Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Long-tailed chinchilla	MODERN SPECIES	119	TMPRSS13 (ENSCLAG00000015251) #7	IL10RA (ENSCLAG00000011658) #8	SMIM35 (ENSCLAG00000011882) #9	TMPRSS4 (ENSCLAG00000012156) #10	ENSCLAG00000017818 #11	SCN4B (ENSCLAG00000013104) #12	SCN2B (ENSCLAG00000012371) #13	ENSCLAG00000015391 #14	MPZL3 (ENSCLAG00000012975) #15	MPZL2 (ENSCLAG00000013369) #16	CD3E (ENSCLAG00000012378) #17	CD3D (ENSCLAG00000013677) #18	CD3G (ENSCLAG00000013148) #19	UBE4A (ENSCLAG00000015122) #20	ENSCLAG00000013433 #21	KMT2A (ENSCLAG00000016132) #22	TTC36 (ENSCLAG00000014598) #23	TMEM25 (ENSCLAG00000012417) #24	IFT46 (ENSCLAG00000012829) #25	ARCN1 (ENSCLAG00000013503) #26	PHLDB1 (ENSCLAG00000016433) #27	TREH (ENSCLAG00000017238) #28	DDX6 (ENSCLAG00000016749) #29	CXCR5 (ENSCLAG00000014587) #30	BCL9L (ENSCLAG00000016475) #31	UPK2 (ENSCLAG00000014907) #32	FOXR1 (ENSCLAG00000017051) #33	CENATAC (ENSCLAG00000014684) #34	RPS25 (ENSCLAG00000011816) #35	TRAPPC4 (ENSCLAG00000015643) #36	SLC37A4 (ENSCLAG00000015915) #37
Degu	MODERN SPECIES	121	ENSODEG00000008922	SMIM35 (ENSODEG00000008714) #9	TMPRSS4 (ENSODEG00000007951) #10	SCN4B (ENSODEG00000013244) #12	SCN2B (ENSODEG00000008892) #13	ENSODEG00000008362 #14	ENSODEG00000013916	MPZL3 (ENSODEG00000010522) #15	MPZL2 (ENSODEG00000008668) #16	CD3E (ENSODEG00000011105) #17	CD3D (ENSODEG00000008502) #18	CD3G (ENSODEG00000008512) #19	ENSODEG00000009407	UBE4A (ENSODEG00000007578) #20	ENSODEG00000008388 #21	KMT2A (ENSODEG00000010867) #22	TTC36 (ENSODEG00000007448) #23	TMEM25 (ENSODEG00000009164) #24	IFT46 (ENSODEG00000009156) #25	ARCN1 (ENSODEG00000008811) #26	ENSODEG00000008503 #27	ENSODEG00000009600 #27	TREH (ENSODEG00000008508) #28	DDX6 (ENSODEG00000007950) #29	ENSODEG00000019480	ENSODEG00000019496	ENSODEG00000019541	ENSODEG00000019466	ENSODEG00000019472	CXCR5 (ENSODEG00000009623) #30	BCL9L (ENSODEG00000008521) #31
Guinea pig	MODERN SPECIES	19	FXYD6 (ENSCPOG00000035059)	TMPRSS13 (ENSCPOG00000011938) #7	IL10RA (ENSCPOG00000030865) #8	SMIM35 (ENSCPOG00000037236) #9	TMPRSS4 (ENSCPOG00000005899) #10	SCN4B (ENSCPOG00000003831) #12	SCN2B (ENSCPOG00000034956) #13	ENSCPOG00000010118 #14	MPZL3 (ENSCPOG00000039523) #15	ENSCPOG00000036539 #16	CD3E (ENSCPOG00000001430) #17	CD3D (ENSCPOG00000013163) #18	CD3G (ENSCPOG00000022675) #19	UBE4A (ENSCPOG00000013164) #20	ENSCPOG00000038525 #21	KMT2A (ENSCPOG00000005813) #22	TTC36 (ENSCPOG00000023702) #23	TMEM25 (ENSCPOG00000031708) #24	IFT46 (ENSCPOG00000006279) #25	ARCN1 (ENSCPOG00000023815) #26	PHLDB1 (ENSCPOG00000006424) #27	TREH (ENSCPOG00000005437) #28	DDX6 (ENSCPOG00000010587) #29	CXCR5 (ENSCPOG00000039191) #30	BCL9L (ENSCPOG00000009787) #31	UPK2 (ENSCPOG00000002222) #32	ENSCPOG00000001855 #33	CENATAC (ENSCPOG00000013290) #34	ENSCPOG00000013298 ##35	TRAPPC4 (ENSCPOG00000013301) #36	SLC37A4 (ENSCPOG00000035396) #37
Naked mole-rat female	MODERN SPECIES	24	TMPRSS13 (ENSHGLG00000019043) #7	IL10RA (ENSHGLG00000038872) #8	SMIM35 (ENSHGLG00000017558) #9	TMPRSS4 (ENSHGLG00000017567) #10	SCN4B (ENSHGLG00000050753) #12	SCN2B (ENSHGLG00000033638) #13	ENSHGLG00000017992 #14	ENSHGLG00000049594	MPZL3 (ENSHGLG00000018484) #15	ENSHGLG00000018497 #16	CD3E (ENSHGLG00000018122) #17	CD3G (ENSHGLG00000017797) #19	UBE4A (ENSHGLG00000017823) #20	CD3D (ENSHGLG00000017785) #18	ENSHGLG00000013545 #21	KMT2A (ENSHGLG00000013811) #22	ENSHGLG00000032294	TTC36 (ENSHGLG00000042848) #23	TMEM25 (ENSHGLG00000017842) #24	IFT46 (ENSHGLG00000017283) #25	ARCN1 (ENSHGLG00000039336) #26	PHLDB1 (ENSHGLG00000004051) #27	ENSHGLG00000049202	TREH (ENSHGLG00000004167) #28	ENSHGLG00000036948	ENSHGLG00000004248	DDX6 (ENSHGLG00000004316) #29	ENSHGLG00000048072	CXCR5 (ENSHGLG00000034839) #30	BCL9L (ENSHGLG00000004416) #31	ENSHGLG00000038118
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207.d #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Marmotini	ANCESTRAL SPECIES	20	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207.d #26	ENSGT00940000155231.b.w #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Marmotini_b	ANCESTRAL SPECIES	43	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207.d #26	ENSGT00940000155231.b.w #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Arctic ground squirrel	MODERN SPECIES	170	ENSUPAG00010006193	TMPRSS13 (ENSUPAG00010006212) #7	IL10RA (ENSUPAG00010006230) #8	SMIM35 (ENSUPAG00010006235) #9	TMPRSS4 (ENSUPAG00010006241) #10	ENSUPAG00010006265 #12	SCN2B (ENSUPAG00010006281) #13	ENSUPAG00010006294 #14	MPZL3 (ENSUPAG00010006306) #15	MPZL2 (ENSUPAG00010006315) #16	CD3E (ENSUPAG00010006321) #17	CD3D (ENSUPAG00010006334) #18	CD3G (ENSUPAG00010006342) #19	UBE4A (ENSUPAG00010006348) #20	ENSUPAG00010006390 #21	KMT2A (ENSUPAG00010006395) #22	TTC36 (ENSUPAG00010006459) #23	TMEM25 (ENSUPAG00010006469) #24	IFT46 (ENSUPAG00010006481) #25	ARCN1 (ENSUPAG00010006510) #26	PHLDB1 (ENSUPAG00010006520) #27	TREH (ENSUPAG00010006722) #28	DDX6 (ENSUPAG00010006792) #29	CXCR5 (ENSUPAG00010006813) #30	BCL9L (ENSUPAG00010006821) #31	UPK2 (ENSUPAG00010006857) #32	ENSUPAG00010006869	FOXR1 (ENSUPAG00010006881) #33	CENATAC (ENSUPAG00010006898) #34	RPS25 (ENSUPAG00010006950) #35	TRAPPC4 (ENSUPAG00010006976) #36
Squirrel	MODERN SPECIES	142	RNF214 (ENSSTOG00000026444)	BACE1 (ENSSTOG00000020402)	CEP164 (ENSSTOG00000011380)	DSCAML1 (ENSSTOG00000011396)	FXYD2 (ENSSTOG00000028766)	FXYD6 (ENSSTOG00000023242)	TMPRSS13 (ENSSTOG00000007794) #7	IL10RA (ENSSTOG00000007838) #8	SMIM35 (ENSSTOG00000024897) #9	TMPRSS4 (ENSSTOG00000003485) #10	SCN4B (ENSSTOG00000028585) #12	SCN2B (ENSSTOG00000021064) #13	ENSSTOG00000015407 #14	MPZL3 (ENSSTOG00000015410) #15	MPZL2 (ENSSTOG00000014520) #16	KMT2A (ENSSTOG00000014405) #22	CD3D (ENSSTOG00000024175) #18	ENSSTOG00000014400 #21	TTC36 (ENSSTOG00000026783) #23	TMEM25 (ENSSTOG00000014432) #24	IFT46 (ENSSTOG00000014435) #25	ARCN1 (ENSSTOG00000014445) #26	ENSSTOG00000025149 #27	ENSSTOG00000014454 #27	TREH (ENSSTOG00000014466) #28	DDX6 (ENSSTOG00000014475) #29	CXCR5 (ENSSTOG00000025389) #30	BCL9L (ENSSTOG00000021546) #31	UPK2 (ENSSTOG00000014318) #32	FOXR1 (ENSSTOG00000014321) #33	CENATAC (ENSSTOG00000014325) #34
Alpin marmot	MODERN SPECIES	25	FXYD2 (ENSMMMG00000022796)	FXYD6 (ENSMMMG00000022790)	TMPRSS13 (ENSMMMG00000022786) #7	IL10RA (ENSMMMG00000022779) #8	SMIM35 (ENSMMMG00000022777) #9	TMPRSS4 (ENSMMMG00000022771) #10	SCN4B (ENSMMMG00000022769) #12	SCN2B (ENSMMMG00000022768) #13	ENSMMMG00000022766 #14	MPZL3 (ENSMMMG00000022765) #15	MPZL2 (ENSMMMG00000022759) #16	CD3E (ENSMMMG00000022757) #17	CD3D (ENSMMMG00000022754) #18	UBE4A (ENSMMMG00000022744) #20	ENSMMMG00000022738 #21	KMT2A (ENSMMMG00000022724) #22	TTC36 (ENSMMMG00000022722) #23	TMEM25 (ENSMMMG00000022718) #24	IFT46 (ENSMMMG00000022714) #25	ARCN1 (ENSMMMG00000022711) #26	PHLDB1 (ENSMMMG00000022601) #27	TREH (ENSMMMG00000022593) #28	DDX6 (ENSMMMG00000022580) #29	CXCR5 (ENSMMMG00000022572) #30	BCL9L (ENSMMMG00000022559) #31	ENSMMMG00000022558	UPK2 (ENSMMMG00000022555) #32	FOXR1 (ENSMMMG00000022553) #33	CENATAC (ENSMMMG00000022547) #34	ENSMMMG00000022541 ##35	ENSMMMG00000022537 #36
Eurasian red squirrel	MODERN SPECIES	2	TMPRSS13 (ENSSVLG00005023759) #7	IL10RA (ENSSVLG00005023826) #8	SMIM35 (ENSSVLG00005023865) #9	TMPRSS4 (ENSSVLG00005023934) #10	SCN4B (ENSSVLG00005024198) #12	SCN2B (ENSSVLG00005024230) #13	JAML (ENSSVLG00005024261) ##16	MPZL3 (ENSSVLG00005024358) #15	MPZL2 (ENSSVLG00005024417) #16	ENSSVLG00005024441	ENSSVLG00005024461 #17	CD3D (ENSSVLG00005024525) #18	CD3G (ENSSVLG00005024593) #19	UBE4A (ENSSVLG00005024644) #20	ENSSVLG00005024683 #21	KMT2A (ENSSVLG00005024766) #22	TTC36 (ENSSVLG00005024881) #23	TMEM25 (ENSSVLG00005012879) #24	IFT46 (ENSSVLG00005012985) #25	ARCN1 (ENSSVLG00005013104) #26	PHLDB1 (ENSSVLG00005013481) #27	TREH (ENSSVLG00005013828) #28	DDX6 (ENSSVLG00005014076) #29	CXCR5 (ENSSVLG00005014130) #30	BCL9L (ENSSVLG00005014178) #31	UPK2 (ENSSVLG00005014262) #32	FOXR1 (ENSSVLG00005014333) #33	ENSSVLG00005014434 #35	ENSSVLG00005014518 #36	SLC37A4 (ENSSVLG00005014603) #37	HYOU1 (ENSSVLG00005014785)
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Muroidea	ANCESTRAL SPECIES	29	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Chinese hamster chok1gshd	MODERN SPECIES	284	Il10ra (ENSCGRG00001007663) #8	Smim35 (ENSCGRG00001005398) #9	Tmprss4 (ENSCGRG00001023270) #10	Scn4b (ENSCGRG00001023168) #12	Scn2b (ENSCGRG00001024766) #13	ENSCGRG00001012141	Jaml (ENSCGRG00001013774) #14	Mpzl3 (ENSCGRG00001019761) #15	Mpzl2 (ENSCGRG00001014975) #16	Cd3e (ENSCGRG00001012232) #17	Cd3d (ENSCGRG00001015398) #18	Cd3g (ENSCGRG00001019076) #19	Ube4a (ENSCGRG00001000814) #20	ENSCGRG00001013811	ENSCGRG00001014430 #21	Kmt2a (ENSCGRG00001019200) #22	Ttc36 (ENSCGRG00001023946) #23	Tmem25 (ENSCGRG00001018640) #24	Ift46 (ENSCGRG00001024448) #25	Arcn1 (ENSCGRG00001012306) #26	Phldb1 (ENSCGRG00001023739) #27	Treh (ENSCGRG00001023761) #28	Ddx6 (ENSCGRG00001023465) #29	Cxcr5 (ENSCGRG00001024674) #30	Bcl9l (ENSCGRG00001024818) #31	Upk2 (ENSCGRG00001014244) #32	Ccdc84 (ENSCGRG00001014231) #34	Rps25 (ENSCGRG00001019533) ##35	Trappc4 (ENSCGRG00001017744) #36	Slc37a4 (ENSCGRG00001018650) #37	Hyou1 (ENSCGRG00001003994)
Golden Hamster	MODERN SPECIES	635	Fxyd6 (ENSMAUG00000015946)	Tmprss13 (ENSMAUG00000012207) #7	Il10ra (ENSMAUG00000019337) #8	Smim35 (ENSMAUG00000012776) #9	Tmprss4 (ENSMAUG00000002659) #10	Scn4b (ENSMAUG00000001092) #12	Scn2b (ENSMAUG00000005867) #13	Jaml (ENSMAUG00000020096) #14	Mpzl3 (ENSMAUG00000008200) #15	Mpzl2 (ENSMAUG00000016377) #16	Cd3e (ENSMAUG00000009806) #17	Cd3d (ENSMAUG00000008047) #18	Cd3g (ENSMAUG00000008447) #19	Ube4a (ENSMAUG00000009626) #20	ENSMAUG00000007759 #21	Kmt2a (ENSMAUG00000021169) #22	Ttc36 (ENSMAUG00000021050) #23	Tmem25 (ENSMAUG00000016363) #24	Ift46 (ENSMAUG00000019582) #25	Arcn1 (ENSMAUG00000014545) #26	Phldb1 (ENSMAUG00000020398) #27	Treh (ENSMAUG00000011452) #28	Ddx6 (ENSMAUG00000008886) #29	Cxcr5 (ENSMAUG00000009745) #30	Bcl9l (ENSMAUG00000010868) #31	Upk2 (ENSMAUG00000008297) #32	ENSMAUG00000007602 #33	Ccdc84 (ENSMAUG00000017579) #34	ENSMAUG00000015338 #35	Trappc4 (ENSMAUG00000002801) #36	Slc37a4 (ENSMAUG00000014974) #37
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000153062.B	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00940000153761.B #36	ENSGT00730000111086 #37
Prairie vole	MODERN SPECIES	13	Fxyd6 (ENSMOCG00000021955)	Tmprss13 (ENSMOCG00000011469) #7	Il10ra (ENSMOCG00000006059) #8	Smim35 (ENSMOCG00000004113) #9	Tmprss4 (ENSMOCG00000018074) #10	Scn4b (ENSMOCG00000011126) #12	Scn2b (ENSMOCG00000004941) #13	Jaml (ENSMOCG00000018068) #14	Mpzl3 (ENSMOCG00000006399) #15	Mpzl2 (ENSMOCG00000019208) #16	Cd3e (ENSMOCG00000014849) #17	Cd3d (ENSMOCG00000012672) #18	Cd3g (ENSMOCG00000009938) #19	Ube4a (ENSMOCG00000016795) #20	ENSMOCG00000021833 #21	Kmt2a (ENSMOCG00000018194) #22	Ttc36 (ENSMOCG00000013970) #23	Tmem25 (ENSMOCG00000007841) #24	Ift46 (ENSMOCG00000018681) #25	Arcn1 (ENSMOCG00000015719) #26	ENSMOCG00000002506 #27	ENSMOCG00000018806 #27	Treh (ENSMOCG00000013089) #28	Ddx6 (ENSMOCG00000002068) #29	ENSMOCG00000005250	Cxcr5 (ENSMOCG00000004685) #30	Bcl9l (ENSMOCG00000003894) #31	Upk2 (ENSMOCG00000017361) #32	Ccdc84 (ENSMOCG00000003483) #34	ENSMOCG00000004656 #35	Trappc4 (ENSMOCG00000004337) #36
Northern American deer mouse	MODERN SPECIES	20	Tmprss13 (ENSPEMG00000016764) #7	Il10ra (ENSPEMG00000026837) #8	Smim35 (ENSPEMG00000018417) #9	Tmprss4 (ENSPEMG00000020454) #10	Scn4b (ENSPEMG00000030356) #12	Scn2b (ENSPEMG00000011352) #13	Jaml (ENSPEMG00000022735) #14	Mpzl3 (ENSPEMG00000029525) #15	Mpzl2 (ENSPEMG00000028071) #16	Cd3e (ENSPEMG00000020734) #17	Cd3d (ENSPEMG00000016314) #18	Cd3g (ENSPEMG00000021447) #19	ENSPEMG00000012032	Ube4a (ENSPEMG00000024077) #20	ENSPEMG00000022226 #21	Kmt2a (ENSPEMG00000015561) #22	Ttc36 (ENSPEMG00000013427) #23	Tmem25 (ENSPEMG00000007531) #24	Ift46 (ENSPEMG00000012188) #25	Arcn1 (ENSPEMG00000010270) #26	Phldb1 (ENSPEMG00000024138) #27	ENSPEMG00000024564	Treh (ENSPEMG00000016610) #28	Ddx6 (ENSPEMG00000024913) #29	Cxcr5 (ENSPEMG00000001412) #30	Bcl9l (ENSPEMG00000024270) #31	Upk2 (ENSPEMG00000000692) #32	Foxr1 (ENSPEMG00000007335) #33	Ccdc84 (ENSPEMG00000016054) #34	Rps25 (ENSPEMG00000001128) ##35	Trappc4 (ENSPEMG00000024221) #36
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.b.a.b #35	ENSGT00390000004856.w.a.a.a ##35
Mus	ANCESTRAL SPECIES	4	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099 #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067 #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.a ##35	ENSGT00940000153761.B #36
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099.g #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067.a #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.a ##35	ENSGT00940000153761.B #36
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099.g #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067.a #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.a ##35	ENSGT00940000153761.B #36
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #12	ENSGT01030000234556.b.a #13	ENSGT00900000143333	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b #15	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099.g #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067.a #29	ENSGT01050000244848.B.a.a #30	ENSGT00730000110915.a #31	ENSGT00900000143762	ENSGT00390000006115 #32	ENSGT00940000162579 #33	ENSGT00390000007799 #34	ENSGT00390000004856.w.a.a.a ##35	ENSGT00940000153761.B #36
Steppe mouse	MODERN SPECIES	3372	Tmprss13 (ENSMSIG00000009716) #7	Il10ra (ENSMSIG00000009694) #8	Smim35 (ENSMSIG00000009683) #9	Tmprss4 (ENSMSIG00000009658) #10	Scn4b (ENSMSIG00000009647) #12	Scn2b (ENSMSIG00000009637) #13	ENSMSIG00000009629	Jaml (ENSMSIG00000009608) #14	Mpzl3 (ENSMSIG00000009582) #15	Mpzl2 (ENSMSIG00000009571) #16	Cd3e (ENSMSIG00000009548) #17	Cd3d (ENSMSIG00000009529) #18	Cd3g (ENSMSIG00000009511) #19	Ube4a (ENSMSIG00000009318) #20	ENSMSIG00000009300 #21	Kmt2a (ENSMSIG00000009111) #22	Ttc36 (ENSMSIG00000009102) #23	Tmem25 (ENSMSIG00000009032) #24	ENSMSIG00000008990 #25	Arcn1 (ENSMSIG00000008936) #26	Phldb1 (ENSMSIG00000007778) #27	Treh (ENSMSIG00000007667) #28	Ddx6 (ENSMSIG00000007642) #29	Cxcr5 (ENSMSIG00000007607) #30	Bcl9l (ENSMSIG00000007566) #31	ENSMSIG00000007556	ENSMSIG00000007385 #32	Ccdc84 (ENSMSIG00000007313) #34	Rps25 (ENSMSIG00000007253) ##35	Trappc4 (ENSMSIG00000007215) #36	Slc37a4 (ENSMSIG00000007152) #37
spretus	MODERN SPECIES	18	Tmprss13 (MGP_SPRETEiJ_G0033282) #7	Il10ra (MGP_SPRETEiJ_G0033281) #8	Smim35 (MGP_SPRETEiJ_G0033280) #9	Tmprss4 (MGP_SPRETEiJ_G0033279) #10	Scn4b (MGP_SPRETEiJ_G0033278) #12	Scn2b (MGP_SPRETEiJ_G0033277) #13	MGP_SPRETEiJ_G0033276	Jaml (MGP_SPRETEiJ_G0033275) #14	MGP_SPRETEiJ_G0033274	Mpzl2 (MGP_SPRETEiJ_G0033273) #16	Cd3e (MGP_SPRETEiJ_G0033272) #17	Cd3d (MGP_SPRETEiJ_G0033271) #18	Cd3g (MGP_SPRETEiJ_G0033270) #19	Ube4a (MGP_SPRETEiJ_G0033269) #20	Atp5l (MGP_SPRETEiJ_G0033268) #21	Kmt2a (MGP_SPRETEiJ_G0033267) #22	Ttc36 (MGP_SPRETEiJ_G0033266) #23	Tmem25 (MGP_SPRETEiJ_G0033265) #24	Ift46 (MGP_SPRETEiJ_G0033264) #25	Arcn1 (MGP_SPRETEiJ_G0033263) #26	Phldb1 (MGP_SPRETEiJ_G0033262) #27	Treh (MGP_SPRETEiJ_G0033261) #28	MGP_SPRETEiJ_G0033260 #22	Ddx6 (MGP_SPRETEiJ_G0033259) #29	Cxcr5 (MGP_SPRETEiJ_G0033258) #30	Bcl9l (MGP_SPRETEiJ_G0033257) #31	Upk2 (MGP_SPRETEiJ_G0033256) #32	MGP_SPRETEiJ_G0033255 #33	Ccdc84 (MGP_SPRETEiJ_G0033254) #34	Rps25 (MGP_SPRETEiJ_G0033253) ##35	Trappc4 (MGP_SPRETEiJ_G0033252) #36
Mouse	MODERN SPECIES	18	Fxyd6 (ENSMUSG00000066705)	Tmprss13 (ENSMUSG00000037129) #7	Il10ra (ENSMUSG00000032089) #8	Smim35 (ENSMUSG00000091996) #9	Tmprss4 (ENSMUSG00000032091) #10	Scn4b (ENSMUSG00000046480) #12	Scn2b (ENSMUSG00000070304) #13	Jaml (ENSMUSG00000048534) #14	Mpzl3 (ENSMUSG00000070305) #15	Mpzl2 (ENSMUSG00000032092) #16	Cd3e (ENSMUSG00000032093) #17	Cd3d (ENSMUSG00000032094) #18	Cd3g (ENSMUSG00000002033) #19	Ube4a (ENSMUSG00000059890) #20	Atp5l (ENSMUSG00000038717) #21	Kmt2a (ENSMUSG00000002028) #22	Ttc36 (ENSMUSG00000039438) #23	Tmem25 (ENSMUSG00000002032) #24	Ift46 (ENSMUSG00000002031) #25	Arcn1 (ENSMUSG00000032096) #26	Phldb1 (ENSMUSG00000048537) #27	Treh (ENSMUSG00000032098) #28	Ddx6 (ENSMUSG00000032097) #29	Cxcr5 (ENSMUSG00000047880) #30	Bcl9l (ENSMUSG00000063382) #31	Upk2 (ENSMUSG00000041523) #32	Foxr1 (ENSMUSG00000074397) #33	Ccdc84 (ENSMUSG00000043923) #34	Rps25 (ENSMUSG00000009927) ##35	Trappc4 (ENSMUSG00000032112) #36	Slc37a4 (ENSMUSG00000032114) #37
Ryukyu mouse	MODERN SPECIES	18	Fxyd6 (MGP_CAROLIEiJ_G0032144)	Tmprss13 (MGP_CAROLIEiJ_G0032143) #7	Il10ra (MGP_CAROLIEiJ_G0032142) #8	Smim35 (MGP_CAROLIEiJ_G0032141) #9	Tmprss4 (MGP_CAROLIEiJ_G0032140) #10	Scn4b (MGP_CAROLIEiJ_G0032139) #12	Scn2b (MGP_CAROLIEiJ_G0032138) #13	MGP_CAROLIEiJ_G0032137 #14	Mpzl3 (MGP_CAROLIEiJ_G0032136) #15	Mpzl2 (MGP_CAROLIEiJ_G0032135) #16	Cd3e (MGP_CAROLIEiJ_G0032134) #17	Cd3d (MGP_CAROLIEiJ_G0032133) #18	Cd3g (MGP_CAROLIEiJ_G0032132) #19	Ube4a (MGP_CAROLIEiJ_G0032131) #20	MGP_CAROLIEiJ_G0032130 #21	Kmt2a (MGP_CAROLIEiJ_G0032129) #22	Ttc36 (MGP_CAROLIEiJ_G0032128) #23	Tmem25 (MGP_CAROLIEiJ_G0032127) #24	Ift46 (MGP_CAROLIEiJ_G0032126) #25	Arcn1 (MGP_CAROLIEiJ_G0032125) #26	Phldb1 (MGP_CAROLIEiJ_G0032124) #27	Treh (MGP_CAROLIEiJ_G0032123) #28	Ddx6 (MGP_CAROLIEiJ_G0032122) #29	Cxcr5 (MGP_CAROLIEiJ_G0032121) #30	Bcl9l (MGP_CAROLIEiJ_G0032120) #31	Upk2 (MGP_CAROLIEiJ_G0032119) #32	MGP_CAROLIEiJ_G0032118 #33	Ccdc84 (MGP_CAROLIEiJ_G0032117) #34	MGP_CAROLIEiJ_G0032116 #35	Trappc4 (MGP_CAROLIEiJ_G0032115) #36	Slc37a4 (MGP_CAROLIEiJ_G0032114) #37
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000160099.h #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000160099.h #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000160099.h #22
spretus	MODERN SPECIES	18	Jaml (MGP_SPRETEiJ_G0033275) #14	MGP_SPRETEiJ_G0033274	Mpzl2 (MGP_SPRETEiJ_G0033273) #16	Cd3e (MGP_SPRETEiJ_G0033272) #17	Cd3d (MGP_SPRETEiJ_G0033271) #18	Cd3g (MGP_SPRETEiJ_G0033270) #19	Ube4a (MGP_SPRETEiJ_G0033269) #20	Atp5l (MGP_SPRETEiJ_G0033268) #21	Kmt2a (MGP_SPRETEiJ_G0033267) #22	Ttc36 (MGP_SPRETEiJ_G0033266) #23	Tmem25 (MGP_SPRETEiJ_G0033265) #24	Ift46 (MGP_SPRETEiJ_G0033264) #25	Arcn1 (MGP_SPRETEiJ_G0033263) #26	Phldb1 (MGP_SPRETEiJ_G0033262) #27	Treh (MGP_SPRETEiJ_G0033261) #28	MGP_SPRETEiJ_G0033260 #22	Ddx6 (MGP_SPRETEiJ_G0033259) #29	Cxcr5 (MGP_SPRETEiJ_G0033258) #30	Bcl9l (MGP_SPRETEiJ_G0033257) #31	Upk2 (MGP_SPRETEiJ_G0033256) #32	MGP_SPRETEiJ_G0033255 #33	Ccdc84 (MGP_SPRETEiJ_G0033254) #34	Rps25 (MGP_SPRETEiJ_G0033253) ##35	Trappc4 (MGP_SPRETEiJ_G0033252) #36	Slc37a4 (MGP_SPRETEiJ_G0033251) #37	Hyou1 (MGP_SPRETEiJ_G0033250)	Vps11 (MGP_SPRETEiJ_G0033249)	Hmbs (MGP_SPRETEiJ_G0033248)	H2ax (MGP_SPRETEiJ_G0033247)	Dpagt1 (MGP_SPRETEiJ_G0033246)	C2cd2l (MGP_SPRETEiJ_G0033245)
Shrew mouse	MODERN SPECIES	1	Tmprss13 (MGP_PahariEiJ_G0015013) #7	Il10ra (MGP_PahariEiJ_G0015012) #8	Smim35 (MGP_PahariEiJ_G0015011) #9	Tmprss4 (MGP_PahariEiJ_G0015010) #10	Scn4b (MGP_PahariEiJ_G0015009) #12	Scn2b (MGP_PahariEiJ_G0015008) #13	MGP_PahariEiJ_G0015007	Jaml (MGP_PahariEiJ_G0015006) #14	Mpzl3 (MGP_PahariEiJ_G0015005) #15	Mpzl2 (MGP_PahariEiJ_G0015004) #16	Cd3e (MGP_PahariEiJ_G0015003) #17	Cd3d (MGP_PahariEiJ_G0015002) #18	Cd3g (MGP_PahariEiJ_G0015001) #19	Ube4a (MGP_PahariEiJ_G0015000) #20	Atp5l (MGP_PahariEiJ_G0014999) #21	Kmt2a (MGP_PahariEiJ_G0014998) #22	Ttc36 (MGP_PahariEiJ_G0014997) #23	Tmem25 (MGP_PahariEiJ_G0014996) #24	Ift46 (MGP_PahariEiJ_G0014995) #25	MGP_PahariEiJ_G0014994 #26	Phldb1 (MGP_PahariEiJ_G0014993) #27	Treh (MGP_PahariEiJ_G0014992) #28	Ddx6 (MGP_PahariEiJ_G0014991) #29	Cxcr5 (MGP_PahariEiJ_G0014990) #30	Bcl9l (MGP_PahariEiJ_G0014989) #31	Upk2 (MGP_PahariEiJ_G0014988) #32	MGP_PahariEiJ_G0014987 #33	Ccdc84 (MGP_PahariEiJ_G0014986) #34	MGP_PahariEiJ_G0014985 ##35	Trappc4 (MGP_PahariEiJ_G0014984) #36	Slc37a4 (MGP_PahariEiJ_G0014983) #37
Rat	MODERN SPECIES	18	Fxyd2 (ENSRNOG00000016469)	Fxyd6 (ENSRNOG00000016412)	Tmprss13 (ENSRNOG00000016397) #7	Il10ra (ENSRNOG00000016308) #8	Tmprss4 (ENSRNOG00000026650) #10	Scn4b (ENSRNOG00000026679) #12	Scn2b (ENSRNOG00000063505) #13	Jaml (ENSRNOG00000026702) #14	Mpzl3 (ENSRNOG00000068913) #15	Mpzl2 (ENSRNOG00000016085) #16	Cd3e (ENSRNOG00000016069) #17	Cd3d (ENSRNOG00000015994) #18	Cd3g (ENSRNOG00000015945) #19	Ube4a (ENSRNOG00000026833) #20	Atp5mg (ENSRNOG00000028884) #21	Kmt2a (ENSRNOG00000015133) #22	Tmem25 (ENSRNOG00000014218) #24	Ift46 (ENSRNOG00000013919) #25	Arcn1 (ENSRNOG00000061108) #26	Phldb1 (ENSRNOG00000026985) #27	Treh (ENSRNOG00000052010) #28	Ddx6 (ENSRNOG00000053932) #29	Cxcr5 (ENSRNOG00000012430) #30	Bcl9l (ENSRNOG00000012420) #31	AC105645.5 (ENSRNOG00000059654)	Upk2 (ENSRNOG00000043324) #32	Foxr1 (ENSRNOG00000029089) #33	Cenatac (ENSRNOG00000012137) #34	Rps25 (ENSRNOG00000027503) #35	Trappc4 (ENSRNOG00000011904) #36	Slc37a4 (ENSRNOG00000011361) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1556	Fxyd2 (ENSNGAG00000004961)	Fxyd6 (ENSNGAG00000003475)	Tmprss13 (ENSNGAG00000014237) #7	Il10ra (ENSNGAG00000010496) #8	Smim35 (ENSNGAG00000012139) #9	Tmprss4 (ENSNGAG00000019991) #10	Scn4b (ENSNGAG00000015874) #12	Scn2b (ENSNGAG00000013030) #13	Jaml (ENSNGAG00000020902) #14	Mpzl3 (ENSNGAG00000019948) #15	Mpzl2 (ENSNGAG00000000464) #16	Cd3d (ENSNGAG00000016740) #18	Cd3g (ENSNGAG00000014724) #19	Ube4a (ENSNGAG00000000229) #20	ENSNGAG00000016066 #21	Kmt2a (ENSNGAG00000002146) #22	Ttc36 (ENSNGAG00000010115) #23	Tmem25 (ENSNGAG00000006219) #24	Ift46 (ENSNGAG00000011129) #25	Arcn1 (ENSNGAG00000017558) #26	ENSNGAG00000014903 #27	ENSNGAG00000019706 #27
Lesser Egyptian jerboa	MODERN SPECIES	142	Fxyd2 (ENSJJAG00000011850)	Fxyd6 (ENSJJAG00000011520)	Tmprss13 (ENSJJAG00000010732) #7	Il10ra (ENSJJAG00000009858) #8	Smim35 (ENSJJAG00000009586) #9	Tmprss4 (ENSJJAG00000008884) #10	Scn4b (ENSJJAG00000007080) #12	Scn2b (ENSJJAG00000006814) #13	Jaml (ENSJJAG00000004498) #14	Mpzl3 (ENSJJAG00000002975) #15	Cd3e (ENSJJAG00000021120) #17	Cd3d (ENSJJAG00000020818) #18	Cd3g (ENSJJAG00000020349) #19	Ube4a (ENSJJAG00000018361) #20	ENSJJAG00000016959 #21	Kmt2a (ENSJJAG00000013557) #22	Ttc36 (ENSJJAG00000010197) #23	Tmem25 (ENSJJAG00000009753) #24	Ift46 (ENSJJAG00000006967) #25	Arcn1 (ENSJJAG00000003043) #26	ENSJJAG00000001801 #27	ENSJJAG00000001011 #27	Treh (ENSJJAG00000022550) #28	Ddx6 (ENSJJAG00000021630) #29	Cxcr5 (ENSJJAG00000021162) #30	Bcl9l (ENSJJAG00000020684) #31	Upk2 (ENSJJAG00000020399) #32	Ccdc84 (ENSJJAG00000019698) #34	ENSJJAG00000018883 #35	Trappc4 (ENSJJAG00000018458) #36	Slc37a4 (ENSJJAG00000022735) #37
Kangaroo rat	MODERN SPECIES	329	Dscaml1 (ENSDORG00000010623)	ENSDORG00000010622	Fxyd6 (ENSDORG00000010626)	Tmprss13 (ENSDORG00000014616) #7	Tmprss4 (ENSDORG00000014916) #10	Scn4b (ENSDORG00000025459) #12	Scn2b (ENSDORG00000014911) #13	ENSDORG00000025814 #14	Mpzl3 (ENSDORG00000003430) #15	Mpzl2 (ENSDORG00000003431) #16	Cd3e (ENSDORG00000003432) #17	Cd3d (ENSDORG00000003434) #18	Cd3g (ENSDORG00000028888) #19	Ube4a (ENSDORG00000003437) #20	ENSDORG00000003439 #21	Kmt2a (ENSDORG00000007239) #22	Ttc36 (ENSDORG00000007243) #23	Tmem25 (ENSDORG00000007245) #24	Ift46 (ENSDORG00000007247) #25	Arcn1 (ENSDORG00000005139) #26	ENSDORG00000005141 #27	ENSDORG00000028204 #27	Treh (ENSDORG00000005147) #28	ENSDORG00000028223 #27	Ddx6 (ENSDORG00000001037) #29	Cxcr5 (ENSDORG00000000979) #30	ENSDORG00000000980 #31	Upk2 (ENSDORG00000000985) #32	Ccdc84 (ENSDORG00000001963) #34	Rps25 (ENSDORG00000001968) ##35	Trappc4 (ENSDORG00000001971) #36