Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT01030000234972	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815.g.b #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000164565	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815.g.b #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.e.b #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Dingo	MODERN SPECIES	276	TAP1 (ENSCAFG00020002523) #7	PSMB9 (ENSCAFG00020002528) #8	HLA-DMB (ENSCAFG00020002532) #9	HLA-DMA (ENSCAFG00020002536) #10	BRD2 (ENSCAFG00020002542) #11	HLA-DOA (ENSCAFG00020002545) #12	ENSCAFG00020002592 #13	ENSCAFG00020003072 #14	ENSCAFG00020003093 #15	RXRB (ENSCAFG00020003098) #16	SLC39A7 (ENSCAFG00020003166) #17	HSD17B8 (ENSCAFG00020003175) #18	RING1 (ENSCAFG00020003221) #19	ENSCAFG00020003224 #20	RPS18 (ENSCAFG00020003254) #21	B3GALT4 (ENSCAFG00020003269) #22	WDR46 (ENSCAFG00020003271) #23	ENSCAFG00020003316 #24	RGL2 (ENSCAFG00020003330) #25	TAPBP (ENSCAFG00020003337) #26	ZBTB22 (ENSCAFG00020003345) #27	DAXX (ENSCAFG00020003346) #28	SMIM40 (ENSCAFG00020003364) #29	PHF1 (ENSCAFG00020003366) #30	ENSCAFG00020003379 #31	CUTA (ENSCAFG00020003385) #32	SYNGAP1 (ENSCAFG00020003455) #33	ZBTB9 (ENSCAFG00020003798) #34	BAK1 (ENSCAFG00020003807) #35	ENSCAFG00020003809 #36	ENSCAFG00020003859 #37
Dog	MODERN SPECIES	3	TAP2 (ENSCAFG00845017879)	PSMB8 (ENSCAFG00845018353) #7	PSMB9 (ENSCAFG00845018485) #8	DLA-DMB (ENSCAFG00845018536) #9	DLA-DMA (ENSCAFG00845018613) #10	BRD2 (ENSCAFG00845018726) #11	DLA-DOA (ENSCAFG00845018933) #12	ENSCAFG00845019114 #13	COL11A2 (ENSCAFG00845019587) #15	RXRB (ENSCAFG00845020447) #16	SLC39A7 (ENSCAFG00845020536) #17	HSD17B8 (ENSCAFG00845020603) #18	RING1 (ENSCAFG00845020668) #19	VPS52 (ENSCAFG00845020730) #20	RPS18 (ENSCAFG00845020845) ##21	B3GALT4 (ENSCAFG00845020962) #22	WDR46 (ENSCAFG00845021010) #23	PFDN6 (ENSCAFG00845021180) #24	RGL2 (ENSCAFG00845021267) #25	TAPBP (ENSCAFG00845021421) #26	ZBTB22 (ENSCAFG00845021534) #27	DAXX (ENSCAFG00845021574) #28	SMIM40 (ENSCAFG00845021695) #29	KIFC1 (ENSCAFG00845021754)	PHF1 (ENSCAFG00845021851) #31	CUTA (ENSCAFG00845022043) #32	SYNGAP1 (ENSCAFG00845022368) #33	ZBTB9 (ENSCAFG00845023405) #34	ENSCAFG00845023466	BAK1 (ENSCAFG00845023547) #35	ENSCAFG00845023632 #36
Red fox	MODERN SPECIES	7	PSMB8 (ENSVVUG00000025115)	TAP1 (ENSVVUG00000025116) #7	PSMB9 (ENSVVUG00000025119) #8	HLA-DMB (ENSVVUG00000025122) #9	HLA-DMA (ENSVVUG00000025127) #10	BRD2 (ENSVVUG00000025130) #11	HLA-DOA (ENSVVUG00000025133) #12	HLA-DPA1 (ENSVVUG00000025137)	ENSVVUG00000025174 #13	RXRB (ENSVVUG00000025262) #16	SLC39A7 (ENSVVUG00000025265) #17	HSD17B8 (ENSVVUG00000025268) #18	RING1 (ENSVVUG00000025271) #19	ENSVVUG00000025286 #20	RPS18 (ENSVVUG00000025443) #21	B3GALT4 (ENSVVUG00000025447) #22	WDR46 (ENSVVUG00000025460) #23	PFDN6 (ENSVVUG00000025545) #24	RGL2 (ENSVVUG00000025551) #25	TAPBP (ENSVVUG00000025586) #26	ZBTB22 (ENSVVUG00000025590) #27	DAXX (ENSVVUG00000025591) #28	SMIM40 (ENSVVUG00000025592) #29	ENSVVUG00000025594	PHF1 (ENSVVUG00000025614) #31	CUTA (ENSVVUG00000025622) #32	SYNGAP1 (ENSVVUG00000025640) #33	ZBTB9 (ENSVVUG00000025646) #34	BAK1 (ENSVVUG00000025650) #35	ENSVVUG00000025665 #37	ENSVVUG00000025902 #37
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Ursidae	ANCESTRAL SPECIES	37	ENSGT00940000159897 #8	ENSGT00950000183198.c.a.b.b.j	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b.w #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.d #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Ursus	ANCESTRAL SPECIES	53	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00950000183198.c.a.b.b.j	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b.w #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.d #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
American black bear	MODERN SPECIES	175							HLA-DOA (ENSUAMG00000026886) #12	ENSUAMG00000026889	COL11A2 (ENSUAMG00000026897) #15	RXRB (ENSUAMG00000026918) #16	SLC39A7 (ENSUAMG00000026920) #17	HSD17B8 (ENSUAMG00000026922) #18	RING1 (ENSUAMG00000026924) #19	VPS52 (ENSUAMG00000026926) #20	RPS18 (ENSUAMG00000026928) #21	B3GALT4 (ENSUAMG00000026933) #22	WDR46 (ENSUAMG00000026936) #23	PFDN6 (ENSUAMG00000026943) #24	RGL2 (ENSUAMG00000026945) #25	TAPBP (ENSUAMG00000026951) #26	ZBTB22 (ENSUAMG00000026952) #27	DAXX (ENSUAMG00000026953) #28	SMIM40 (ENSUAMG00000026954) #29	KIFC1 (ENSUAMG00000026955)	PHF1 (ENSUAMG00000026961) #31	CUTA (ENSUAMG00000026966) #32	SYNGAP1 (ENSUAMG00000000065) #33	ZBTB9 (ENSUAMG00000000601) #34	BAK1 (ENSUAMG00000000611) #35	ENSUAMG00000000617 #36	ITPR3 (ENSUAMG00000000807) #37
Giant Panda	MODERN SPECIES	15	TAP1 (ENSAMEG00000001976) #7	PSMB9 (ENSAMEG00000001961) #8	ENSAMEG00000027435	HLA-DMB (ENSAMEG00000001952) #9	BRD2 (ENSAMEG00000001926) #11	HLA-DOA (ENSAMEG00000001908) #12	HLA-DPA1 (ENSAMEG00000001901)	ENSAMEG00000001900 #13	COL11A2 (ENSAMEG00000001744) #15	RXRB (ENSAMEG00000001719) #16	SLC39A7 (ENSAMEG00000001707) #17	HSD17B8 (ENSAMEG00000001698) #18	RING1 (ENSAMEG00000001680) #19	VPS52 (ENSAMEG00000001640) #20	RPS18 (ENSAMEG00000001623) #21	B3GALT4 (ENSAMEG00000019752) #22	WDR46 (ENSAMEG00000001583) #23	PFDN6 (ENSAMEG00000001576) #24	RGL2 (ENSAMEG00000001533) #25	TAPBP (ENSAMEG00000001518) #26	ZBTB22 (ENSAMEG00000019741) #27	DAXX (ENSAMEG00000001484) #28	SMIM40 (ENSAMEG00000030691) #29	KIFC1 (ENSAMEG00000001458)	PHF1 (ENSAMEG00000001427) #31	CUTA (ENSAMEG00000001407) #32	SYNGAP1 (ENSAMEG00000001379) #33	ZBTB9 (ENSAMEG00000019731) #34	ENSAMEG00000001363 #35	ENSAMEG00000001355 #36	ITPR3 (ENSAMEG00000001124) #37
Mustelinae	ANCESTRAL SPECIES	65	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000164565	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Ferret	MODERN SPECIES	318	PSMB9 (ENSMPUG00000001940) #8	HLA-DMB (ENSMPUG00000001943) #9	HLA-DMA (ENSMPUG00000001944) #10	ENSMPUG00000001954	BRD2 (ENSMPUG00000001955) #11	HLA-DOA (ENSMPUG00000001958) #12	ENSMPUG00000001959	HLA-DPA1 (ENSMPUG00000001961)	ENSMPUG00000001964 #13	COL11A2 (ENSMPUG00000001968) #15	RXRB (ENSMPUG00000002273) #16	SLC39A7 (ENSMPUG00000002276) #17	RING1 (ENSMPUG00000002279) #19	VPS52 (ENSMPUG00000002300) #20	RPS18 (ENSMPUG00000002306) ##21	B3GALT4 (ENSMPUG00000018786) #22	ENSMPUG00000002317 #23	PFDN6 (ENSMPUG00000002364) #24	RGL2 (ENSMPUG00000002376) #25	TAPBP (ENSMPUG00000002383) #26	ZBTB22 (ENSMPUG00000018787) #27	DAXX (ENSMPUG00000002405) #28	KIFC1 (ENSMPUG00000002409)	PHF1 (ENSMPUG00000002414) #31	CUTA (ENSMPUG00000002420) #32	SYNGAP1 (ENSMPUG00000002431) #33	ZBTB9 (ENSMPUG00000018789) #34	BAK1 (ENSMPUG00000002438) #35	ENSMPUG00000002455	ENSMPUG00000002458 #36	ENSMPUG00000002462 #37
American mink	MODERN SPECIES	258													ENSNVIG00000013094 #19	VPS52 (ENSNVIG00000013051) #20	RPS18 (ENSNVIG00000013029) #21	B3GALT4 (ENSNVIG00000013023) #22	WDR46 (ENSNVIG00000013009) #23	PFDN6 (ENSNVIG00000012998) #24	RGL2 (ENSNVIG00000012961) #25	TAPBP (ENSNVIG00000012929) #26	ZBTB22 (ENSNVIG00000012910) #27	DAXX (ENSNVIG00000012888) #28	SMIM40 (ENSNVIG00000012878) #29	ENSNVIG00000012872	PHF1 (ENSNVIG00000012814) #31	CUTA (ENSNVIG00000012780) #32	SYNGAP1 (ENSNVIG00000012712) #33	ZBTB9 (ENSNVIG00000012705) #34	BAK (ENSNVIG00000012694) #35	ENSNVIG00000012687 #36	ITPR3 (ENSNVIG00000012548) #37
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES	54															ENSGT00390000012691.d ##21	ENSGT00940000161798.g #22
Cat	MODERN SPECIES	236	ENSFCAG00000040910 #9	ENSFCAG00000041486 #10	ENSFCAG00000009696 #11	ENSFCAG00000009697 #12	ENSFCAG00000012247	ENSFCAG00000041523 #13	ENSFCAG00000047214 #15	ENSFCAG00000046454 #15	ENSFCAG00000042526 #16	ENSFCAG00000050544	ENSFCAG00000046098 #17	HSD17B8 (ENSFCAG00000006986) #18	ENSFCAG00000041942 #19	VPS52 (ENSFCAG00000004011) #20	ENSFCAG00000041843 #21	ENSFCAG00000052529 #22	ENSFCAG00000051171 #23	ENSFCAG00000028199 #24	ENSFCAG00000029182 #25	ENSFCAG00000043390 #26	ENSFCAG00000049571 #27	DAXX (ENSFCAG00000004020) #28	ENSFCAG00000053744 #29	ENSFCAG00000052131	ENSFCAG00000041443	ENSFCAG00000040474	ENSFCAG00000009202	ENSFCAG00000045700	ENSFCAG00000043821	ENSFCAG00000042456 #7	ENSFCAG00000044069 #8
Panthera	ANCESTRAL SPECIES	99															ENSGT00390000012691.d ##21	ENSGT00940000161798.g #22
Tiger	MODERN SPECIES	415	PSMB9 (ENSPTIG00000006050) #8	HLA-DMB (ENSPTIG00000006035) #9	HLA-DMA (ENSPTIG00000006011) #10	ENSPTIG00000006002	BRD2 (ENSPTIG00000005977) #11	HLA-DOA (ENSPTIG00000005964) #12	HLA-DPA1 (ENSPTIG00000005948)	HLA-DPB1 (ENSPTIG00000005931) #13	COL11A2 (ENSPTIG00000005735) #15	RXRB (ENSPTIG00000005607) #16	SLC39A7 (ENSPTIG00000005581) #17	HSD17B8 (ENSPTIG00000005554) #18	RING1 (ENSPTIG00000005545) #19	VPS52 (ENSPTIG00000005504) #20	RPS18 (ENSPTIG00000005481) ##21	B3GALT4 (ENSPTIG00000005451) #22	WDR46 (ENSPTIG00000005439) #23	PFDN6 (ENSPTIG00000005409) #24	RGL2 (ENSPTIG00000005355) #25	TAPBP (ENSPTIG00000005317) #26	DAXX (ENSPTIG00000005244) #28	KIFC1 (ENSPTIG00000005208)	PHF1 (ENSPTIG00000005011) #31	CUTA (ENSPTIG00000005095) #32	SYNGAP1 (ENSPTIG00000004711) #33	ZBTB9 (ENSPTIG00000009189) #34	BAK1 (ENSPTIG00000004514) #35	ENSPTIG00000004464 #36	ITPR3 (ENSPTIG00000003549) #37	UQCC2 (ENSPTIG00000003455)	IP6K3 (ENSPTIG00000003356)
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390.p #13	ENSGT00940000162390.q #13	ENSGT00940000159762.cc #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798.h #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT01000000221634	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390.p #13	ENSGT00940000159762.cc #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798.h #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT01000000221634	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A.k #35	ENSGT00390000006663 #36
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390.p #13	ENSGT00940000159762.cc #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798.h #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT01000000221634	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A.k #35	ENSGT00390000006663 #36
leopard	MODERN SPECIES	30	HLA-DMB (ENSPPRG00000004964) #9	HLA-DMA (ENSPPRG00000004582) #10	ENSPPRG00000003175	ENSPPRG00000003003 #11	ENSPPRG00000002715 #11	HLA-DOA (ENSPPRG00000002484) #12	HLA-DPA1 (ENSPPRG00000002267)	HLA-DPB1 (ENSPPRG00000002022) #13	COL11A2 (ENSPPRG00000001194) #15	RXRB (ENSPPRG00000010222) #16	SLC39A7 (ENSPPRG00000009227) #17	HSD17B8 (ENSPPRG00000008960) #18	RING1 (ENSPPRG00000008873) #19	VPS52 (ENSPPRG00000007986) #20	RPS18 (ENSPPRG00000006936) #21	B3GALT4 (ENSPPRG00000006033) #22	WDR46 (ENSPPRG00000005881) #23	PFDN6 (ENSPPRG00000005109) #24	RGL2 (ENSPPRG00000004409) #25	TAPBP (ENSPPRG00000003578) #26	ZBTB22 (ENSPPRG00000020462) #27	DAXX (ENSPPRG00000002274) #28	KIFC1 (ENSPPRG00000000899)	PHF1 (ENSPPRG00000000222) #31	CUTA (ENSPPRG00000023270) #32	SYNGAP1 (ENSPPRG00000022184) #33	ZBTB9 (ENSPPRG00000020032) #34	ENSPPRG00000013423	ENSPPRG00000012994 #35	ENSPPRG00000012361 #36	ITPR3 (ENSPPRG00000011688) #37
lion	MODERN SPECIES	5	PSMB9 (ENSPLOG00000006713) #8	ENSPLOG00000006735	HLA-DMB (ENSPLOG00000006753) #9	HLA-DMA (ENSPLOG00000006786) #10	BRD2 (ENSPLOG00000006871) #11	HLA-DOA (ENSPLOG00000006926) #12	HLA-DPA1 (ENSPLOG00000006949)	ENSPLOG00000007166 #13	COL11A2 (ENSPLOG00000007928) #15	RXRB (ENSPLOG00000009094) #16	SLC39A7 (ENSPLOG00000009206) #17	HSD17B8 (ENSPLOG00000009241) #18	RING1 (ENSPLOG00000009313) #19	VPS52 (ENSPLOG00000009344) #20	RPS18 (ENSPLOG00000009471) #21	B3GALT4 (ENSPLOG00000009525) #22	WDR46 (ENSPLOG00000009542) #23	PFDN6 (ENSPLOG00000009614) #24	RGL2 (ENSPLOG00000009682) #25	TAPBP (ENSPLOG00000009777) #26	ZBTB22 (ENSPLOG00000009838) #27	DAXX (ENSPLOG00000009856) #28	SMIM40 (ENSPLOG00000009910) #29	ENSPLOG00000009926	KIFC1 (ENSPLOG00000009952)	PHF1 (ENSPLOG00000010046) #31	CUTA (ENSPLOG00000010187) #32	SYNGAP1 (ENSPLOG00000010427) #33	ZBTB9 (ENSPLOG00000011169) #34	ENSPLOG00000011229 #35	ENSPLOG00000011334 #36
Cat	MODERN SPECIES	236	ENSFCAG00000042456 #7	ENSFCAG00000044069 #8	ENSFCAG00000050701	ENSFCAG00000045369 #9	ENSFCAG00000009442 #10	ENSFCAG00000042841 #11	ENSFCAG00000042732 #12	ENSFCAG00000044012	ENSFCAG00000041258 #13	COL11A2 (ENSFCAG00000004005) #15	ENSFCAG00000006981 #16	ENSFCAG00000006984 #17	ENSFCAG00000043560 #20	ENSFCAG00000004010 #19	ENSFCAG00000045696 #21	B3GALT4 (ENSFCAG00000004015) #22	WDR46 (ENSFCAG00000004016) #23	ENSFCAG00000046037 #24	ENSFCAG00000042019 #25	ENSFCAG00000004017 #26	ENSFCAG00000050206 #27	ENSFCAG00000046536	ENSFCAG00000047002 #29	KIFC1 (ENSFCAG00000013653)	PHF1 (ENSFCAG00000013654) #31	CUTA (ENSFCAG00000013655) #32	SYNGAP1 (ENSFCAG00000013656) #33	ZBTB9 (ENSFCAG00000027926) #34	BAK1 (ENSFCAG00000032638) #35	GGNBP1 (ENSFCAG00000022517) #36	ITPR3 (ENSFCAG00000013659) #37
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Equus	ANCESTRAL SPECIES	10	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00860000136081	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Horse	MODERN SPECIES	12	TAP2 (ENSECAG00000007152)	PSMB9 (ENSECAG00000016898) #8	PSMB8 (ENSECAG00000018887)	TAP1 (ENSECAG00000022610) #7	HLA-DMB (ENSECAG00000021796) #9	HLA-DMA (ENSECAG00000003669) #10	ENSECAG00000042051	BRD2 (ENSECAG00000012089) #11	HLA-DOA (ENSECAG00000006603) #12	COL11A2 (ENSECAG00000029028) #15	RXRB (ENSECAG00000023041) #16	SLC39A7 (ENSECAG00000004794) #17	HSD17B8 (ENSECAG00000058465) #18	RING1 (ENSECAG00000013736) #19	VPS52 (ENSECAG00000019702) #20	B3GALT4 (ENSECAG00000052593) #22	WDR46 (ENSECAG00000016548) #23	PFDN6 (ENSECAG00000055205) #24	RGL2 (ENSECAG00000000906) #25	TAPBP (ENSECAG00000015448) #26	ZBTB22 (ENSECAG00000019536) #27	DAXX (ENSECAG00000021055) #28	KIFC1 (ENSECAG00000024196)	PHF1 (ENSECAG00000001042) #31	CUTA (ENSECAG00000016206) #32	SYNGAP1 (ENSECAG00000020868) #33	ZBTB9 (ENSECAG00000001767) #34	GGNBP1 (ENSECAG00000004978) #36	BAK1 (ENSECAG00000023902) #35	ITPR3 (ENSECAG00000007328) #37	ENSECAG00000031664
Donkey	MODERN SPECIES	28	TAP2 (ENSEASG00005020743)	PSMB8 (ENSEASG00005020748)	TAP1 (ENSEASG00005020750) #7	PSMB9 (ENSEASG00005020754) #8	HLA-DMB (ENSEASG00005020759) #9	HLA-DMA (ENSEASG00005020764) #10	ENSEASG00005032605	BRD2 (ENSEASG00005020770) #11	HLA-DOA (ENSEASG00005020773) #12	COL11A2 (ENSEASG00005030115) #15	RXRB (ENSEASG00005020792) #16	SLC39A7 (ENSEASG00005020798) #17	RING1 (ENSEASG00005020805) #19	VPS52 (ENSEASG00005020809) #20	RPS18 (ENSEASG00005020817) #21	B3GALT4 (ENSEASG00005035058) #22	WDR46 (ENSEASG00005020823) #23	PFDN6 (ENSEASG00005035417) #24	RGL2 (ENSEASG00005020835) #25	ZBTB22 (ENSEASG00005020850) #27	DAXX (ENSEASG00005020852) #28	SMIM40 (ENSEASG00005020856) #29	KIFC1 (ENSEASG00005020860)	PHF1 (ENSEASG00005020866) #31	ENSEASG00005020871 #32	SYNGAP1 (ENSEASG00005020883) #33	ZBTB9 (ENSEASG00005036178) #34	BAK1 (ENSEASG00005020896) #35	ENSEASG00005020902 #36	ITPR3 (ENSEASG00005020906) #37	UQCC2 (ENSEASG00005020919)
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Greater horseshoe bat	MODERN SPECIES	21	PSMB8 (ENSRFEG00010012709)	TAP1 (ENSRFEG00010012779) #7	PSMB9 (ENSRFEG00010012800) #8	ENSRFEG00010012948 #10	BRD2 (ENSRFEG00010013276) #11	HLA-DOA (ENSRFEG00010013359) #12	HLA-DPA1 (ENSRFEG00010013424)	HLA-DPB1 (ENSRFEG00010013529) #13	COL11A2 (ENSRFEG00010013940) #15	RXRB (ENSRFEG00010014125) #16	SLC39A7 (ENSRFEG00010014223) #17	HSD17B8 (ENSRFEG00010014277) #18	RING1 (ENSRFEG00010014424) #19	VPS52 (ENSRFEG00010014510) #20	ENSRFEG00010014573 #21	B3GALT4 (ENSRFEG00010014737) #22	WDR46 (ENSRFEG00010014756) #23	ENSRFEG00010014998 #24	RGL2 (ENSRFEG00010015178) #25	TAPBP (ENSRFEG00010015262) #26	ZBTB22 (ENSRFEG00010015390) #27	DAXX (ENSRFEG00010015408) #28	SMIM40 (ENSRFEG00010015468) #29	ENSRFEG00010015490	KIFC1 (ENSRFEG00010015527)	PHF1 (ENSRFEG00010015595) #31	CUTA (ENSRFEG00010015764) #32	SYNGAP1 (ENSRFEG00010015951) #33	ZBTB9 (ENSRFEG00010016671) #34	BAK1 (ENSRFEG00010016690) #35	ENSRFEG00010016790 #36
Microbat	MODERN SPECIES	1613										RXRB (ENSMLUG00000014163) #16	SLC39A7 (ENSMLUG00000014165) #17	HSD17B8 (ENSMLUG00000027777) #18	RING1 (ENSMLUG00000024412) #19	VPS52 (ENSMLUG00000007294) #20	ENSMLUG00000007360 ##21	B3GALT4 (ENSMLUG00000007384) #22	WDR46 (ENSMLUG00000007398) #23	PFDN6 (ENSMLUG00000007450) #24	RGL2 (ENSMLUG00000007475) #25	TAPBP (ENSMLUG00000007536) #26	ZBTB22 (ENSMLUG00000017554) #27	DAXX (ENSMLUG00000007551) #28	KIFC1 (ENSMLUG00000012031)	PHF1 (ENSMLUG00000012046) #31	CUTA (ENSMLUG00000012064) #32	SYNGAP1 (ENSMLUG00000012071) #33	ENSMLUG00000000948 #36
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT01030000234972	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Suina	ANCESTRAL SPECIES	17	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT00940000157134	ENSGT00390000009790	ENSGT00940000155064	ENSGT00390000017590	ENSGT00390000011354	ENSGT00390000016954	ENSGT00940000155008.C	ENSGT00940000162318	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.k #24	ENSGT01030000234972	ENSGT00390000010512.l #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35
Pig	MODERN SPECIES	15	MLIP (ENSSSCG00000001485)	LRRC1 (ENSSSCG00000001486)	KLHL31 (ENSSSCG00000001487)	GCLC (ENSSSCG00000001488)	KHDRBS2 (ENSSSCG00000001490)	ENSSSCG00000062933	PRIM2 (ENSSSCG00000001493)	RAB23 (ENSSSCG00000029539)	BAG2 (ENSSSCG00000033526)	ZNF451 (ENSSSCG00000001497)	BEND6 (ENSSSCG00000001498)	DST (ENSSSCG00000001499)	COL21A1 (ENSSSCG00000001500)	VPS52 (ENSSSCG00000001501) #20	RPS18 (ENSSSCG00000001502) #21	B3GALT4 (ENSSSCG00000001503) #22	WDR46 (ENSSSCG00000001504) #23	ENSSSCG00000001505 #24	RGL2 (ENSSSCG00000001506) #25	TAPBP (ENSSSCG00000001507) #26	ZBTB22 (ENSSSCG00000054523) #27	DAXX (ENSSSCG00000001509) #28	SMIM40 (ENSSSCG00000059451) #29	KIFC1 (ENSSSCG00000001510)	PHF1 (ENSSSCG00000001511) #31	CUTA (ENSSSCG00000001512) #32	SYNGAP1 (ENSSSCG00000001513) #33	ZBTB9 (ENSSSCG00000060402) #34	ENSSSCG00000001516 #35	ENSSSCG00000001517 #36	ITPR3 (ENSSSCG00000001518) #37
Chacoan peccary	MODERN SPECIES	782	TINAG (ENSCWAG00000012390)	MLIP (ENSCWAG00000011825)	LRRC1 (ENSCWAG00000011723)	KLHL31 (ENSCWAG00000011695)	GCLC (ENSCWAG00000011415)	KHDRBS2 (ENSCWAG00000011294)	PRIM2 (ENSCWAG00000011218)	RAB23 (ENSCWAG00000011155)	BAG2 (ENSCWAG00000011125)	ZNF451 (ENSCWAG00000010999)	BEND6 (ENSCWAG00000010920)	DST (ENSCWAG00000007332)	COL21A1 (ENSCWAG00000006695)	VPS52 (ENSCWAG00000006627) #20	ENSCWAG00000006594 #21	B3GALT4 (ENSCWAG00000006580) #22	WDR46 (ENSCWAG00000006519) #23	ENSCWAG00000006503	PFDN6 (ENSCWAG00000006480) #24	ENSCWAG00000006431 #25	TAPBP (ENSCWAG00000006363) #26	ZBTB22 (ENSCWAG00000006346) #27	DAXX (ENSCWAG00000006331) #28	SMIM40 (ENSCWAG00000006317) #29	KIFC1 (ENSCWAG00000006260)	PHF1 (ENSCWAG00000006199) #31	CUTA (ENSCWAG00000006165) #32	SYNGAP1 (ENSCWAG00000006055) #33	ZBTB9 (ENSCWAG00000006043) #34	BAK1 (ENSCWAG00000006011) #35	ENSCWAG00000005968 #36
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022.g #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022.g #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000153786.e.a.b	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022.g #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000153786.e.a.b	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000154732.q.b.a	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022.g #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000154732.q.b.a	ENSGT00940000162112 #12	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022.g #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000153786.e.a.b.f	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36
Narwhal	MODERN SPECIES	310	TAP1 (ENSMMNG00015013311) #7	PSMB9 (ENSMMNG00015013288) #8	HLA-DMB (ENSMMNG00015013276) #9	HLA-DMA (ENSMMNG00015013256) #10	BRD2 (ENSMMNG00015013179) #11	ENSMMNG00015013152	HLA-DOA (ENSMMNG00015013123) #12	ENSMMNG00015013117 #13	COL11A2 (ENSMMNG00015012846) #15	RXRB (ENSMMNG00015012697) #16	SLC39A7 (ENSMMNG00015012682) #17	HSD17B8 (ENSMMNG00015012658) #18	ENSMMNG00015012638 #19	VPS52 (ENSMMNG00015012607) #20	ENSMMNG00015012591 #21	B3GALT4 (ENSMMNG00015012584) #22	WDR46 (ENSMMNG00015012564) #23	PFDN6 (ENSMMNG00015012541) #24	RGL2 (ENSMMNG00015012522) #25	TAPBP (ENSMMNG00015012480) #26	ZBTB22 (ENSMMNG00015012464) #27	DAXX (ENSMMNG00015012453) #28	KIFC1 (ENSMMNG00015012412)	PHF1 (ENSMMNG00015012349) #31	CUTA (ENSMMNG00015012280) #32	SYNGAP1 (ENSMMNG00015012086) #33	ENSMMNG00015012030	ZBTB9 (ENSMMNG00015012021) #34	BAK1 (ENSMMNG00015012006) #35	ENSMMNG00015011979 #36	ENSMMNG00015011970
Beluga whale	MODERN SPECIES	8	PSMB8 (ENSDLEG00000021995)	TAP1 (ENSDLEG00000021996) #7	PSMB9 (ENSDLEG00000008143) #8	HLA-DMB (ENSDLEG00000008166) #9	HLA-DMA (ENSDLEG00000008210) #10	BRD2 (ENSDLEG00000008248) #11	ENSDLEG00000008322	HLA-DOA (ENSDLEG00000008482) #12	COL11A2 (ENSDLEG00000008562) #15	RXRB (ENSDLEG00000008760) #16	SLC39A7 (ENSDLEG00000008789) #17	HSD17B8 (ENSDLEG00000008819) #18	RING1 (ENSDLEG00000008919) #19	VPS52 (ENSDLEG00000008948) #20	RPS18 (ENSDLEG00000009077) #21	B3GALT4 (ENSDLEG00000009097) #22	WDR46 (ENSDLEG00000009126) #23	PFDN6 (ENSDLEG00000009394) #24	RGL2 (ENSDLEG00000009432) #25	ENSDLEG00000009529	TAPBP (ENSDLEG00000009539) #26	ZBTB22 (ENSDLEG00000009549) #27	DAXX (ENSDLEG00000009561) #28	SMIM40 (ENSDLEG00000009639) #29	KIFC1 (ENSDLEG00000009649)	PHF1 (ENSDLEG00000009666) #31	CUTA (ENSDLEG00000009700) #32	SYNGAP1 (ENSDLEG00000009904) #33	ENSDLEG00000012321	ZBTB9 (ENSDLEG00000012333) #34	BAK1 (ENSDLEG00000012340) #35
Vaquita	MODERN SPECIES	2	PSMB8 (ENSPSNG00000018160)	TAP1 (ENSPSNG00000018201) #7	PSMB9 (ENSPSNG00000018232) #8	HLA-DMB (ENSPSNG00000018284) #9	HLA-DMA (ENSPSNG00000018364) #10	BRD2 (ENSPSNG00000018549) #11	ENSPSNG00000018620	HLA-DOA (ENSPSNG00000018672) #12	ENSPSNG00000018732 #13	COL11A2 (ENSPSNG00000019010) #15	RXRB (ENSPSNG00000020305) #16	SLC39A7 (ENSPSNG00000020344) #17	HSD17B8 (ENSPSNG00000020389) #18	RING1 (ENSPSNG00000020433) #19	VPS52 (ENSPSNG00000020483) #20	B3GALT4 (ENSPSNG00000020525) #22	WDR46 (ENSPSNG00000020574) #23	PFDN6 (ENSPSNG00000020614) #24	RGL2 (ENSPSNG00000011206) #25	TAPBP (ENSPSNG00000011408) #26	ZBTB22 (ENSPSNG00000011484) #27	DAXX (ENSPSNG00000011511) #28	SMIM40 (ENSPSNG00000011575) #29	KIFC1 (ENSPSNG00000011613)	CUTA (ENSPSNG00000011726) #32	SYNGAP1 (ENSPSNG00000012003) #33	ZBTB9 (ENSPSNG00000013410) #34	BAK1 (ENSPSNG00000013464) #35	ENSPSNG00000013586 #36	ITPR3 (ENSPSNG00000013739) #37	ENSPSNG00000014465
Sperm whale	MODERN SPECIES	255														VPS52 (ENSPCTG00005015756) #20	RPS18 (ENSPCTG00005016112) #21	B3GALT4 (ENSPCTG00005016212) #22	WDR46 (ENSPCTG00005016229) #23	PFDN6 (ENSPCTG00005016295) #24	RGL2 (ENSPCTG00005016381) #25	TAPBP (ENSPCTG00005016612) #26	ZBTB22 (ENSPCTG00005016698) #27	DAXX (ENSPCTG00005016713) #28	SMIM40 (ENSPCTG00005016743) #29
Blue whale	MODERN SPECIES	2	PSMB8 (ENSBMSG00010011493)	TAP1 (ENSBMSG00010011477) #7	PSMB9 (ENSBMSG00010011462) #8	HLA-DMB (ENSBMSG00010011446) #9	HLA-DMA (ENSBMSG00010011432) #10	BRD2 (ENSBMSG00010011399) #11	HLA-DOA (ENSBMSG00010011380) #12	ENSBMSG00010011366 #13	COL11A2 (ENSBMSG00010010982) #15	RXRB (ENSBMSG00010010818) #16	SLC39A7 (ENSBMSG00010010802) #17	HSD17B8 (ENSBMSG00010010786) #18	ENSBMSG00010010769 #19	VPS52 (ENSBMSG00010010756) #20	RPS18 (ENSBMSG00010010743) #21	B3GALT4 (ENSBMSG00010010736) #22	WDR46 (ENSBMSG00010010725) #23	ENSBMSG00010010714 #24	RGL2 (ENSBMSG00010010689) #25	TAPBP (ENSBMSG00010010652) #26	ZBTB22 (ENSBMSG00010010638) #27	DAXX (ENSBMSG00010010625) #28	SMIM40 (ENSBMSG00010010619) #29	KIFC1 (ENSBMSG00010010611)	PHF1 (ENSBMSG00010010595) #31	CUTA (ENSBMSG00010010557) #32	SYNGAP1 (ENSBMSG00010010019) #33	ZBTB9 (ENSBMSG00010009949) #34	BAK1 (ENSBMSG00010009926) #35	ENSBMSG00010009909 #36	ITPR3 (ENSBMSG00010009844) #37
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000160499	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Rambouillet Sheep	MODERN SPECIES	12	TAP2 (ENSOARG00020025129)	PSMB8 (ENSOARG00020025156)	TAP1 (ENSOARG00020025187) #7	ENSOARG00020025249 #8	HLA-DMB (ENSOARG00020025272) #9	HLA-DMA (ENSOARG00020025286) #10	BRD2 (ENSOARG00020011534) #11	HLA-DOA (ENSOARG00020011582) #12	COL11A2 (ENSOARG00020011636) #15	RXRB (ENSOARG00020011980) #16	SLC39A7 (ENSOARG00020012152) #17	HSD17B8 (ENSOARG00020012212) #18	RING1 (ENSOARG00020012299) #19	VPS52 (ENSOARG00020012385) #20	RPS18 (ENSOARG00020012536) #21	B3GALT4 (ENSOARG00020012594) #22	WDR46 (ENSOARG00020012626) #23	PFDN6 (ENSOARG00020012726) #24	RGL2 (ENSOARG00020012842) #25	TAPBP (ENSOARG00020013171) #26	ZBTB22 (ENSOARG00020013358) #27	DAXX (ENSOARG00020013385) #28	SMIM40 (ENSOARG00020013486) #29	KIFC1 (ENSOARG00020013542)	PHF1 (ENSOARG00020013705) #31	CUTA (ENSOARG00020013904) #32	SYNGAP1 (ENSOARG00020014272) #33	ZBTB9 (ENSOARG00020017726) #34	BAK1 (ENSOARG00020017744) #35	ENSOARG00020017836 #36	ITPR3 (ENSOARG00020017959) #37
Goat	MODERN SPECIES	15	TAP2 (ENSCHIG00000017732)	PSMB8 (ENSCHIG00000012829)	TAP1 (ENSCHIG00000021983) #7	PSMB9 (ENSCHIG00000021513) #8	HLA-DMB (ENSCHIG00000026519) #9	HLA-DMA (ENSCHIG00000009464) #10	BRD2 (ENSCHIG00000013946) #11	HLA-DOA (ENSCHIG00000014302) #12	COL11A2 (ENSCHIG00000012269) #15	RXRB (ENSCHIG00000010266) #16	SLC39A7 (ENSCHIG00000024209) #17	HSD17B8 (ENSCHIG00000017839) #18	RING1 (ENSCHIG00000015685) #19	VPS52 (ENSCHIG00000023524) #20	RPS18 (ENSCHIG00000025263) ##21	B3GALT4 (ENSCHIG00000013295) #22	WDR46 (ENSCHIG00000017786) #23	ENSCHIG00000021078 #24	RGL2 (ENSCHIG00000009307) #25	TAPBP (ENSCHIG00000010108) #26	ZBTB22 (ENSCHIG00000003375) #27	ENSCHIG00000013938 #28	ENSCHIG00000026105	KIFC1 (ENSCHIG00000019665)	CUTA (ENSCHIG00000012220) #32	PHF1 (ENSCHIG00000023053) #31	SYNGAP1 (ENSCHIG00000014463) #33	ZBTB9 (ENSCHIG00000003330) #34	BAK1 (ENSCHIG00000016258) #35	ENSCHIG00000007482 #36	ITPR3 (ENSCHIG00000007818) #37
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Bos	ANCESTRAL SPECIES	17	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.d ##21	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Wild yak	MODERN SPECIES	401	PSMB8 (ENSBMUG00000007942)	TAP1 (ENSBMUG00000007967) #7	PSMB9 (ENSBMUG00000007982) #8	ENSBMUG00000007993	HLA-DMB (ENSBMUG00000008003) #9	HLA-DMA (ENSBMUG00000008047) #10	BRD2 (ENSBMUG00000008066) #11	HLA-DOA (ENSBMUG00000008090) #12	COL11A2 (ENSBMUG00000008342) #15	RXRB (ENSBMUG00000008461) #16	SLC39A7 (ENSBMUG00000008706) #17	HSD17B8 (ENSBMUG00000008752) #18	RING1 (ENSBMUG00000008786) #19	VPS52 (ENSBMUG00000008802) #20	ENSBMUG00000008818 #21	B3GALT4 (ENSBMUG00000008835) #22	WDR46 (ENSBMUG00000008867) #23	PFDN6 (ENSBMUG00000008885) #24	RGL2 (ENSBMUG00000008900) #25	TAPBP (ENSBMUG00000008952) #26	ZBTB22 (ENSBMUG00000008980) #27	DAXX (ENSBMUG00000008993) #28	SMIM40 (ENSBMUG00000009010) #29	KIFC1 (ENSBMUG00000009021)	PHF1 (ENSBMUG00000009079) #31	CUTA (ENSBMUG00000009105) #32	SYNGAP1 (ENSBMUG00000009132) #33	ZBTB9 (ENSBMUG00000009163) #34	BAK1 (ENSBMUG00000009180) #35	ENSBMUG00000009194 #36	ITPR3 (ENSBMUG00000015536) #37
Domestic yak	MODERN SPECIES	16	HLA-DOB (ENSBGRG00000022347)	TAP2 (ENSBGRG00000022189)	PSMB8 (ENSBGRG00000022108)	TAP1 (ENSBGRG00000022060) #7	ENSBGRG00000021991 #8	HLA-DMB (ENSBGRG00000021922) #9	HLA-DMA (ENSBGRG00000021851) #10	BRD2 (ENSBGRG00000021629) #11	HLA-DOA (ENSBGRG00000021588) #12	COL11A2 (ENSBGRG00000019137) #15	RXRB (ENSBGRG00000019018) #16	SLC39A7 (ENSBGRG00000018980) #17	HSD17B8 (ENSBGRG00000018839) #18	RING1 (ENSBGRG00000018754) #19	VPS52 (ENSBGRG00000018459) #20	B3GALT4 (ENSBGRG00000018285) #22	WDR46 (ENSBGRG00000017950) #23	PFDN6 (ENSBGRG00000017800) #24	RGL2 (ENSBGRG00000017715) #25	TAPBP (ENSBGRG00000017312) #26	ZBTB22 (ENSBGRG00000017270) #27	DAXX (ENSBGRG00000017181) #28	SMIM40 (ENSBGRG00000017145) #29	KIFC1 (ENSBGRG00000016981)	PHF1 (ENSBGRG00000016743) #31	CUTA (ENSBGRG00000016639) #32	SYNGAP1 (ENSBGRG00000015797) #33	BAK1 (ENSBGRG00000022225) #35	ENSBGRG00000022171 #36	ITPR3 (ENSBGRG00000021666) #37	UQCC2 (ENSBGRG00000021583)
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000157293	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.d ##21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512.o.a #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Cow	MODERN SPECIES	15	PSMB8 (ENSBTAG00000003039)	TAP1 (ENSBTAG00000008953) #7	PSMB9 (ENSBTAG00000008954) #8	H2B (ENSBTAG00000051545)	BOLA-DMB (ENSBTAG00000012451) #9	BOLA-DMA (ENSBTAG00000015730) #10	BRD2 (ENSBTAG00000011074) #11	BOLA-DOA (ENSBTAG00000006490) #12	COL11A2 (ENSBTAG00000000601) #15	RXRB (ENSBTAG00000000602) #16	SLC39A7 (ENSBTAG00000008191) #17	HSD17B8 (ENSBTAG00000020927) #18	RING1 (ENSBTAG00000018884) #19	VPS52 (ENSBTAG00000002643) #20	RPS18 (ENSBTAG00000002648) ##21	B3GALT4 (ENSBTAG00000025669) #22	WDR46 (ENSBTAG00000016824) #23	PFDN6 (ENSBTAG00000010723) #24	RGL2 (ENSBTAG00000016827) #25	TAPBP (ENSBTAG00000016828) #26	ZBTB22 (ENSBTAG00000016829) #27	DAXX (ENSBTAG00000016830) #28	KIFC1 (ENSBTAG00000001631)	PHF1 (ENSBTAG00000001634) #31	CUTA (ENSBTAG00000001635) #32	SYNGAP1 (ENSBTAG00000020975) #33	ZBTB9 (ENSBTAG00000038888) #34	BAK1 (ENSBTAG00000000428) #35	GGNBP1 (ENSBTAG00000011057) #36	ITPR3 (ENSBTAG00000013245) #37	UQCC2 (ENSBTAG00000054726)
Hybrid Bos Indicus	MODERN SPECIES	15	PSMB8 (ENSBIXG00005014824)	TAP1 (ENSBIXG00005014801) #7	PSMB9 (ENSBIXG00005014787) #8	ENSBIXG00005014770	HLA-DMB (ENSBIXG00005014762) #9	HLA-DMA (ENSBIXG00005014743) #10	BRD2 (ENSBIXG00005014704) #11	HLA-DOA (ENSBIXG00005014640) #12	COL11A2 (ENSBIXG00005014598) #15	RXRB (ENSBIXG00005014520) #16	SLC39A7 (ENSBIXG00005014473) #17	HSD17B8 (ENSBIXG00005001937) #18	RING1 (ENSBIXG00005006128) #19	VPS52 (ENSBIXG00005014413) #20	RPS18 (ENSBIXG00005006736) ##21	B3GALT4 (ENSBIXG00005014338) #22	WDR46 (ENSBIXG00005014304) #23	PFDN6 (ENSBIXG00005014270) #24	RGL2 (ENSBIXG00005014224) #25	TAPBP (ENSBIXG00005006125) #26	ZBTB22 (ENSBIXG00005014096) #27	DAXX (ENSBIXG00005001833) #28	SMIM40 (ENSBIXG00005014070) #29	KIFC1 (ENSBIXG00005001822)	PHF1 (ENSBIXG00005007493) #31	CUTA (ENSBIXG00005001757) #32	SYNGAP1 (ENSBIXG00005013877) #33	ZBTB9 (ENSBIXG00005013532) #34	BAK1 (ENSBIXG00005001624) #35	ENSBIXG00005013470 #36	ITPR3 (ENSBIXG00005013427) #37
American bison	MODERN SPECIES	3186	PSMB8 (ENSBBBG00000015244)	TAP1 (ENSBBBG00000015234) #7	PSMB9 (ENSBBBG00000003777) #8	ENSBBBG00000015200	HLA-DMB (ENSBBBG00000008914) #9	HLA-DMA (ENSBBBG00000015169) #10	BRD2 (ENSBBBG00000002785) #11	HLA-DOA (ENSBBBG00000015112) #12	ENSBBBG00000003746 #15	RXRB (ENSBBBG00000015089) #16	SLC39A7 (ENSBBBG00000014969) #17	HSD17B8 (ENSBBBG00000003696) #18	RING1 (ENSBBBG00000003692) #19	VPS52 (ENSBBBG00000003598) #20	RPS18 (ENSBBBG00000003625) #21	B3GALT4 (ENSBBBG00000003638) #22	WDR46 (ENSBBBG00000014933) #23	PFDN6 (ENSBBBG00000014925) #24	RGL2 (ENSBBBG00000000845) #25	TAPBP (ENSBBBG00000000871) #26	ZBTB22 (ENSBBBG00000000917) #27	DAXX (ENSBBBG00000000938) #28	SMIM40 (ENSBBBG00000000988) #29	ENSBBBG00000000992	KIFC1 (ENSBBBG00000001000)	PHF1 (ENSBBBG00000001027) #31	CUTA (ENSBBBG00000001096) #32	SYNGAP1 (ENSBBBG00000001211) #33	ZBTB9 (ENSBBBG00000014478) #34	BAK1 (ENSBBBG00000014474) #35	ENSBBBG00000014460 #36
Siberian musk deer	MODERN SPECIES	355	HLA-DOB (ENSMMSG00000022133)	TAP1 (ENSMMSG00000022156) #7	PSMB8 (ENSMMSG00000022217)	PSMB9 (ENSMMSG00000022236) #8	HLA-DMB (ENSMMSG00000022257) #9	HLA-DMA (ENSMMSG00000022283) #10	BRD2 (ENSMMSG00000022334) #11	HLA-DOA (ENSMMSG00000022389) #12	COL11A2 (ENSMMSG00000022475) #15	RXRB (ENSMMSG00000023046) #16	SLC39A7 (ENSMMSG00000023058) #17	HSD17B8 (ENSMMSG00000023067) #18	RING1 (ENSMMSG00000023081) #19	VPS52 (ENSMMSG00000023094) #20	RPS18 (ENSMMSG00000023117) #21	B3GALT4 (ENSMMSG00000023125) #22	WDR46 (ENSMMSG00000023133) #23	ENSMMSG00000023143 #24	RGL2 (ENSMMSG00000023157) #25	TAPBP (ENSMMSG00000023185) #26	ZBTB22 (ENSMMSG00000023203) #27	DAXX (ENSMMSG00000023208) #28	SMIM40 (ENSMMSG00000023214) #29	KIFC1 (ENSMMSG00000023227)	PHF1 (ENSMMSG00000023287) #31	CUTA (ENSMMSG00000023317) #32	SYNGAP1 (ENSMMSG00000023343) #33	ZBTB9 (ENSMMSG00000023399) #34	BAK1 (ENSMMSG00000023407) #35	ENSMMSG00000023420 #36	ITPR3 (ENSMMSG00000023429) #37
Yarkand deer	MODERN SPECIES	30	ENSCHYG00000004358	ENSCHYG00000004368	HLA-DOB (ENSCHYG00000004391)	TAP2 (ENSCHYG00000004426)	PSMB8 (ENSCHYG00000004467)	TAP1 (ENSCHYG00000004483) #7	ENSCHYG00000004500 #8	HLA-DMB (ENSCHYG00000004514) #9	HLA-DMA (ENSCHYG00000004520) #10	BRD2 (ENSCHYG00000004539) #11	HLA-DOA (ENSCHYG00000004561) #12	COL11A2 (ENSCHYG00000004624) #15	RING1 (ENSCHYG00000004682) #19	VPS52 (ENSCHYG00000004695) #20	RPS18 (ENSCHYG00000004733) #21	B3GALT4 (ENSCHYG00000004743) #22	WDR46 (ENSCHYG00000004759) #23	PFDN6 (ENSCHYG00000004871) #24	RGL2 (ENSCHYG00000004896) #25	TAPBP (ENSCHYG00000004933) #26	ZBTB22 (ENSCHYG00000004990) #27	DAXX (ENSCHYG00000005013) #28	SMIM40 (ENSCHYG00000005026) #29	KIFC1 (ENSCHYG00000005051)	PHF1 (ENSCHYG00000005145) #31	CUTA (ENSCHYG00000005349) #32	SYNGAP1 (ENSCHYG00000005513) #33	ZBTB9 (ENSCHYG00000005656) #34	BAK1 (ENSCHYG00000005696) #35	ENSCHYG00000005749 #36	ITPR3 (ENSCHYG00000005797) #37
Camelidae	ANCESTRAL SPECIES	13	ENSGT00940000159023 #7	ENSGT00940000159897 #8	ENSGT00940000160381 #9	ENSGT00940000161157 #10	ENSGT00940000153385.b.a.b #11	ENSGT00940000162112 #12	ENSGT00940000162498	ENSGT00940000162390 #13	ENSGT00940000159762 #15	ENSGT00940000159208.B #16	ENSGT00940000160076 #17	ENSGT00940000160668 #18	ENSGT00940000161022 #19	ENSGT00390000008815 #20	ENSGT00390000012691.c.b #21	ENSGT00940000161798 #22	ENSGT00390000007075 #23	ENSGT00390000010512 #24	ENSGT00940000161403 #25	ENSGT00940000159200 #26	ENSGT00940000160991 #27	ENSGT00390000009448 #28	ENSGT00920000150736 #29	ENSGT00940000161735	ENSGT00950000183180.a.b #31	ENSGT00390000017030.b.b #32	ENSGT00940000158438 #33	ENSGT00940000162408 #34	ENSGT01090000260100.A #35	ENSGT00390000006663 #36	ENSGT00940000157078 #37
Arabian camel	MODERN SPECIES	12	TAP1 (ENSCDRG00005021477) #7	PSMB9 (ENSCDRG00005021480) #8	HLA-DMB (ENSCDRG00005021484) #9	HLA-DMA (ENSCDRG00005021489) #10	BRD2 (ENSCDRG00005021496) #11	HLA-DOA (ENSCDRG00005021502) #12	HLA-DPA1 (ENSCDRG00005021505)	HLA-DPB1 (ENSCDRG00005021506) #13	COL11A2 (ENSCDRG00005021542) #15	RXRB (ENSCDRG00005021632) #16	SLC39A7 (ENSCDRG00005021641) #17	HSD17B8 (ENSCDRG00005021643) #18	RING1 (ENSCDRG00005021646) #19	VPS52 (ENSCDRG00005021653) #20	RPS18 (ENSCDRG00005021659) #21	B3GALT4 (ENSCDRG00005021661) #22	WDR46 (ENSCDRG00005021663) #23	PFDN6 (ENSCDRG00005021673) #24	RGL2 (ENSCDRG00005021678) #25	TAPBP (ENSCDRG00005021686) #26	ZBTB22 (ENSCDRG00005021690) #27	DAXX (ENSCDRG00005021691) #28	SMIM40 (ENSCDRG00005021695) #29	KIFC1 (ENSCDRG00005021698)	PHF1 (ENSCDRG00005021700) #31	CUTA (ENSCDRG00005021706) #32	SYNGAP1 (ENSCDRG00005021714) #33	ZBTB9 (ENSCDRG00005021729) #34	BAK1 (ENSCDRG00005021730) #35	ENSCDRG00005021734 #36	ITPR3 (ENSCDRG00005021737) #37