Murinae	ANCESTRAL SPECIES	12	ENSGT00850000132319.a.a.b #7	ENSGT00390000000470 #8	ENSGT00390000005639.a.a #9	ENSGT00390000010628 #10	ENSGT00530000063586.b #11	ENSGT00940000154372.a.b #12	ENSGT00390000017291.a #13	ENSGT00390000017291.b #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #26	ENSGT00940000157037.a #27	ENSGT00940000159350 #28	ENSGT00390000012901 #29	ENSGT00390000003477 #30	ENSGT00940000158750 #31	ENSGT00390000000483.b #32	ENSGT00390000014853 #33	ENSGT00940000161623 #34	ENSGT00390000016221 #35	ENSGT00940000160490 #36	ENSGT00940000154127.A #37
Mus	ANCESTRAL SPECIES	14	ENSGT00850000132319.a.a.b #7	ENSGT00390000000470 #8	ENSGT00390000005639.a.a #9	ENSGT00390000010628 #10	ENSGT00530000063586.b #11	ENSGT00940000154372.a.b #12	ENSGT00390000017291.a #13	ENSGT00390000017291.b #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #26	ENSGT00940000157037.a #27	ENSGT00940000159350 #28	ENSGT00390000012901 #29	ENSGT00390000003477 #30	ENSGT00940000158750 #31	ENSGT00390000000483.b #32	ENSGT00390000014853 #33	ENSGT00940000161623 #34	ENSGT00390000016221 #35	ENSGT00940000160490 #36	ENSGT00940000154127.A #37
Shrew mouse	MODERN SPECIES	4	Clrn2 (MGP_PahariEiJ_G0016984) #7	Qdpr (MGP_PahariEiJ_G0016983) #8	Ldb2 (MGP_PahariEiJ_G0016982) #9	Tapt1 (MGP_PahariEiJ_G0016981) #10	Prom1 (MGP_PahariEiJ_G0016980) #11	Fgfbp1 (MGP_PahariEiJ_G0016979) #12	Cd38 (MGP_PahariEiJ_G0016978) #13	Bst1 (MGP_PahariEiJ_G0016977) #14	Fbxl5 (MGP_PahariEiJ_G0016976) #15	Cc2d2a (MGP_PahariEiJ_G0016975) #16	C1qtnf7 (MGP_PahariEiJ_G0016974) #17	Cpeb2 (MGP_PahariEiJ_G0016973) #18	Bod1l (MGP_PahariEiJ_G0016972) #19	Nkx3-2 (MGP_PahariEiJ_G0016971) #20	Rab28 (MGP_PahariEiJ_G0016970) #21	Hs3st1 (MGP_PahariEiJ_G0016969) #22	Clnk (MGP_PahariEiJ_G0016968) #23	Zfp518b (MGP_PahariEiJ_G0016967) #24	Wdr1 (MGP_PahariEiJ_G0016966) #25	Slc2a9 (MGP_PahariEiJ_G0016965) #26	Drd5 (MGP_PahariEiJ_G0016964) #27	Otop1 (MGP_PahariEiJ_G0016963) #28	Tmem128 (MGP_PahariEiJ_G0016962) #29	Lyar (MGP_PahariEiJ_G0016961) #30	Zbtb49 (MGP_PahariEiJ_G0016960) #31	Nsg1 (MGP_PahariEiJ_G0016959) #32	Stx18 (MGP_PahariEiJ_G0016958) #33	Msx1 (MGP_PahariEiJ_G0016957) #34	Cytl1 (MGP_PahariEiJ_G0016956) #35	Stk32b (MGP_PahariEiJ_G0016955) #36	Evc2 (MGP_PahariEiJ_G0016954) #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00850000132319.a.a.b #7	ENSGT00390000000470 #8	ENSGT00390000005639.a.a #9	ENSGT00390000010628 #10	ENSGT00530000063586.b #11	ENSGT00940000154372.a.b #12	ENSGT00390000017291.a #13	ENSGT00390000017291.b #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #26	ENSGT00940000157037.a #27	ENSGT00940000159350 #28	ENSGT00390000012901 #29	ENSGT00390000003477 #30	ENSGT00940000158750 #31	ENSGT00390000000483.b #32	ENSGT00390000014853 #33	ENSGT00940000161623 #34	ENSGT00390000016221 #35	ENSGT00940000160490 #36	ENSGT00940000154127.A #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00850000132319.a.a.b #7	ENSGT00390000000470 #8	ENSGT00390000005639.a.a #9	ENSGT00390000010628 #10	ENSGT00530000063586.b #11	ENSGT00940000154372.a.b #12	ENSGT00390000017291.a #13	ENSGT00390000017291.b #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #26	ENSGT00940000157037.a #27	ENSGT00940000159350 #28	ENSGT00390000012901 #29	ENSGT00390000003477 #30	ENSGT00940000158750 #31	ENSGT00390000000483.b #32	ENSGT00390000014853 #33	ENSGT00940000161623 #34	ENSGT00390000016221 #35	ENSGT00940000160490 #36	ENSGT00940000154127.A #37
Mouse	MODERN SPECIES	14	Qdpr (ENSMUSG00000015806) #8	Ldb2 (ENSMUSG00000039706) #9	Tapt1 (ENSMUSG00000046985) #10	Prom1 (ENSMUSG00000029086) #11	Fgfbp1 (ENSMUSG00000048373) #12	Ppihl (ENSMUSG00000033036)	Cd38 (ENSMUSG00000029084) #13	Bst1 (ENSMUSG00000029082) #14	Fbxl5 (ENSMUSG00000039753) #15	Cc2d2a (ENSMUSG00000039765) #16	C1qtnf7 (ENSMUSG00000061535) #17	Cpeb2 (ENSMUSG00000039782) #18	Bod1l (ENSMUSG00000061755) #19	Nkx3-2 (ENSMUSG00000049691) #20	Rab28 (ENSMUSG00000029128) #21	Hs3st1 (ENSMUSG00000051022) #22	Clnk (ENSMUSG00000039315) #23	Zfp518b (ENSMUSG00000046572) #24	Wdr1 (ENSMUSG00000005103) #25	Slc2a9 (ENSMUSG00000005107) #26	Drd5 (ENSMUSG00000039358) #27	Otop1 (ENSMUSG00000051596) #28	Tmem128 (ENSMUSG00000067365) #29	Lyar (ENSMUSG00000067367) #30	Zbtb49 (ENSMUSG00000029127) #31	Nsg1 (ENSMUSG00000029126) #32	Stx18 (ENSMUSG00000029125) #33	Msx1 (ENSMUSG00000048450) #34	Cytl1 (ENSMUSG00000062329) #35	Stk32b (ENSMUSG00000029123) #36	Evc2 (ENSMUSG00000050248) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00850000132319.a.a.b #7	ENSGT00390000000470 #8	ENSGT00390000005639.a.a #9	ENSGT00390000010628 #10	ENSGT00530000063586.b #11	ENSGT00940000154372.a.b #12	ENSGT00390000017291.a #13	ENSGT00390000017291.b #14	ENSGT00390000006172 #15	ENSGT00940000155482 #16	ENSGT00940000159588 #17	ENSGT00940000160357 #18	ENSGT00940000156198.c.a #19	ENSGT00940000161843 #20	ENSGT00940000161833 #21	ENSGT00940000160449 #22	ENSGT00940000161846 #23	ENSGT00940000160595.b #24	ENSGT00390000009416 #25	ENSGT00940000159192 #26	ENSGT00940000157037.a #27	ENSGT00940000159350 #28	ENSGT00390000012901 #29	ENSGT00390000003477 #30	ENSGT00940000158750 #31	ENSGT00390000000483.b #32	ENSGT00390000014853 #33	ENSGT00940000161623 #34	ENSGT00390000016221 #35	ENSGT00940000160490 #36	ENSGT00940000154127.A #37
Steppe mouse	MODERN SPECIES	2397																Hs3st1 (ENSMSIG00000030013) #22
spretus	MODERN SPECIES	14	Qdpr (MGP_SPRETEiJ_G0028197) #8	Ldb2 (MGP_SPRETEiJ_G0028196) #9	Tapt1 (MGP_SPRETEiJ_G0028195) #10	Prom1 (MGP_SPRETEiJ_G0028194) #11	Fgfbp1 (MGP_SPRETEiJ_G0028193) #12	Cd38 (MGP_SPRETEiJ_G0028192) #13	Bst1 (MGP_SPRETEiJ_G0028191) #14	Fbxl5 (MGP_SPRETEiJ_G0028190) #15	Cc2d2a (MGP_SPRETEiJ_G0028189) #16	C1qtnf7 (MGP_SPRETEiJ_G0028188) #17	Cpeb2 (MGP_SPRETEiJ_G0028187) #18	MGP_SPRETEiJ_G0028186	Bod1l (MGP_SPRETEiJ_G0028185) #19	Nkx3-2 (MGP_SPRETEiJ_G0028184) #20	Rab28 (MGP_SPRETEiJ_G0028183) #21	Hs3st1 (MGP_SPRETEiJ_G0028182) #22	Clnk (MGP_SPRETEiJ_G0028181) #23	Zfp518b (MGP_SPRETEiJ_G0028180) #24	Wdr1 (MGP_SPRETEiJ_G0028179) #25	Slc2a9 (MGP_SPRETEiJ_G0028178) #26	Drd5 (MGP_SPRETEiJ_G0028177) #27	Otop1 (MGP_SPRETEiJ_G0028176) #28	Tmem128 (MGP_SPRETEiJ_G0028175) #29	Lyar (MGP_SPRETEiJ_G0028174) #30	Zbtb49 (MGP_SPRETEiJ_G0028173) #31	Nsg1 (MGP_SPRETEiJ_G0028172) #32	Stx18 (MGP_SPRETEiJ_G0028171) #33	Msx1 (MGP_SPRETEiJ_G0028170) #34	MGP_SPRETEiJ_G0028169	Cytl1 (MGP_SPRETEiJ_G0028168) #35	Stk32b (MGP_SPRETEiJ_G0028167) #36
Ryukyu mouse	MODERN SPECIES	14	Ldb2 (MGP_CAROLIEiJ_G0027200) #9	Tapt1 (MGP_CAROLIEiJ_G0027199) #10	Prom1 (MGP_CAROLIEiJ_G0027198) #11	Fgfbp1 (MGP_CAROLIEiJ_G0027197) #12	Cd38 (MGP_CAROLIEiJ_G0027196) #13	Bst1 (MGP_CAROLIEiJ_G0027195) #14	Fbxl5 (MGP_CAROLIEiJ_G0027194) #15	Cc2d2a (MGP_CAROLIEiJ_G0027193) #16	C1qtnf7 (MGP_CAROLIEiJ_G0027192) #17	Cpeb2 (MGP_CAROLIEiJ_G0027191) #18	MGP_CAROLIEiJ_G0027190	MGP_CAROLIEiJ_G0027189	Bod1l (MGP_CAROLIEiJ_G0027188) #19	Nkx3-2 (MGP_CAROLIEiJ_G0027187) #20	Rab28 (MGP_CAROLIEiJ_G0027186) #21	Hs3st1 (MGP_CAROLIEiJ_G0027185) #22	Clnk (MGP_CAROLIEiJ_G0027184) #23	Zfp518b (MGP_CAROLIEiJ_G0027183) #24	Wdr1 (MGP_CAROLIEiJ_G0027182) #25	Slc2a9 (MGP_CAROLIEiJ_G0027181) #26	Drd5 (MGP_CAROLIEiJ_G0027180) #27	Otop1 (MGP_CAROLIEiJ_G0027179) #28	Tmem128 (MGP_CAROLIEiJ_G0027178) #29	Lyar (MGP_CAROLIEiJ_G0027177) #30	Zbtb49 (MGP_CAROLIEiJ_G0027176) #31	Nsg1 (MGP_CAROLIEiJ_G0027175) #32	Stx18 (MGP_CAROLIEiJ_G0027174) #33	Msx1 (MGP_CAROLIEiJ_G0027173) #34	Cytl1 (MGP_CAROLIEiJ_G0027172) #35	Stk32b (MGP_CAROLIEiJ_G0027171) #36	Evc2 (MGP_CAROLIEiJ_G0027170) #37
Rat	MODERN SPECIES	5	Apex2l1 (ENSRNOG00000026046)	Cd38 (ENSRNOG00000003069) #13	Bst1 (ENSRNOG00000003064) #14	Fbxl5 (ENSRNOG00000005261) #15	Cc2d2a (ENSRNOG00000059715) #16	C1qtnf7 (ENSRNOG00000005094) #17	Isca2-ps1 (ENSRNOG00000005077)	Cpeb2 (ENSRNOG00000005043) #18	Rab5al1 (ENSRNOG00000062595)	Rps11-ps1 (ENSRNOG00000064268)	RGD1561694 (ENSRNOG00000029107)	Bod1l1 (ENSRNOG00000050437) #19	Nkx3-2 (ENSRNOG00000060782) #20	Rab28 (ENSRNOG00000017074) #21	AABR07015759.1 (ENSRNOG00000033640)	Hs3st1 (ENSRNOG00000068537) #22	Clnk (ENSRNOG00000051169) #23	Zfp518b (ENSRNOG00000028534) #24	Wdr1 (ENSRNOG00000028498) #25	Slc2a9 (ENSRNOG00000005302) #26	Drd5 (ENSRNOG00000005338) #27	Otop1 (ENSRNOG00000028423) #28	Tmem128 (ENSRNOG00000005346) #29	Lyar (ENSRNOG00000005374) #30	Zbtb49 (ENSRNOG00000005633) #31	Nsg1 (ENSRNOG00000005700) #32	Stx18 (ENSRNOG00000006139) #33	Cytl1 (ENSRNOG00000028108) #35	Stk32b (ENSRNOG00000031397) #36	Evc2 (ENSRNOG00000007025) #37	Evc (ENSRNOG00000007564) ##37