Euteleostomi	ANCESTRAL SPECIES		ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Sarcopterygii	ANCESTRAL SPECIES	2	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Amniota	ANCESTRAL SPECIES	2	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Mammalia	ANCESTRAL SPECIES	1	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Theria	ANCESTRAL SPECIES	6	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Primates	ANCESTRAL SPECIES	10	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b	ENSGT00390000016221
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b	ENSGT00390000016221
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b	ENSGT00390000016221
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.a #26	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a	ENSGT00530000066358
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.a #26	ENSGT00390000001538.a #28	ENSGT00940000160995.b.e.b	ENSGT00390000009472.b	ENSGT00940000163626.f.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423
Human	MODERN SPECIES	16	LDB2 (ENSG00000169744) #7	TAPT1 (ENSG00000169762) #8	PROM1 (ENSG00000007062) #9	FGFBP2 (ENSG00000137441) #10	FGFBP1 (ENSG00000137440) #11	CD38 (ENSG00000004468) #12	BST1 (ENSG00000109743) #13	FAM200B (ENSG00000237765) #14	FBXL5 (ENSG00000118564) #15	CC2D2A (ENSG00000048342) #16	C1QTNF7 (ENSG00000163145) #17	CPEB2 (ENSG00000137449) #18	BOD1L1 (ENSG00000038219) #19	NKX3-2 (ENSG00000109705) #20	RAB28 (ENSG00000157869) #21	HS3ST1 (ENSG00000002587) #22	CLNK (ENSG00000109684) #23	ZNF518B (ENSG00000178163) #24	WDR1 (ENSG00000071127) #25	DRD5 (ENSG00000169676) #26	SLC2A9 (ENSG00000109667) #27	DEFB131A (ENSG00000186146) #28	USP17L30 (ENSG00000228856) #29	USP17L29 (ENSG00000231637) #30	USP17L28 (ENSG00000231051) #31	USP17L27 (ENSG00000235780) #32	USP17L5 (ENSG00000227140) #33	USP17L26 (ENSG00000229579) #34	USP17L25 (ENSG00000230430) #35	USP17L24 (ENSG00000232264) #36	USP17L23 (ENSG00000250913) #37
Pan	ANCESTRAL SPECIES	7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.a #26	ENSGT00390000001538.a #28	ENSGT00940000160995.b.e.b	ENSGT00390000009472.b.a	ENSGT00940000163626.f.a.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00950000183001.b	ENSGT00390000000645	ENSGT00940000159423
Chimpanzee	MODERN SPECIES	17	TAPT1 (ENSPTRG00000015933) #8	PROM1 (ENSPTRG00000015932) #9	FGFBP2 (ENSPTRG00000031250) #10	FGFBP1 (ENSPTRG00000015931) #11	CD38 (ENSPTRG00000015930) #12	BST1 (ENSPTRG00000015929) #13	FAM200B (ENSPTRG00000044690) #14	FBXL5 (ENSPTRG00000015927) #15	CC2D2A (ENSPTRG00000015926) #16	C1QTNF7 (ENSPTRG00000015925) #17	CPEB2 (ENSPTRG00000015924) #18	BOD1L1 (ENSPTRG00000015922) #19	NKX3-2 (ENSPTRG00000048496) #20	RAB28 (ENSPTRG00000015920) #21	ENSPTRG00000042951	HS3ST1 (ENSPTRG00000015919) #22	ENSPTRG00000047064	ENSPTRG00000046326	CLNK (ENSPTRG00000015918) #23	ZNF518B (ENSPTRG00000044037) #24	ENSPTRG00000050777	WDR1 (ENSPTRG00000015916) #25	SLC2A9 (ENSPTRG00000015915) #27	DRD5 (ENSPTRG00000031262) #26	DEFB131A (ENSPTRG00000015911) #28	DEFB130A (ENSPTRG00000034363)	ENSPTRG00000031265	ENSPTRG00000034308	HMX1 (ENSPTRG00000042875)	CPZ (ENSPTRG00000015909)	GPR78 (ENSPTRG00000015907)
Bonobo	MODERN SPECIES	17	PROM1 (ENSPPAG00000032761) #9	FGFBP2 (ENSPPAG00000012344) #10	FGFBP1 (ENSPPAG00000023092) #11	ENSPPAG00000035131	CD38 (ENSPPAG00000036378) #12	BST1 (ENSPPAG00000034960) #13	FAM200B (ENSPPAG00000012482) #14	FBXL5 (ENSPPAG00000007317) #15	CC2D2A (ENSPPAG00000039745) #16	C1QTNF7 (ENSPPAG00000000881) #17	ENSPPAG00000009844 #18	BOD1L1 (ENSPPAG00000014926) #19	NKX3-2 (ENSPPAG00000039595) #20	RAB28 (ENSPPAG00000043705) #21	ENSPPAG00000010911	HS3ST1 (ENSPPAG00000008014) #22	CLNK (ENSPPAG00000037951) #23	ENSPPAG00000043338	WDR1 (ENSPPAG00000030082) #25	SLC2A9 (ENSPPAG00000031738) #27	DRD5 (ENSPPAG00000023786) #26	ENSPPAG00000031253	ENSPPAG00000015865	CPZ (ENSPPAG00000036243)	GPR78 (ENSPPAG00000031581)	TRMT44 (ENSPPAG00000028201)	ACOX3 (ENSPPAG00000011697)	HTRA3 (ENSPPAG00000031446)	SH3TC1 (ENSPPAG00000028783)	ABLIM2 (ENSPPAG00000034667)	AFAP1 (ENSPPAG00000002142)
Gorilla	MODERN SPECIES	17	TAPT1 (ENSGGOG00000011812) #8	PROM1 (ENSGGOG00000016139) #9	FGFBP2 (ENSGGOG00000028579) #10	FGFBP1 (ENSGGOG00000016135) #11	CD38 (ENSGGOG00000006165) #12	BST1 (ENSGGOG00000008845) #13	FAM200B (ENSGGOG00000027844) #14	FBXL5 (ENSGGOG00000010962) #15	CC2D2A (ENSGGOG00000002758) #16	C1QTNF7 (ENSGGOG00000005890) #17	CPEB2 (ENSGGOG00000004449) #18	BOD1L1 (ENSGGOG00000027616) #19	NKX3-2 (ENSGGOG00000008589) #20	RAB28 (ENSGGOG00000024190) #21	ENSGGOG00000026811	HS3ST1 (ENSGGOG00000015625) #22	ENSGGOG00000026421	CLNK (ENSGGOG00000006844) #23	ZNF518B (ENSGGOG00000040283) #24	ENSGGOG00000039866	WDR1 (ENSGGOG00000015364) #25	SLC2A9 (ENSGGOG00000015358) #27	DRD5 (ENSGGOG00000007931) #26	ENSGGOG00000039268	ENSGGOG00000022821	ENSGGOG00000036477	CPZ (ENSGGOG00000008061)	GPR78 (ENSGGOG00000008058)	TRMT44 (ENSGGOG00000008016)	ACOX3 (ENSGGOG00000008003)	HTRA3 (ENSGGOG00000005347)
Orangutan	MODERN SPECIES	17	QDPR (ENSPPYG00000014624)	LDB2 (ENSPPYG00000014623) #7	TAPT1 (ENSPPYG00000014621) #8	PROM1 (ENSPPYG00000014620) #9	FGFBP1 (ENSPPYG00000015290) #11	CD38 (ENSPPYG00000014618) #12	BST1 (ENSPPYG00000014617) #13	FAM200B (ENSPPYG00000033516) #14	FBXL5 (ENSPPYG00000014616) #15	CC2D2A (ENSPPYG00000014615) #16	C1QTNF7 (ENSPPYG00000036843) #17	CPEB2 (ENSPPYG00000014613) #18	BOD1L1 (ENSPPYG00000014612) #19	NKX3-2 (ENSPPYG00000014611) #20	RAB28 (ENSPPYG00000014610) #21	HS3ST1 (ENSPPYG00000014609) #22	CLNK (ENSPPYG00000014608) #23	ZNF518B (ENSPPYG00000014607) #24	ENSPPYG00000036401	WDR1 (ENSPPYG00000014606) #25	ENSPPYG00000032653	SLC2A9 (ENSPPYG00000014605) #27	DRD5 (ENSPPYG00000014604) #26	OTOP1 (ENSPPYG00000014603)	TMEM128 (ENSPPYG00000034463)	LYAR (ENSPPYG00000031086)	ZBTB49 (ENSPPYG00000014601)	NSG1 (ENSPPYG00000034452)	STX18 (ENSPPYG00000014598)	MSX1 (ENSPPYG00000014597)	ENSPPYG00000030828
Gibbon	MODERN SPECIES	12	TAPT1 (ENSNLEG00000016541) #8	PROM1 (ENSNLEG00000016422) #9	ENSNLEG00000027474	CD38 (ENSNLEG00000032175) #12	BST1 (ENSNLEG00000016391) #13	FAM200B (ENSNLEG00000018958) #14	FBXL5 (ENSNLEG00000016352) #15	CC2D2A (ENSNLEG00000016292) #16	C1QTNF7 (ENSNLEG00000016288) #17	ENSNLEG00000016275 #18	ENSNLEG00000030451	BOD1L1 (ENSNLEG00000016260) #19	NKX3-2 (ENSNLEG00000016256) #20	RAB28 (ENSNLEG00000016243) #21	ENSNLEG00000030301	HS3ST1 (ENSNLEG00000016241) #22	CLNK (ENSNLEG00000016205) #23	ZNF518B (ENSNLEG00000027103) #24	ENSNLEG00000031957	ENSNLEG00000031634	ENSNLEG00000016203	WDR1 (ENSNLEG00000016183) #25	SLC2A9 (ENSNLEG00000034367) #27	ENSNLEG00000029276	OTOP1 (ENSNLEG00000016176)	TMEM128 (ENSNLEG00000035157)	LYAR (ENSNLEG00000016149)	ZBTB49 (ENSNLEG00000016142)	ENSNLEG00000016136	STX18 (ENSNLEG00000016132)	MSX1 (ENSNLEG00000016128)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00390000014853.c	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b
Rhinopithecus	ANCESTRAL SPECIES	143															ENSGT00910000147172	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000159350	ENSGT00390000012901	ENSGT00910000147402	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00390000014853.c	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b	ENSGT00390000016221
Black snub-nosed monkey	MODERN SPECIES	62															ENSRBIG00000032958	HS3ST1 (ENSRBIG00000003620) #22	CLNK (ENSRBIG00000028108) #23	ZNF518B (ENSRBIG00000023435) #24	WDR1 (ENSRBIG00000000105) #25	SLC2A9 (ENSRBIG00000044385) #27	OTOP1 (ENSRBIG00000033498)	TMEM128 (ENSRBIG00000028884)	ENSRBIG00000024083
Golden snub-nosed monkey	MODERN SPECIES	3194															ENSRROG00000039492	HS3ST1 (ENSRROG00000007046) #22	CLNK (ENSRROG00000044716) #23	ZNF518B (ENSRROG00000027430) #24	WDR1 (ENSRROG00000025746) #25	SLC2A9 (ENSRROG00000038990) #27	OTOP1 (ENSRROG00000025131)	TMEM128 (ENSRROG00000036911)	ENSRROG00000032966	ENSRROG00000029166	LYAR (ENSRROG00000034394)	ZBTB49 (ENSRROG00000016491)	NSG1 (ENSRROG00000026658)	STX18 (ENSRROG00000043089)	MSX1 (ENSRROG00000040323)	ENSRROG00000036076	CYTL1 (ENSRROG00000029228)
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b	ENSGT00390000016221
Vervet Monkey	MODERN SPECIES	19	LDB2 (ENSCSAG00000016474) #7	TAPT1 (ENSCSAG00000016469) #8	PROM1 (ENSCSAG00000016436) #9	FGFBP2 (ENSCSAG00000019696) #10	FGFBP1 (ENSCSAG00000019697) #11	CD38 (ENSCSAG00000016422) #12	BST1 (ENSCSAG00000016416) #13	FAM200B (ENSCSAG00000019698) #14	FBXL5 (ENSCSAG00000016412) #15	CC2D2A (ENSCSAG00000016401) #16	C1QTNF7 (ENSCSAG00000016386) #17	CPEB2 (ENSCSAG00000016370) #18	BOD1L1 (ENSCSAG00000016349) #19	NKX3-2 (ENSCSAG00000016338) #20	RAB28 (ENSCSAG00000016331) #21	HS3ST1 (ENSCSAG00000019699) #22	CLNK (ENSCSAG00000016319) #23	ZNF518B (ENSCSAG00000019700) #24	WDR1 (ENSCSAG00000016308) #25	SLC2A9 (ENSCSAG00000016298) #27	DRD5 (ENSCSAG00000019701) #26	OTOP1 (ENSCSAG00000016285)	TMEM128 (ENSCSAG00000016276)	LYAR (ENSCSAG00000016273)	ZBTB49 (ENSCSAG00000016270)	NSG1 (ENSCSAG00000016265)	STX18 (ENSCSAG00000016261)	MSX1 (ENSCSAG00000016256)	CYTL1 (ENSCSAG00000016252)	STK32B (ENSCSAG00000016248)	EVC2 (ENSCSAG00000016225)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00910000148058	ENSGT00910000147172	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00910000147402	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000154437.mc.a.a.b.b	ENSGT00940000161623
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00910000148058	ENSGT00910000147172	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00910000147402	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000154437.mc.a.a.b.b	ENSGT00940000161623
Olive baboon	MODERN SPECIES	13	PROM1 (ENSPANG00000007794) #9	FGFBP2 (ENSPANG00000040762) #10	FGFBP1 (ENSPANG00000042480) #11	CD38 (ENSPANG00000005673) #12	BST1 (ENSPANG00000021309) #13	FBXL5 (ENSPANG00000013334) #15	CC2D2A (ENSPANG00000019572) #16	C1QTNF7 (ENSPANG00000020404) #17	CPEB2 (ENSPANG00000017542) #18	BOD1L1 (ENSPANG00000015664) #19	ENSPANG00000045576	NKX3-2 (ENSPANG00000037663) #20	RAB28 (ENSPANG00000023566) #21	ENSPANG00000043519	ENSPANG00000038839	HS3ST1 (ENSPANG00000000271) #22	CLNK (ENSPANG00000038857) #23	ZNF518B (ENSPANG00000002997) #24	WDR1 (ENSPANG00000001382) #25	SLC2A9 (ENSPANG00000032832) #27	DRD5 (ENSPANG00000050749) #26	OTOP1 (ENSPANG00000013335)	ENSPANG00000040830	TMEM128 (ENSPANG00000019220)	LYAR (ENSPANG00000021311)	ZBTB49 (ENSPANG00000015665)	ENSPANG00000044702	NSG1 (ENSPANG00000005675)	STX18 (ENSPANG00000002440)	MSX1 (ENSPANG00000046134)	ENSPANG00000035444
Cercopithecinae_d	ANCESTRAL SPECIES	91	ENSGT00940000154372.a.a #10	ENSGT00390000017291.a #12	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00910000148058	ENSGT00910000147172	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000154531.y.b.b	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00910000147402	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000154437.mc.a.a.b.b	ENSGT00940000161623
Sooty mangabey	MODERN SPECIES	551	PROM1 (ENSCATG00000035341) #9	CD38 (ENSCATG00000045367) #12	ENSCATG00000030711	BST1 (ENSCATG00000003303) #13	FAM200B (ENSCATG00000020983) #14	FBXL5 (ENSCATG00000041236) #15	CC2D2A (ENSCATG00000037758) #16	C1QTNF7 (ENSCATG00000014989) #17	CPEB2 (ENSCATG00000040126) #18	ENSCATG00000019681	BOD1L1 (ENSCATG00000040508) #19	NKX3-2 (ENSCATG00000042215) #20	RAB28 (ENSCATG00000038542) #21	ENSCATG00000013123	ENSCATG00000033901	HS3ST1 (ENSCATG00000020814) #22	CLNK (ENSCATG00000039603) #23	ZNF518B (ENSCATG00000015987) #24	ENSCATG00000031260	WDR1 (ENSCATG00000031767) #25	SLC2A9 (ENSCATG00000037675) #27	OTOP1 (ENSCATG00000037566)	TMEM128 (ENSCATG00000040757)	ENSCATG00000016643	LYAR (ENSCATG00000032402)	ZBTB49 (ENSCATG00000011176)	NSG1 (ENSCATG00000039746)	STX18 (ENSCATG00000042652)	ENSCATG00000037968	MSX1 (ENSCATG00000040142)	ENSCATG00000040924
Drill	MODERN SPECIES	963															ENSMLEG00000041457	HS3ST1 (ENSMLEG00000027482) #22	CLNK (ENSMLEG00000035924) #23	ZNF518B (ENSMLEG00000016695) #24	ENSMLEG00000035383	WDR1 (ENSMLEG00000036665) #25	SLC2A9 (ENSMLEG00000035736) #27	DRD5 (ENSMLEG00000007481) #26	OTOP1 (ENSMLEG00000033016)	TMEM128 (ENSMLEG00000043233)	ENSMLEG00000035553	ENSMLEG00000029057	LYAR (ENSMLEG00000029156)	ZBTB49 (ENSMLEG00000042466)	NSG1 (ENSMLEG00000040627)	STX18 (ENSMLEG00000030053)	ENSMLEG00000040888
Macaca	ANCESTRAL SPECIES	25	ENSGT00390000017291.a #12	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00390000012691.c.b.n	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT01020000230401.a.a.a.i.a.b	ENSGT00910000148058	ENSGT00910000147172	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00910000147402	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853.c	ENSGT00940000154437.mc.a.a.b.b	ENSGT00940000161623	ENSGT00940000153201.j.k.a.a.a.b.b.b.b
Pig-tailed macaque	MODERN SPECIES	141	ENSMNEG00000045107	BST1 (ENSMNEG00000028047) #13	FAM200B (ENSMNEG00000007314) #14	FBXL5 (ENSMNEG00000041054) #15	CC2D2A (ENSMNEG00000043856) #16	C1QTNF7 (ENSMNEG00000041355) #17	CPEB2 (ENSMNEG00000041798) #18	ENSMNEG00000029766	ENSMNEG00000006879	BOD1L1 (ENSMNEG00000037331) #19	NKX3-2 (ENSMNEG00000037382) #20	RAB28 (ENSMNEG00000028531) #21	ENSMNEG00000031439	ENSMNEG00000038062	ENSMNEG00000002182	HS3ST1 (ENSMNEG00000021861) #22	CLNK (ENSMNEG00000031084) #23	ZNF518B (ENSMNEG00000025880) #24
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00390000012691.c.b.n	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00910000148058	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00910000147402	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00950000183041.A.f	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00390000014853.c	ENSGT00940000161623
Rhesus	MODERN SPECIES	15	FGFBP2 (ENSMMUG00000008163) #10	FGFBP1 (ENSMMUG00000008162) #11	CD38 (ENSMMUG00000015298) #12	BST1 (ENSMMUG00000015294) #13	FBXL5 (ENSMMUG00000009388) #15	CC2D2A (ENSMMUG00000009383) #16	C1QTNF7 (ENSMMUG00000053853) #17	CPEB2 (ENSMMUG00000001384) #18	ENSMMUG00000059742	ENSMMUG00000051707	BOD1L1 (ENSMMUG00000022027) #19	NKX3-2 (ENSMMUG00000062096) #20	RAB28 (ENSMMUG00000022025) #21	ENSMMUG00000057905	ENSMMUG00000055223	HS3ST1 (ENSMMUG00000001341) #22	ENSMMUG00000049640	CLNK (ENSMMUG00000017762) #23	ZNF518B (ENSMMUG00000017761) #24	WDR1 (ENSMMUG00000000960) #25	SLC2A9 (ENSMMUG00000002785) #27	DRD5 (ENSMMUG00000002783) #26	OTOP1 (ENSMMUG00000002782)	TMEM128 (ENSMMUG00000023242)	LYAR (ENSMMUG00000023393)	ZBTB49 (ENSMMUG00000023394)	NSG1 (ENSMMUG00000020203)	STX18 (ENSMMUG00000020204)	ENSMMUG00000065275	MSX1 (ENSMMUG00000051198)	CYTL1 (ENSMMUG00000016921)
Crab-eating macaque	MODERN SPECIES	15	TAPT1 (ENSMFAG00000033652) #8	PROM1 (ENSMFAG00000043852) #9	FGFBP2 (ENSMFAG00000053131) #10	FGFBP1 (ENSMFAG00000056719) #11	CD38 (ENSMFAG00000034115) #12	BST1 (ENSMFAG00000043527) #13	CC2D2A (ENSMFAG00000035103) #16	FBXL5 (ENSMFAG00000043321) #15	C1QTNF7 (ENSMFAG00000025264) #17	CPEB2 (ENSMFAG00000006541) #18	ENSMFAG00000024087	BOD1L1 (ENSMFAG00000036973) #19	NKX3-2 (ENSMFAG00000061419) #20	RAB28 (ENSMFAG00000037037) #21	ENSMFAG00000063668	ENSMFAG00000034637 #22	CLNK (ENSMFAG00000046379) #23	ZNF518B (ENSMFAG00000030181) #24	WDR1 (ENSMFAG00000003069) #25	SLC2A9 (ENSMFAG00000042334) #27	DRD5 (ENSMFAG00000011075) #26	OTOP1 (ENSMFAG00000044512)	ENSMFAG00000052113	ENSMFAG00000063501	TMEM128 (ENSMFAG00000043258)	LYAR (ENSMFAG00000032542)	ZBTB49 (ENSMFAG00000043670)	ENSMFAG00000052259	NSG1 (ENSMFAG00000043521)	ENSMFAG00000040854	STX18 (ENSMFAG00000043473)
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000159563.n	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Capuchin	MODERN SPECIES	466																HS3ST1 (ENSCCAG00000031395) #22
Bolivian squirrel monkey	MODERN SPECIES	108												ENSSBOG00000020114	BOD1L1 (ENSSBOG00000028092) #19	NKX3-2 (ENSSBOG00000031285) #20	RAB28 (ENSSBOG00000023429) #21	HS3ST1 (ENSSBOG00000010089) #22	CLNK (ENSSBOG00000032245) #23	ZNF518B (ENSSBOG00000017630) #24	WDR1 (ENSSBOG00000019807) #25	SLC2A9 (ENSSBOG00000022402) #27	OTOP1 (ENSSBOG00000014731)	TMEM128 (ENSSBOG00000000856)	LYAR (ENSSBOG00000023039)	ZBTB49 (ENSSBOG00000023351)	NSG1 (ENSSBOG00000031831)	STX18 (ENSSBOG00000031642)	ENSSBOG00000024913	MSX1 (ENSSBOG00000023796)	CYTL1 (ENSSBOG00000022008)	ENSSBOG00000013315	STK32B (ENSSBOG00000032641)
Marmoset	MODERN SPECIES	15	ENSCJAG00000075835	CD38 (ENSCJAG00000012505) #12	FAM200B (ENSCJAG00000048330) #14	FBXL5 (ENSCJAG00000012393) #15	CC2D2A (ENSCJAG00000012270) #16	ENSCJAG00000071775	ENSCJAG00000085443	C1QTNF7 (ENSCJAG00000080023) #17	CPEB2 (ENSCJAG00000038767) #18	ENSCJAG00000076959	ENSCJAG00000074465	BOD1L1 (ENSCJAG00000012166) #19	NKX3-2 (ENSCJAG00000044366) #20	ENSCJAG00000072988	RAB28 (ENSCJAG00000012136) #21	HS3ST1 (ENSCJAG00000012119) #22	ENSCJAG00000075891	ENSCJAG00000067708	CLNK (ENSCJAG00000012080) #23	ENSCJAG00000080606	ZNF518B (ENSCJAG00000022790) #24	WDR1 (ENSCJAG00000011293) #25	SLC2A9 (ENSCJAG00000000103) #27	DRD5 (ENSCJAG00000000106) #26	OTOP1 (ENSCJAG00000000107)	TMEM128 (ENSCJAG00000000112)	LYAR (ENSCJAG00000000114)	ZBTB49 (ENSCJAG00000000119)	ENSCJAG00000071254	ENSCJAG00000000128	STX18 (ENSCJAG00000000139)
Mas night monkey	MODERN SPECIES	393													BOD1L1 (ENSANAG00000029733) #19	NKX3-2 (ENSANAG00000031828) #20	RAB28 (ENSANAG00000019993) #21	HS3ST1 (ENSANAG00000013265) #22	CLNK (ENSANAG00000031995) #23	ZNF518B (ENSANAG00000031612) #24
Tarsier	MODERN SPECIES	4508																HS3ST1 (ENSTSYG00000012024) #22
Strepsirrhini	ANCESTRAL SPECIES	46	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	7																ENSOGAG00000032307 #22
Bushbaby	MODERN SPECIES	245					CENPC (ENSOGAG00000008499)	EPHA5 (ENSOGAG00000004211)	TECRL (ENSOGAG00000011524)	ADGRL3 (ENSOGAG00000025090)	ENSOGAG00000032570	ENSOGAG00000013734	IGFBP7 (ENSOGAG00000016006)	POLR2B (ENSOGAG00000015999)	NOA1 (ENSOGAG00000015994)	ENSOGAG00000015986	ENSOGAG00000026534	ENSOGAG00000029069 #22
Lemuriformes	ANCESTRAL SPECIES	62	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24
Mouse lemur	MODERN SPECIES	26	TAPT1 (ENSMICG00000016984) #8	PROM1 (ENSMICG00000016967) #9	CD38 (ENSMICG00000030541) #12	ENSMICG00000036816	BST1 (ENSMICG00000016939) #13	FAM200B (ENSMICG00000033275) #14	FBXL5 (ENSMICG00000016925) #15	CC2D2A (ENSMICG00000016896) #16	C1QTNF7 (ENSMICG00000016892) #17	CPEB2 (ENSMICG00000032133) #18	ENSMICG00000035998	BOD1L1 (ENSMICG00000031531) #19	NKX3-2 (ENSMICG00000047225) #20	RAB28 (ENSMICG00000030335) #21	ENSMICG00000029248	HS3ST1 (ENSMICG00000008698) #22	CLNK (ENSMICG00000005288) #23	ZNF518B (ENSMICG00000042362) #24	ENSMICG00000043517	ENSMICG00000031201	ENSMICG00000034170	ENSMICG00000047926	WDR1 (ENSMICG00000001162) #25	ENSMICG00000032898	ENSMICG00000041585	ENSMICG00000032606	ENSMICG00000044243	ENSMICG00000045127	SOWAHC (ENSMICG00000010803)	ENSMICG00000010787	SH3RF3 (ENSMICG00000010782)
Lemuriformes_a	ANCESTRAL SPECIES	309																ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24
Greater bamboo lemur	MODERN SPECIES	370																ENSPSMG00000007955 #22	CLNK (ENSPSMG00000007999) #23	ZNF518B (ENSPSMG00000008010) #24
Coquerels sifaka	MODERN SPECIES	643																HS3ST1 (ENSPCOG00000010511) #22
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Glires	ANCESTRAL SPECIES	8	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221
Rabbit	MODERN SPECIES	11	PROM1 (ENSOCUG00000016642) #9	FGFBP2 (ENSOCUG00000016638) #10	ENSOCUG00000016623 #11	ENSOCUG00000013846 #11	FGFBP1 (ENSOCUG00000016098) #11	ENSOCUG00000017793 #12	BST1 (ENSOCUG00000002336) #13	FBXL5 (ENSOCUG00000011774) #15	CC2D2A (ENSOCUG00000011765) #16	C1QTNF7 (ENSOCUG00000016551) #17	CPEB2 (ENSOCUG00000007950) #18	ENSOCUG00000034826	BOD1L1 (ENSOCUG00000009041) #19	NKX3-2 (ENSOCUG00000009039) #20	RAB28 (ENSOCUG00000009035) #21	HS3ST1 (ENSOCUG00000007602) #22	ENSOCUG00000031363	ENSOCUG00000023327	CLNK (ENSOCUG00000003330) #23	ENSOCUG00000032810	ZNF518B (ENSOCUG00000003326) #24	WDR1 (ENSOCUG00000002549) #25	SLC2A9 (ENSOCUG00000011611) #27	DRD5 (ENSOCUG00000026757) #26	OTOP1 (ENSOCUG00000024405)	TMEM128 (ENSOCUG00000026431)	LYAR (ENSOCUG00000002386)	ZBTB49 (ENSOCUG00000007993)	ENSOCUG00000002426	STX18 (ENSOCUG00000008072)
Rodentia	ANCESTRAL SPECIES	13	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Guinea pig	MODERN SPECIES	85								FBXL5 (ENSCPOG00000010010) #15	CC2D2A (ENSCPOG00000009994) #16	C1QTNF7 (ENSCPOG00000032597) #17	CPEB2 (ENSCPOG00000001180) #18	ENSCPOG00000026963	ENSCPOG00000030559 #19	NKX3-2 (ENSCPOG00000005449) #20	RAB28 (ENSCPOG00000023938) #21	HS3ST1 (ENSCPOG00000026153) #22	ZNF518B (ENSCPOG00000026360) #24	WDR1 (ENSCPOG00000004869) #25	SLC2A9 (ENSCPOG00000004864) #27	DRD5 (ENSCPOG00000007877) #26	OTOP1 (ENSCPOG00000022370)	TMEM128 (ENSCPOG00000003922)	ENSCPOG00000003923	ZBTB49 (ENSCPOG00000007981)	NSG1 (ENSCPOG00000023088)	STX18 (ENSCPOG00000020979)	MSX1 (ENSCPOG00000037586)	CYTL1 (ENSCPOG00000008239)	STK32B (ENSCPOG00000010026)	EVC2 (ENSCPOG00000009598)	EVC (ENSCPOG00000009612)
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Degu	MODERN SPECIES	47	QDPR (ENSODEG00000009810)	LDB2 (ENSODEG00000010335) #7	TAPT1 (ENSODEG00000007601) #8	PROM1 (ENSODEG00000011756) #9	CD38 (ENSODEG00000008127) #12	BST1 (ENSODEG00000008525) #13	FBXL5 (ENSODEG00000009798) #15	CC2D2A (ENSODEG00000008363) #16	ENSODEG00000007912	C1QTNF7 (ENSODEG00000008202) #17	ENSODEG00000009313 #18	ENSODEG00000019491	BOD1L1 (ENSODEG00000009613) #19	NKX3-2 (ENSODEG00000010309) #20	ENSODEG00000008482 #21	HS3ST1 (ENSODEG00000019871) #22	WDR1 (ENSODEG00000008420) #25	ENSODEG00000010858	SLC2A9 (ENSODEG00000009108) #27	DRD5 (ENSODEG00000019688) #26	OTOP1 (ENSODEG00000009177)	TMEM128 (ENSODEG00000008766)	ENSODEG00000010523	ZBTB49 (ENSODEG00000010729)	NSG1 (ENSODEG00000009246)	STX18 (ENSODEG00000010096)	MSX1 (ENSODEG00000009346)	ENSODEG00000009744	CYTL1 (ENSODEG00000009597)	ENSODEG00000008457	STK32B (ENSODEG00000009197)
Long-tailed chinchilla	MODERN SPECIES	256																HS3ST1 (ENSCLAG00000000153) #22	CLNK (ENSCLAG00000000167) #23	ZNF518B (ENSCLAG00000017399) #24	WDR1 (ENSCLAG00000000320) #25
Naked mole-rat female	MODERN SPECIES	1	PROM1 (ENSHGLG00000006960) #9	ENSHGLG00000039232 #11	CD38 (ENSHGLG00000047314) #12	ENSHGLG00000001621	BST1 (ENSHGLG00000007923) #13	FBXL5 (ENSHGLG00000008241) #15	CC2D2A (ENSHGLG00000008572) #16	C1QTNF7 (ENSHGLG00000008916) #17	CPEB2 (ENSHGLG00000018058) #18	ENSHGLG00000045266	BOD1L1 (ENSHGLG00000018076) #19	NKX3-2 (ENSHGLG00000033026) #20	RAB28 (ENSHGLG00000048410) #21	ENSHGLG00000048028	ENSHGLG00000018894	HS3ST1 (ENSHGLG00000039231) #22	ENSHGLG00000033331	ENSHGLG00000013569	CLNK (ENSHGLG00000018872) #23	ZNF518B (ENSHGLG00000043144) #24	ENSHGLG00000037795	ENSHGLG00000045526	WDR1 (ENSHGLG00000017187) #25	SLC2A9 (ENSHGLG00000017198) #27	DRD5 (ENSHGLG00000014396) #26	ENSHGLG00000014488	ENSHGLG00000014536	LYAR (ENSHGLG00000039937)	ZBTB49 (ENSHGLG00000046826)	NSG1 (ENSHGLG00000014668)	STX18 (ENSHGLG00000004074)
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Marmotini	ANCESTRAL SPECIES	26	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Alpin marmot	MODERN SPECIES	9	LDB2 (ENSMMMG00000016572) #7	TAPT1 (ENSMMMG00000016512) #8	PROM1 (ENSMMMG00000016334) #9	FGFBP1 (ENSMMMG00000016328) #11	CD38 (ENSMMMG00000016315) #12	BST1 (ENSMMMG00000016297) #13	ENSMMMG00000016270 #15	CC2D2A (ENSMMMG00000016237) #16	C1QTNF7 (ENSMMMG00000016211) #17	ENSMMMG00000016059 #18	ENSMMMG00000016050 #19	ENSMMMG00000016045 ##19	NKX3-2 (ENSMMMG00000016036) #20	ENSMMMG00000016019	ENSMMMG00000015994	HS3ST1 (ENSMMMG00000015988) #22	CLNK (ENSMMMG00000015962) #23	ZNF518B (ENSMMMG00000015957) #24	WDR1 (ENSMMMG00000015937) #25	SLC2A9 (ENSMMMG00000015685) #27	DRD5 (ENSMMMG00000015673) #26	TMEM128 (ENSMMMG00000015670)	LYAR (ENSMMMG00000015661)	ZBTB49 (ENSMMMG00000015640)	NSG1 (ENSMMMG00000015615)	STX18 (ENSMMMG00000015577)	MSX1 (ENSMMMG00000015570)	CYTL1 (ENSMMMG00000015556)	STK32B (ENSMMMG00000015543)	EVC2 (ENSMMMG00000015516)	EVC (ENSMMMG00000015313)
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00950000183099.u.b.a.a.a.b.a	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Arctic ground squirrel	MODERN SPECIES	9	TAPT1 (ENSUPAG00010017269) #8	PROM1 (ENSUPAG00010017205) #9	FGFBP1 (ENSUPAG00010017197) #11	CD38 (ENSUPAG00010017184) #12	BST1 (ENSUPAG00010017165) #13	FBXL5 (ENSUPAG00010017123) #15	CC2D2A (ENSUPAG00010017099) #16	ENSUPAG00010017096	C1QTNF7 (ENSUPAG00010017088) #17	CPEB2 (ENSUPAG00010017042) #18	ENSUPAG00010017031 #19	ENSUPAG00010017005 #19	NKX3-2 (ENSUPAG00010016996) #20	ENSUPAG00010016979	ENSUPAG00010016971	HS3ST1 (ENSUPAG00010016961) #22	CLNK (ENSUPAG00010016897) #23	ZNF518B (ENSUPAG00010016890) #24	WDR1 (ENSUPAG00010016882) #25	SLC2A9 (ENSUPAG00010016627) #27	DRD5 (ENSUPAG00010016614) #26	OTOP1 (ENSUPAG00010016596)	TMEM128 (ENSUPAG00010016576)	LYAR (ENSUPAG00010016569)	ZBTB49 (ENSUPAG00010016556)	NSG1 (ENSUPAG00010016542)	STX18 (ENSUPAG00010016466)
Squirrel	MODERN SPECIES	77	ENSSTOG00000034519	LDB2 (ENSSTOG00000002035) #7	TAPT1 (ENSSTOG00000025519) #8	PROM1 (ENSSTOG00000020690) #9	CD38 (ENSSTOG00000005495) #12	BST1 (ENSSTOG00000023011) #13	FBXL5 (ENSSTOG00000022023) #15	CC2D2A (ENSSTOG00000005160) #16	C1QTNF7 (ENSSTOG00000011103) #17	ENSSTOG00000030843	ENSSTOG00000002388 #18	BOD1L1 (ENSSTOG00000026900) #19	NKX3-2 (ENSSTOG00000021803) #20	ENSSTOG00000004135	ENSSTOG00000021226	HS3ST1 (ENSSTOG00000005820) #22	CLNK (ENSSTOG00000014009) #23	ZNF518B (ENSSTOG00000014006) #24	WDR1 (ENSSTOG00000004366) #25	SLC2A9 (ENSSTOG00000023633) #27	DRD5 (ENSSTOG00000024357) #26	OTOP1 (ENSSTOG00000025465)	TMEM128 (ENSSTOG00000000546)	ENSSTOG00000000548	ZBTB49 (ENSSTOG00000000550)	NSG1 (ENSSTOG00000014987)	STX18 (ENSSTOG00000014992)	MSX1 (ENSSTOG00000020201)	CYTL1 (ENSSTOG00000000183)	STK32B (ENSSTOG00000004994)	EVC2 (ENSSTOG00000008460)
Eurasian red squirrel	MODERN SPECIES	18	TAPT1 (ENSSVLG00005004950) #8	ENSSVLG00005004971	PROM1 (ENSSVLG00005005100) #9	FGFBP1 (ENSSVLG00005005657) #11	CD38 (ENSSVLG00005005673) #12	BST1 (ENSSVLG00005005749) #13	FBXL5 (ENSSVLG00005005857) #15	CC2D2A (ENSSVLG00005005931) #16	C1QTNF7 (ENSSVLG00005006195) #17	CPEB2 (ENSSVLG00005006310) #18	ENSSVLG00005006750	BOD1L1 (ENSSVLG00005006882) #19	NKX3-2 (ENSSVLG00005006990) #20	RAB28 (ENSSVLG00005007038) #21	ENSSVLG00005007084	HS3ST1 (ENSSVLG00005007104) #22	ENSSVLG00005007114	CLNK (ENSSVLG00005007171) #23	ZNF518B (ENSSVLG00005007341) #24	WDR1 (ENSSVLG00005007376) #25	SLC2A9 (ENSSVLG00005007445) #27	DRD5 (ENSSVLG00005007542) #26	OTOP1 (ENSSVLG00005007557)	TMEM128 (ENSSVLG00005007596)	LYAR (ENSSVLG00005007623)	ZBTB49 (ENSSVLG00005007648)	NSG1 (ENSSVLG00005007685)	STX18 (ENSSVLG00005007739)	MSX1 (ENSSVLG00005007827)	ENSSVLG00005007871	ENSSVLG00005007931
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Kangaroo rat	MODERN SPECIES	327	Clrn2 (ENSDORG00000008037)	Qdpr (ENSDORG00000008034)	Ldb2 (ENSDORG00000010160) #7	Tapt1 (ENSDORG00000010543) #8	Prom1 (ENSDORG00000003837) #9	Fgfbp1 (ENSDORG00000003836) #11	Cd38 (ENSDORG00000028784) #12	Bst1 (ENSDORG00000008242) #13	Fbxl5 (ENSDORG00000015817) #15	Cc2d2a (ENSDORG00000010993) #16	C1qtnf7 (ENSDORG00000024922) #17	ENSDORG00000015311 #18	Bod1l (ENSDORG00000023839) #19	Nkx3-2 (ENSDORG00000011852) #20	Rab28 (ENSDORG00000012378) #21	Hs3st1 (ENSDORG00000027627) #22	ENSDORG00000028672 #23	Zfp518b (ENSDORG00000027616) #24
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Muroidea	ANCESTRAL SPECIES	17	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Prairie vole	MODERN SPECIES	88	Ldb2 (ENSMOCG00000000590) #7	ENSMOCG00000006770	ENSMOCG00000007403	Tapt1 (ENSMOCG00000018152) #8	Prom1 (ENSMOCG00000011011) #9	Fgfbp1 (ENSMOCG00000003612) #11	Cd38 (ENSMOCG00000014535) #12	Bst1 (ENSMOCG00000019455) #13	Fbxl5 (ENSMOCG00000000364) #15	Cc2d2a (ENSMOCG00000007257) #16	C1qtnf7 (ENSMOCG00000016175) #17	Cpeb2 (ENSMOCG00000004212) #18	Bod1l (ENSMOCG00000000791) #19	Nkx3-2 (ENSMOCG00000012601) #20	Rab28 (ENSMOCG00000022207) #21	Hs3st1 (ENSMOCG00000015807) #22	Clnk (ENSMOCG00000007834) #23	ENSMOCG00000003277	Zfp518b (ENSMOCG00000019708) #24	Wdr1 (ENSMOCG00000019727) #25	Slc2a9 (ENSMOCG00000010628) #27	Drd5 (ENSMOCG00000005761) #26	Otop1 (ENSMOCG00000005736)	Tmem128 (ENSMOCG00000009182)	ENSMOCG00000018827	Zbtb49 (ENSMOCG00000020948)	Nsg1 (ENSMOCG00000001080)	Stx18 (ENSMOCG00000008007)	Msx1 (ENSMOCG00000015741)	Cytl1 (ENSMOCG00000002340)	Stk32b (ENSMOCG00000002651)
Northern American deer mouse	MODERN SPECIES	1	Tapt1 (ENSPEMG00000020536) #8	ENSPEMG00000002984	Prom1 (ENSPEMG00000028234) #9	Fgfbp1 (ENSPEMG00000020951) #11	Cd38 (ENSPEMG00000023560) #12	Bst1 (ENSPEMG00000023629) #13	Fbxl5 (ENSPEMG00000012993) #15	Cc2d2a (ENSPEMG00000009644) #16	C1qtnf7 (ENSPEMG00000007887) #17	Cpeb2 (ENSPEMG00000024159) #18	ENSPEMG00000026956	Bod1l (ENSPEMG00000020794) #19	Nkx3-2 (ENSPEMG00000022326) #20	Rab28 (ENSPEMG00000023863) #21	Pin1rt1 (ENSPEMG00000001637)	Hs3st1 (ENSPEMG00000021155) #22	Clnk (ENSPEMG00000012494) #23	Zfp518b (ENSPEMG00000028357) #24	Wdr1 (ENSPEMG00000008480) #25	Slc2a9 (ENSPEMG00000018946) #27	Drd5 (ENSPEMG00000006329) #26	Otop1 (ENSPEMG00000017345)	Tmem128 (ENSPEMG00000010738)	Lyar (ENSPEMG00000006969)	Zbtb49 (ENSPEMG00000014043)	Nsg1 (ENSPEMG00000015199)	Stx18 (ENSPEMG00000015723)	Msx1 (ENSPEMG00000030584)	Cytl1 (ENSPEMG00000014901)	Stk32b (ENSPEMG00000017412)	Evc2 (ENSPEMG00000014872)
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Golden Hamster	MODERN SPECIES	632	ENSMAUG00000013013	Ldb2 (ENSMAUG00000019898) #7	Tapt1 (ENSMAUG00000020047) #8	Prom1 (ENSMAUG00000021517) #9	ENSMAUG00000008674	Fgfbp1 (ENSMAUG00000021288) #11	Cd38 (ENSMAUG00000010213) #12	Bst1 (ENSMAUG00000009435) #13	Fbxl5 (ENSMAUG00000021433) #15	Cc2d2a (ENSMAUG00000009103) #16	C1qtnf7 (ENSMAUG00000014427) #17	Cpeb2 (ENSMAUG00000012556) #18	Bod1l (ENSMAUG00000005686) #19	Nkx3-2 (ENSMAUG00000021195) #20	Rab28 (ENSMAUG00000008404) #21	Hs3st1 (ENSMAUG00000010930) #22	Clnk (ENSMAUG00000011387) #23	Zfp518b (ENSMAUG00000018410) #24	Wdr1 (ENSMAUG00000008741) #25	Slc2a9 (ENSMAUG00000017473) #27	Drd5 (ENSMAUG00000008775) #26	Otop1 (ENSMAUG00000011594)	ENSMAUG00000014456	ENSMAUG00000021998	Zbtb49 (ENSMAUG00000018552)	Nsg1 (ENSMAUG00000020630)	Stx18 (ENSMAUG00000002981)	Msx1 (ENSMAUG00000010574)	Cytl1 (ENSMAUG00000013788)	Stk32b (ENSMAUG00000010264)	Evc2 (ENSMAUG00000014715)
Chinese hamster chok1gshd	MODERN SPECIES	44	ENSCGRG00001017411	Tapt1 (ENSCGRG00001012440) #8	ENSCGRG00001007353	Prom1 (ENSCGRG00001016969) #9	Fgfbp1 (ENSCGRG00001010728) #11	Cd38 (ENSCGRG00001002421) #12	Bst1 (ENSCGRG00001017887) #13	Fbxl5 (ENSCGRG00001012142) #15	Cc2d2a (ENSCGRG00001024057) #16	C1qtnf7 (ENSCGRG00001018371) #17	Cpeb2 (ENSCGRG00001011001) #18	ENSCGRG00001022278	Bod1l (ENSCGRG00001016786) #19	Nkx3-2 (ENSCGRG00001003722) #20	ENSCGRG00001022149	Hs3st1 (ENSCGRG00001007971) #22	Clnk (ENSCGRG00001012221) #23	Zfp518b (ENSCGRG00001009202) #24	ENSCGRG00001021703	Wdr1 (ENSCGRG00001013724) #25	Slc2a9 (ENSCGRG00001022915) #27	Drd5 (ENSCGRG00001000668) #26	Otop1 (ENSCGRG00001016492)	Tmem128 (ENSCGRG00001013920)	Lyar (ENSCGRG00001012784)	Zbtb49 (ENSCGRG00001001097)	Nsg1 (ENSCGRG00001012496)	Stx18 (ENSCGRG00001004947)	Msx1 (ENSCGRG00001022584)	Cytl1 (ENSCGRG00001022429)	Stk32b (ENSCGRG00001017745)
Murinae	ANCESTRAL SPECIES	12	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Mus	ANCESTRAL SPECIES	14	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Mus_A	ANCESTRAL SPECIES	6	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Mus_B	ANCESTRAL SPECIES	4	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Mouse	MODERN SPECIES	14	Qdpr (ENSMUSG00000015806)	Ldb2 (ENSMUSG00000039706) #7	Tapt1 (ENSMUSG00000046985) #8	Prom1 (ENSMUSG00000029086) #9	Fgfbp1 (ENSMUSG00000048373) #11	Ppihl (ENSMUSG00000033036)	Cd38 (ENSMUSG00000029084) #12	Bst1 (ENSMUSG00000029082) #13	Fbxl5 (ENSMUSG00000039753) #15	Cc2d2a (ENSMUSG00000039765) #16	C1qtnf7 (ENSMUSG00000061535) #17	Cpeb2 (ENSMUSG00000039782) #18	Bod1l (ENSMUSG00000061755) #19	Nkx3-2 (ENSMUSG00000049691) #20	Rab28 (ENSMUSG00000029128) #21	Hs3st1 (ENSMUSG00000051022) #22	Clnk (ENSMUSG00000039315) #23	Zfp518b (ENSMUSG00000046572) #24	Wdr1 (ENSMUSG00000005103) #25	Slc2a9 (ENSMUSG00000005107) #27	Drd5 (ENSMUSG00000039358) #26	Otop1 (ENSMUSG00000051596)	Tmem128 (ENSMUSG00000067365)	Lyar (ENSMUSG00000067367)	Zbtb49 (ENSMUSG00000029127)	Nsg1 (ENSMUSG00000029126)	Stx18 (ENSMUSG00000029125)	Msx1 (ENSMUSG00000048450)	Cytl1 (ENSMUSG00000062329)	Stk32b (ENSMUSG00000029123)	Evc2 (ENSMUSG00000050248)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Steppe mouse	MODERN SPECIES	2397																Hs3st1 (ENSMSIG00000030013) #22
spretus	MODERN SPECIES	14	Qdpr (MGP_SPRETEiJ_G0028197)	Ldb2 (MGP_SPRETEiJ_G0028196) #7	Tapt1 (MGP_SPRETEiJ_G0028195) #8	Prom1 (MGP_SPRETEiJ_G0028194) #9	Fgfbp1 (MGP_SPRETEiJ_G0028193) #11	Cd38 (MGP_SPRETEiJ_G0028192) #12	Bst1 (MGP_SPRETEiJ_G0028191) #13	Fbxl5 (MGP_SPRETEiJ_G0028190) #15	Cc2d2a (MGP_SPRETEiJ_G0028189) #16	C1qtnf7 (MGP_SPRETEiJ_G0028188) #17	Cpeb2 (MGP_SPRETEiJ_G0028187) #18	MGP_SPRETEiJ_G0028186	Bod1l (MGP_SPRETEiJ_G0028185) #19	Nkx3-2 (MGP_SPRETEiJ_G0028184) #20	Rab28 (MGP_SPRETEiJ_G0028183) #21	Hs3st1 (MGP_SPRETEiJ_G0028182) #22	Clnk (MGP_SPRETEiJ_G0028181) #23	Zfp518b (MGP_SPRETEiJ_G0028180) #24	Wdr1 (MGP_SPRETEiJ_G0028179) #25	Slc2a9 (MGP_SPRETEiJ_G0028178) #27	Drd5 (MGP_SPRETEiJ_G0028177) #26	Otop1 (MGP_SPRETEiJ_G0028176)	Tmem128 (MGP_SPRETEiJ_G0028175)	Lyar (MGP_SPRETEiJ_G0028174)	Zbtb49 (MGP_SPRETEiJ_G0028173)	Nsg1 (MGP_SPRETEiJ_G0028172)	Stx18 (MGP_SPRETEiJ_G0028171)	Msx1 (MGP_SPRETEiJ_G0028170)	MGP_SPRETEiJ_G0028169	Cytl1 (MGP_SPRETEiJ_G0028168)	Stk32b (MGP_SPRETEiJ_G0028167)
Ryukyu mouse	MODERN SPECIES	14	Ldb2 (MGP_CAROLIEiJ_G0027200) #7	Tapt1 (MGP_CAROLIEiJ_G0027199) #8	Prom1 (MGP_CAROLIEiJ_G0027198) #9	Fgfbp1 (MGP_CAROLIEiJ_G0027197) #11	Cd38 (MGP_CAROLIEiJ_G0027196) #12	Bst1 (MGP_CAROLIEiJ_G0027195) #13	Fbxl5 (MGP_CAROLIEiJ_G0027194) #15	Cc2d2a (MGP_CAROLIEiJ_G0027193) #16	C1qtnf7 (MGP_CAROLIEiJ_G0027192) #17	Cpeb2 (MGP_CAROLIEiJ_G0027191) #18	MGP_CAROLIEiJ_G0027190	MGP_CAROLIEiJ_G0027189	Bod1l (MGP_CAROLIEiJ_G0027188) #19	Nkx3-2 (MGP_CAROLIEiJ_G0027187) #20	Rab28 (MGP_CAROLIEiJ_G0027186) #21	Hs3st1 (MGP_CAROLIEiJ_G0027185) #22	Clnk (MGP_CAROLIEiJ_G0027184) #23	Zfp518b (MGP_CAROLIEiJ_G0027183) #24	Wdr1 (MGP_CAROLIEiJ_G0027182) #25	Slc2a9 (MGP_CAROLIEiJ_G0027181) #27	Drd5 (MGP_CAROLIEiJ_G0027180) #26	Otop1 (MGP_CAROLIEiJ_G0027179)	Tmem128 (MGP_CAROLIEiJ_G0027178)	Lyar (MGP_CAROLIEiJ_G0027177)	Zbtb49 (MGP_CAROLIEiJ_G0027176)	Nsg1 (MGP_CAROLIEiJ_G0027175)	Stx18 (MGP_CAROLIEiJ_G0027174)	Msx1 (MGP_CAROLIEiJ_G0027173)	Cytl1 (MGP_CAROLIEiJ_G0027172)	Stk32b (MGP_CAROLIEiJ_G0027171)	Evc2 (MGP_CAROLIEiJ_G0027170)
Shrew mouse	MODERN SPECIES	4	Clrn2 (MGP_PahariEiJ_G0016984)	Qdpr (MGP_PahariEiJ_G0016983)	Ldb2 (MGP_PahariEiJ_G0016982) #7	Tapt1 (MGP_PahariEiJ_G0016981) #8	Prom1 (MGP_PahariEiJ_G0016980) #9	Fgfbp1 (MGP_PahariEiJ_G0016979) #11	Cd38 (MGP_PahariEiJ_G0016978) #12	Bst1 (MGP_PahariEiJ_G0016977) #13	Fbxl5 (MGP_PahariEiJ_G0016976) #15	Cc2d2a (MGP_PahariEiJ_G0016975) #16	C1qtnf7 (MGP_PahariEiJ_G0016974) #17	Cpeb2 (MGP_PahariEiJ_G0016973) #18	Bod1l (MGP_PahariEiJ_G0016972) #19	Nkx3-2 (MGP_PahariEiJ_G0016971) #20	Rab28 (MGP_PahariEiJ_G0016970) #21	Hs3st1 (MGP_PahariEiJ_G0016969) #22	Clnk (MGP_PahariEiJ_G0016968) #23	Zfp518b (MGP_PahariEiJ_G0016967) #24	Wdr1 (MGP_PahariEiJ_G0016966) #25	Slc2a9 (MGP_PahariEiJ_G0016965) #27	Drd5 (MGP_PahariEiJ_G0016964) #26	Otop1 (MGP_PahariEiJ_G0016963)	Tmem128 (MGP_PahariEiJ_G0016962)	Lyar (MGP_PahariEiJ_G0016961)	Zbtb49 (MGP_PahariEiJ_G0016960)	Nsg1 (MGP_PahariEiJ_G0016959)	Stx18 (MGP_PahariEiJ_G0016958)	Msx1 (MGP_PahariEiJ_G0016957)	Cytl1 (MGP_PahariEiJ_G0016956)	Stk32b (MGP_PahariEiJ_G0016955)	Evc2 (MGP_PahariEiJ_G0016954)
Rat	MODERN SPECIES	5	Apex2l1 (ENSRNOG00000026046)	Cd38 (ENSRNOG00000003069) #12	Bst1 (ENSRNOG00000003064) #13	Fbxl5 (ENSRNOG00000005261) #15	Cc2d2a (ENSRNOG00000059715) #16	C1qtnf7 (ENSRNOG00000005094) #17	Isca2-ps1 (ENSRNOG00000005077)	Cpeb2 (ENSRNOG00000005043) #18	Rab5al1 (ENSRNOG00000062595)	Rps11-ps1 (ENSRNOG00000064268)	RGD1561694 (ENSRNOG00000029107)	Bod1l1 (ENSRNOG00000050437) #19	Nkx3-2 (ENSRNOG00000060782) #20	Rab28 (ENSRNOG00000017074) #21	AABR07015759.1 (ENSRNOG00000033640)	Hs3st1 (ENSRNOG00000068537) #22	Clnk (ENSRNOG00000051169) #23	Zfp518b (ENSRNOG00000028534) #24	Wdr1 (ENSRNOG00000028498) #25	Slc2a9 (ENSRNOG00000005302) #27	Drd5 (ENSRNOG00000005338) #26	Otop1 (ENSRNOG00000028423)	Tmem128 (ENSRNOG00000005346)	Lyar (ENSRNOG00000005374)	Zbtb49 (ENSRNOG00000005633)	Nsg1 (ENSRNOG00000005700)	Stx18 (ENSRNOG00000006139)	Cytl1 (ENSRNOG00000028108)	Stk32b (ENSRNOG00000031397)	Evc2 (ENSRNOG00000007025)	Evc (ENSRNOG00000007564)
Upper Galilee mountains blind mole rat	MODERN SPECIES	529	Clrn2 (ENSNGAG00000016449)	Qdpr (ENSNGAG00000017620)	Ldb2 (ENSNGAG00000020132) #7	Tapt1 (ENSNGAG00000004565) #8	Prom1 (ENSNGAG00000018206) #9	Fgfbp1 (ENSNGAG00000017313) #11	Cd38 (ENSNGAG00000017880) #12	ENSNGAG00000019781 #13	ENSNGAG00000020377 #15	Cc2d2a (ENSNGAG00000005275) #16	C1qtnf7 (ENSNGAG00000021499) #17	ENSNGAG00000010275 #18	ENSNGAG00000014506 #19	Nkx3-2 (ENSNGAG00000015309) #20	ENSNGAG00000017509	Hs3st1 (ENSNGAG00000019119) #22	ENSNGAG00000019918
Lesser Egyptian jerboa	MODERN SPECIES	178														ENSJJAG00000000099	ENSJJAG00000001096	Hs3st1 (ENSJJAG00000012681) #22	Wdr1 (ENSJJAG00000004749) #25	Slc2a9 (ENSJJAG00000012420) #27	Bloc1s3 (ENSJJAG00000012549)	ENSJJAG00000015540	ENSJJAG00000016417	ENSJJAG00000016582	Ppp2r2c (ENSJJAG00000016987)	Wfs1 (ENSJJAG00000018904)	Otop1 (ENSJJAG00000019947)	Tmem128 (ENSJJAG00000014554)	ENSJJAG00000014925	ENSJJAG00000015468	ENSJJAG00000016460	Nsg1 (ENSJJAG00000016805)	Stx18 (ENSJJAG00000017854)
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160449 #22
Hedgehog	MODERN SPECIES	13228																HS3ST1 (ENSEEUG00000005387) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Carnivora	ANCESTRAL SPECIES	5	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Caniformia	ANCESTRAL SPECIES	7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Ursidae	ANCESTRAL SPECIES	29	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.t	ENSGT00940000172520	ENSGT00940000158750.s	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490
Ursus	ANCESTRAL SPECIES																	ENSGT00940000160449 #22
American black bear	MODERN SPECIES	4269																HS3ST1 (ENSUAMG00000000659) #22
Giant Panda	MODERN SPECIES	2	LDB2 (ENSAMEG00000001733) #7	TAPT1 (ENSAMEG00000001715) #8	PROM1 (ENSAMEG00000001591) #9	FGFBP1 (ENSAMEG00000001588) #11	CD38 (ENSAMEG00000001557) #12	BST1 (ENSAMEG00000001548) #13	FAM200B (ENSAMEG00000029254) #14	FBXL5 (ENSAMEG00000001527) #15	CC2D2A (ENSAMEG00000001507) #16	C1QTNF7 (ENSAMEG00000029350) #17	CPEB2 (ENSAMEG00000001477) #18	BOD1L1 (ENSAMEG00000009321) #19	NKX3-2 (ENSAMEG00000031124) #20	RAB28 (ENSAMEG00000025605) #21	ENSAMEG00000023519	ENSAMEG00000024188 #22	ENSAMEG00000013641 #27	ENSAMEG00000019428 #26	ENSAMEG00000013648	ENSAMEG00000013656	ENSAMEG00000013658	ZBTB49 (ENSAMEG00000013670)	NSG1 (ENSAMEG00000013679)	STX18 (ENSAMEG00000013685)	MSX1 (ENSAMEG00000023843)	CYTL1 (ENSAMEG00000027051)	STK32B (ENSAMEG00000011168)	EVC2 (ENSAMEG00000011143)	EVC (ENSAMEG00000011133)	CRMP1 (ENSAMEG00000011012)	ENSAMEG00000023744
Mustelinae	ANCESTRAL SPECIES	69															ENSGT00940000165003	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
American mink	MODERN SPECIES	254						ABL2 (ENSNVIG00000007227)	TOR3A (ENSNVIG00000007358)	FAM20B (ENSNVIG00000007364)	RALGPS2 (ENSNVIG00000007387)	ANGPTL1 (ENSNVIG00000007471)	TEX35 (ENSNVIG00000007495)	CLEC20A (ENSNVIG00000007515)	RASAL2 (ENSNVIG00000007540)	ENSNVIG00000007648	ENSNVIG00000007664	HS3ST1 (ENSNVIG00000007678) #22	CLNK (ENSNVIG00000007693) #23	ZNF518B (ENSNVIG00000007726) #24	WDR1 (ENSNVIG00000007748) #25	SLC2A9 (ENSNVIG00000007833) #27	DRD5 (ENSNVIG00000007857) #26	OTOP1 (ENSNVIG00000007865)	D3DVS1 (ENSNVIG00000007875)	LYAR (ENSNVIG00000007924)	ZBTB49 (ENSNVIG00000007937)	NSG1 (ENSNVIG00000007969)	STX18 (ENSNVIG00000007980)	MSX1 (ENSNVIG00000008066)	CYTL1 (ENSNVIG00000008086)
Ferret	MODERN SPECIES	317															ENSMPUG00000008086	HS3ST1 (ENSMPUG00000019805) #22	ENSMPUG00000008079	CLNK (ENSMPUG00000008065) #23	ZNF518B (ENSMPUG00000019802) #24	WDR1 (ENSMPUG00000008049) #25	SLC2A9 (ENSMPUG00000008036) #27	DRD5 (ENSMPUG00000019800) #26	OTOP1 (ENSMPUG00000008008)	TMEM128 (ENSMPUG00000007977)	LYAR (ENSMPUG00000007967)	ENSMPUG00000007961	NSG1 (ENSMPUG00000007955)	STX18 (ENSMPUG00000007952)	MSX1 (ENSMPUG00000007949)	ENSMPUG00000007945	CYTL1 (ENSMPUG00000007935)
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833.i.a #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.m	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000166876	ENSGT00940000161833.j #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.m	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Dog	MODERN SPECIES	22	PROM1 (ENSCAFG00845000922) #9	ENSCAFG00845001269 #11	FGFBP1 (ENSCAFG00845001279) #11	CD38 (ENSCAFG00845001294) #12	FAM200B (ENSCAFG00845001332) #14	BST1 (ENSCAFG00845001361) #13	FBXL5 (ENSCAFG00845001403) #15	CC2D2A (ENSCAFG00845001505) #16	ENSCAFG00845001714	C1QTNF7 (ENSCAFG00845001735) #17	CPEB2 (ENSCAFG00845001961) #18	BOD1L1 (ENSCAFG00845002214) #19	NKX3-2 (ENSCAFG00845002262) #20	RAB28 (ENSCAFG00845002304) #21	ENSCAFG00845002350	HS3ST1 (ENSCAFG00845002386) #22	CLNK (ENSCAFG00845002462) #23	ZNF518B (ENSCAFG00845002667) #24	WDR1 (ENSCAFG00845002747) #25	SLC2A9 (ENSCAFG00845002932) #27	DRD5 (ENSCAFG00845002993) #26	ENSCAFG00845003003	TMEM128 (ENSCAFG00845003026)	LYAR (ENSCAFG00845003057)	ZBTB49 (ENSCAFG00845003093)	ENSCAFG00845003138	STX18 (ENSCAFG00845003190)	MSX1 (ENSCAFG00845003246)	CYTL1 (ENSCAFG00845003262)	STK32B (ENSCAFG00845003289)	EVC2 (ENSCAFG00845003407)
Dingo	MODERN SPECIES	138	FGFBP1 (ENSCAFG00020011576) #11	CD38 (ENSCAFG00020011563) #12	BST1 (ENSCAFG00020011559) #13	FAM200B (ENSCAFG00020011557) #14	FBXL5 (ENSCAFG00020011555) #15	ENSCAFG00020011553	CC2D2A (ENSCAFG00020011458) #16	C1QTNF7 (ENSCAFG00020011417) #17	CPEB2 (ENSCAFG00020011244) #18	ENSCAFG00020011215 #19	ENSCAFG00020011204 ##19	NKX3-2 (ENSCAFG00020011200) #20	ENSCAFG00020011176	ENSCAFG00020011172	ENSCAFG00020011159 #21	HS3ST1 (ENSCAFG00020011147) #22	ZNF518B (ENSCAFG00020011145) #24	WDR1 (ENSCAFG00020011126) #25	SLC2A9 (ENSCAFG00020011024) #27	DRD5 (ENSCAFG00020010961) #26	OTOP1 (ENSCAFG00020010949)	TMEM128 (ENSCAFG00020010942)	ENSCAFG00020010924	ZBTB49 (ENSCAFG00020010909)	NSG1 (ENSCAFG00020010902)	STX18 (ENSCAFG00020010892)	MSX1 (ENSCAFG00020010870)	CYTL1 (ENSCAFG00020010843)	STK32B (ENSCAFG00020010802)	EVC2 (ENSCAFG00020010756)	EVC (ENSCAFG00020010744)
Red fox	MODERN SPECIES	1	TAPT1 (ENSVVUG00000015407) #8	PROM1 (ENSVVUG00000015384) #9	ENSVVUG00000015374 #11	FGFBP1 (ENSVVUG00000015372) #11	CD38 (ENSVVUG00000015370) #12	BST1 (ENSVVUG00000015350) #13	FAM200B (ENSVVUG00000015346) #14	FBXL5 (ENSVVUG00000015338) #15	CC2D2A (ENSVVUG00000015328) #16	C1QTNF7 (ENSVVUG00000015317) #17	ENSVVUG00000015311	CPEB2 (ENSVVUG00000015140) #18	BOD1L1 (ENSVVUG00000015114) #19	NKX3-2 (ENSVVUG00000015109) #20	RAB28 (ENSVVUG00000015102) #21	HS3ST1 (ENSVVUG00000015066) #22	CLNK (ENSVVUG00000015046) #23	ZNF518B (ENSVVUG00000015045) #24	WDR1 (ENSVVUG00000015035) #25	SLC2A9 (ENSVVUG00000015019) #27	DRD5 (ENSVVUG00000015003) #26	OTOP1 (ENSVVUG00000014999)	TMEM128 (ENSVVUG00000014987)	ENSVVUG00000014976	ZBTB49 (ENSVVUG00000014967)	NSG1 (ENSVVUG00000014965)	STX18 (ENSVVUG00000014947)	MSX1 (ENSVVUG00000014929)	ENSVVUG00000014927	CYTL1 (ENSVVUG00000014924)	STK32B (ENSVVUG00000014916)
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000167616	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000167616	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000167616.f	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490
lion	MODERN SPECIES	4	ENSPLOG00000019558	TAPT1 (ENSPLOG00000019592) #8	PROM1 (ENSPLOG00000019624) #9	FGFBP1 (ENSPLOG00000019894) #11	CD38 (ENSPLOG00000019968) #12	ENSPLOG00000000109	BST1 (ENSPLOG00000000121) #13	FAM200B (ENSPLOG00000000149) #14	FBXL5 (ENSPLOG00000000191) #15	CC2D2A (ENSPLOG00000000281) #16	C1QTNF7 (ENSPLOG00000000338) #17	CPEB2 (ENSPLOG00000000382) #18	BOD1L1 (ENSPLOG00000000511) #19	NKX3-2 (ENSPLOG00000000588) #20	RAB28 (ENSPLOG00000000656) #21	HS3ST1 (ENSPLOG00000000719) #22	CLNK (ENSPLOG00000000755) #23	ZNF518B (ENSPLOG00000000802) #24	WDR1 (ENSPLOG00000000822) #25	SLC2A9 (ENSPLOG00000000857) #27	DRD5 (ENSPLOG00000000883) #26	OTOP1 (ENSPLOG00000000903)	TMEM128 (ENSPLOG00000000938)	LYAR (ENSPLOG00000000968)	ZBTB49 (ENSPLOG00000000997)	NSG1 (ENSPLOG00000001025)	STX18 (ENSPLOG00000001060)	ENSPLOG00000001090	MSX1 (ENSPLOG00000001106)	CYTL1 (ENSPLOG00000001119)	STK32B (ENSPLOG00000001160)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Equus	ANCESTRAL SPECIES	12	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b.k.b #11	ENSGT00940000154372.a.b.l #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Donkey	MODERN SPECIES	22	TAPT1 (ENSEASG00005005544) #8	PROM1 (ENSEASG00005005511) #9	ENSEASG00005005478 #11	ENSEASG00005027907 #11	ENSEASG00005024358 #11	CD38 (ENSEASG00005005470) #12	BST1 (ENSEASG00005005466) #13	FAM200B (ENSEASG00005005463) #14	FBXL5 (ENSEASG00005005458) #15	CC2D2A (ENSEASG00005005427) #16	C1QTNF7 (ENSEASG00005037275) #17	CPEB2 (ENSEASG00005005397) #18	ENSEASG00005005384	NKX3-2 (ENSEASG00005005373) #20	RAB28 (ENSEASG00005005367) #21	HS3ST1 (ENSEASG00005034742) #22	CLNK (ENSEASG00005005344) #23	ZNF518B (ENSEASG00005031891) #24	WDR1 (ENSEASG00005005322) #25	SLC2A9 (ENSEASG00005005316) #27	DRD5 (ENSEASG00005005315) #26	ENSEASG00005005313	ENSEASG00005005312	LYAR (ENSEASG00005005311)	ZBTB49 (ENSEASG00005005309)	NSG1 (ENSEASG00005023804)	STX18 (ENSEASG00005005299)	MSX1 (ENSEASG00005005296)	ENSEASG00005037071	STK32B (ENSEASG00005005283)	EVC2 (ENSEASG00005005274)
Horse	MODERN SPECIES	22	TAPT1 (ENSECAG00000011326) #8	PROM1 (ENSECAG00000013323) #9	ENSECAG00000051073 #11	ENSECAG00000034729 #11	FGFBP1 (ENSECAG00000040039) #11	CD38 (ENSECAG00000020720) #12	BST1 (ENSECAG00000023398) #13	FAM200B (ENSECAG00000024279) #14	FBXL5 (ENSECAG00000024327) #15	CC2D2A (ENSECAG00000025115) #16	C1QTNF7 (ENSECAG00000007989) #17	CPEB2 (ENSECAG00000008722) #18	BOD1L1 (ENSECAG00000010410) #19	NKX3-2 (ENSECAG00000027948) #20	RAB28 (ENSECAG00000013994)	HS3ST1 (ENSECAG00000002570) #22	CLNK (ENSECAG00000014775) #23	ZNF518B (ENSECAG00000036840) #24	WDR1 (ENSECAG00000018435) #25	SLC2A9 (ENSECAG00000004240) #27	DRD5 (ENSECAG00000008988) #26	OTOP1 (ENSECAG00000010393)	TMEM128 (ENSECAG00000012014)	LYAR (ENSECAG00000012794)	ZBTB49 (ENSECAG00000013694)	ENSECAG00000050935	NSG1 (ENSECAG00000015566)	STX18 (ENSECAG00000015983)	MSX1 (ENSECAG00000020619)	CYTL1 (ENSECAG00000020830)	STK32B (ENSECAG00000021668)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Megabat	MODERN SPECIES	6767																HS3ST1 (ENSPVAG00000009234) #22
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Greater horseshoe bat	MODERN SPECIES	23	TAPT1 (ENSRFEG00010003332) #8	PROM1 (ENSRFEG00010003394) #9	ENSRFEG00010003476 #11	ENSRFEG00010003491 #12	ENSRFEG00010003526 #12	BST1 (ENSRFEG00010003563) #13	FAM200B (ENSRFEG00010003587) #14	FBXL5 (ENSRFEG00010003620) #15	CC2D2A (ENSRFEG00010003727) #16	C1QTNF7 (ENSRFEG00010003876) #17	ENSRFEG00010003895	CPEB2 (ENSRFEG00010003962) #18	BOD1L1 (ENSRFEG00010004157) #19	NKX3-2 (ENSRFEG00010004199) #20	ENSRFEG00010004231	HS3ST1 (ENSRFEG00010004266) #22	CLNK (ENSRFEG00010004296) #23	ZNF518B (ENSRFEG00010004354) #24	WDR1 (ENSRFEG00010004366) #25	SLC2A9 (ENSRFEG00010004406) #27	DRD5 (ENSRFEG00010004433) #26	OTOP1 (ENSRFEG00010004447)	TMEM128 (ENSRFEG00010004467)	LYAR (ENSRFEG00010004484)	ZBTB49 (ENSRFEG00010004501)	NSG1 (ENSRFEG00010004523)	STX18 (ENSRFEG00010004547)	MSX1 (ENSRFEG00010004558)	CYTL1 (ENSRFEG00010004572)	STK32B (ENSRFEG00010004594)	EVC2 (ENSRFEG00010004635)
Microbat	MODERN SPECIES	1120											CPEB2 (ENSMLUG00000000894) #18	ENSMLUG00000022984	BOD1L1 (ENSMLUG00000026260) #19	NKX3-2 (ENSMLUG00000008362) #20	RAB28 (ENSMLUG00000013325) #21	HS3ST1 (ENSMLUG00000006666) #22
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Suina	ANCESTRAL SPECIES	33	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00990000209835	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Chacoan peccary	MODERN SPECIES	960	ENSCWAG00000020764	ENSCWAG00000020746 #9	FGFBP1 (ENSCWAG00000020734) #11	CD38 (ENSCWAG00000020715) #12	BST1 (ENSCWAG00000020680) #13	FAM200B (ENSCWAG00000020666) #14	FBXL5 (ENSCWAG00000020634) #15	CC2D2A (ENSCWAG00000020548) #16	C1QTNF7 (ENSCWAG00000020530) #17	CPEB2 (ENSCWAG00000019950) #18	ENSCWAG00000019903 #19	ENSCWAG00000019897 #19	NKX3-2 (ENSCWAG00000019886) #20	ENSCWAG00000019854	ENSCWAG00000019830	HS3ST1 (ENSCWAG00000019822) #22	ENSCWAG00000019795 #23	ENSCWAG00000019770 #23	ZNF518B (ENSCWAG00000019758) #24
Pig	MODERN SPECIES	16	TAPT1 (ENSSSCG00000021828) #8	PROM1 (ENSSSCG00000008745) #9	FGFBP1 (ENSSSCG00000008741) #11	CD38 (ENSSSCG00000008742) #12	BST1 (ENSSSCG00000028359) #13	ENSSSCG00000060364	FBXL5 (ENSSSCG00000008740) #15	CC2D2A (ENSSSCG00000008738) #16	C1QTNF7 (ENSSSCG00000008737) #17	CPEB2 (ENSSSCG00000038410) #18	ENSSSCG00000042681	BOD1L1 (ENSSSCG00000008735) #19	NKX3-2 (ENSSSCG00000034181) #20	RAB28 (ENSSSCG00000022358) #21	ENSSSCG00000039778	HS3ST1 (ENSSSCG00000021515) #22	CLNK (ENSSSCG00000022448) #23	ZNF518B (ENSSSCG00000029711) #24	WDR1 (ENSSSCG00000036501) #25	SLC2A9 (ENSSSCG00000031700) #27	DRD5 (ENSSSCG00000008730) #26	OTOP1 (ENSSSCG00000008731)	TMEM128 (ENSSSCG00000034122)	LYAR (ENSSSCG00000008729)	ZBTB49 (ENSSSCG00000008728)	NSG1 (ENSSSCG00000024892)	STX18 (ENSSSCG00000038731)	MSX1 (ENSSSCG00000008727)	CYTL1 (ENSSSCG00000008725)	STK32B (ENSSSCG00000035020)	EVC2 (ENSSSCG00000024399)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Camelidae	ANCESTRAL SPECIES	22	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Arabian camel	MODERN SPECIES	11	LDB2 (ENSCDRG00005019698) #7	TAPT1 (ENSCDRG00005019761) #8	PROM1 (ENSCDRG00005020057) #9	FGFBP1 (ENSCDRG00005020296) #11	CD38 (ENSCDRG00005020299) #12	BST1 (ENSCDRG00005020313) #13	FBXL5 (ENSCDRG00005020335) #15	CC2D2A (ENSCDRG00005020371) #16	C1QTNF7 (ENSCDRG00005020471) #17	CPEB2 (ENSCDRG00005020539) #18	ENSCDRG00005020797 #19	ENSCDRG00005020805 #19	NKX3-2 (ENSCDRG00005020825) #20	RAB28 (ENSCDRG00005020832) #21	ENSCDRG00005020849	HS3ST1 (ENSCDRG00005020860) #22	CLNK (ENSCDRG00005020871) #23	ZNF518B (ENSCDRG00005020898) #24	WDR1 (ENSCDRG00005020909) #25	SLC2A9 (ENSCDRG00005020966) #27	DRD5 (ENSCDRG00005021005) #26	OTOP1 (ENSCDRG00005000056)	TMEM128 (ENSCDRG00005000070)	LYAR (ENSCDRG00005000087)	ZBTB49 (ENSCDRG00005000134)	NSG1 (ENSCDRG00005000160)	STX18 (ENSCDRG00005000222)	MSX1 (ENSCDRG00005000274)	CYTL1 (ENSCDRG00005000290)	STK32B (ENSCDRG00005000325)	ENSCDRG00005000381
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Cetacea	ANCESTRAL SPECIES	12	ENSGT00390000005639.a.a #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b.d.a	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b.d.a	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00390000005639.a.a.f #7	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b.d.a	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000005639.a.a.f #7	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b.d.a	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00390000000470	ENSGT00390000005639.a.a.f #7	ENSGT00960000191062	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b.d.a	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Narwhal	MODERN SPECIES	307	QDPR (ENSMMNG00015007572)	LDB2 (ENSMMNG00015007632) #7	ENSMMNG00015007661	TAPT1 (ENSMMNG00015007681) #8	PROM1 (ENSMMNG00015007762) #9	FGFBP1 (ENSMMNG00015007939) #11	CD38 (ENSMMNG00015007949) #12	BST1 (ENSMMNG00015007970) #13	FBXL5 (ENSMMNG00015007995) #15	CC2D2A (ENSMMNG00015008058) #16	C1QTNF7 (ENSMMNG00015008166) #17	CPEB2 (ENSMMNG00015008205) #18	BOD1L1 (ENSMMNG00015008275) #19	NKX3-2 (ENSMMNG00015008382) #20	RAB28 (ENSMMNG00015008398) #21	HS3ST1 (ENSMMNG00015008431) #22	CLNK (ENSMMNG00015008444) #23	ZNF518B (ENSMMNG00015008461) #24	WDR1 (ENSMMNG00015008471) #25	NKIRAS1 (ENSMMNG00015008495)	SLC2A9 (ENSMMNG00015008516) #27	OTOP1 (ENSMMNG00015008542)	TMEM128 (ENSMMNG00015008561)	LYAR (ENSMMNG00015008576)	ZBTB49 (ENSMMNG00015008595)	ENSMMNG00015008608	STX18 (ENSMMNG00015008629)	MSX1 (ENSMMNG00015008651)	CYTL1 (ENSMMNG00015008662)	STK32B (ENSMMNG00015008686)	EVC2 (ENSMMNG00015008721)
Beluga whale	MODERN SPECIES	77	LDB2 (ENSDLEG00000015128) #7	ENSDLEG00000015152	TAPT1 (ENSDLEG00000015167) #8	PROM1 (ENSDLEG00000015203) #9	FGFBP1 (ENSDLEG00000015235) #11	CD38 (ENSDLEG00000015250) #12	BST1 (ENSDLEG00000015273) #13	FBXL5 (ENSDLEG00000015297) #15	CC2D2A (ENSDLEG00000015352) #16	C1QTNF7 (ENSDLEG00000015613) #17	CPEB2 (ENSDLEG00000015633) #18	BOD1L1 (ENSDLEG00000015686) #19	NKX3-2 (ENSDLEG00000015749) #20	RAB28 (ENSDLEG00000015762) #21	ENSDLEG00000015779	HS3ST1 (ENSDLEG00000015791) #22	ZNF518B (ENSDLEG00000015798) #24	WDR1 (ENSDLEG00000015807) #25	ENSDLEG00000015817	SLC2A9 (ENSDLEG00000015831) #27	OTOP1 (ENSDLEG00000015884)	TMEM128 (ENSDLEG00000015897)	LYAR (ENSDLEG00000015903)	ZBTB49 (ENSDLEG00000015924)	NSG1 (ENSDLEG00000015941)	STX18 (ENSDLEG00000015956)	MSX1 (ENSDLEG00000015981)	CYTL1 (ENSDLEG00000015989)	STK32B (ENSDLEG00000015999)	EVC2 (ENSDLEG00000016038)	EVC (ENSDLEG00000016237)
Vaquita	MODERN SPECIES	16	CLRN2 (ENSPSNG00000017033)	QDPR (ENSPSNG00000016877)	LDB2 (ENSPSNG00000016774) #7	TAPT1 (ENSPSNG00000015826) #8	ENSPSNG00000015629 #9	FGFBP1 (ENSPSNG00000015595) #11	CD38 (ENSPSNG00000015460) #12	BST1 (ENSPSNG00000015391) #13	FBXL5 (ENSPSNG00000015159) #15	CC2D2A (ENSPSNG00000015083) #16	C1QTNF7 (ENSPSNG00000014994) #17	CPEB2 (ENSPSNG00000014241) #18	BOD1L1 (ENSPSNG00000013797) #19	NKX3-2 (ENSPSNG00000013718) #20	RAB28 (ENSPSNG00000013465) #21	HS3ST1 (ENSPSNG00000013379) #22	CLNK (ENSPSNG00000012997) #23	ZNF518B (ENSPSNG00000012961) #24	WDR1 (ENSPSNG00000012829) #25	SLC2A9 (ENSPSNG00000012504) #27	DRD5 (ENSPSNG00000012427) #26	OTOP1 (ENSPSNG00000012308)	TMEM128 (ENSPSNG00000012265)	LYAR (ENSPSNG00000012201)	ZBTB49 (ENSPSNG00000012127)	NSG1 (ENSPSNG00000012025)	STX18 (ENSPSNG00000011864)	MSX1 (ENSPSNG00000011789)	CYTL1 (ENSPSNG00000011733)	STK32B (ENSPSNG00000011367)	EVC2 (ENSPSNG00000011215)
Dolphin	MODERN SPECIES	5403																HS3ST1 (ENSTTRG00000015902) #22
Sperm whale	MODERN SPECIES	18	LDB2 (ENSPCTG00005016082) #7	ENSPCTG00005016185	TAPT1 (ENSPCTG00005016236) #8	PROM1 (ENSPCTG00005016296) #9	FGFBP1 (ENSPCTG00005016603) #11	CD38 (ENSPCTG00005016625) #12	BST1 (ENSPCTG00005016657) #13	FAM200B (ENSPCTG00005016787) #14	FBXL5 (ENSPCTG00005016819) #15	CC2D2A (ENSPCTG00005017066) #16	C1QTNF7 (ENSPCTG00005017327) #17	CPEB2 (ENSPCTG00005017448) #18	BOD1L1 (ENSPCTG00005018351) #19	NKX3-2 (ENSPCTG00005018485) #20	RAB28 (ENSPCTG00005018522) #21	HS3ST1 (ENSPCTG00005018663) #22	CLNK (ENSPCTG00005018679) #23	ZNF518B (ENSPCTG00005019036) #24	WDR1 (ENSPCTG00005019070) #25	SLC2A9 (ENSPCTG00005019187) #27	DRD5 (ENSPCTG00005019404) #26	OTOP1 (ENSPCTG00005019487)	TMEM128 (ENSPCTG00005019542)	LYAR (ENSPCTG00005019575)	ZBTB49 (ENSPCTG00005019587)	NSG1 (ENSPCTG00005019612)	STX18 (ENSPCTG00005019650)	MSX1 (ENSPCTG00005019700)	CYTL1 (ENSPCTG00005019732)	STK32B (ENSPCTG00005019774)	EVC2 (ENSPCTG00005020039)
Blue whale	MODERN SPECIES	16	QDPR (ENSBMSG00010003709)	LDB2 (ENSBMSG00010003750) #7	ENSBMSG00010003772	TAPT1 (ENSBMSG00010003792) #8	PROM1 (ENSBMSG00010003917) #9	FGFBP1 (ENSBMSG00010004072) #11	CD38 (ENSBMSG00010004087) #12	BST1 (ENSBMSG00010004113) #13	FBXL5 (ENSBMSG00010004146) #15	CC2D2A (ENSBMSG00010004193) #16	C1QTNF7 (ENSBMSG00010004225) #17	CPEB2 (ENSBMSG00010004303) #18	BOD1L1 (ENSBMSG00010004697) #19	NKX3-2 (ENSBMSG00010004708) #20	RAB28 (ENSBMSG00010004737) #21	HS3ST1 (ENSBMSG00010004771) #22	ENSBMSG00010004830 #23	ZNF518B (ENSBMSG00010004847) #24	WDR1 (ENSBMSG00010004867) #25	SLC2A9 (ENSBMSG00010004911) #27	DRD5 (ENSBMSG00010004931) #26	OTOP1 (ENSBMSG00010004937)	TMEM128 (ENSBMSG00010004943)	LYAR (ENSBMSG00010004951)	ZBTB49 (ENSBMSG00010004959)	ENSBMSG00010004971	STX18 (ENSBMSG00010004982)	MSX1 (ENSBMSG00010004988)	CYTL1 (ENSBMSG00010004992)	STK32B (ENSBMSG00010005016)	EVC2 (ENSBMSG00010005079)
Pecora	ANCESTRAL SPECIES	15	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Yarkand deer	MODERN SPECIES	29	FGFBP1 (ENSCHYG00000012513) #11	ENSCHYG00000012481	ENSCHYG00000012436 #12	BST1 (ENSCHYG00000012217) #13	FBXL5 (ENSCHYG00000012169) #15	CC2D2A (ENSCHYG00000011930) #16	C1QTNF7 (ENSCHYG00000011860) #17	CPEB2 (ENSCHYG00000009885) #18	ENSCHYG00000009663	ENSCHYG00000009631	ENSCHYG00000009590 #19	ENSCHYG00000009368 #19	NKX3-2 (ENSCHYG00000009308) #20	RAB28 (ENSCHYG00000009138) #21	ENSCHYG00000009087	HS3ST1 (ENSCHYG00000009034) #22	ENSCHYG00000009026	ENSCHYG00000009011	ENSCHYG00000021665	CLNK (ENSCHYG00000021467) #23	ZNF518B (ENSCHYG00000021439) #24	WDR1 (ENSCHYG00000021193) #25	SLC2A9 (ENSCHYG00000021009) #27	DRD5 (ENSCHYG00000020974) #26	OTOP1 (ENSCHYG00000020927)	TMEM128 (ENSCHYG00000020873)	LYAR (ENSCHYG00000020808)	ZBTB49 (ENSCHYG00000020730)	ENSCHYG00000020601	ENSCHYG00000020468	MSX1 (ENSCHYG00000020422)
Percora_a	ANCESTRAL SPECIES	18	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.i	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Siberian musk deer	MODERN SPECIES	1273											ENSMMSG00000021739	BOD1L1 (ENSMMSG00000021751) #19	NKX3-2 (ENSMMSG00000021826) #20	RAB28 (ENSMMSG00000021853) #21	ENSMMSG00000021901	HS3ST1 (ENSMMSG00000021922) #22	CLNK (ENSMMSG00000021938) #23	ENSMMSG00000022035	ZNF518B (ENSMMSG00000022054) #24	WDR1 (ENSMMSG00000022069) #25	SLC2A9 (ENSMMSG00000022146) #27	DRD5 (ENSMMSG00000022201) #26	OTOP1 (ENSMMSG00000022207)	TMEM128 (ENSMMSG00000022229)	ENSMMSG00000022248	ZBTB49 (ENSMMSG00000022265)	NSG1 (ENSMMSG00000022287)	STX18 (ENSMMSG00000022315)	MSX1 (ENSMMSG00000022332)	CYTL1 (ENSMMSG00000022341)	STK32B (ENSMMSG00000022366)
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00950000183314	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.i	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.i	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Rambouillet Sheep	MODERN SPECIES	22	QDPR (ENSOARG00020006022)	LDB2 (ENSOARG00020005920) #7	TAPT1 (ENSOARG00020005806) #8	PROM1 (ENSOARG00020005636) #9	FGFBP1 (ENSOARG00020005605) #11	FBXL5 (ENSOARG00020005427) #15	ENSOARG00020005331 #16	C1QTNF7 (ENSOARG00020005280) #17	CPEB2 (ENSOARG00020004782) #18	ENSOARG00020004717	ENSOARG00020003695	BOD1L1 (ENSOARG00020003558) #19	NKX3-2 (ENSOARG00020003540) #20	RAB28 (ENSOARG00020003366)	ENSOARG00020003330	HS3ST1 (ENSOARG00020003309) #22	WDR1 (ENSOARG00020003043) #25	SLC2A9 (ENSOARG00020002984) #27	DRD5 (ENSOARG00020024384) #26	OTOP1 (ENSOARG00020024371)	TMEM128 (ENSOARG00020024364)	LYAR (ENSOARG00020024350)	ZBTB49 (ENSOARG00020024332)	NSG1 (ENSOARG00020024305)	MSX1 (ENSOARG00020024231)	CYTL1 (ENSOARG00020024206)	STK32B (ENSOARG00020024051)	EVC2 (ENSOARG00020024014)	EVC (ENSOARG00020023672)	CRMP1 (ENSOARG00020023499)	ENSOARG00020023479
Goat	MODERN SPECIES	25	ENSCHIG00000023084 #7	ENSCHIG00000009869 #7	TAPT1 (ENSCHIG00000013524) #8	PROM1 (ENSCHIG00000026198) #9	FGFBP1 (ENSCHIG00000008489) #11	ENSCHIG00000003874 #12	BST1 (ENSCHIG00000020433) #13	FBXL5 (ENSCHIG00000011040) #15	CC2D2A (ENSCHIG00000020491) #16	C1QTNF7 (ENSCHIG00000011783) #17	CPEB2 (ENSCHIG00000022582) #18	ENSCHIG00000022972 #19	ENSCHIG00000016991 ##19	NKX3-2 (ENSCHIG00000011125) #20	RAB28 (ENSCHIG00000022313) #21	HS3ST1 (ENSCHIG00000004675) #22	ZNF518B (ENSCHIG00000007609) #24	WDR1 (ENSCHIG00000024713) #25	SLC2A9 (ENSCHIG00000016678) #27	DRD5 (ENSCHIG00000008414) #26	OTOP1 (ENSCHIG00000019597)	TMEM128 (ENSCHIG00000011114)	LYAR (ENSCHIG00000020398)	ZBTB49 (ENSCHIG00000015069)	NSG1 (ENSCHIG00000008294)	STX18 (ENSCHIG00000020439)	MSX1 (ENSCHIG00000014094)	CYTL1 (ENSCHIG00000001722)	STK32B (ENSCHIG00000021477)	EVC2 (ENSCHIG00000014543)	EVC (ENSCHIG00000024455)
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00950000183314	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.i	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Bos	ANCESTRAL SPECIES	15	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00950000183314	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.i	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Bos_b	ANCESTRAL SPECIES	14	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00940000164387 #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00950000183314	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477.i	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Cow	MODERN SPECIES	25	TAPT1 (ENSBTAG00000019451) #8	PROM1 (ENSBTAG00000013736) #9	FGFBP1 (ENSBTAG00000031497) #11	CD38 (ENSBTAG00000013569) #12	BST1 (ENSBTAG00000006156) #13	FAM200B (ENSBTAG00000055011) #14	FBXL5 (ENSBTAG00000021214) #15	ENSBTAG00000050294	CC2D2A (ENSBTAG00000018638) #16	C1QTNF7 (ENSBTAG00000010343) #17	CPEB2 (ENSBTAG00000019847) #18	ENSBTAG00000050349	BOD1L1 (ENSBTAG00000004316) #19	NKX3-2 (ENSBTAG00000010896) #20	RAB28 (ENSBTAG00000003218) #21	HS3ST1 (ENSBTAG00000007449) #22	ZNF518B (ENSBTAG00000050234) #24	WDR1 (ENSBTAG00000013607) #25	SLC2A9 (ENSBTAG00000039197) #27	DRD5 (ENSBTAG00000038606) #26	OTOP1 (ENSBTAG00000003651)	TMEM128 (ENSBTAG00000003652)	LYAR (ENSBTAG00000003653)	ZBTB49 (ENSBTAG00000014680)	NSG1 (ENSBTAG00000005711)	ENSBTAG00000050796	STX18 (ENSBTAG00000005712)	MSX1 (ENSBTAG00000010875)	CYTL1 (ENSBTAG00000011163)	STK32B (ENSBTAG00000015409)	EVC2 (ENSBTAG00000004277)
Hybrid Bos Indicus	MODERN SPECIES	25	ENSBIXG00005012958	TAPT1 (ENSBIXG00005012970) #8	ENSBIXG00005013008 #9	FGFBP1 (ENSBIXG00005013030) #11	ENSBIXG00005007111 #12	BST1 (ENSBIXG00005013077) #13	FAM200B (ENSBIXG00005013096) #14	FBXL5 (ENSBIXG00005006115) #15	CC2D2A (ENSBIXG00005013256) #16	C1QTNF7 (ENSBIXG00005001533) #17	CPEB2 (ENSBIXG00005013572) #18	ENSBIXG00005013646	BOD1L1 (ENSBIXG00005013673) #19	NKX3-2 (ENSBIXG00005001678) #20	RAB28 (ENSBIXG00005013804) #21	HS3ST1 (ENSBIXG00005013879) #22	CLNK (ENSBIXG00005007266) #23	ENSBIXG00005013989	ZNF518B (ENSBIXG00005014001) #24	WDR1 (ENSBIXG00005001825) #25	SLC2A9 (ENSBIXG00005014165) #27	DRD5 (ENSBIXG00005001854) #26	OTOP1 (ENSBIXG00005001859)	TMEM128 (ENSBIXG00005014242)	LYAR (ENSBIXG00005005406)	ZBTB49 (ENSBIXG00005014310)	NSG1 (ENSBIXG00005014389)	STX18 (ENSBIXG00005005974)	MSX1 (ENSBIXG00005014501)	CYTL1 (ENSBIXG00005006226)	ENSBIXG00005002014
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000160449 #22
Wild yak	MODERN SPECIES	878															ENSBMUG00000006306	HS3ST1 (ENSBMUG00000006311) #22
American bison	MODERN SPECIES	3293	QDPR (ENSBBBG00000003397)	LDB2 (ENSBBBG00000014565) #7	TAPT1 (ENSBBBG00000014576) #8	PROM1 (ENSBBBG00000003515) #9	FGFBP1 (ENSBBBG00000014610) #11	ENSBBBG00000003529 #12	BST1 (ENSBBBG00000003553) #13	FBXL5 (ENSBBBG00000014676) #15	CC2D2A (ENSBBBG00000014731) #16	C1QTNF7 (ENSBBBG00000014745) #17	ENSBBBG00000002832 #18	ENSBBBG00000003647	BOD1L1 (ENSBBBG00000014848) #19	NKX3-2 (ENSBBBG00000003659) #20	RAB28 (ENSBBBG00000014911) #21	ENSBBBG00000001214 #22	CLNK (ENSBBBG00000001160) #23	ZNF518B (ENSBBBG00000001154) #24	WDR1 (ENSBBBG00000001048) #25	ENSBBBG00000001039	ENSBBBG00000001032	ENSBBBG00000001022	TMEM176B (ENSBBBG00000000940)	TMEM176A (ENSBBBG00000000895)	AOC1 (ENSBBBG00000000843)	KCNH2 (ENSBBBG00000014939)	NOS3 (ENSBBBG00000015062)	ATG9B (ENSBBBG00000015091)	ENSBBBG00000015114	ASIC3 (ENSBBBG00000003750)	CDK5 (ENSBBBG00000003543)
Atlantogenata	ANCESTRAL SPECIES	46	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Afrotheria	ANCESTRAL SPECIES	53	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Afrotheria_a	ANCESTRAL SPECIES	50	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Elephant	MODERN SPECIES	164	LDB2 (ENSLAFG00000000552) #7	ENSLAFG00000028231	TAPT1 (ENSLAFG00000003952) #8	PROM1 (ENSLAFG00000004007) #9	ENSLAFG00000000871 #11	ENSLAFG00000013298 #12	BST1 (ENSLAFG00000006613) #13	FBXL5 (ENSLAFG00000022751) #15	ENSLAFG00000025555	CC2D2A (ENSLAFG00000004935) #16	C1QTNF7 (ENSLAFG00000023327) #17	ENSLAFG00000007142 #18	ENSLAFG00000007535 #19	NKX3-2 (ENSLAFG00000031404) #20	RAB28 (ENSLAFG00000002485) #21	HS3ST1 (ENSLAFG00000017334) #22	CLNK (ENSLAFG00000010915) #23	ZNF518B (ENSLAFG00000013802) #24	WDR1 (ENSLAFG00000007080) #25	DRD5 (ENSLAFG00000032155) #26	OTOP1 (ENSLAFG00000031511)	TMEM128 (ENSLAFG00000016577)	LYAR (ENSLAFG00000016582)	ZBTB49 (ENSLAFG00000016590)	NSG1 (ENSLAFG00000000393)	STX18 (ENSLAFG00000000395)	MSX1 (ENSLAFG00000013862)	CYTL1 (ENSLAFG00000014417)	STK32B (ENSLAFG00000015017)	EVC2 (ENSLAFG00000006990)	EVC (ENSLAFG00000010305)
Hyrax	MODERN SPECIES	9327																HS3ST1 (ENSPCAG00000008061) #22
Xenarthra	ANCESTRAL SPECIES	1280																ENSGT00940000160449 #22	ENSGT00690000102286.b	ENSGT00940000161846 #23	ENSGT00940000160595.b #24
Armadillo	MODERN SPECIES	1902															ENSDNOG00000049790	HS3ST1 (ENSDNOG00000010070) #22	ENSDNOG00000048005	CLNK (ENSDNOG00000017716) #23	ZNF518B (ENSDNOG00000038140) #24	ENSDNOG00000041700
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Opossum	MODERN SPECIES	4	ENSMODG00000001007 #12	BST1 (ENSMODG00000001017) #13	FBXL5 (ENSMODG00000001064) #15	CC2D2A (ENSMODG00000001102) #16	C1QTNF7 (ENSMODG00000046573) #17	CPEB2 (ENSMODG00000001149) #18	ENSMODG00000001155	ENSMODG00000043625	ENSMODG00000039719 #19	ENSMODG00000001180 #19	NKX3-2 (ENSMODG00000043621) #20	ENSMODG00000001223	ENSMODG00000039859	ENSMODG00000050612	ENSMODG00000047927	HS3ST1 (ENSMODG00000001290) #22	ENSMODG00000025533 #23	ENSMODG00000001319 #24	WDR1 (ENSMODG00000001392) #25	SLC2A9 (ENSMODG00000001450) #27	ENSMODG00000043598	DRD5 (ENSMODG00000001462) #26	TMEM128 (ENSMODG00000024746)	LYAR (ENSMODG00000001500)	ZBTB49 (ENSMODG00000001516)	NSG1 (ENSMODG00000001519)	STX18 (ENSMODG00000001530)	ENSMODG00000029530	MSX1 (ENSMODG00000001535)	CYTL1 (ENSMODG00000001542)	STK32B (ENSMODG00000001697)
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000156198.d ##19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Common wonbat	MODERN SPECIES	1054	LDB2 (ENSVURG00010002542) #7	TAPT1 (ENSVURG00010001958) #8	PROM1 (ENSVURG00010001779) #9	ENSVURG00010001766 #10	ENSVURG00010001717 #11	CD38 (ENSVURG00010001704) #12	BST1 (ENSVURG00010001669) #13	FBXL5 (ENSVURG00010001648) #15	CC2D2A (ENSVURG00010001386) #16	C1QTNF7 (ENSVURG00010001365) #17	CPEB2 (ENSVURG00010000904) #18	ENSVURG00010000789	BOD1L1 (ENSVURG00010000594) #19	NKX3-2 (ENSVURG00010000568) #20	ENSVURG00010000538	HS3ST1 (ENSVURG00010000443) #22	ENSVURG00010000408 #24	WDR1 (ENSVURG00010022382) #25	SLC2A9 (ENSVURG00010022378) #27	DRD5 (ENSVURG00010022373) #26	OTOP1 (ENSVURG00010022367)	TMEM128 (ENSVURG00010022363)	LYAR (ENSVURG00010022358)	ZBTB49 (ENSVURG00010022353)	NSG1 (ENSVURG00010022350)	STX18 (ENSVURG00010022343)	MSX1 (ENSVURG00010022338)	CYTL1 (ENSVURG00010022336)	STK32B (ENSVURG00010022325)	EVC2 (ENSVURG00010022292)	EVC (ENSVURG00010022280)
koala	MODERN SPECIES	43															ENSPCIG00000030595	HS3ST1 (ENSPCIG00000014892) #22	ENSPCIG00000035338	ENSPCIG00000031389 #23	ENSPCIG00000035714 #24	ENSPCIG00000036937	WDR1 (ENSPCIG00000028079) #25	ENSPCIG00000028167 #27	DRD5 (ENSPCIG00000028209) #26	OTOP1 (ENSPCIG00000028210)	TMEM128 (ENSPCIG00000028211)	LYAR (ENSPCIG00000028212)	ENSPCIG00000034887	ENSPCIG00000034616	ENSPCIG00000028213	NSG1 (ENSPCIG00000028214)	STX18 (ENSPCIG00000028215)
Tasmanian devil	MODERN SPECIES	5	QDPR (ENSSHAG00000020885)	LDB2 (ENSSHAG00000017644) #7	TAPT1 (ENSSHAG00000026955) #8	PROM1 (ENSSHAG00000018318) #9	ENSSHAG00000018438 #10	ENSSHAG00000018471 #11	CD38 (ENSSHAG00000023213) #12	BST1 (ENSSHAG00000003456) #13	FBXL5 (ENSSHAG00000004867) #15	C1QTNF7 (ENSSHAG00000007411) #17	CC2D2A (ENSSHAG00000005645) #16	CPEB2 (ENSSHAG00000009862) #18	BOD1L1 (ENSSHAG00000021224) #19	ENSSHAG00000023972 #20	ENSSHAG00000009274	ENSSHAG00000009978 #22	ENSSHAG00000027669 #23	ENSSHAG00000013734 #24	ENSSHAG00000023079 #25	ENSSHAG00000027701 #27	ENSSHAG00000007567 #26	ENSSHAG00000007809	TMEM128 (ENSSHAG00000021803)	LYAR (ENSSHAG00000029797)	ZBTB49 (ENSSHAG00000008414)	NSG1 (ENSSHAG00000028146)	STX18 (ENSSHAG00000008946)	MSX1 (ENSSHAG00000022210)	CYTL1 (ENSSHAG00000032272)	STK32B (ENSSHAG00000024135)	EVC2 (ENSSHAG00000014556)
Platypus	MODERN SPECIES	15	ENSOANG00000013830	ENSOANG00000040452	LDB2 (ENSOANG00000004866) #7	TAPT1 (ENSOANG00000004220) #8	ENSOANG00000013966 #9	ENSOANG00000039137 #10	ENSOANG00000015680 #11	BST1 (ENSOANG00000051248) #13	FBXL5 (ENSOANG00000010867) #15	CC2D2A (ENSOANG00000039984) #16	C1QTNF7 (ENSOANG00000008795) #17	CPEB2 (ENSOANG00000003552) #18	ENSOANG00000047559 #19	ENSOANG00000005806 #19	ENSOANG00000041536	HS3ST1 (ENSOANG00000012467) #22	ENSOANG00000041268 #23	ENSOANG00000013888 #24	WDR1 (ENSOANG00000012065) #25	SLC2A9 (ENSOANG00000007038) #27	OTOP1 (ENSOANG00000010378)	ENSOANG00000042535	LYAR (ENSOANG00000012997)	ZBTB49 (ENSOANG00000048276)	ENSOANG00000045191	STX18 (ENSOANG00000012077)	MSX1 (ENSOANG00000043882)	CYTL1 (ENSOANG00000042158)	STK32B (ENSOANG00000004349)	ENSOANG00000004350	ENSOANG00000048670
Sauria	ANCESTRAL SPECIES	6	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000164226	ENSGT00390000009948.d	ENSGT00940000161587	ENSGT00390000011010.b	ENSGT00530000064017.b	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT01020000230338	ENSGT00390000009359.a	ENSGT01100000263564.b	ENSGT00940000161053
Laterata	ANCESTRAL SPECIES	21	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT01020000230338.h	ENSGT00390000009359.a	ENSGT01100000263564.b	ENSGT00940000161053
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	16	GPAT4 (ENSPMRG00000019960)	NKX6-3 (ENSPMRG00000019967)	ANK1 (ENSPMRG00000020098)	KAT6A (ENSPMRG00000020518)	AP3M2 (ENSPMRG00000020552)	PLAT (ENSPMRG00000020565)	ENSPMRG00000009789	IKBKB (ENSPMRG00000009818)	ENSPMRG00000009943	ENSPMRG00000009947	VDAC3 (ENSPMRG00000009951)	MAT2A (ENSPMRG00000009964)	ENSPMRG00000009973	ENSPMRG00000009982	ENSPMRG00000009997	ENSPMRG00000010001 #22	H2AZ2 (ENSPMRG00000010009)	PURB (ENSPMRG00000010017)	ENSPMRG00000010020	ENSPMRG00000010023	ENSPMRG00000010024	ARHGEF10L (ENSPMRG00000010105)	IGSF21 (ENSPMRG00000010536)	ENSPMRG00000010540	ENSPMRG00000010544	ENSPMRG00000010554	ENSPMRG00000010557	ENSPMRG00000010565	PAX7 (ENSPMRG00000010572)	ALDH4A1 (ENSPMRG00000010739)	ENSPMRG00000011476
Common wall lizard	MODERN SPECIES	17	CPZ (ENSPMRG00000016339)	TRMT44 (ENSPMRG00000016316)	ACOX3 (ENSPMRG00000016299)	HTRA3 (ENSPMRG00000016288)	CD38 (ENSPMRG00000016281) #12	FBXL5 (ENSPMRG00000016273) #15	CC2D2A (ENSPMRG00000016119) #16	ENSPMRG00000016093	C1QTNF7 (ENSPMRG00000016090) #17	CPEB2 (ENSPMRG00000016085) #18	ENSPMRG00000016050 #19	ENSPMRG00000016024 #19	NKX3-2 (ENSPMRG00000016015) #20	ENSPMRG00000015996	ENSPMRG00000015988	HS3ST1 (ENSPMRG00000015983) #22	ENSPMRG00000015978	ZNF518B (ENSPMRG00000015971) #24	WDR1 (ENSPMRG00000015959) #25	SLC2A9 (ENSPMRG00000015928) #27	DRD5 (ENSPMRG00000015914) #26	OTOP1 (ENSPMRG00000015904)	TMEM128 (ENSPMRG00000015902)	LYAR (ENSPMRG00000015894)	ZBTB49 (ENSPMRG00000015875)	NSG1 (ENSPMRG00000015856)	STX18 (ENSPMRG00000015836)	ENSPMRG00000015828	ENSPMRG00000015820	ENSPMRG00000015813	ENSPMRG00000015806
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	127								KAT6A (ENSSMRG00000019823)	AP3M2 (ENSSMRG00000019822)	PLAT (ENSSMRG00000019821)	IKBKB (ENSSMRG00000019820)	MAT2A (ENSSMRG00000019819)	ENSSMRG00000019818	ENSSMRG00000019816	POLM (ENSSMRG00000019815)	ENSSMRG00000019814 #22	H2AZ2 (ENSSMRG00000019813)	PURB (ENSSMRG00000019812)	ENSSMRG00000019811	ENSSMRG00000019810	ACTR1B (ENSSMRG00000019809)	COX5B (ENSSMRG00000019808)	ENSSMRG00000019806	SEMA4C (ENSSMRG00000019805)	ANKRD39 (ENSSMRG00000019804)	ENSSMRG00000019803	CNNM3 (ENSSMRG00000019802)	ENSSMRG00000019801	LMAN2L (ENSSMRG00000019800)	ENSSMRG00000019799	ENSSMRG00000019798
Argentine black and white tegu	MODERN SPECIES	1	ENSSMRG00000000602	TAPT1 (ENSSMRG00000000542) #8	PROM1 (ENSSMRG00000000168) #9	FGFBP1 (ENSSMRG00000000122) #11	CD38 (ENSSMRG00000000079) #12	FBXL5 (ENSSMRG00000000027) #15	CC2D2A (ENSSMRG00000023452) #16	ENSSMRG00000023451	C1QTNF7 (ENSSMRG00000023450) #17	CPEB2 (ENSSMRG00000023449) #18	ENSSMRG00000023447 #19	ENSSMRG00000023446 #19	NKX3-2 (ENSSMRG00000023445) #20	RAB28 (ENSSMRG00000023444) #21	ENSSMRG00000023442	HS3ST1 (ENSSMRG00000023441) #22	ZNF518B (ENSSMRG00000023440) #24	WDR1 (ENSSMRG00000023439) #25	ENSSMRG00000023437	SLC2A9 (ENSSMRG00000023436) #27	DRD5 (ENSSMRG00000023435) #26	OTOP1 (ENSSMRG00000023434)	TMEM128 (ENSSMRG00000023433)	LYAR (ENSSMRG00000023432)	ZBTB49 (ENSSMRG00000023431)	NSG1 (ENSSMRG00000023430)	STX18 (ENSSMRG00000023429)	MSX1 (ENSSMRG00000023427)	ENSSMRG00000023426	NECAP1 (ENSSMRG00000023425)	C3AR1 (ENSSMRG00000023424)
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00390000000134.b	ENSGT00390000003246	ENSGT00940000167325	ENSGT01030000234574.B.c.b.b	ENSGT00940000160545	ENSGT00940000155760	ENSGT00940000156962	ENSGT00940000157991	ENSGT00940000158930	ENSGT00940000179153	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b	ENSGT00950000183185.c.a.a	ENSGT00940000165439	ENSGT00940000158490	ENSGT00940000160449 #22	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000009359.a	ENSGT01100000263564.b
Elapidae	ANCESTRAL SPECIES	15				ENSGT01030000234574.B.c.b.b	ENSGT00940000160545	ENSGT00940000155760	ENSGT00940000156962	ENSGT00940000157991	ENSGT00940000158930	ENSGT00940000179153	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b	ENSGT00950000183185.c.a.a	ENSGT00940000165439	ENSGT00940000158490	ENSGT00940000160449 #22	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000164226	ENSGT00390000009948.d	ENSGT00940000161587	ENSGT00390000011010.b	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000175342	ENSGT00940000161102	ENSGT00940000156317.k	ENSGT00940000155596	ENSGT00730000111181	ENSGT00940000156239	ENSGT00940000164380.a
Elapidae_a	ANCESTRAL SPECIES	93					ENSGT01030000234574.B.c.b.b	ENSGT00940000160545	ENSGT00940000155760	ENSGT00940000156962	ENSGT00940000157991	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b	ENSGT00950000183185.c.a.a	ENSGT00940000165439	ENSGT00940000158490	ENSGT00940000160449 #22	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000164226	ENSGT00390000009948.d	ENSGT00940000161587	ENSGT00390000011010.b	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000175342	ENSGT00940000161102	ENSGT00940000156317.k	ENSGT00940000155596	ENSGT00730000111181	ENSGT00940000156239	ENSGT00940000164380.a
Acanthophiinae	ANCESTRAL SPECIES	40	ENSGT01050000244827.D.b.a	ENSGT00390000004149	ENSGT00940000162540	ENSGT00940000161253	ENSGT01030000234574.B.c.b.b	ENSGT00940000160545	ENSGT00940000155760	ENSGT00940000156962	ENSGT00940000157991.m	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b	ENSGT00950000183185.c.a.a	ENSGT00940000165439	ENSGT00940000158490	ENSGT00940000160449 #22	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000164226	ENSGT00390000009948.d	ENSGT00940000161587	ENSGT00390000011010.b.dc	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000175342	ENSGT00940000161102	ENSGT00940000156317.k	ENSGT00940000155596	ENSGT00730000111181	ENSGT00940000156239	ENSGT00940000164380.a
Mainland tiger snake	MODERN SPECIES	625																HS3ST1 (ENSNSUG00000007771) #22	H2AZ2 (ENSNSUG00000007769)	PURB (ENSNSUG00000007767)	ENSNSUG00000007766
Eastern brown snake	MODERN SPECIES	76	NEURL3 (ENSPTXG00000013970)	ARID5A (ENSPTXG00000013966)	ENSPTXG00000013962	GPAT4 (ENSPTXG00000013955)	NKX6-3 (ENSPTXG00000013954)	ANK1 (ENSPTXG00000013234)	KAT6A (ENSPTXG00000013226)	AP3M2 (ENSPTXG00000013223)	PLAT (ENSPTXG00000013159)	IKBKB (ENSPTXG00000012462)	VDAC3 (ENSPTXG00000012447)	MAT2A (ENSPTXG00000012446)	ENSPTXG00000012444	ENSPTXG00000012440	POLM (ENSPTXG00000012435)	HS3ST1 (ENSPTXG00000012434) #22	H2AZ2 (ENSPTXG00000012432)	PURB (ENSPTXG00000012429)	ENSPTXG00000012428	ENSPTXG00000012426	ACTR1B (ENSPTXG00000012424)	ENSPTXG00000012423	SEMA4C (ENSPTXG00000012421)	ANKRD39 (ENSPTXG00000012419)	ENSPTXG00000012413	LMAN2L (ENSPTXG00000012409)	TM2D2 (ENSPTXG00000012407)	ADAM9 (ENSPTXG00000012404)	ENSPTXG00000012392	TCIM (ENSPTXG00000012390)	ENSPTXG00000012388
Blue-lipped sea krait	MODERN SPECIES	6048																HS3ST1 (ENSLLTG00000014528) #22	H2AZ2 (ENSLLTG00000014531)	PURB (ENSLLTG00000014539)	ENSLLTG00000014543
Indian cobra	MODERN SPECIES	7	GPAT4 (ENSNNAG00000004385)	ENSNNAG00000004417	ENSNNAG00000004446	ENSNNAG00000004511	ENSNNAG00000004518	KAT6A (ENSNNAG00000004542)	AP3M2 (ENSNNAG00000004604)	PLAT (ENSNNAG00000004638)	ENSNNAG00000004661	IKBKB (ENSNNAG00000004683)	VDAC3 (ENSNNAG00000004768)	MAT2A (ENSNNAG00000004787)	ENSNNAG00000004806	ENSNNAG00000004853	ENSNNAG00000004873	ENSNNAG00000004886 #22	H2AZ2 (ENSNNAG00000004899)	PURB (ENSNNAG00000004912)	ENSNNAG00000004923	ENSNNAG00000004934	ACTR1B (ENSNNAG00000004970)	COX5B (ENSNNAG00000005003)	SEMA4C (ENSNNAG00000005021)	ANKRD39 (ENSNNAG00000005053)	ENSNNAG00000005066	CNNM3 (ENSNNAG00000005095)	ENSNNAG00000005140	LMAN2L (ENSNNAG00000005170)	TM2D2 (ENSNNAG00000005202)	ADAM9 (ENSNNAG00000005308)	ENSNNAG00000006516
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1096																ENSACAG00000006022 #22	H2AZ2 (ENSACAG00000044769)	ENSACAG00000006057	ENSACAG00000038438	ACTR1B (ENSACAG00000006123)	COX5B (ENSACAG00000006179)	FAM178B (ENSACAG00000029424)	SEMA4C (ENSACAG00000006206)	ANKRD39 (ENSACAG00000006331)	ENSACAG00000006344	CNNM3 (ENSACAG00000025824)	ENSACAG00000006409	LMAN2L (ENSACAG00000006475)
Lizard	MODERN SPECIES	850															ENSACAG00000028124	HS3ST1 (ENSACAG00000005574) #22	ENSACAG00000042448	WDR1 (ENSACAG00000010583) #25	SLC2A9 (ENSACAG00000010759) #27	DRD5 (ENSACAG00000010888) #26	ENSACAG00000038617	OTOP1 (ENSACAG00000010902)	TMEM128 (ENSACAG00000010933)	ENSACAG00000041705	LYAR (ENSACAG00000028262)	ENSACAG00000042086	ZBTB49 (ENSACAG00000010957)	NSG1 (ENSACAG00000035567)	STX18 (ENSACAG00000011038)	MSX1 (ENSACAG00000042172)	ENSACAG00000011057
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Aves	ANCESTRAL SPECIES	3	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Neognathae	ANCESTRAL SPECIES	5	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Golden eagle	MODERN SPECIES		LDB2 (ENSACCG00020000187) #7	TAPT1 (ENSACCG00020000186) #8	PROM1 (ENSACCG00020000185) #9	FGFBP2 (ENSACCG00020000184) #10	FGFBP1 (ENSACCG00020000183) #11	CD38 (ENSACCG00020000182) #12	BST1 (ENSACCG00020000181) #13	FBXL5 (ENSACCG00020000180) #15	CC2D2A (ENSACCG00020000179) #16	C1QTNF7 (ENSACCG00020000178) #17	CPEB2 (ENSACCG00020000177) #18	ENSACCG00020000175 #19	ENSACCG00020000174 #19	NKX3-2 (ENSACCG00020000173) #20	RAB28 (ENSACCG00020000172) #21	HS3ST1 (ENSACCG00020000171) #22	ZNF518B (ENSACCG00020000170) #24	WDR1 (ENSACCG00020000169) #25	SLC2A9 (ENSACCG00020000168) #27	DRD5 (ENSACCG00020000167) #26	OTOP1 (ENSACCG00020000166)	TMEM128 (ENSACCG00020000165)	LYAR (ENSACCG00020000164)	ZBTB49 (ENSACCG00020000163)	NSG1 (ENSACCG00020000162)	STX18 (ENSACCG00020000161)	MSX1 (ENSACCG00020000160)	CYTL1 (ENSACCG00020000159)	STK32B (ENSACCG00020000158)	EVC2 (ENSACCG00020000157)	EVC (ENSACCG00020000156)
Kakapo	MODERN SPECIES	24	QDPR (ENSSHBG00005011714)	LDB2 (ENSSHBG00005011680) #7	TAPT1 (ENSSHBG00005011651) #8	PROM1 (ENSSHBG00005011602) #9	FGFBP2 (ENSSHBG00005011546) #10	FGFBP1 (ENSSHBG00005011531) #11	CD38 (ENSSHBG00005011518) #12	BST1 (ENSSHBG00005011491) #13	FBXL5 (ENSSHBG00005011453) #15	CC2D2A (ENSSHBG00005011343) #16	C1QTNF7 (ENSSHBG00005011280) #17	CPEB2 (ENSSHBG00005011259) #18	ENSSHBG00005011196 #19	NKX3-2 (ENSSHBG00005011160) #20	ENSSHBG00005011136	HS3ST1 (ENSSHBG00005011102) #22	ZNF518B (ENSSHBG00005011079) #24	WDR1 (ENSSHBG00005010846) #25	SLC2A9 (ENSSHBG00005010762) #27	DRD5 (ENSSHBG00005010659) #26	OTOP1 (ENSSHBG00005010316)	TMEM128 (ENSSHBG00005010250)	LYAR (ENSSHBG00005010222)	ZBTB49 (ENSSHBG00005010175)	NSG1 (ENSSHBG00005000700)	STX18 (ENSSHBG00005018968)	MSX1 (ENSSHBG00005018964)	CYTL1 (ENSSHBG00005018950)	STK32B (ENSSHBG00005018947)	EVC2 (ENSSHBG00005018930)	EVC (ENSSHBG00005018912)
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Great tit	MODERN SPECIES	23	PROM1 (ENSPMJG00000016354) #9	FGFBP2 (ENSPMJG00000016358) #10	FGFBP1 (ENSPMJG00000016359) #11	CD38 (ENSPMJG00000016360) #12	ENSPMJG00000016361	BST1 (ENSPMJG00000016362) #13	FBXL5 (ENSPMJG00000016363) #15	CC2D2A (ENSPMJG00000016364) #16	ENSPMJG00000016366	C1QTNF7 (ENSPMJG00000016367) #17	CPEB2 (ENSPMJG00000016370) #18	ENSPMJG00000016372	BOD1L1 (ENSPMJG00000016374) #19	NKX3-2 (ENSPMJG00000016375) #20	RAB28 (ENSPMJG00000016376) #21	HS3ST1 (ENSPMJG00000016380) #22	CLNK (ENSPMJG00000016383) #23	ZNF518B (ENSPMJG00000016385) #24	WDR1 (ENSPMJG00000016386) #25	SLC2A9 (ENSPMJG00000016395) #27	DRD5 (ENSPMJG00000016397) #26	OTOP1 (ENSPMJG00000016398)	TMEM128 (ENSPMJG00000016399)	LYAR (ENSPMJG00000016400)	ZBTB49 (ENSPMJG00000016401)	STX18 (ENSPMJG00000016402)	NSG1 (ENSPMJG00000016403)	MSX1 (ENSPMJG00000016405)	CYTL1 (ENSPMJG00000016407)	STK32B (ENSPMJG00000016408)	EVC2 (ENSPMJG00000016409)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00390000005639.a.a.b #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00390000005639.a.a.b #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00390000005639.a.a.b #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Zebra finch	MODERN SPECIES	25	QDPR (ENSTGUG00000023659)	LDB2 (ENSTGUG00000009708) #7	TAPT1 (ENSTGUG00000009719) #8	PROM1 (ENSTGUG00000009725) #9	FGFBP2 (ENSTGUG00000009762) #10	FGFBP1 (ENSTGUG00000009763) #11	ENSTGUG00000009764 #12	BST1 (ENSTGUG00000009768) #13	FBXL5 (ENSTGUG00000009775) #15	CC2D2A (ENSTGUG00000009795) #16	C1QTNF7 (ENSTGUG00000022614) #17	CPEB2 (ENSTGUG00000009822) #18	BOD1L1 (ENSTGUG00000024952) #19	NKX3-2 (ENSTGUG00000022168) #20	RAB28 (ENSTGUG00000009853) #21	HS3ST1 (ENSTGUG00000025106) #22	CLNK (ENSTGUG00000025434) #23	ZNF518B (ENSTGUG00000009873) #24	WDR1 (ENSTGUG00000009876) #25	SLC2A9 (ENSTGUG00000009891) #27	DRD5 (ENSTGUG00000009908) #26	OTOP1 (ENSTGUG00000009909)	TMEM128 (ENSTGUG00000009913)	LYAR (ENSTGUG00000009916)	ZBTB49 (ENSTGUG00000009920)	NSG1 (ENSTGUG00000009930)	STX18 (ENSTGUG00000009937)	MSX1 (ENSTGUG00000009947)	CYTL1 (ENSTGUG00000009949)	STK32B (ENSTGUG00000009953)	EVC2 (ENSTGUG00000009975)
Common canary	MODERN SPECIES	2	QDPR (ENSSCAG00000001462)	LDB2 (ENSSCAG00000001448) #7	TAPT1 (ENSSCAG00000001104) #8	PROM1 (ENSSCAG00000000963) #9	FGFBP2 (ENSSCAG00000000953) #10	FGFBP1 (ENSSCAG00000000946) #11	CD38 (ENSSCAG00000000937) #12	BST1 (ENSSCAG00000000932) #13	FBXL5 (ENSSCAG00000000915) #15	CC2D2A (ENSSCAG00000000790) #16	ENSSCAG00000000756	C1QTNF7 (ENSSCAG00000000750) #17	CPEB2 (ENSSCAG00000000742) #18	BOD1L1 (ENSSCAG00000000697) #19	RAB28 (ENSSCAG00000000688) #21	HS3ST1 (ENSSCAG00000000660) #22	ZNF518B (ENSSCAG00000000655) #24	WDR1 (ENSSCAG00000000629) #25	SLC2A9 (ENSSCAG00000000527) #27	DRD5 (ENSSCAG00000000486) #26	OTOP1 (ENSSCAG00000000479)	TMEM128 (ENSSCAG00000000452)	LYAR (ENSSCAG00000000445)	ZBTB49 (ENSSCAG00000000427)	NSG1 (ENSSCAG00000000422)	STX18 (ENSSCAG00000000340)	MSX1 (ENSSCAG00000000294)	CYTL1 (ENSSCAG00000000291)	ENSSCAG00000000287	STK32B (ENSSCAG00000000275)	EVC2 (ENSSCAG00000000226)
Medium ground finch	MODERN SPECIES		QDPR (ENSGFOG00000000896)	LDB2 (ENSGFOG00000000880) #7	TAPT1 (ENSGFOG00000000647) #8	PROM1 (ENSGFOG00000000527) #9	FGFBP2 (ENSGFOG00000000505) #10	FGFBP1 (ENSGFOG00000000500) #11	CD38 (ENSGFOG00000000497) #12	BST1 (ENSGFOG00000000489) #13	FBXL5 (ENSGFOG00000000478) #15	CC2D2A (ENSGFOG00000000441) #16	C1QTNF7 (ENSGFOG00000000436) #17	CPEB2 (ENSGFOG00000000433) #18	BOD1L1 (ENSGFOG00000000428) #19	RAB28 (ENSGFOG00000000423) #21	ENSGFOG00000000417	HS3ST1 (ENSGFOG00000000414) #22	ZNF518B (ENSGFOG00000000408) #24	WDR1 (ENSGFOG00000000397) #25
Flycatcher	MODERN SPECIES	22	ENSFALG00000009259 #7	ENSFALG00000023317 #7	TAPT1 (ENSFALG00000009267) #8	PROM1 (ENSFALG00000009278) #9	FGFBP2 (ENSFALG00000014686) #10	FGFBP1 (ENSFALG00000014708) #11	CD38 (ENSFALG00000009288) #12	BST1 (ENSFALG00000009305) #13	FBXL5 (ENSFALG00000009317) #15	CC2D2A (ENSFALG00000009323) #16	C1QTNF7 (ENSFALG00000009328) #17	CPEB2 (ENSFALG00000027574) #18	BOD1L1 (ENSFALG00000009340) #19	NKX3-2 (ENSFALG00000026941) #20	RAB28 (ENSFALG00000009347) #21	HS3ST1 (ENSFALG00000014725) #22	ENSFALG00000022853 #23	ENSFALG00000014741 #24	WDR1 (ENSFALG00000009356) #25	ENSFALG00000009381 #27	DRD5 (ENSFALG00000009387) #26	OTOP1 (ENSFALG00000009394)	TMEM128 (ENSFALG00000023993)	LYAR (ENSFALG00000009417)	ZBTB49 (ENSFALG00000009426)	NSG1 (ENSFALG00000009442)	STX18 (ENSFALG00000026510)	MSX1 (ENSFALG00000009464)	CYTL1 (ENSFALG00000009468)	STK32B (ENSFALG00000009476)	EVC2 (ENSFALG00000009488)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Japanese quail	MODERN SPECIES	22	LDB2 (ENSCJPG00005018404) #7	TAPT1 (ENSCJPG00005018406) #8	PROM1 (ENSCJPG00005018407) #9	FGFBP2 (ENSCJPG00005018408) #10	FGFBP1 (ENSCJPG00005018409) #11	CD38 (ENSCJPG00005018410) #12	BST1 (ENSCJPG00005018411) #13	FBXL5 (ENSCJPG00005018412) #15	CC2D2A (ENSCJPG00005018413) #16	C1QTNF7 (ENSCJPG00005018414) #17	CPEB2 (ENSCJPG00005018416) #18	ENSCJPG00005018425 #19	ENSCJPG00005018426 #19	NKX3-2 (ENSCJPG00005018427) #20	RAB28 (ENSCJPG00005018428) #21	HS3ST1 (ENSCJPG00005018434) #22	CLNK (ENSCJPG00005018436) #23	ZNF518B (ENSCJPG00005018438) #24	WDR1 (ENSCJPG00005018439) #25	SLC2A9 (ENSCJPG00005018441) #27	DRD5 (ENSCJPG00005018519) #26	OTOP1 (ENSCJPG00005018520)	TMEM128 (ENSCJPG00005018521)	LYAR (ENSCJPG00005018522)	ZBTB49 (ENSCJPG00005018523)	NSG1 (ENSCJPG00005018524)	STX18 (ENSCJPG00005018525)	MSX1 (ENSCJPG00005018526)	CYTL1 (ENSCJPG00005018527)	STK32B (ENSCJPG00005018528)	EVC2 (ENSCJPG00005018529)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Turkey	MODERN SPECIES	24	STK32B (ENSMGAG00000012722)	ENSMGAG00000018887	ENSMGAG00000012708	ENSMGAG00000012712	ENSMGAG00000012702	ENSMGAG00000012703	ZBTB49 (ENSMGAG00000012706)	OTOP1 (ENSMGAG00000012701)	ENSMGAG00000012697 #27	ENSMGAG00000012700 #26	ENSMGAG00000022219 #27	WDR1 (ENSMGAG00000012690) #25	ENSMGAG00000016617 #23	ENSMGAG00000012687 #24	ENSMGAG00000019461	ENSMGAG00000017053 #22	ENSMGAG00000021515 #21	ENSMGAG00000012664 #19	ENSMGAG00000017730 #19	ENSMGAG00000020226	ENSMGAG00000018675	ENSMGAG00000013059	ENSMGAG00000013057	ENSMGAG00000020247	ENSMGAG00000013051	ENSMGAG00000019205	ENSMGAG00000020055	ENSMGAG00000013044	NAT8L (ENSMGAG00000016877)	ENSMGAG00000013033	ENSMGAG00000017584
Chicken	MODERN SPECIES	33	ENSGALG00010011112	TAPT1 (ENSGALG00010011116) #8	PROM1 (ENSGALG00010010434) #9	FGFBP2 (ENSGALG00010010467) #10	FGFBP1 (ENSGALG00010010483) #11	CD38 (ENSGALG00010010505) #12	BST1 (ENSGALG00010010547) #13	FBXL5 (ENSGALG00010010585) #15	CC2D2A (ENSGALG00010010642) #16	C1QTNF7 (ENSGALG00010010655) #17	CPEB2 (ENSGALG00010010661) #18	BOD1L1 (ENSGALG00010009133) #19	NKX3-2 (ENSGALG00010010183) #20	RAB28 (ENSGALG00010009372) #21	ZNF518B (ENSGALG00010009441) #24	HS3ST1 (ENSGALG00010009497) #22	CLNK (ENSGALG00010009517) #23	WDR1 (ENSGALG00010009542) #25	SLC2A9 (ENSGALG00010010094) #27	DRD5 (ENSGALG00010010116) #26	OTOP1 (ENSGALG00010010134)	TMEM128 (ENSGALG00010009164)	LYAR (ENSGALG00010009173)	ZBTB49 (ENSGALG00010009190)	NSG1 (ENSGALG00010009216)	STX18 (ENSGALG00010009239)	MSX1 (ENSGALG00010011141)	STK32B (ENSGALG00010011187)	CYTL1 (ENSGALG00010011205)	EVC2 (ENSGALG00010011267)	EVC (ENSGALG00010011300)
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000160449 #22
Pink-footed goose	MODERN SPECIES	458																HS3ST1 (ENSABRG00000001529) #22
African ostrich	MODERN SPECIES	1016													ENSSCUG00000016084 #19	ENSSCUG00000016082 #19	RAB28 (ENSSCUG00000016079) #21	HS3ST1 (ENSSCUG00000016074) #22	ENSSCUG00000016069	ZNF518B (ENSSCUG00000016064) #24	WDR1 (ENSSCUG00000016060) #25	SLC2A9 (ENSSCUG00000016057) #27	DRD5 (ENSSCUG00000016053) #26	OTOP1 (ENSSCUG00000016052)	TMEM128 (ENSSCUG00000016050)	LYAR (ENSSCUG00000016048)	ZBTB49 (ENSSCUG00000016045)	NSG1 (ENSSCUG00000016043)	STX18 (ENSSCUG00000016038)	MSX1 (ENSSCUG00000016030)	CYTL1 (ENSSCUG00000016026)	STK32B (ENSSCUG00000016023)	EVC2 (ENSSCUG00000016018)
Australian saltwater crocodile	MODERN SPECIES	65	FGFBP2 (ENSCPRG00005004336) #10	FGFBP1 (ENSCPRG00005004334) #11	CD38 (ENSCPRG00005004324) #12	BST1 (ENSCPRG00005004317) #13	FBXL5 (ENSCPRG00005004306) #15	ENSCPRG00005004303	CC2D2A (ENSCPRG00005004300) #16	ENSCPRG00005004290	C1QTNF7 (ENSCPRG00005004289) #17	CPEB2 (ENSCPRG00005004275) #18	ENSCPRG00005004260	ENSCPRG00005004250 #19	ENSCPRG00005004241 #19	NKX3-2 (ENSCPRG00005004240) #20	ENSCPRG00005004232	HS3ST1 (ENSCPRG00005004206) #22	ENSCPRG00005004191	WDR1 (ENSCPRG00005003976) #25	SLC2A9 (ENSCPRG00005003940) #27	ENSCPRG00005003935	ENSCPRG00005003926	DRD5 (ENSCPRG00005003920) #26	OTOP1 (ENSCPRG00005003914)	TMEM128 (ENSCPRG00005003909)	LYAR (ENSCPRG00005003903)	ZBTB49 (ENSCPRG00005003899)	NSG1 (ENSCPRG00005003884)	STX18 (ENSCPRG00005003880)	MSX1 (ENSCPRG00005003860)	CYTL1 (ENSCPRG00005003847)	STK32B (ENSCPRG00005003830)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.`b	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.`b	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Abingdon island giant tortoise	MODERN SPECIES	176																HS3ST1 (ENSCABG00000017937) #22
Goode s thornscrub tortoise	MODERN SPECIES	19	QDPR (ENSGEVG00005016893)	LDB2 (ENSGEVG00005016780) #7	TAPT1 (ENSGEVG00005016748) #8	PROM1 (ENSGEVG00005016270) #9	FGFBP2 (ENSGEVG00005016212) #10	FGFBP1 (ENSGEVG00005016178) #11	CD38 (ENSGEVG00005016145) #12	BST1 (ENSGEVG00005015927) #13	FBXL5 (ENSGEVG00005015877) #15	CC2D2A (ENSGEVG00005015345) #16	C1QTNF7 (ENSGEVG00005015267) #17	CPEB2 (ENSGEVG00005015122) #18	BOD1L1 (ENSGEVG00005015052) #19	NKX3-2 (ENSGEVG00005014988) #20	ENSGEVG00005014960	HS3ST1 (ENSGEVG00005014929) #22	ENSGEVG00005014883 #23	ZNF518B (ENSGEVG00005014872) #24	WDR1 (ENSGEVG00005014838) #25	SLC2A9 (ENSGEVG00005014150) #27	DRD5 (ENSGEVG00005013886) #26	OTOP1 (ENSGEVG00005013762)	ENSGEVG00005013746	TMEM128 (ENSGEVG00005013720)	LYAR (ENSGEVG00005013667)	ENSGEVG00005013625	ZBTB49 (ENSGEVG00005013583)	NSG1 (ENSGEVG00005013517)	STX18 (ENSGEVG00005013472)	MSX1 (ENSGEVG00005013433)	CYTL1 (ENSGEVG00005013385)
Emydidae	ANCESTRAL SPECIES	1	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00990000211892	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.`b	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	877	ENSCPBG00000023245	ENSCPBG00000023244	SFTPB (ENSCPBG00000023243)	USP39 (ENSCPBG00000023242)	ENSCPBG00000023241	C2orf68 (ENSCPBG00000023240)	TMEM150A (ENSCPBG00000023238)	RNF181 (ENSCPBG00000023237)	VAMP5 (ENSCPBG00000023236)	VAMP8 (ENSCPBG00000023235)	GGCX (ENSCPBG00000023234)	MAT2A (ENSCPBG00000023233)	ENSCPBG00000023231	ENSCPBG00000023230	POLM (ENSCPBG00000023227)	ENSCPBG00000023224 #22	H2AZ2 (ENSCPBG00000023223)	PURB (ENSCPBG00000023221)	ENSCPBG00000023219	ENSCPBG00000023218	ACTR1B (ENSCPBG00000023217)	COX5B (ENSCPBG00000023216)	SEMA4C (ENSCPBG00000023214)	ANKRD39 (ENSCPBG00000023213)	ENSCPBG00000023212	CNNM3 (ENSCPBG00000023211)	CNNM4 (ENSCPBG00000023192)	LMAN2L (ENSCPBG00000023186)	ENSCPBG00000023183	ENSCPBG00000023178	KANSL3 (ENSCPBG00000023174)
painted turtle	MODERN SPECIES	735								CPEB2 (ENSCPBG00000005454) #18	ENSCPBG00000005501	ENSCPBG00000005514	BOD1L1 (ENSCPBG00000005528) #19	NKX3-2 (ENSCPBG00000005554) #20	RAB28 (ENSCPBG00000005572) #21	ENSCPBG00000005584	ENSCPBG00000005589	HS3ST1 (ENSCPBG00000005598) #22	ZNF518B (ENSCPBG00000005619) #24	WDR1 (ENSCPBG00000005630) #25	SLC2A9 (ENSCPBG00000005649) #27	DRD5 (ENSCPBG00000005669) #26	OTOP1 (ENSCPBG00000005678)	TMEM128 (ENSCPBG00000005684)	LYAR (ENSCPBG00000005694)	ZBTB49 (ENSCPBG00000005715)	NSG1 (ENSCPBG00000005741)	STX18 (ENSCPBG00000005749)	MSX1 (ENSCPBG00000005760)	CYTL1 (ENSCPBG00000005764)	STK32B (ENSCPBG00000005772)	ENSCPBG00000005777	EVC2 (ENSCPBG00000005781)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	18	ENSTMTG00000002968	ENSTMTG00000002971	ENSTMTG00000002983	ENSTMTG00000003023	ENSTMTG00000003042	ENSTMTG00000003052	ENSTMTG00000003064	RNF181 (ENSTMTG00000003075)	ENSTMTG00000003088	ENSTMTG00000003097	ENSTMTG00000003103	ENSTMTG00000003123	ENSTMTG00000003135	ENSTMTG00000003150	ENSTMTG00000003188	ENSTMTG00000003373 #22	H2AZ2 (ENSTMTG00000003395)	ENSTMTG00000003420	ENSTMTG00000003433	ENSTMTG00000003451	ENSTMTG00000003485	ENSTMTG00000003521	ENSTMTG00000003569	ENSTMTG00000003800	ENSTMTG00000003819	ENSTMTG00000003853	ENSTMTG00000003908	ENSTMTG00000003955	ENSTMTG00000003981	ENSTMTG00000004040	ENSTMTG00000004153
Three-toed box turtle	MODERN SPECIES	17	ENSTMTG00000000194	ENSTMTG00000000239	ENSTMTG00000000294	ENSTMTG00000000379	ENSTMTG00000000400	ENSTMTG00000000419	ENSTMTG00000000440	ENSTMTG00000000453	ENSTMTG00000000538	ENSTMTG00000000554	ENSTMTG00000000568	ENSTMTG00000000585	ENSTMTG00000000613	ENSTMTG00000000626	ENSTMTG00000000686	ENSTMTG00000000767 #22	ENSTMTG00000000775	ENSTMTG00000000788	ENSTMTG00000000796	ENSTMTG00000000808	ENSTMTG00000000818	ENSTMTG00000000838	ENSTMTG00000000853	ENSTMTG00000000879	ENSTMTG00000000892	ENSTMTG00000000911	ENSTMTG00000000930	ENSTMTG00000000943	ENSTMTG00000000978	ENSTMTG00000001123	ENSTMTG00000001216
Three-toed box turtle	MODERN SPECIES	26	LDB2 (ENSTMTG00000006627) #7	TAPT1 (ENSTMTG00000006647) #8	PROM1 (ENSTMTG00000006688) #9	FGFBP2 (ENSTMTG00000006970) #10	CD38 (ENSTMTG00000006997) #12	BST1 (ENSTMTG00000007026) #13	FBXL5 (ENSTMTG00000007053) #15	CC2D2A (ENSTMTG00000007097) #16	C1QTNF7 (ENSTMTG00000007238) #17	ENSTMTG00000007257	CPEB2 (ENSTMTG00000007278) #18	ENSTMTG00000007352	BOD1L1 (ENSTMTG00000007368) #19	NKX3-2 (ENSTMTG00000007387) #20	ENSTMTG00000007400	HS3ST1 (ENSTMTG00000007413) #22	ENSTMTG00000007420 #23	ZNF518B (ENSTMTG00000007432) #24	WDR1 (ENSTMTG00000007438) #25	SLC2A9 (ENSTMTG00000007455) #27	DRD5 (ENSTMTG00000007482) #26	TMEM128 (ENSTMTG00000007505)	LYAR (ENSTMTG00000007524)	ZBTB49 (ENSTMTG00000007562)	NSG1 (ENSTMTG00000007591)	STX18 (ENSTMTG00000007630)	MSX1 (ENSTMTG00000007738)	CYTL1 (ENSTMTG00000007759)	STK32B (ENSTMTG00000007831)	EVC2 (ENSTMTG00000007848)	EVC (ENSTMTG00000007885)
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1993														ENSPSIG00000006953	POLM (ENSPSIG00000005971)	ENSPSIG00000001212 #22	H2AZ2 (ENSPSIG00000005931)	ENSPSIG00000005794	COX5B (ENSPSIG00000016978)	ENSPSIG00000016971	ENSPSIG00000015731	CNNM3 (ENSPSIG00000015137)	ENSPSIG00000001203	LMAN2L (ENSPSIG00000014091)
Chinese turtle	MODERN SPECIES	1451														NKX3-2 (ENSPSIG00000012169) #20	ENSPSIG00000012725	HS3ST1 (ENSPSIG00000000891) #22	CLNK (ENSPSIG00000013228) #23	ZNF518B (ENSPSIG00000013251) #24	WDR1 (ENSPSIG00000013318) #25	SLC2A9 (ENSPSIG00000014593) #27	DRD5 (ENSPSIG00000015073) #26	OTOP1 (ENSPSIG00000015152)	TMEM128 (ENSPSIG00000015156)	LYAR (ENSPSIG00000015351)	ZBTB49 (ENSPSIG00000015554)	NSG1 (ENSPSIG00000015842)	STX18 (ENSPSIG00000016373)	MSX1 (ENSPSIG00000016608)	CYTL1 (ENSPSIG00000016686)	STK32B (ENSPSIG00000016748)	EVC2 (ENSPSIG00000016765)
Anura	ANCESTRAL SPECIES	2	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a #12	ENSGT00390000017291.b #13	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00990000209835	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350.f	ENSGT00940000159350.e	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490
Leishan spiny toad	MODERN SPECIES		BST1 (ENSLLEG00000001295) #13	FBXL5 (ENSLLEG00000001331) #15	ENSLLEG00000001406	CC2D2A (ENSLLEG00000001435) #16	ENSLLEG00000001582	C1QTNF7 (ENSLLEG00000001590) #17	CPEB2 (ENSLLEG00000001629) #18	ENSLLEG00000001697	ENSLLEG00000001705	ENSLLEG00000001714	ENSLLEG00000001729	BOD1L1 (ENSLLEG00000001770) #19	ENSLLEG00000001908	RAB28 (ENSLLEG00000001924) #21	ENSLLEG00000001978	HS3ST1 (ENSLLEG00000001984) #22	ENSLLEG00000001995 #23	ENSLLEG00000002004 #24	WDR1 (ENSLLEG00000002035) #25	SLC2A9 (ENSLLEG00000002143) #27	DRD5 (ENSLLEG00000002175) #26	ENSLLEG00000002183	ENSLLEG00000002200	OTOP1 (ENSLLEG00000002223)	TMEM128 (ENSLLEG00000002246)	LYAR (ENSLLEG00000002256)	ZBTB49 (ENSLLEG00000002279)	STX18 (ENSLLEG00000002305)	NSG1 (ENSLLEG00000002353)	ENSLLEG00000002371	ENSLLEG00000002380
Frog	MODERN SPECIES		qdpr (ENSXETG00000020341)	ldb2 (ENSXETG00000020339) #7	tapt1 (ENSXETG00000020338) #8	prom1 (ENSXETG00000020336) #9	fgfbp2 (ENSXETG00000020335) #10	fgfbp1 (ENSXETG00000020334) #11	ENSXETG00000041997	cd38 (ENSXETG00000034214) #12	fbxl5 (ENSXETG00000020331) #15	cc2d2a (ENSXETG00000032891) #16	c1qtnf7 (ENSXETG00000020325) #17	cpeb2 (ENSXETG00000020324) #18	bod1l1 (ENSXETG00000036067) #19	nkx3-2 (ENSXETG00000037748)	rab28 (ENSXETG00000026677)	hs3st1 (ENSXETG00000006969) #22	ENSXETG00000047845 #23	ENSXETG00000035840	ENSXETG00000044939	znf518b (ENSXETG00000027230) #24	wdr1 (ENSXETG00000000629) #25	slc2a15a (ENSXETG00000015992) #27	drd5 (ENSXETG00000047523) #26	ENSXETG00000047646	otop1.2 (ENSXETG00000041367)	otop1 (ENSXETG00000016028)	svip (ENSXETG00000016036)	lyar (ENSXETG00000016038)	zbtb49 (ENSXETG00000016041)	nsg1 (ENSXETG00000038539)	stx18 (ENSXETG00000016051)
Coelacanth	MODERN SPECIES	498																HS3ST1 (ENSLACG00000004982) #22	ENSLACG00000013946 #24	WDR1 (ENSLACG00000014204) #25	SLC2A9 (ENSLACG00000022502) #27	ENSLACG00000015119
Actinopterygii	ANCESTRAL SPECIES	20	ENSGT00390000005639.a.a #7	ENSGT00390000010628 #8	ENSGT00530000063586.b #9	ENSGT00940000154372.a.a #10	ENSGT00940000154372.a.b #11	ENSGT00390000017291.a.e #12	ENSGT00390000017291.a.f #12	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Reedfish	MODERN SPECIES	13	qdprb.4 (ENSECRG00000003330)	ldb2a (ENSECRG00000003347) #7	tapt1b (ENSECRG00000003379) #8	prom1b (ENSECRG00000003446) #9	fgfbp2b (ENSECRG00000003529) #10	ENSECRG00000003538 #11	CD38 (ENSECRG00000003552) #12	fbxl5 (ENSECRG00000003565) #15	CC2D2A (ENSECRG00000003589) #16	CC2D2A (ENSECRG00000003621) #16	C1QTNF7 (ENSECRG00000003634) #17	CPEB2 (ENSECRG00000003646) #18	ENSECRG00000003675 #19	nkx3-2 (ENSECRG00000003703) #20	RAB28 (ENSECRG00000003711) #21	HS3ST1 (ENSECRG00000003716) #22	ENSECRG00000003719	CLNK (ENSECRG00000003727) #23	ENSECRG00000003740 #24	WDR1 (ENSECRG00000003749) #25	SLC2A9 (ENSECRG00000003759) #27	ENSECRG00000003770	OTOP1 (ENSECRG00000003782)	ENSECRG00000003800	TMEM128 (ENSECRG00000003805)	lyar (ENSECRG00000003810)	zbtb49 (ENSECRG00000003816)	NSG1 (ENSECRG00000003820)	stx18 (ENSECRG00000003825)	MSX1 (ENSECRG00000003832)	CYTL1 (ENSECRG00000003835)
Neopterygii	ANCESTRAL SPECIES	35						ENSGT00390000017291.a.e #12	ENSGT00390000017291.a.f #12	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT01030000235096	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Spotted gar	MODERN SPECIES	670	SEL1L3 (ENSLOCG00000009749)	ENSLOCG00000009766	ENSLOCG00000018032	prdm5 (ENSLOCG00000009778)	ndnf (ENSLOCG00000009792)	TNIP3 (ENSLOCG00000009803)	CD38 (ENSLOCG00000009818) #12	CD38 (ENSLOCG00000009822) #12	fbxl5 (ENSLOCG00000009829) #15	CC2D2A (ENSLOCG00000009843) #16	C1QTNF7 (ENSLOCG00000009865) #17	CPEB2 (ENSLOCG00000009876) #18	ENSLOCG00000009884 #19	nkx3-2 (ENSLOCG00000009892) #20	ENSLOCG00000009898	HS3ST1 (ENSLOCG00000009907) #22	ENSLOCG00000009912 #23	ENSLOCG00000009916 #24	WDR1 (ENSLOCG00000009921) #25	SLC2A9 (ENSLOCG00000009930) #27	ENSLOCG00000018034	OTOP1 (ENSLOCG00000009946)	TMEM128 (ENSLOCG00000009955)	lyar (ENSLOCG00000009963)	zbtb49 (ENSLOCG00000009974)	NSG1 (ENSLOCG00000009986)	stx18 (ENSLOCG00000009998)	MSX1 (ENSLOCG00000010008)	ENSLOCG00000010013	CYTL1 (ENSLOCG00000010022)	STK32B (ENSLOCG00000010032)
Osteoglossocephalai	ANCESTRAL SPECIES	181												ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Osteoglossiformes	ANCESTRAL SPECIES	89		ENSGT00390000002398	ENSGT00390000005197.a	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b.k	ENSGT00940000157221	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000155857.e	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
P. kingsleyae	MODERN SPECIES	507																HS3ST1 (ENSPKIG00000024125) #22	ENSPKIG00000024102 #23	ENSPKIG00000024092 #24	WDR1 (ENSPKIG00000024088) #25	WDR1 (ENSPKIG00000024077) #25
Asian bonytongue	MODERN SPECIES	2	ENSSFOG00015028397	smim20 (ENSSFOG00015006459)	rbpjb (ENSSFOG00015026300)	CCKAR (ENSSFOG00015033093)	tbc1d19 (ENSSFOG00015006278)	STIM2 (ENSSFOG00015006168)	PCDH7 (ENSSFOG00015006133)	ENSSFOG00015006096	NWD2 (ENSSFOG00015006062)	zgc:194930 (ENSSFOG00015006057)	rell1 (ENSSFOG00015024304)	nkx3-2 (ENSSFOG00015030886) #20	RAB28 (ENSSFOG00015025065) #21	ENSSFOG00015028244	ENSSFOG00015025740	HS3ST1 (ENSSFOG00015005823) #22	ENSSFOG00015005790 #24	WDR1 (ENSSFOG00015005746) #25	SLC2A9 (ENSSFOG00015005679) #27	ENSSFOG00015030232	OTOP1 (ENSSFOG00015024418)	TMEM128 (ENSSFOG00015005582)	lyar (ENSSFOG00015028497)	zbtb49 (ENSSFOG00015027609)	NSG1 (ENSSFOG00015005540)	stx18 (ENSSFOG00015005528)	MSX1 (ENSSFOG00015028969)	CYTL1 (ENSSFOG00015005509)	STK32B (ENSSFOG00015005434)	EVC2 (ENSSFOG00015005412)	EVC (ENSSFOG00015026912)
Clupeocephala	ANCESTRAL SPECIES	186	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT00390000014827	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000164716.C	ENSGT00940000161623	ENSGT00940000160490	ENSGT00940000154127.A
Euteleosteomorpha	ANCESTRAL SPECIES	9	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT01060000248608.b	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a
Acanthomorphata	ANCESTRAL SPECIES	1	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00950000182968.d.b.a	ENSGT01030000234530.a.d	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT01030000234530.a.c.b.a.b.s	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00940000170413.A	ENSGT01030000234530.a.c.b.a.b.s	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.s.b.a.a.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	17			ENSGT01030000234530.a.d.e.b.b.g.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	24				ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Haplochromini	ANCESTRAL SPECIES	14				ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Burton s mouthbrooder	MODERN SPECIES	450		ENSHBUG00000007143	ENSHBUG00000007127	gpc2 (ENSHBUG00000007118)	ENSHBUG00000007105	mcm7 (ENSHBUG00000007062)	ENSHBUG00000007006	COPS6 (ENSHBUG00000007000)	ENSHBUG00000006971	aurkb (ENSHBUG00000006934)	ENSHBUG00000006778 #19	ENSHBUG00000006705	nkx3-2 (ENSHBUG00000006681) #20	RAB28 (ENSHBUG00000006668) #21	ENSHBUG00000006628	HS3ST1 (ENSHBUG00000006610) #22	ENSHBUG00000006599 #23	ENSHBUG00000006585	ENSHBUG00000006579 #24	gsr (ENSHBUG00000006561)	slc30a9 (ENSHBUG00000006489)	GRXCR1 (ENSHBUG00000006390)	atp8a1 (ENSHBUG00000006347)	shisa3 (ENSHBUG00000006187)	BEND4 (ENSHBUG00000006173)	ENSHBUG00000006159	sfxn5b (ENSHBUG00000006150)	smyd5 (ENSHBUG00000006142)	ENSHBUG00000006093	SLC4A11 (ENSHBUG00000006071)	ENSHBUG00000005967
Haplochromini_A	ANCESTRAL SPECIES	13					ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Haplochromini_B	ANCESTRAL SPECIES	7					ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Zebra mbuna	MODERN SPECIES	1102				ITGA6 (ENSMZEG00005009507)	gpc2 (ENSMZEG00005009495)	ENSMZEG00005009357	mcm7 (ENSMZEG00005009307)	ENSMZEG00005009293	COPS6 (ENSMZEG00005009278)	ENSMZEG00005009261	aurkb (ENSMZEG00005009240)	ENSMZEG00005009221 #19	nkx3-2 (ENSMZEG00005009214) #20	RAB28 (ENSMZEG00005009186) #21	ENSMZEG00005009148	HS3ST1 (ENSMZEG00005009121) #22	ENSMZEG00005009115 #24	gsr (ENSMZEG00005009098)	slc30a9 (ENSMZEG00005009078)	GRXCR1 (ENSMZEG00005009028)	atp8a1 (ENSMZEG00005008880)	shisa3 (ENSMZEG00005008844)	BEND4 (ENSMZEG00005008839)	ENSMZEG00005008832	sfxn5b (ENSMZEG00005008743)	smyd5 (ENSMZEG00005008689)	ENSMZEG00005008671	SLC4A11 (ENSMZEG00005008613)	glra4a (ENSMZEG00005008585)	gla (ENSMZEG00005008574)	rpl36a (ENSMZEG00005008556)
Eastern happy	MODERN SPECIES	11	ENSACLG00000004246	ITGA6 (ENSACLG00000004103)	gpc2 (ENSACLG00000004061)	ENSACLG00000003974	mcm7 (ENSACLG00000003872)	ENSACLG00000003861	COPS6 (ENSACLG00000003834)	ENSACLG00000003817	aurkb (ENSACLG00000003796)	ENSACLG00000003755 #19	ENSACLG00000003749	ENSACLG00000003745	nkx3-2 (ENSACLG00000003738) #20	RAB28 (ENSACLG00000003712) #21	ENSACLG00000003707	HS3ST1 (ENSACLG00000003675) #22	ENSACLG00000003655 #23	ENSACLG00000003648	ENSACLG00000003645	ENSACLG00000003641 #24	gsr (ENSACLG00000003593)	slc30a9 (ENSACLG00000003469)	GRXCR1 (ENSACLG00000003449)	atp8a1 (ENSACLG00000003204)	shisa3 (ENSACLG00000003177)	BEND4 (ENSACLG00000003168)	ENSACLG00000003152	sfxn5b (ENSACLG00000003055)	smyd5 (ENSACLG00000002980)	ENSACLG00000002806	SLC4A11 (ENSACLG00000002708)
P. nyererei	MODERN SPECIES	303			ENSPNYG00000007436	ENSPNYG00000007449	gpc2 (ENSPNYG00000007469)	ENSPNYG00000007495	ENSPNYG00000007513	mcm7 (ENSPNYG00000007530)	ENSPNYG00000007635	COPS6 (ENSPNYG00000007653)	ENSPNYG00000007697	aurkb (ENSPNYG00000007748)	ENSPNYG00000007865 #19	nkx3-2 (ENSPNYG00000007878) #20	RAB28 (ENSPNYG00000007910) #21	HS3ST1 (ENSPNYG00000007916) #22	ENSPNYG00000007924	ENSPNYG00000007930 #24	gsr (ENSPNYG00000007948)	slc30a9 (ENSPNYG00000008049)	GRXCR1 (ENSPNYG00000008137)	atp8a1 (ENSPNYG00000008194)	shisa3 (ENSPNYG00000008296)	BEND4 (ENSPNYG00000008370)	ENSPNYG00000008395	sfxn5b (ENSPNYG00000008431)	smyd5 (ENSPNYG00000008565)	ENSPNYG00000008659	SLC4A11 (ENSPNYG00000008759)	ENSPNYG00000008819	ENOX2 (ENSPNYG00000008872)
Lyretail cichlid	MODERN SPECIES	547				ENSNBRG00000024378	ENSNBRG00000024379	gpc2 (ENSNBRG00000024380)	ENSNBRG00000024381	mcm7 (ENSNBRG00000024382)	ENSNBRG00000024383	COPS6 (ENSNBRG00000024388)	ENSNBRG00000024389	aurkb (ENSNBRG00000024390)	ENSNBRG00000024391 #19	nkx3-2 (ENSNBRG00000024392) #20	RAB28 (ENSNBRG00000024393) #21	HS3ST1 (ENSNBRG00000024394) #22
Nile tilapia	MODERN SPECIES	11	ENSONIG00000038873	ENSONIG00000031686	ENSONIG00000002343	ENSONIG00000002344	gpc2 (ENSONIG00000002348)	ENSONIG00000028895	ENSONIG00000042159	mcm7 (ENSONIG00000002357)	ENSONIG00000030352	COPS6 (ENSONIG00000002367)	ENSONIG00000002370	aurkb (ENSONIG00000041999)	ENSONIG00000032183 #19	nkx3-2 (ENSONIG00000041276) #20	RAB28 (ENSONIG00000002380) #21	HS3ST1 (ENSONIG00000020857) #22	ENSONIG00000040942 #23	ENSONIG00000034441	ENSONIG00000031896	ENSONIG00000002383	ENSONIG00000035337	ENSONIG00000032053 #23	ENSONIG00000043013 #24	gsr (ENSONIG00000002384)	slc30a9 (ENSONIG00000002389)	GRXCR1 (ENSONIG00000002391)	atp8a1 (ENSONIG00000002392)	shisa3 (ENSONIG00000027395)	BEND4 (ENSONIG00000002407)	ENSONIG00000033867	ENSONIG00000034446
Midas cichlid	MODERN SPECIES	58																HS3ST1 (ENSACIG00000019847) #22	ENSACIG00000019854 #24	gsr (ENSACIG00000019866)	slc30a9 (ENSACIG00000019889)	GRXCR1 (ENSACIG00000019961)	ENSACIG00000019977	ENSACIG00000019982	ATP8A1 (ENSACIG00000019988)	shisa3 (ENSACIG00000020032)	BEND4 (ENSACIG00000020037)	ENSACIG00000020052	sfxn5b (ENSACIG00000020072)
Pomacentridae	ANCESTRAL SPECIES	4	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Bicolor damselfish	MODERN SPECIES	258	ENSSPAG00000003553	ENSSPAG00000003538	ENSSPAG00000003530	ENSSPAG00000003507	gpc2 (ENSSPAG00000003121)	ENSSPAG00000003046	ENSSPAG00000003027	mcm7 (ENSSPAG00000002973)	ENSSPAG00000002955	COPS6 (ENSSPAG00000002910)	ENSSPAG00000002899	aurkb (ENSSPAG00000002883)	ENSSPAG00000002862 #19	nkx3-2 (ENSSPAG00000002841) #20	ENSSPAG00000002809	HS3ST1 (ENSSPAG00000002799) #22	ENSSPAG00000002771 #23	ENSSPAG00000002764 #24	gsr (ENSSPAG00000002739)	slc30a9 (ENSSPAG00000002544)	slc30a9 (ENSSPAG00000002423)	GRXCR1 (ENSSPAG00000002373)	atp8a1 (ENSSPAG00000002132)	shisa3 (ENSSPAG00000002103)	BEND4 (ENSSPAG00000002083)	ENSSPAG00000002077	sfxn5b (ENSSPAG00000002052)	smyd5 (ENSSPAG00000002007)	ENSSPAG00000001919	ENSSPAG00000001890	SLC4A11 (ENSSPAG00000001872)
Pomacentridae_A	ANCESTRAL SPECIES	20	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT00940000162676.a.a	ENSGT00950000182968.d.b.a.a.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000165013.b.b	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Spiny chromis	MODERN SPECIES	366																HS3ST1 (ENSAPOG00000001367) #22	ENSAPOG00000001372	ENSAPOG00000000008 #24	gsr (ENSAPOG00000001383)	slc30a9 (ENSAPOG00000001406)	GRXCR1 (ENSAPOG00000001421)	atp8a1 (ENSAPOG00000001466)	shisa3 (ENSAPOG00000001485)	BEND4 (ENSAPOG00000001490)	ENSAPOG00000001495	sfxn5b (ENSAPOG00000001501)	smyd5 (ENSAPOG00000001516)	ENSAPOG00000001532
Amphiprion	ANCESTRAL SPECIES	17	ENSGT01030000234530.a.c.b.a.b.t.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000165013.b.b	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000154669.b.b.a.a.j.a	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Clown anemonefish	MODERN SPECIES	3350												ENSAOCG00000002231 #19	nkx3-2 (ENSAOCG00000017557) #20	RAB28 (ENSAOCG00000017542) #21	ENSAOCG00000017518	HS3ST1 (ENSAOCG00000017496) #22
Orange clownfish	MODERN SPECIES	4	ENSAPEG00000003229	ENSAPEG00000003254	ENSAPEG00000003274	ITGA6 (ENSAPEG00000003294)	ENSAPEG00000003444	ENSAPEG00000003475	mcm7 (ENSAPEG00000003656)	ENSAPEG00000003720	COPS6 (ENSAPEG00000003738)	aurkb (ENSAPEG00000003753)	ENSAPEG00000003785	ENSAPEG00000003803 #19	nkx3-2 (ENSAPEG00000003825) #20	RAB28 (ENSAPEG00000003839) #21	ENSAPEG00000003881	HS3ST1 (ENSAPEG00000003896) #22	ENSAPEG00000003907 #23	ENSAPEG00000003923 #24	gsr (ENSAPEG00000003926)	slc30a9 (ENSAPEG00000003940)	GRXCR1 (ENSAPEG00000003973)	ENSAPEG00000003992	ATP8A1 (ENSAPEG00000004005)	shisa3 (ENSAPEG00000004107)	BEND4 (ENSAPEG00000004120)	ENSAPEG00000004142	sfxn5b (ENSAPEG00000004164)	smyd5 (ENSAPEG00000004205)	ENSAPEG00000004279	SLC4A11 (ENSAPEG00000004401)	ENSAPEG00000004466
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT01030000234530.a.c.b.a.b.t.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Oryzias	ANCESTRAL SPECIES	33	ENSGT00940000173984.r.a	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Oryzias_a	ANCESTRAL SPECIES	19	ENSGT01030000234530.a.c.b.b.a.b.b	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00950000183173.S.ab.d.b.s.a
Chinese medaka	MODERN SPECIES	385																HS3ST1 (ENSOSIG00000003720) #22	ENSOSIG00000003711 #23	ENSOSIG00000003703 #24	gsr (ENSOSIG00000003675)	slc30a9 (ENSOSIG00000018176)	GRXCR1 (ENSOSIG00000018156)	ATP8A1 (ENSOSIG00000018061)	shisa3 (ENSOSIG00000018044)	BEND4 (ENSOSIG00000018040)	ENSOSIG00000018035	sfxn5b (ENSOSIG00000017897)	smyd5 (ENSOSIG00000017863)
Japanese Medaka HdrR	MODERN SPECIES	1	ENSORLG00000029652	ENSORLG00000023542	ENSORLG00000000441	gpc2 (ENSORLG00000000476)	ENSORLG00000000491	mcm7 (ENSORLG00000000527)	ENSORLG00000000538	COPS6 (ENSORLG00000000554)	ENSORLG00000029587	aurkb (ENSORLG00000000578)	ENSORLG00000000588 #19	ENSORLG00000022787	nkx3-2 (ENSORLG00000029707) #20	ENSORLG00000000606	ENSORLG00000022874	HS3ST1 (ENSORLG00000030296) #22	ENSORLG00000024711 #23	ENSORLG00000022674 #24	gsr (ENSORLG00000000624)	slc30a9 (ENSORLG00000000650)	GRXCR1 (ENSORLG00000000654)	atp8a1 (ENSORLG00000029128)	shisa3 (ENSORLG00000025396)	BEND4 (ENSORLG00000028426)	ENSORLG00000000677	sfxn5b (ENSORLG00000000692)	smyd5 (ENSORLG00000000713)	ENSORLG00000029543	SLC4A11 (ENSORLG00000000723)	ENSORLG00000024170	ENSORLG00000027302
Oryzias_b	ANCESTRAL SPECIES	23	ENSGT00940000173984.r.a	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Javanese ricefish	MODERN SPECIES	1	ENSOJAG00000012563	ENSOJAG00000012531	ENSOJAG00000012515	ENSOJAG00000012457	gpc2 (ENSOJAG00000012393)	ENSOJAG00000012382	mcm7 (ENSOJAG00000011699)	ENSOJAG00000011657	COPS6 (ENSOJAG00000011556)	ENSOJAG00000011547	aurkb (ENSOJAG00000011520)	ENSOJAG00000011516 #19	ENSOJAG00000011497	nkx3-2 (ENSOJAG00000011493) #20	RAB28 (ENSOJAG00000011456) #21	HS3ST1 (ENSOJAG00000011421) #22	ENSOJAG00000011404 #23	ENSOJAG00000011396 #24	gsr (ENSOJAG00000011056)	slc30a9 (ENSOJAG00000010686)	GRXCR1 (ENSOJAG00000010661)	ENSOJAG00000010627	atp8a1 (ENSOJAG00000006376)	shisa3 (ENSOJAG00000020794)	BEND4 (ENSOJAG00000020769)	ENSOJAG00000020760	sfxn5b (ENSOJAG00000020686)	smyd5 (ENSOJAG00000020471)	ENSOJAG00000020419	SLC4A11 (ENSOJAG00000020279)	ENSOJAG00000020265
Indian medaka	MODERN SPECIES	16	ENSOMEG00000012300	ENSOMEG00000012328	ENSOMEG00000012340	ENSOMEG00000012357	ENSOMEG00000000696	gpc2 (ENSOMEG00000012394)	ENSOMEG00000012446	mcm7 (ENSOMEG00000012495)	ENSOMEG00000012520	COPS6 (ENSOMEG00000012556)	ENSOMEG00000012574	ENSOMEG00000012592 #19	nkx3-2 (ENSOMEG00000012613) #20	RAB28 (ENSOMEG00000012673) #21	ENSOMEG00000012725	HS3ST1 (ENSOMEG00000012752) #22	ENSOMEG00000012762	ENSOMEG00000012767 #24	gsr (ENSOMEG00000012789)	slc30a9 (ENSOMEG00000012829)	GRXCR1 (ENSOMEG00000012857)	atp8a1 (ENSOMEG00000012984)	shisa3 (ENSOMEG00000013007)	BEND4 (ENSOMEG00000013018)	ENSOMEG00000013031	sfxn5b (ENSOMEG00000013084)	smyd5 (ENSOMEG00000013141)	ENSOMEG00000013174	SLC4A11 (ENSOMEG00000013246)	ENSOMEG00000013320	ENOX2 (ENSOMEG00000013432)
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000168577	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015002143	GPC6L (ENSNFUG00015002103)	ENSNFUG00015002087	ENSNFUG00015002084	ENSNFUG00015002082	MCM7 (ENSNFUG00015002038)	ENSNFUG00015002021	COPS6 (ENSNFUG00015002003)	ENSNFUG00015001968	aurkb (ENSNFUG00015001956)	ENSNFUG00015001950 #19	ENSNFUG00015001944	nkx3-2 (ENSNFUG00015001934) #20	ENSNFUG00015001917	ENSNFUG00015001883	HS3ST1 (ENSNFUG00015001881) #22	ENSNFUG00015001879	ENSNFUG00015001859 #23	ZNF518B (ENSNFUG00015001851) #24	slc30a9 (ENSNFUG00015001548)	GRXCR1 (ENSNFUG00015001476)	ENSNFUG00015001472	atp8a1 (ENSNFUG00015001314)	SHISA3 (ENSNFUG00015001284)	BEND4 (ENSNFUG00015001278)	ENSNFUG00015001273	RAB11FIP5 (ENSNFUG00015001265)	SFXN5B (ENSNFUG00015001218)	SMYD5 (ENSNFUG00015001001)	ENSNFUG00015000946	ENSNFUG00015000943
Mangrove rivulus	MODERN SPECIES	10	ENSKMAG00000018816	ENSKMAG00000018834	gpc2 (ENSKMAG00000018862)	ENSKMAG00000018881	ENSKMAG00000018900	ENSKMAG00000018916	ENSKMAG00000018936	mcm7 (ENSKMAG00000018958)	ENSKMAG00000019054	COPS6 (ENSKMAG00000019077)	ENSKMAG00000019102	aurkb (ENSKMAG00000019109)	ENSKMAG00000019121 #19	nkx3-2 (ENSKMAG00000019133) #20	ENSKMAG00000019139	HS3ST1 (ENSKMAG00000019173) #22	ENSKMAG00000019183 #24	gsr (ENSKMAG00000019190)	slc30a9 (ENSKMAG00000019209)	GRXCR1 (ENSKMAG00000019248)	ATP8A1 (ENSKMAG00000019276)	shisa3 (ENSKMAG00000019340)	BEND4 (ENSKMAG00000019352)	ENSKMAG00000019366	sfxn5b (ENSKMAG00000019389)	smyd5 (ENSKMAG00000019460)	ENSKMAG00000019509	SLC4A11 (ENSKMAG00000019535)	ENSKMAG00000019574	ENOX2 (ENSKMAG00000019588)	ENSKMAG00000019645
Cyprinodontoidei	ANCESTRAL SPECIES	23	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
NAME_4	ANCESTRAL SPECIES	168	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a.ab	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00390000005067.a	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b
Sheepshead minnow	MODERN SPECIES	511	ENSCVAG00000001757	ENSCVAG00000001749	ENSCVAG00000001735	ENSCVAG00000001728	ENSCVAG00000000069	gpc2 (ENSCVAG00000001724)	ENSCVAG00000001717	ENSCVAG00000001715	mcm7 (ENSCVAG00000000067)	ENSCVAG00000001703	ENSCVAG00000001698	aurkb (ENSCVAG00000001696)	ENSCVAG00000001692 #19	nkx3-2 (ENSCVAG00000001687) #20	ENSCVAG00000001684	HS3ST1 (ENSCVAG00000001677) #22	ENSCVAG00000001675	ENSCVAG00000001673 #24	gsr (ENSCVAG00000001672)	slc30a9 (ENSCVAG00000001662)	GRXCR1 (ENSCVAG00000001645)
Mummichog	MODERN SPECIES	431														nkx3-2 (ENSFHEG00000022173) #20	RAB28 (ENSFHEG00000022222) #21	HS3ST1 (ENSFHEG00000022233) #22	ENSFHEG00000022237 #24
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i.a	ENSGT01030000234530.a.d.e.b.b.i.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
Platyfish	MODERN SPECIES	15	ENSXMAG00000029048	ENSXMAG00000025629	ENSXMAG00000028811	ENSXMAG00000016450	ENSXMAG00000021486	gpc2 (ENSXMAG00000016419)	ENSXMAG00000025123	mcm7 (ENSXMAG00000016334)	ENSXMAG00000022228	COPS6 (ENSXMAG00000021939)	ENSXMAG00000016307	aurkb (ENSXMAG00000016292)	ENSXMAG00000016291 #19	nkx3-2 (ENSXMAG00000023793) #20	ENSXMAG00000016277	HS3ST1 (ENSXMAG00000026035) #22	ENSXMAG00000016271 #23	ENSXMAG00000021608 #24	gsr (ENSXMAG00000016221)	slc30a9 (ENSXMAG00000016198)	GRXCR1 (ENSXMAG00000016197)	atp8a1 (ENSXMAG00000016159)	shisa3 (ENSXMAG00000022521)	BEND4 (ENSXMAG00000016156)	ENSXMAG00000021113	sfxn5b (ENSXMAG00000016117)	smyd5 (ENSXMAG00000026624)	ENSXMAG00000021708	ENSXMAG00000016091	SLC4A11 (ENSXMAG00000016079)	ENSXMAG00000019596
Poecilia	ANCESTRAL SPECIES	33	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i.a	ENSGT01030000234530.a.d.e.b.b.i.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a
NAME_6	ANCESTRAL SPECIES	98	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i.a	ENSGT01030000234530.a.d.e.b.b.i.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354.j	ENSGT00940000158980.nb	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110.bb	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a
Sailfin molly	MODERN SPECIES	124																HS3ST1 (ENSPLAG00000013481) #22	ENSPLAG00000013476	ENSPLAG00000013469	cnot3b (ENSPLAG00000013457)	ccdc106b (ENSPLAG00000013385)	tmem238a (ENSPLAG00000013376)	rcvrn3 (ENSPLAG00000013369)	si:ch211-232m10.6 (ENSPLAG00000013355)	epn1b (ENSPLAG00000013318)	necap1 (ENSPLAG00000013310)	ENSPLAG00000013301	ENSPLAG00000013267	ENSPLAG00000013223	ENSPLAG00000013217	ENSPLAG00000000546	ENSPLAG00000013163
Amazon molly	MODERN SPECIES	481	ENSPFOG00000001461	gpc2 (ENSPFOG00000001609)	ENSPFOG00000001981	mcm7 (ENSPFOG00000002340)	ENSPFOG00000002504	COPS6 (ENSPFOG00000002531)	COPS6 (ENSPFOG00000002582)	ENSPFOG00000002646	aurkb (ENSPFOG00000002658)	ENSPFOG00000002769 #19	ENSPFOG00000002788	aurkb (ENSPFOG00000002811)	ENSPFOG00000002857 #19	nkx3-2 (ENSPFOG00000002882) #20	ENSPFOG00000002910	HS3ST1 (ENSPFOG00000020423) #22	ENSPFOG00000003039 #23	ENSPFOG00000020424 #24	gsr (ENSPFOG00000003063)	slc30a9 (ENSPFOG00000003213)	GRXCR1 (ENSPFOG00000003399)	ATP8A1 (ENSPFOG00000003471)	shisa3 (ENSPFOG00000004262)	BEND4 (ENSPFOG00000004287)	ENSPFOG00000023820	sfxn5b (ENSPFOG00000004348)	smyd5 (ENSPFOG00000004537)	ENSPFOG00000004740	SLC4A11 (ENSPFOG00000004866)
Guppy	MODERN SPECIES	440	ENSPREG00000014178	ENSPREG00000014166	ENSPREG00000014155	ENSPREG00000014136	gpc2 (ENSPREG00000014107)	ENSPREG00000014094	mcm7 (ENSPREG00000014071)	ENSPREG00000014058	ENSPREG00000014042	COPS6 (ENSPREG00000014024)	aurkb (ENSPREG00000013954)	ENSPREG00000013936 #19	ENSPREG00000013906 #19	nkx3-2 (ENSPREG00000013893) #20	ENSPREG00000013861	HS3ST1 (ENSPREG00000013838) #22	ENSPREG00000013830 #24	gsr (ENSPREG00000013744)	slc30a9 (ENSPREG00000013639)	GRXCR1 (ENSPREG00000013612)	atp8a1 (ENSPREG00000013400)	shisa3 (ENSPREG00000013340)	BEND4 (ENSPREG00000013330)	ENSPREG00000013312	sfxn5b (ENSPREG00000013279)	smyd5 (ENSPREG00000013256)	ENSPREG00000013246	SLC4A11 (ENSPREG00000013187)	ENSPREG00000013166	ENOX2 (ENSPREG00000013119)	ENSPREG00000012920
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Eupercaria	ANCESTRAL SPECIES	12	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000162676.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.n	ENSGT00940000155470.a	ENSGT00440000037505.b
Tetraodon	MODERN SPECIES		ENSTNIG00000006201	slit3 (ENSTNIG00000015721)	ENSTNIG00000015722	ENSTNIG00000015723	ENSTNIG00000001126	ITGA6 (ENSTNIG00000015724)	gpc2 (ENSTNIG00000015725)	mcm7 (ENSTNIG00000015726)	ENSTNIG00000015727	COPS6 (ENSTNIG00000015728)	ENSTNIG00000015729	aurkb (ENSTNIG00000015730)	ENSTNIG00000015731 #19	nkx3-2 (ENSTNIG00000015732) #20	RAB28 (ENSTNIG00000015733) #21	HS3ST1 (ENSTNIG00000000767) #22	gsr (ENSTNIG00000015734)	slc30a9 (ENSTNIG00000015735)	GRXCR1 (ENSTNIG00000015736)	atp8a1 (ENSTNIG00000015737)	BEND4 (ENSTNIG00000015738)	ENSTNIG00000015739	sfxn5b (ENSTNIG00000015740)	smyd5 (ENSTNIG00000015741)	ENSTNIG00000015742	SLC4A11 (ENSTNIG00000015743)	ENSTNIG00000015744	ENSTNIG00000015745	med12 (ENSTNIG00000015746)	MARS2 (ENSTNIG00000015747)	zgc:101583 (ENSTNIG00000015748)
Fugu	MODERN SPECIES	5	ENSTRUG00000029980	ENSTRUG00000003304	ENSTRUG00000027943	ENSTRUG00000026871	gpc2 (ENSTRUG00000014813)	ENSTRUG00000014625	mcm7 (ENSTRUG00000014527)	ENSTRUG00000014522	COPS6 (ENSTRUG00000014492)	ENSTRUG00000021019	aurkb (ENSTRUG00000014460)	ENSTRUG00000002738 #19	ENSTRUG00000014438	RAB28 (ENSTRUG00000023129) #21	ENSTRUG00000026560	HS3ST1 (ENSTRUG00000019771) #22	ENSTRUG00000027178 #24	gsr (ENSTRUG00000014303)	slc30a9 (ENSTRUG00000014154)	GRXCR1 (ENSTRUG00000014150)	atp8a1 (ENSTRUG00000013851)	shisa3 (ENSTRUG00000019963)	BEND4 (ENSTRUG00000013834)	ENSTRUG00000022069	sfxn5b (ENSTRUG00000013695)	smyd5 (ENSTRUG00000013635)	ENSTRUG00000013584	SLC4A11 (ENSTRUG00000013528)	ENOX2 (ENSTRUG00000013396)	ENSTRUG00000013110	med12 (ENSTRUG00000012646)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Ballan wrasse	MODERN SPECIES	942																HS3ST1 (ENSLBEG00000013471) #22
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Perciformes	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000171832	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT01030000234530.a.d.e.b.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT00940000162676.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000171832	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Channel bull blenny	MODERN SPECIES	1	ENSCGOG00000010461	ENSCGOG00000010463	ENSCGOG00000010468	ENSCGOG00000010471	ITGA6 (ENSCGOG00000010473)	gpc2 (ENSCGOG00000010481)	ENSCGOG00000010601	mcm7 (ENSCGOG00000010623)	ENSCGOG00000011038	COPS6 (ENSCGOG00000011047)	ENSCGOG00000011321	aurkb (ENSCGOG00000011322)	ENSCGOG00000011323 #19	nkx3-2 (ENSCGOG00000011341) #20	ENSCGOG00000011344	HS3ST1 (ENSCGOG00000011348) #22	ENSCGOG00000004078 #24	gsr (ENSCGOG00000004134)	slc30a9 (ENSCGOG00000004655)	GRXCR1 (ENSCGOG00000004778)	atp8a1 (ENSCGOG00000004862)	shisa3 (ENSCGOG00000007593)	ENSCGOG00000007595	sfxn5b (ENSCGOG00000007599)	smyd5 (ENSCGOG00000007846)	ENSCGOG00000008356	SLC4A11 (ENSCGOG00000008372)	ENOX2 (ENSCGOG00000008814)	ENSCGOG00000009201	ENOX2 (ENSCGOG00000009211)	ENSCGOG00000009295
Pike perch	MODERN SPECIES	18	ENSSLUG00000024058	ENSSLUG00000024073	ENSSLUG00000024103	ENSSLUG00000024108	gpc2 (ENSSLUG00000024133)	STAG3 (ENSSLUG00000024162)	mcm7 (ENSSLUG00000024175)	ENSSLUG00000024236	COPS6 (ENSSLUG00000024239)	ENSSLUG00000024249	aurkb (ENSSLUG00000024250)	ENSSLUG00000024255 #19	nkx3-2 (ENSSLUG00000024263) #20	RAB28 (ENSSLUG00000024264) #21	ENSSLUG00000024268	HS3ST1 (ENSSLUG00000024272) #22	ENSSLUG00000024275 #23	ENSSLUG00000024278	gsr (ENSSLUG00000024300)	slc30a9 (ENSSLUG00000024397)	GRXCR1 (ENSSLUG00000005179)	atp8a1 (ENSSLUG00000005603)	shisa3 (ENSSLUG00000011043)	BEND4 (ENSSLUG00000011050)	ENSSLUG00000011057	ENSSLUG00000011063	sfxn5b (ENSSLUG00000011068)	smyd5 (ENSSLUG00000011092)	ENSSLUG00000011238	SLC4A11 (ENSSLUG00000011279)	ENOX2 (ENSSLUG00000012058)
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00940000159322	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000171832	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Stickleback	MODERN SPECIES	3	zdhhc24 (ENSGACG00000017642)	ENSGACG00000017637	dpf2l (ENSGACG00000017632)	ENSGACG00000017628	ttc9c (ENSGACG00000017621)	ENSGACG00000017618	ehd1a (ENSGACG00000017605)	ubxn1 (ENSGACG00000017599)	ENSGACG00000017592	GANAB (ENSGACG00000017583)	INTS5 (ENSGACG00000017580)	ENSGACG00000017578	ENSGACG00000017576	ENSGACG00000017574	SCYL1 (ENSGACG00000017569)	HS3ST1 (ENSGACG00000017567) #22	ENSGACG00000017564	ENSGACG00000017563	gsr (ENSGACG00000017557)	slc30a9 (ENSGACG00000017554)	GRXCR1 (ENSGACG00000017551)	atp8a1 (ENSGACG00000017532)	BEND4 (ENSGACG00000017530)	ENSGACG00000017526	sfxn5b (ENSGACG00000017524)	smyd5 (ENSGACG00000017521)	ENSGACG00000017518	SLC4A11 (ENSGACG00000017515)	ENSGACG00000017510	ENSGACG00000017509	ENOX2 (ENSGACG00000017504)
Lumpfish	MODERN SPECIES	1	nitr13 (ENSCLMG00005017936)	ENSCLMG00005017933	ENSCLMG00005017932	ENSCLMG00005017927	gpc2 (ENSCLMG00005017882)	ENSCLMG00005017879	ENSCLMG00005017878	mcm7 (ENSCLMG00005017691)	ENSCLMG00005017687	COPS6 (ENSCLMG00005017553)	ENSCLMG00005017549	aurkb (ENSCLMG00005017547)	ENSCLMG00005017543 #19	nkx3-2 (ENSCLMG00005017542) #20	RAB28 (ENSCLMG00005017539) #21	HS3ST1 (ENSCLMG00005017538) #22	gsr (ENSCLMG00005017530)	slc30a9 (ENSCLMG00005016743)	GRXCR1 (ENSCLMG00005016728)	atp8a1 (ENSCLMG00005011319)	shisa3 (ENSCLMG00005011272)	BEND4 (ENSCLMG00005011270)	ENSCLMG00005011269	ENSCLMG00005011267	sfxn5b (ENSCLMG00005011264)	smyd5 (ENSCLMG00005011001)	ENSCLMG00005010973	SLC4A11 (ENSCLMG00005009761)	ENOX2 (ENSCLMG00005009745)	ENSCLMG00005009744	ENOX2 (ENSCLMG00005009571)
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000177190	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843.b #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m	ENSGT01040000240385.A.b.b.a.b.a.b
Gilthead seabream	MODERN SPECIES	9	ENSSAUG00010022963	ENSSAUG00010022962	ENSSAUG00010022961	ENSSAUG00010022960	ENSSAUG00010022943	gpc2 (ENSSAUG00010022862)	ENSSAUG00010022859	mcm7 (ENSSAUG00010022857)	ENSSAUG00010022853	COPS6 (ENSSAUG00010022836)	ENSSAUG00010022830	ENSSAUG00010022827 #19	ENSSAUG00010022824	nkx3-2 (ENSSAUG00010022822) #20	RAB28 (ENSSAUG00010022821) #21	HS3ST1 (ENSSAUG00010022817) #22	ENSSAUG00010022816 #23	ENSSAUG00010022815 #24	gsr (ENSSAUG00010022782)	slc30a9 (ENSSAUG00010022108)	GRXCR1 (ENSSAUG00010022099)	atp8a1 (ENSSAUG00010017273)	shisa3 (ENSSAUG00010017183)	BEND4 (ENSSAUG00010017181)	ENSSAUG00010017177	ENSSAUG00010017175	sfxn5b (ENSSAUG00010017169)	smyd5 (ENSSAUG00010016267)	ENSSAUG00010016258	SLC4A11 (ENSSAUG00010015763)	ENSSAUG00010015745
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14			ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843.b #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m	ENSGT01040000240385.A.b.b.a.b.a.b
European seabass	MODERN SPECIES	12	ENSDLAG00005032824	ENSDLAG00005012890	ENSDLAG00005028119	ENSDLAG00005007247	ENSDLAG00005007257	ENSDLAG00005007414	ENSDLAG00005007639	ENSDLAG00005030731	ENSDLAG00005033009	ENSDLAG00005007695	ENSDLAG00005029672	ENSDLAG00005029287	ENSDLAG00005026855 ##19	NKX3-2 (ENSDLAG00005028615) #20	RAB28 (ENSDLAG00005007730) #21	HS3ST1 (ENSDLAG00005032596) #22	ENSDLAG00005007753 #23	ENSDLAG00005007760 #24	ENSDLAG00005007774	slc30a9 (ENSDLAG00005008063)	GRXCR1 (ENSDLAG00005008583)	atp8a1 (ENSDLAG00005008615)	shisa3 (ENSDLAG00005027814)	BEND4 (ENSDLAG00005009043)	ENSDLAG00005009066	sfxn5b (ENSDLAG00005009076)	ENSDLAG00005009203	ENSDLAG00005009566	ENSDLAG00005009531	ENSDLAG00005009592	ENSDLAG00005034359
Large yellow croaker	MODERN SPECIES		ENSLCRG00005000455	ENSLCRG00005000457	ENSLCRG00005000458	ENSLCRG00005000464	gpc2 (ENSLCRG00005000467)	STAG3 (ENSLCRG00005000469)	mcm7 (ENSLCRG00005000473)	ENSLCRG00005000476	COPS6 (ENSLCRG00005000478)	ENSLCRG00005000495	ENSLCRG00005000496	aurkb (ENSLCRG00005000498)	ENSLCRG00005000500 #19	nkx3-2 (ENSLCRG00005000501) #20	RAB28 (ENSLCRG00005000504) #21	HS3ST1 (ENSLCRG00005000508) #22	ENSLCRG00005000511 #23	ENSLCRG00005000513 #24	gsr (ENSLCRG00005000521)	slc30a9 (ENSLCRG00005000743)	GRXCR1 (ENSLCRG00005001364)	atp8a1 (ENSLCRG00005001544)	shisa3 (ENSLCRG00005009242)	BEND4 (ENSLCRG00005009245)	ENSLCRG00005009246	sfxn5b (ENSLCRG00005009250)	smyd5 (ENSLCRG00005009266)	ENSLCRG00005009324	SLC4A11 (ENSLCRG00005009337)	ENOX2 (ENSLCRG00005010228)	ENSLCRG00005010364
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00940000173984	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Anabantaria	ANCESTRAL SPECIES	15	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000171832	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT00940000178332	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000018527	ENSMAMG00000025090	ENSMAMG00000026185	ENSMAMG00000018598	ENSMAMG00000018779	ENSMAMG00000018794	ENSMAMG00000018804	ENSMAMG00000018868	ENSMAMG00000018884	ENSMAMG00000018909	ENSMAMG00000025506	aurkb (ENSMAMG00000026263)	ENSMAMG00000018930 #19	nkx3-2 (ENSMAMG00000018984) #20	ENSMAMG00000018996	HS3ST1 (ENSMAMG00000025247) #22	ENSMAMG00000019040 #23	ENSMAMG00000027195	ENSMAMG00000019078	slc30a9 (ENSMAMG00000019086)	GRXCR1 (ENSMAMG00000019110)	atp8a1 (ENSMAMG00000019131)	shisa3 (ENSMAMG00000019218)	BEND4 (ENSMAMG00000019224)	ENSMAMG00000019239	ENSMAMG00000024830	sfxn5b (ENSMAMG00000019249)	smyd5 (ENSMAMG00000024307)	ENSMAMG00000019267	ENSMAMG00000019276	ENSMAMG00000019309
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00940000170413.B	ENSGT01030000234530.a.d.e.b.a.a.b	ENSGT01030000234530.a.c.b.b.a.a.b.q	ENSGT01030000234530.a.d.e.b.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT01040000240385.A.b.b.a.b.a.b	ENSGT00390000006788.a.a.n
Siamese fighting fish	MODERN SPECIES	1	ENSBSLG00000011846	ENSBSLG00000011803	ENSBSLG00000011727	ENSBSLG00000011661	ENSBSLG00000011615	gpc2 (ENSBSLG00000011423)	ENSBSLG00000011404	mcm7 (ENSBSLG00000011105)	ENSBSLG00000011088	COPS6 (ENSBSLG00000011037)	ENSBSLG00000010953	aurkb (ENSBSLG00000010905)	ENSBSLG00000010887 #19	nkx3-2 (ENSBSLG00000010875) #20	ENSBSLG00000010781	HS3ST1 (ENSBSLG00000010754) #22	ENSBSLG00000010626	ENSBSLG00000010356 #24	gsr (ENSBSLG00000010224)	slc30a9 (ENSBSLG00000010158)	GRXCR1 (ENSBSLG00000010148)	ATP8A1 (ENSBSLG00000008438)	shisa3 (ENSBSLG00000026235)	BEND4 (ENSBSLG00000026231)	ENSBSLG00000026211	ENSBSLG00000026208	sfxn5b (ENSBSLG00000026156)	smyd5 (ENSBSLG00000026108)	ENSBSLG00000026099	SLC4A11 (ENSBSLG00000025977)	ENSBSLG00000025793
Climbing perch	MODERN SPECIES	1	ENSATEG00000025448	ENSATEG00000028861	ENSATEG00000002105	ENSATEG00000002100	ENSATEG00000002057	ENSATEG00000026575	ENSATEG00000001999	ENSATEG00000001972	ENSATEG00000001917	ENSATEG00000001905	aurkb (ENSATEG00000001897)	ENSATEG00000001816 #19	ENSATEG00000025835	nkx3-2 (ENSATEG00000001782) #20	ENSATEG00000001753	HS3ST1 (ENSATEG00000001734) #22	ENSATEG00000001697 #24	ENSATEG00000001687	slc30a9 (ENSATEG00000001679)	GRXCR1 (ENSATEG00000001650)	atp8a1 (ENSATEG00000001432)	shisa3 (ENSATEG00000027092)	BEND4 (ENSATEG00000025348)	ENSATEG00000001378	sfxn5b (ENSATEG00000001316)	smyd5 (ENSATEG00000001268)	ENSATEG00000001180	ENSATEG00000001106	ENSATEG00000001101	ENSATEG00000001025	ENSATEG00000000913
Carangaria	ANCESTRAL SPECIES	15	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m	ENSGT01040000240385.A.b.b.a.b.a.b
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000171832	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m
Barramundi perch	MODERN SPECIES	305															RAB28 (ENSLCAG00010023451) #21	HS3ST1 (ENSLCAG00010023454) #22	ENSLCAG00010023457 #23	ENSLCAG00010023459	gsr (ENSLCAG00010023464)	slc30a9 (ENSLCAG00010023475)	GRXCR1 (ENSLCAG00010023484)	ATP8A1 (ENSLCAG00010023633)	shisa3 (ENSLCAG00010024183)	BEND4 (ENSLCAG00010024186)	ENSLCAG00010024188	sfxn5b (ENSLCAG00010024189)	smyd5 (ENSLCAG00010024194)	ENSLCAG00010024196	SLC4A11 (ENSLCAG00010024202)	ENOX2 (ENSLCAG00010024213)	ENSLCAG00010024219
Seriola	ANCESTRAL SPECIES	31	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT00940000162676.a.a.x.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a.m	ENSGT00940000177492	ENSGT01040000240385.A.b.b.a.b.a.b
Greater amberjack	MODERN SPECIES	113	ENSSDUG00000003071	ENSSDUG00000003103	ENSSDUG00000003176	ENSSDUG00000003194	ENSSDUG00000003208	gpc2 (ENSSDUG00000003228)	ENSSDUG00000003250	mcm7 (ENSSDUG00000003338)	ENSSDUG00000003388	COPS6 (ENSSDUG00000003419)	ENSSDUG00000003440	aurkb (ENSSDUG00000003445)	ENSSDUG00000003457 #19	nkx3-2 (ENSSDUG00000003467) #20	ENSSDUG00000003477	HS3ST1 (ENSSDUG00000003509) #22	gsr (ENSSDUG00000003522)	slc30a9 (ENSSDUG00000003564)	GRXCR1 (ENSSDUG00000003591)	atp8a1 (ENSSDUG00000003614)	shisa3 (ENSSDUG00000003749)	BEND4 (ENSSDUG00000003753)	ENSSDUG00000003770	sfxn5b (ENSSDUG00000003784)	smyd5 (ENSSDUG00000003811)	ENSSDUG00000003856	SLC4A11 (ENSSDUG00000003959)	ENOX2 (ENSSDUG00000004113)	ENSSDUG00000004488	ENSSDUG00000004512	ENOX2 (ENSSDUG00000004528)
Yellowtail amberjack	MODERN SPECIES	3289	ENSSLDG00000024417	ENSSLDG00000024400	ENSSLDG00000024384	ENSSLDG00000024372	ENSSLDG00000024358	gpc2 (ENSSLDG00000024350)	ENSSLDG00000024342	mcm7 (ENSSLDG00000024311)	ENSSLDG00000024305	COPS6 (ENSSLDG00000024291)	ENSSLDG00000024212	aurkb (ENSSLDG00000024189)	ENSSLDG00000024171 #19	nkx3-2 (ENSSLDG00000024167) #20	RAB28 (ENSSLDG00000024149) #21	HS3ST1 (ENSSLDG00000024142) #22	ENSSLDG00000024139 #24	gsr (ENSSLDG00000024121)	slc30a9 (ENSSLDG00000024052)	GRXCR1 (ENSSLDG00000024025)	atp8a1 (ENSSLDG00000023826)	shisa3 (ENSSLDG00000023805)	BEND4 (ENSSLDG00000023795)	ppid (ENSSLDG00000023782)	etfdh (ENSSLDG00000023759)	rxfp1 (ENSSLDG00000023732)	tmem144b (ENSSLDG00000023697)	GASK1B (ENSSLDG00000023686)	gria2b (ENSSLDG00000023651)	glrbb (ENSSLDG00000023630)	PDGFC (ENSSLDG00000023607)
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT00940000159322	ENSGT01030000234530.a.d.e.a	ENSGT00940000173984	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000154894.a	ENSGT00940000177492	ENSGT01040000240385.A.b.b.a.b.a.b
Turbot	MODERN SPECIES	4	ENSSMAG00000010841	ENSSMAG00000023026	ENSSMAG00000010900	ENSSMAG00000010934	ENSSMAG00000010978	ENSSMAG00000025298	MCM7 (ENSSMAG00000011017)	ENSSMAG00000011041	ENSSMAG00000011068	ENSSMAG00000011116	ENSSMAG00000011168	ENSSMAG00000011199	NKX3-2 (ENSSMAG00000011278) #20	RAB28 (ENSSMAG00000031249) #21	ENSSMAG00000011334 #23	HS3ST1 (ENSSMAG00000029254) #22	ENSSMAG00000011355 #24	ENSSMAG00000011360	slc30a9 (ENSSMAG00000011372)	GRXCR1 (ENSSMAG00000011397)	atp8a1 (ENSSMAG00000011459)	shisa3 (ENSSMAG00000011715)	BEND4 (ENSSMAG00000011722)	ENSSMAG00000011727	sfxn5b (ENSSMAG00000011735)	smyd5 (ENSSMAG00000011748)	ENSSMAG00000011812	ENSSMAG00000011830	ENSSMAG00000011885	ENSSMAG00000022207	ENSSMAG00000011949
Tongue sole	MODERN SPECIES	6	ENSCSEG00000003264	ITGA6 (ENSCSEG00000003251)	gpc2 (ENSCSEG00000003250)	ENSCSEG00000003246	ENSCSEG00000003242	mcm7 (ENSCSEG00000003225)	ENSCSEG00000003221	COPS6 (ENSCSEG00000003213)	ENSCSEG00000003206	aurkb (ENSCSEG00000003195)	ENSCSEG00000003193 #19	ENSCSEG00000003190	ENSCSEG00000003174	nkx3-2 (ENSCSEG00000003170) #20	ENSCSEG00000003156	HS3ST1 (ENSCSEG00000003153) #22	ENSCSEG00000003147 #23	ENSCSEG00000003145 #24	gsr (ENSCSEG00000003142)	slc30a9 (ENSCSEG00000003137)	GRXCR1 (ENSCSEG00000003132)	ATP8A1 (ENSCSEG00000003103)	shisa3 (ENSCSEG00000003099)	shisa3 (ENSCSEG00000003096)	BEND4 (ENSCSEG00000003093)	SLC4A11 (ENSCSEG00000003067)	ENSCSEG00000003056	smyd5 (ENSCSEG00000003044)	sfxn5b (ENSCSEG00000003039)	ENSCSEG00000003032	ENSCSEG00000003026
Tiger tail seahorse	MODERN SPECIES	175	fermt3b (ENSHCOG00000007141)	trpt1 (ENSHCOG00000000218)	ZBTB3 (ENSHCOG00000000222)	rnaseh2c (ENSHCOG00000007177)	ENSHCOG00000007186	ENSHCOG00000007198	mcm7 (ENSHCOG00000007250)	ENSHCOG00000007267	COPS6 (ENSHCOG00000000865)	ENSHCOG00000007320	aurkb (ENSHCOG00000000240)	ENSHCOG00000000244 #19	ENSHCOG00000007354	nkx3-2 (ENSHCOG00000007369) #20	RAB28 (ENSHCOG00000007381) #21	HS3ST1 (ENSHCOG00000007391) #22	ENSHCOG00000007394	gsr (ENSHCOG00000007400)	slc30a9 (ENSHCOG00000007409)	GRXCR1 (ENSHCOG00000007426)	ENSHCOG00000007435	ATP8A1 (ENSHCOG00000007474)	shisa3 (ENSHCOG00000007483)	BEND4 (ENSHCOG00000007492)	ENSHCOG00000007513	sfxn5b (ENSHCOG00000007524)	smyd5 (ENSHCOG00000007544)	ENSHCOG00000007565	SLC4A11 (ENSHCOG00000000801)	ENSHCOG00000007604	ENSHCOG00000007610
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005001213	ENSMMDG00005001227	ENSMMDG00005001269	ENSMMDG00005001280	ENSMMDG00005001289	ENSMMDG00005001313	gpc2 (ENSMMDG00005001435)	ENSMMDG00005001983	mcm7 (ENSMMDG00005002053)	ENSMMDG00005003440	COPS6 (ENSMMDG00005003442)	ENSMMDG00005003445	aurkb (ENSMMDG00005003446)	nkx3-2 (ENSMMDG00005003448) #20	RAB28 (ENSMMDG00005003450) #21	HS3ST1 (ENSMMDG00005003453) #22	ENSMMDG00005003455 #23	ENSMMDG00005003456 #24	gsr (ENSMMDG00005003474)	slc30a9 (ENSMMDG00005003625)	GRXCR1 (ENSMMDG00005003635)	atp8a1 (ENSMMDG00005003653)	shisa3 (ENSMMDG00005003682)	BEND4 (ENSMMDG00005003687)	ENSMMDG00005003693	ENSMMDG00005003695	sfxn5b (ENSMMDG00005003699)	smyd5 (ENSMMDG00005003710)	ENSMMDG00005003806	SLC4A11 (ENSMMDG00005003834)	ENOX2 (ENSMMDG00005005106)
Cod	MODERN SPECIES	1	ENSGMOG00000019766	ENSGMOG00000036584	ENSGMOG00000027768	ENSGMOG00000018798	ENSGMOG00000018792	ENSGMOG00000018770	ENSGMOG00000027575	ENSGMOG00000018754	ENSGMOG00000033146	aurkb (ENSGMOG00000018737)	ENSGMOG00000025527 #19	ENSGMOG00000018730	nkx3-2 (ENSGMOG00000026159) #20	ENSGMOG00000034110	RAB28 (ENSGMOG00000018715) #21	HS3ST1 (ENSGMOG00000019948) #22	ENSGMOG00000036954	ENSGMOG00000031231 #24	ENSGMOG00000015277	ENSGMOG00000027663	cpeb4a (ENSGMOG00000023337)	ENSGMOG00000015364	NKX2-5 (ENSGMOG00000015370)	BNIP1 (ENSGMOG00000036420)	atp6v0e1 (ENSGMOG00000029150)	rpl26 (ENSGMOG00000015401)	ENSGMOG00000018383	ENSGMOG00000015432	ENSGMOG00000015440	ENSGMOG00000015482	LSM11 (ENSGMOG00000015497)
Protacanthopterygii	ANCESTRAL SPECIES	71	ENSGT00940000157645.f	ENSGT01030000234530.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT01060000248608.b	ENSGT00940000156198.c.a #19	ENSGT00530000067117	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000169825	ENSGT00940000158783.a.b	ENSGT01030000234641.a.a.a	ENSGT00510000047420	ENSGT00940000160491.d.b	ENSGT00940000165596	ENSGT00940000154894.a
Salmoninae	ANCESTRAL SPECIES	355	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT00950000182972.a.b.a	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00950000182866.D.d.b.`b.b	ENSGT00950000183073.a.a.b.f.a	ENSGT00390000003354.e	ENSGT00940000156198.c.a #19	ENSGT00530000067117.a	ENSGT00940000161843 #20	ENSGT00940000161833.b.a #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a	ENSGT00940000161360.a.a	ENSGT00390000014963.e
Huchen	MODERN SPECIES	576																HS3ST1 (ENSHHUG00000010662) #22	ENSHHUG00000010639	ENSHHUG00000010631 #24	gsr (ENSHHUG00000010591)	slc30a9 (ENSHHUG00000010231)	GRXCR1 (ENSHHUG00000010221)	ATP8A1 (ENSHHUG00000009853)	shisa3 (ENSHHUG00000009822)	BEND4 (ENSHHUG00000009816)	ENSHHUG00000009807	ENSHHUG00000009784	ENSHHUG00000009780	ZNHIT6 (ENSHHUG00000009769)	ccn1 (ENSHHUG00000009760)	DDAH1 (ENSHHUG00000009758)
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT01030000234530.a.a.a.b.a	ENSGT01010000225053	ENSGT01030000234530.a.a.a.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00950000182866.D.d.b.`b.b	ENSGT00950000183073.a.a.b.f.a	ENSGT00390000003354.e	ENSGT00940000161843 #20	ENSGT00940000161833.b.a #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a	ENSGT00940000161360.a.a	ENSGT00390000014963.e	ENSGT00940000158783.a.b.p	ENSGT01030000234641.a.a.a.c	ENSGT00510000047420.j	ENSGT00940000160491.d.b.c	ENSGT00940000165596	ENSGT00940000154894.a	ENSGT00390000006788.a.a.r.b
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000158976.h.b	ENSGT00940000155690.b.a.f	ENSGT00390000001752.r	ENSGT00940000157044.p	ENSGT00390000009552.i	ENSGT00390000006633.a.r	ENSGT00940000161111.a	ENSGT00950000183073.a.a.b.f.a	ENSGT00390000003354.e	ENSGT00940000156198.c.a #19	ENSGT00530000067117.a	ENSGT00940000161843 #20	ENSGT00940000161833.b.b #21	ENSGT00390000008346.e	ENSGT00940000161833.b.a #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986.q	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a	ENSGT00940000161360.a.a	ENSGT00390000014963.e	ENSGT00940000158783.a.b.p	ENSGT01030000234641.a.a.a.c	ENSGT00510000047420.j	ENSGT00940000160491.d.b.c	ENSGT00940000165596	ENSGT00940000154894.a	ENSGT00390000006788.a.a.r.b
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000036495	ENSOMYG00000049577	ENSOMYG00000036405	ENSOMYG00000036382	ENSOMYG00000035735	ENSOMYG00000035638	csn6 (ENSOMYG00000035631)	ENSOMYG00000035619	ENSOMYG00000035613	ENSOMYG00000066660	ENSOMYG00000035603 #19	NKX3-2 (ENSOMYG00000061493) #20	RAB28 (ENSOMYG00000061686) #21	ENSOMYG00000063521	ENSOMYG00000063323	HS3ST1 (ENSOMYG00000035552) #22	ENSOMYG00000035529 #24	ENSOMYG00000034247	slc30a9 (ENSOMYG00000034064)	GRXCR1 (ENSOMYG00000033999)	ENSOMYG00000033986	ATP8A1 (ENSOMYG00000029509)	shisa3 (ENSOMYG00000027930)	BEND4 (ENSOMYG00000027923)	ENSOMYG00000027916	ENSOMYG00000050528	sfxn5b (ENSOMYG00000027902)	ENSOMYG00000072081	smyd5 (ENSOMYG00000027853)	ENSOMYG00000027783	ENSOMYG00000027637
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT01060000250101	ENSGT00940000154006.b.e	ENSGT00940000158976.h.b	ENSGT00940000155690.b.a.f	ENSGT00390000001752.r	ENSGT00940000157044.p	ENSGT00390000009552.i	ENSGT00390000006633.a.r	ENSGT00940000161111.a	ENSGT00950000183073.a.a.b.f.a	ENSGT00390000003354.e	ENSGT00940000156198.c.a #19	ENSGT00530000067117.a	ENSGT00940000161843 #20	ENSGT00940000161833.b.a #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986.q	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a	ENSGT00940000161360.a.a	ENSGT00390000014963.e	ENSGT00940000158783.a.b.p	ENSGT01030000234641.a.a.a.c	ENSGT00510000047420.j	ENSGT00940000160491.d.b.c	ENSGT00940000165596	ENSGT00940000154894.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.a.b.b.a
Coho salmon	MODERN SPECIES	10	ENSOKIG00005011219	ENSOKIG00005011205	rnasel3 (ENSOKIG00005011201)	gpc2 (ENSOKIG00005010983)	mcm7 (ENSOKIG00005010408)	ENSOKIG00005010364	ENSOKIG00005010357	COPS6 (ENSOKIG00005010343)	ENSOKIG00005010337	ENSOKIG00005010332	ENSOKIG00005010327	ENSOKIG00005010281 #19	ENSOKIG00005010235	nkx3-2 (ENSOKIG00005010222) #20	RAB28 (ENSOKIG00005010189) #21	HS3ST1 (ENSOKIG00005010176) #22	ENSOKIG00005010158	ENSOKIG00005010145 #24	gsr (ENSOKIG00005010012)	slc30a9 (ENSOKIG00005009869)	GRXCR1 (ENSOKIG00005009853)	ATP8A1 (ENSOKIG00005006156)	shisa3 (ENSOKIG00005005918)	BEND4 (ENSOKIG00005005910)	ENSOKIG00005033745	sfxn5b (ENSOKIG00005033721)	smyd5 (ENSOKIG00005033613)	ENSOKIG00005033600	ENSOKIG00005033583	SLC4A11 (ENSOKIG00005033447)	ENSOKIG00005033412
Chinook salmon	MODERN SPECIES	117															RAB28 (ENSOTSG00005029611) #21	HS3ST1 (ENSOTSG00005029622) #22	ENSOTSG00005029624	ENSOTSG00005029625 #24	gsr (ENSOTSG00005029628)
Salmo	ANCESTRAL SPECIES	24	ENSGT01030000234530.a.b.a.b.a.b	ENSGT00950000182866.D.d.b.`b.a	ENSGT01030000234530.a.b.a.b.b	ENSGT01030000234530.a.b.a.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT01050000244824.C	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00950000182866.D.d.b.`b.b	ENSGT00530000067117.a	ENSGT00940000161843 #20	ENSGT00940000161833.b.a #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00940000156986	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a	ENSGT00940000161360.a.a	ENSGT00390000014963.e	ENSGT00940000158783.a.b.p	ENSGT01030000234641.a.a.a.c	ENSGT00510000047420.j	ENSGT00940000160491.d.b.c	ENSGT00940000165596	ENSGT00940000154894.a	ENSGT00390000006788.a.a.r.b
River trout	MODERN SPECIES	22	ENSSTUG00000002491	ENSSTUG00000002510	ENSSTUG00000002568	ENSSTUG00000002580	ENSSTUG00000002632	gpc2 (ENSSTUG00000002698)	ENSSTUG00000002988	mcm7 (ENSSTUG00000003025)	ENSSTUG00000003349	COPS6 (ENSSTUG00000003356)	ENSSTUG00000003393	ENSSTUG00000003397	ENSSTUG00000003405	nkx3-2 (ENSSTUG00000003434) #20	RAB28 (ENSSTUG00000003454) #21	HS3ST1 (ENSSTUG00000003474) #22	ENSSTUG00000003491	ENSSTUG00000003507 #24	gsr (ENSSTUG00000003572)	slc30a9 (ENSSTUG00000004494)	GRXCR1 (ENSSTUG00000004619)	ATP8A1 (ENSSTUG00000004799)	shisa3 (ENSSTUG00000010106)	BEND4 (ENSSTUG00000010112)	ENSSTUG00000010127	sfxn5b (ENSSTUG00000010134)	smyd5 (ENSSTUG00000010188)	ENSSTUG00000010275	ENSSTUG00000010286	SLC4A11 (ENSSTUG00000010314)	ENOX2 (ENSSTUG00000010886)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000002600	ENSSSAG00000002609	ENSSSAG00000010613	ENSSSAG00000002617	ENSSSAG00000083945	ENSSSAG00000002635	ENSSSAG00000002657	ENSSSAG00000003171	ENSSSAG00000005407	ENSSSAG00000005511	ENSSSAG00000005735	ENSSSAG00000005741	ENSSSAG00000104763	NKX3-2 (ENSSSAG00000091968) #20	rab28 (ENSSSAG00000005777) #21	HS3ST1 (ENSSSAG00000109723) #22	ENSSSAG00000005824	ENSSSAG00000005838 #24	ENSSSAG00000117028	slc30a9 (ENSSSAG00000005870)	GRXCR1 (ENSSSAG00000006661)	atp8a1 (ENSSSAG00000006882)	shisa3 (ENSSSAG00000098743)	BEND4 (ENSSSAG00000092370)	ENSSSAG00000042002	sfxn5b (ENSSSAG00000102240)	ENSSSAG00000106924	ENSSSAG00000098136	ENSSSAG00000042219	ENSSSAG00000043152	ENSSSAG00000043157
Northern pike	MODERN SPECIES	3	ENSELUG00000033855	ENSELUG00000027222	ENSELUG00000030826	ENSELUG00000034507	ENSELUG00000033077	gpc2 (ENSELUG00000024517)	STAG3 (ENSELUG00000027905)	mcm7 (ENSELUG00000024588)	ENSELUG00000001643	COPS6 (ENSELUG00000001644)	ENSELUG00000001645	ENSELUG00000034579	ENSELUG00000026093 #19	nkx3-2 (ENSELUG00000018758) #20	ENSELUG00000028762	HS3ST1 (ENSELUG00000033906) #22	ENSELUG00000031250	gsr (ENSELUG00000018639)	ENSELUG00000018596	slc30a9 (ENSELUG00000009145)	GRXCR1 (ENSELUG00000027758)	ENSELUG00000025875	atp8a1 (ENSELUG00000010166)	shisa3 (ENSELUG00000010033)	BEND4 (ENSELUG00000010003)	ENSELUG00000009871	ENSELUG00000009903	sfxn5b (ENSELUG00000009844)	ENSELUG00000009771	vtg3 (ENSELUG00000009726)	ENOX2 (ENSELUG00000016690)
Otomorpha	ANCESTRAL SPECIES	211	ENSGT01030000234530.a.f.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000164716.C.d	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Otophysi	ANCESTRAL SPECIES	147	ENSGT00390000002137	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b	ENSGT00940000155719.b	ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000164716.C.d	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A
Characiphysae	ANCESTRAL SPECIES	108	ENSGT00390000002137	ENSGT00940000167088	ENSGT00390000008458	ENSGT00940000157323	ENSGT00950000183055.b.a	ENSGT00940000155116.b	ENSGT00940000155719.b	ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000155857.e	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000164716.C.d	ENSGT00390000016221	ENSGT00940000160490
Channel catfish	MODERN SPECIES	11	kiaa0141 (ENSIPUG00000000269)	fgf2 (ENSIPUG00000000274)	nudt6 (ENSIPUG00000000275)	spata5 (ENSIPUG00000000279)	SPRY1 (ENSIPUG00000000286)	ankrd50 (ENSIPUG00000000288)	fat4 (ENSIPUG00000000290)	ENSIPUG00000000299	LEPROTL1 (ENSIPUG00000000303)	fbxl12 (ENSIPUG00000000308)	Tmem107 (ENSIPUG00000000310)	aurkb (ENSIPUG00000000314)	ENSIPUG00000000320 #19	nkx3-2 (ENSIPUG00000000325)	rab28 (ENSIPUG00000000328) #21	HS3ST1 (ENSIPUG00000000339) #22	ENSIPUG00000000341	ENSIPUG00000000345 #24	wdr1 (ENSIPUG00000000350) #25	SLC2A9 (ENSIPUG00000000360) #27	ENSIPUG00000000377	zbtb49 (ENSIPUG00000000380)	lyar (ENSIPUG00000000389)	TMEM128 (ENSIPUG00000000391)	OTOP1 (ENSIPUG00000000394)	ENSIPUG00000000402	evc (ENSIPUG00000000408)	cops6 (ENSIPUG00000000413)	ENSIPUG00000000419	mcm7 (ENSIPUG00000000421)	stag3 (ENSIPUG00000000431)
Characiphysae_b	ANCESTRAL SPECIES	155								ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000155857.e	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B
Characoidei	ANCESTRAL SPECIES	175								ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000155857.e	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b.f
Mexicana tetra	MODERN SPECIES	11	ENSAMXG00000003967	ints10 (ENSAMXG00000033968)	KLB (ENSAMXG00000003959)	ube2ka (ENSAMXG00000003951)	CHRNA9 (ENSAMXG00000003947)	ENSAMXG00000034355	ENSAMXG00000037001	ENSAMXG00000034663	ENSAMXG00000003918	fgf2 (ENSAMXG00000040546)	nudt6 (ENSAMXG00000003916)	SPATA5 (ENSAMXG00000003913)	spry1 (ENSAMXG00000038734)	ANKRD50 (ENSAMXG00000003908)	FAT4 (ENSAMXG00000003876)	HS3ST1 (ENSAMXG00000039042) #22	ENSAMXG00000036559	WDR1 (ENSAMXG00000041917) #25	SLC2A9 (ENSAMXG00000037535) #27	ENSAMXG00000043476	OTOP1 (ENSAMXG00000008376)	TMEM128 (ENSAMXG00000035276)	lyar (ENSAMXG00000036727)	zbtb49 (ENSAMXG00000008432)	NSG1 (ENSAMXG00000008457)	stx18 (ENSAMXG00000008474)	MSX1 (ENSAMXG00000038753)	STK32B (ENSAMXG00000008518)	ENSAMXG00000031239	CRMP1 (ENSAMXG00000034986)	COPS6 (ENSAMXG00000032673)
Red-bellied piranha	MODERN SPECIES	110							zgc:92045 (ENSPNAG00000013135)	ENSPNAG00000013130	ENSPNAG00000013118	ENSPNAG00000013114	tmem107 (ENSPNAG00000013100)	aurkb (ENSPNAG00000002552)	ENSPNAG00000002544 #19	nkx3-2 (ENSPNAG00000013055) #20	RAB28 (ENSPNAG00000002529) #21	HS3ST1 (ENSPNAG00000002510) #22	ENSPNAG00000013008 #24	WDR1 (ENSPNAG00000012996) #25	SLC2A9 (ENSPNAG00000002477) #27	ENSPNAG00000012878	OTOP1 (ENSPNAG00000012870)	TMEM128 (ENSPNAG00000012806)	ENSPNAG00000002396	lyar (ENSPNAG00000012758)	zbtb49 (ENSPNAG00000002376)	NSG1 (ENSPNAG00000012715)	stx18 (ENSPNAG00000002363)	msx1a (ENSPNAG00000002342)	CYTL1 (ENSPNAG00000012628)	STK32B (ENSPNAG00000002329)	ENSPNAG00000012587
Electric eel	MODERN SPECIES	446								zgc:92045 (ENSEEEG00000008653)	ENSEEEG00000008652	tmem107 (ENSEEEG00000008651)	aurkb (ENSEEEG00000008649)	ENSEEEG00000008647 #19	nkx3-2 (ENSEEEG00000008645) #20	ENSEEEG00000008643	RAB28 (ENSEEEG00000008634) #21	HS3ST1 (ENSEEEG00000008630) #22	ENSEEEG00000008627	WDR1 (ENSEEEG00000008614) #25	SLC2A9 (ENSEEEG00000008609) #27
Cyprinoidei	ANCESTRAL SPECIES	135	ENSGT00390000002137	ENSGT00940000167088	ENSGT00390000008458	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00940000155116.b	ENSGT00940000155719.b.h.b	ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00390000014827.b	ENSGT00940000158980.mb	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350.i	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000014853
Cyprininae	ANCESTRAL SPECIES	192	ENSGT00390000002137	ENSGT00940000167088.e	ENSGT00390000008458.j	ENSGT00940000157323	ENSGT00950000183055.b.a.e.a	ENSGT00940000155116.b.jb	ENSGT00940000155719.b.h.b.a	ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00390000014827.b	ENSGT00940000158980.mb.a.b	ENSGT00940000158980.mb.a.a	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b.a	ENSGT00940000160595.b.c.a.b #24	ENSGT00940000156835.l.a.b.b	ENSGT00940000160595.b.c.a.a #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a.c #26	ENSGT00940000159350.i.b	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	5	ENSCARG00000011129	FAT4 (ENSCARG00000011139)	zgc:92045 (ENSCARG00000011177)	ENSCARG00000011189	ENSCARG00000011207	ube2ka (ENSCARG00000011222)	ENSCARG00000011248	tlr1 (ENSCARG00000011274)	ints10 (ENSCARG00000011295)	ENSCARG00000011437	ENSCARG00000011556	aurkb (ENSCARG00000011568)	ENSCARG00000011601 #19	ENSCARG00000011657	ENSCARG00000011665	HS3ST1 (ENSCARG00000011683) #22	ENSCARG00000011689	ENSCARG00000011711 #24	WDR1 (ENSCARG00000011730) #25	DRD5 (ENSCARG00000011811) #26	ENSCARG00000011815	ENSCARG00000011826 #24	HS3ST1 (ENSCARG00000011830) #22	zbtb49 (ENSCARG00000011835)	lyar (ENSCARG00000011845)	smtla (ENSCARG00000011854)	COPS6 (ENSCARG00000011864)	ENSCARG00000011906	ENSCARG00000011914	MCM7 (ENSCARG00000011956)	ENSCARG00000012134
Goldfish	MODERN SPECIES	5	ENSCARG00000012195	ENSCARG00000012189	ENSCARG00000012177	ENSCARG00000012169	spry1 (ENSCARG00000012162)	nudt6 (ENSCARG00000012158)	fgf2 (ENSCARG00000012144)	ENSCARG00000012134	MCM7 (ENSCARG00000011956)	ENSCARG00000011914	ENSCARG00000011906	COPS6 (ENSCARG00000011864)	smtla (ENSCARG00000011854)	lyar (ENSCARG00000011845)	zbtb49 (ENSCARG00000011835)	HS3ST1 (ENSCARG00000011830) #22	ENSCARG00000011826 #24	ENSCARG00000011815	DRD5 (ENSCARG00000011811) #26	WDR1 (ENSCARG00000011730) #25	ENSCARG00000011711 #24	ENSCARG00000011689	HS3ST1 (ENSCARG00000011683) #22	ENSCARG00000011665	ENSCARG00000011657	ENSCARG00000011601 #19	aurkb (ENSCARG00000011568)	ENSCARG00000011556	ENSCARG00000011437	ints10 (ENSCARG00000011295)	tlr1 (ENSCARG00000011274)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	317													ENSCARG00000067798	ENSCARG00000067804	ENSCARG00000067808	HS3ST1 (ENSCARG00000067812) #22
Goldfish	MODERN SPECIES	32	lamp2 (ENSCARG00000014210)	cul4b (ENSCARG00000012174)	mcts1 (ENSCARG00000012063)	c1galt1c1 (ENSCARG00000012061)	zdhhc9 (ENSCARG00000012053)	ENSCARG00000012035	eef1g (ENSCARG00000011947)	polr2g (ENSCARG00000011922)	neurog1 (ENSCARG00000011917)	slc25a48 (ENSCARG00000011904)	ENSCARG00000011895	ENSCARG00000011875	ENSCARG00000011870	ENSCARG00000011865	ENSCARG00000011860	HS3ST1 (ENSCARG00000011848) #22	ENSCARG00000011843	ENSCARG00000011840	neurog1 (ENSCARG00000011833)	ENSCARG00000010874	ENSCARG00000010805	tgfbi (ENSCARG00000010607)	smad5 (ENSCARG00000010559)	syvn1 (ENSCARG00000010510)	gpr137 (ENSCARG00000010502)	lman2 (ENSCARG00000010467)	tmed9 (ENSCARG00000010459)	ENSCARG00000010457	ssrp1a (ENSCARG00000010403)	ENSCARG00000010385	ENSCARG00000010380 #24
Cyprininae_a	ANCESTRAL SPECIES	351						ENSGT00940000155719.b.h.b.b.a	ENSGT00390000006503.b	ENSGT00390000003354	ENSGT00940000158980.mb.a.b	ENSGT00390000014827.b	ENSGT00940000158980.lb	ENSGT00940000158980.mb.b	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b.b	ENSGT00940000160595.b.c.a.a #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a.c #26	ENSGT00940000159350.i.b	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000014853.h	ENSGT00940000164716.C.d.a.a.b	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00950000183073.a.a.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	35	spry1 (ENSCCRG00000025019)	ENSCCRG00000057487	ENSCCRG00000069088	ENSCCRG00000003460	ENSCCRG00000065364	FAT4 (ENSCCRG00000068635)	ENSCCRG00000080678	ENSCCRG00000031681	tmem107 (ENSCCRG00000069036)	nkx3-2 (ENSCCRG00000025843) #20	aurkb (ENSCCRG00000053677)	ENSCCRG00000018308	ENSCCRG00000058202 #21	ENSCCRG00000054319	ENSCCRG00000052713	HS3ST1 (ENSCCRG00000018408) #22	ENSCCRG00000080674	ENSCCRG00000007156 #24	ENSCCRG00000054538 #26	OTOP1 (ENSCCRG00000061621)	lyar (ENSCCRG00000023061)	zbtb49 (ENSCCRG00000023067)	stx18 (ENSCCRG00000056636)	msx1a (ENSCCRG00000014316)	CYTL1 (ENSCCRG00000069130)	STK32B (ENSCCRG00000014300)	ENSCCRG00000060287	ENSCCRG00000073672	ENSCCRG00000070993	ENSCCRG00000005398
Common carp reference	MODERN SPECIES	20	ANKRD50 (ENSCCRG00000054571)	ENSCCRG00000041057	ENSCCRG00000070823	ENSCCRG00000067352	FAT4 (ENSCCRG00000070607)	ENSCCRG00000061351	ENSCCRG00000017247	aurkb (ENSCCRG00000062399)	ENSCCRG00000057412 #19	nkx3-2 (ENSCCRG00000060329) #20	RAB28 (ENSCCRG00000054459) #21	ENSCCRG00000082104	ENSCCRG00000046291	ENSCCRG00000057676	ENSCCRG00000063171	HS3ST1 (ENSCCRG00000077361) #22	ENSCCRG00000007145	WDR1 (ENSCCRG00000007054) #25	ENSCCRG00000064859 #24	ENSCCRG00000066393	SLC2A9 (ENSCCRG00000071999) #27	DRD5 (ENSCCRG00000006599) #26	OTOP1 (ENSCCRG00000006593)	TMEM128 (ENSCCRG00000080581)	lyar (ENSCCRG00000019012)	stx18 (ENSCCRG00000014337)	msx1a (ENSCCRG00000014333)	CYTL1 (ENSCCRG00000059801)	ENSCCRG00000065351	ENSCCRG00000060074	ENSCCRG00000030097
Golden-line barbel	MODERN SPECIES	1381															ENSSGRG00000024442	HS3ST1 (ENSSGRG00000024434) #22	ENSSGRG00000024429	ENSSGRG00000024426 #24	WDR1 (ENSSGRG00000024416) #25	SLC2A9 (ENSSGRG00000024223) #27	DRD5 (ENSSGRG00000024213) #26	ENSSGRG00000024212	OTOP1 (ENSSGRG00000024211)	TMEM128 (ENSSGRG00000024209)
Clupeiformes	ANCESTRAL SPECIES	23	ENSGT00940000167002	ENSGT00940000159651.d	ENSGT00940000166497	ENSGT00950000183135.B.a.b	ENSGT00940000167144	ENSGT00940000159024	ENSGT00940000157266.b	ENSGT00550000074940	ENSGT00390000014316.c.a	ENSGT00950000183035.b.e	ENSGT00940000164838.f	ENSGT00390000010950	ENSGT00940000162201.p	ENSGT00940000161843 #20	ENSGT00940000164241	ENSGT00940000160449 #22	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #27	ENSGT00940000157037.a.c.a #26	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000156141.B	ENSGT00950000182859.A.a.a.a	ENSGT00940000153169.A.b.b.e.b	ENSGT00940000158625	ENSGT00940000159492	ENSGT00940000155378.c.a	ENSGT00950000182932.A.b.a.b
Atlantic herring	MODERN SPECIES	22	pcgf1 (ENSCHAG00000011180)	lbx2 (ENSCHAG00000011150)	nanos1 (ENSCHAG00000011138)	ap1ar (ENSCHAG00000011122)	gabra4 (ENSCHAG00000010967)	ENSCHAG00000010381	GUF1 (ENSCHAG00000010012)	GNPDA2 (ENSCHAG00000009965)	ENSCHAG00000009935	ENSCHAG00000009922	ints10 (ENSCHAG00000009676)	tlr1 (ENSCHAG00000009665)	nkx3-2 (ENSCHAG00000009654) #20	ENSCHAG00000009618	ENSCHAG00000009597	HS3ST1 (ENSCHAG00000009592) #22	ENSCHAG00000009574 #24	smtnl1 (ENSCHAG00000009564)	SLC43A3 (ENSCHAG00000009557)	gar1 (ENSCHAG00000009545)	adh5 (ENSCHAG00000009159)	eif4ea (ENSCHAG00000009050)	LINGO2 (ENSCHAG00000009029)	tomm5 (ENSCHAG00000009006)	ENSCHAG00000008978	ENSCHAG00000008972	grhpra (ENSCHAG00000008900)	ENSCHAG00000008882	mrpl18 (ENSCHAG00000008868)	aurkb (ENSCHAG00000008856)	TMEM107 (ENSCHAG00000008821)
Denticle herring	MODERN SPECIES	9	lbx2 (ENSDCDG00000026714)	nanos1 (ENSDCDG00000026712)	ap1ar (ENSDCDG00000026709)	gabra4 (ENSDCDG00000026706)	ENSDCDG00000025555	GUF1 (ENSDCDG00000025116)	ENSDCDG00000025104	ENSDCDG00000025102	ENSDCDG00000025101	ints10 (ENSDCDG00000025095)	tlr1 (ENSDCDG00000025094)	ENSDCDG00000025075 #19	ENSDCDG00000025068	nkx3-2 (ENSDCDG00000025066) #20	ENSDCDG00000025061	HS3ST1 (ENSDCDG00000025054) #22	ENSDCDG00000025051	ENSDCDG00000025050 #24	WDR1 (ENSDCDG00000025046) #25	SLC2A9 (ENSDCDG00000023972) #27	DRD5 (ENSDCDG00000023936) #26	OTOP1 (ENSDCDG00000023933)	TMEM128 (ENSDCDG00000023930)	lyar (ENSDCDG00000023927)	CPXM1 (ENSDCDG00000023602)	ENSDCDG00000023411	UBE2D3 (ENSDCDG00000023284)	NFKB1 (ENSDCDG00000021339)	DGKQ (ENSDCDG00000021230)	ENSDCDG00000021218	gsr (ENSDCDG00000021139)