1 (ENSHGLG00000018799) #22	ENSHGLG00000011812 #23	COX8A (ENSHGLG00000012316) #24	NAA40 (ENSHGLG00000013175) #25	RCOR2 (ENSHGLG00000014109) #26	ENSHGLG00000011808 #27	SPINDOC (ENSHGLG00000034024) #30	ZFTA (ENSHGLG00000011849) #31	ENSHGLG00000037041 #32	ENSHGLG00000010138 #33	ENSHGLG00000033662 #34	ENSHGLG00000050757 ##34	ENSHGLG00000014812	ENSHGLG00000012161	ENSHGLG00000012322	FBP1 (ENSHGLG00000050880)
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000018173 #9	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c ##34	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211
Guinea pig	MODERN SPECIES	42	TRMT112 (ENSCPOG00000030092) #10	ESRRA (ENSCPOG00000015411) #11	KCNK4 (ENSCPOG00000025100) #13	GPR137 (ENSCPOG00000015677) #14	ENSCPOG00000005670	PLCB3 (ENSCPOG00000021694)	PPP1R14B (ENSCPOG00000002930)	FKBP2 (ENSCPOG00000002928) #16	VEGFB (ENSCPOG00000032042) #17	DNAJC4 (ENSCPOG00000040213)	NUDT22 (ENSCPOG00000032982)	TRPT1 (ENSCPOG00000002923) #18	FERMT3 (ENSCPOG00000002919) #19	STIP1 (ENSCPOG00000002914) #20	FLRT1 (ENSCPOG00000020108) #21	MACROD1 (ENSCPOG00000011720) #22	OTUB1 (ENSCPOG00000022165) #23	COX8A (ENSCPOG00000031964) #24	NAA40 (ENSCPOG00000001891) #25	RCOR2 (ENSCPOG00000004737) #26	MARK2 (ENSCPOG00000004728) #27	SPINDOC (ENSCPOG00000004724) #30	ZFTA (ENSCPOG00000033792) #31	ENSCPOG00000004811 #32	ATL3 (ENSCPOG00000003766) #33	PLAAT3 (ENSCPOG00000034238) #34	PLAAT2 (ENSCPOG00000002122) ##34	FBP2 (ENSCPOG00000001636)	AOPEP (ENSCPOG00000038711)	FANCC (ENSCPOG00000032150)	PTCH1 (ENSCPOG00000002376)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000018173 #9	ENSGT00390000009268 #10	ENSGT00940000160341 #11	ENSGT00940000160310 #13	ENSGT00940000153986.b.b #14	ENSGT00390000010740 #15	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074 #16	ENSGT00940000161844 #17	ENSGT00510000048574	ENSGT00390000017869	ENSGT00390000002731 #18	ENSGT00390000013444.a.b.b #19	ENSGT00940000154911 #20	ENSGT00940000161450 #22	ENSGT00940000159375 #21	ENSGT00390000006979.a #23	ENSGT00390000006255.b.b #24	ENSGT00390000014903 #25	ENSGT00940000154196.a #26	ENSGT00940000155031 #27	ENSGT00410000025985 #30	ENSGT00600000084617 #31	ENSGT00940000157482.d #32	ENSGT00940000158566 #33	ENSGT00940000154853.d #34	ENSGT00940000154853.c ##34	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211
Long-tailed chinchilla	MODERN SPECIES	129	PRDX5 (ENSCLAG00000017097) #9	TRMT112 (ENSCLAG00000016885) #10	ESRRA (ENSCLAG00000016837) #11	KCNK4 (ENSCLAG00000016662) #13	GPR137 (ENSCLAG00000016909) #14	BAD (ENSCLAG00000017103) #15	PLCB3 (ENSCLAG00000016775)	PPP1R14B (ENSCLAG00000016868)	FKBP2 (ENSCLAG00000017246) #16	VEGFB (ENSCLAG00000016750) #17	DNAJC4 (ENSCLAG00000016759)	NUDT22 (ENSCLAG00000016346)	FERMT3 (ENSCLAG00000016183) #19	TRPT1 (ENSCLAG00000016380) #18	STIP1 (ENSCLAG00000017164) #20	MACROD1 (ENSCLAG00000016401) #22	FLRT1 (ENSCLAG00000016935) #21	OTUB1 (ENSCLAG00000017123) #23	COX8A (ENSCLAG00000017185) #24	NAA40 (ENSCLAG00000016890) #25	RCOR2 (ENSCLAG00000017016) #26	MARK2 (ENSCLAG00000017063) #27	SPINDOC (ENSCLAG00000016329) #30	ZFTA (ENSCLAG00000016548) #31	ENSCLAG00000016800 #32	ATL3 (ENSCLAG00000016950) #33	PLAAT3 (ENSCLAG00000017157) #34	PLAAT2 (ENSCLAG00000016552) ##34	FBP2 (ENSCLAG00000016623)	FBP1 (ENSCLAG00000017181)	ENSCLAG00000016743
Degu	MODERN SPECIES	225	PRDX5 (ENSODEG00000014933) #9	ENSODEG00000016089 #10	ESRRA (ENSODEG00000015769) #11	KCNK4 (ENSODEG00000015103) #13	GPR137 (ENSODEG00000016470) #14	BAD (ENSODEG00000016677) #15	PLCB3 (ENSODEG00000015366)	PPP1R14B (ENSODEG00000015767)	FKBP2 (ENSODEG00000015505) #16	VEGFB (ENSODEG00000016602) #17	DNAJC4 (ENSODEG00000016243)	NUDT22 (ENSODEG00000015641)	TRPT1 (ENSODEG00000015724) #18	FERMT3 (ENSODEG00000015869) #19	STIP1 (ENSODEG00000015289) #20	MACROD1 (ENSODEG00000015291) #22	FLRT1 (ENSODEG00000020298) #21	ENSODEG00000015747 #23	ENSODEG00000015780 #24	NAA40 (ENSODEG00000015735) #25	RCOR2 (ENSODEG00000015765) #26	MARK2 (ENSODEG00000017191) #27	SPINDOC (ENSODEG00000015595) #30	ZFTA (ENSODEG00000015496) #31	ENSODEG00000016120 #32	ATL3 (ENSODEG00000017260) #33	PLAAT3 (ENSODEG00000015571) #34	ENSODEG00000020437	FBP2 (ENSODEG00000016600)	FBP1 (ENSODEG00000015932)	ENSODEG00000015655
Tree shrew	MODERN SPECIES	4876															STIP1 (ENSTBEG00000006569) #20	MACROD1 (ENSTBEG00000005242) #22	OTUB1 (ENSTBEG00000004225) #23	COX8A (ENSTBEG00000004032) #24	NAA40 (ENSTBEG00000003305) #25	RCOR2 (ENSTBEG00000002486) #26	ENSTBEG00000009511 #27