Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #11	ENSGT01030000234556.b.a #12	ENSGT00900000143333 #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b ##11	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099.g #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067.a #30	ENSGT01050000244848.B.a.a #31	ENSGT00730000110915.a #32	ENSGT00900000143762	ENSGT00390000006115 #33	ENSGT00940000162579 #34	ENSGT00390000007799 #35	ENSGT00390000004856.w.a.a.a #36	ENSGT00940000153761.B #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #11	ENSGT01030000234556.b.a #12	ENSGT00900000143333 #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b ##11	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099.g #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067.a #30	ENSGT01050000244848.B.a.a #31	ENSGT00730000110915.a #32	ENSGT00900000143762	ENSGT00390000006115 #33	ENSGT00940000162579 #34	ENSGT00390000007799 #35	ENSGT00390000004856.w.a.a.a #36	ENSGT00940000153761.B #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000159197 #7	ENSGT00510000048847 #8	ENSGT00670000099483 #9	ENSGT01020000230389.a.a.a #10	ENSGT01030000234556.b.b.c #11	ENSGT01030000234556.b.a #12	ENSGT00900000143333 #13	ENSGT00440000034341 #14	ENSGT01030000234556.a.a.b ##11	ENSGT01030000234556.a.a.a #16	ENSGT00940000153312.B #17	ENSGT00940000153312.A.a.a #18	ENSGT00940000153312.A.a.b #19	ENSGT00390000009300.b #20	ENSGT00390000009724.l.i.a #21	ENSGT00940000160099.g #22	ENSGT00390000007968 #23	ENSGT01080000257333.B #24	ENSGT00390000005544 #25	ENSGT00390000017207 #26	ENSGT00940000155231.b #27	ENSGT00390000006949 #28	ENSGT00900000141067.a #30	ENSGT01050000244848.B.a.a #31	ENSGT00730000110915.a #32	ENSGT00900000143762	ENSGT00390000006115 #33	ENSGT00940000162579 #34	ENSGT00390000007799 #35	ENSGT00390000004856.w.a.a.a #36	ENSGT00940000153761.B #37
spretus	MODERN SPECIES	18	Tmprss13 (MGP_SPRETEiJ_G0033282) #7	Il10ra (MGP_SPRETEiJ_G0033281) #8	Smim35 (MGP_SPRETEiJ_G0033280) #9	Tmprss4 (MGP_SPRETEiJ_G0033279) #10	Scn4b (MGP_SPRETEiJ_G0033278) #11	Scn2b (MGP_SPRETEiJ_G0033277) #12	MGP_SPRETEiJ_G0033276 #13	Jaml (MGP_SPRETEiJ_G0033275) #14	MGP_SPRETEiJ_G0033274 #15	Mpzl2 (MGP_SPRETEiJ_G0033273) #16	Cd3e (MGP_SPRETEiJ_G0033272) #17	Cd3d (MGP_SPRETEiJ_G0033271) #18	Cd3g (MGP_SPRETEiJ_G0033270) #19	Ube4a (MGP_SPRETEiJ_G0033269) #20	Atp5l (MGP_SPRETEiJ_G0033268) #21	Kmt2a (MGP_SPRETEiJ_G0033267) #22	Ttc36 (MGP_SPRETEiJ_G0033266) #23	Tmem25 (MGP_SPRETEiJ_G0033265) #24	Ift46 (MGP_SPRETEiJ_G0033264) #25	Arcn1 (MGP_SPRETEiJ_G0033263) #26	Phldb1 (MGP_SPRETEiJ_G0033262) #27	Treh (MGP_SPRETEiJ_G0033261) #28	MGP_SPRETEiJ_G0033260 #29	Ddx6 (MGP_SPRETEiJ_G0033259) #30	Cxcr5 (MGP_SPRETEiJ_G0033258) #31	Bcl9l (MGP_SPRETEiJ_G0033257) #32	Upk2 (MGP_SPRETEiJ_G0033256) #33	MGP_SPRETEiJ_G0033255 #34	Ccdc84 (MGP_SPRETEiJ_G0033254) #35	Rps25 (MGP_SPRETEiJ_G0033253) #36	Trappc4 (MGP_SPRETEiJ_G0033252) #37
Steppe mouse	MODERN SPECIES	3372	Tmprss13 (ENSMSIG00000009716) #7	Il10ra (ENSMSIG00000009694) #8	Smim35 (ENSMSIG00000009683) #9	Tmprss4 (ENSMSIG00000009658) #10	Scn4b (ENSMSIG00000009647) #11	Scn2b (ENSMSIG00000009637) #12	ENSMSIG00000009629 #13	Jaml (ENSMSIG00000009608) #14	Mpzl3 (ENSMSIG00000009582) ##11	Mpzl2 (ENSMSIG00000009571) #16	Cd3e (ENSMSIG00000009548) #17	Cd3d (ENSMSIG00000009529) #18	Cd3g (ENSMSIG00000009511) #19	Ube4a (ENSMSIG00000009318) #20	ENSMSIG00000009300 #21	Kmt2a (ENSMSIG00000009111) #22	Ttc36 (ENSMSIG00000009102) #23	Tmem25 (ENSMSIG00000009032) #24	ENSMSIG00000008990 #25	Arcn1 (ENSMSIG00000008936) #26	Phldb1 (ENSMSIG00000007778) #27	Treh (ENSMSIG00000007667) #28	Ddx6 (ENSMSIG00000007642) #30	Cxcr5 (ENSMSIG00000007607) #31	Bcl9l (ENSMSIG00000007566) #32	ENSMSIG00000007556	ENSMSIG00000007385 #33	Ccdc84 (ENSMSIG00000007313) #35	Rps25 (ENSMSIG00000007253) #36	Trappc4 (ENSMSIG00000007215) #37	Slc37a4 (ENSMSIG00000007152)
Mouse	MODERN SPECIES	18	Fxyd6 (ENSMUSG00000066705)	Tmprss13 (ENSMUSG00000037129) #7	Il10ra (ENSMUSG00000032089) #8	Smim35 (ENSMUSG00000091996) #9	Tmprss4 (ENSMUSG00000032091) #10	Scn4b (ENSMUSG00000046480) #11	Scn2b (ENSMUSG00000070304) #12	Jaml (ENSMUSG00000048534) #14	Mpzl3 (ENSMUSG00000070305) ##11	Mpzl2 (ENSMUSG00000032092) #16	Cd3e (ENSMUSG00000032093) #17	Cd3d (ENSMUSG00000032094) #18	Cd3g (ENSMUSG00000002033) #19	Ube4a (ENSMUSG00000059890) #20	Atp5l (ENSMUSG00000038717) #21	Kmt2a (ENSMUSG00000002028) #22	Ttc36 (ENSMUSG00000039438) #23	Tmem25 (ENSMUSG00000002032) #24	Ift46 (ENSMUSG00000002031) #25	Arcn1 (ENSMUSG00000032096) #26	Phldb1 (ENSMUSG00000048537) #27	Treh (ENSMUSG00000032098) #28	Ddx6 (ENSMUSG00000032097) #30	Cxcr5 (ENSMUSG00000047880) #31	Bcl9l (ENSMUSG00000063382) #32	Upk2 (ENSMUSG00000041523) #33	Foxr1 (ENSMUSG00000074397) #34	Ccdc84 (ENSMUSG00000043923) #35	Rps25 (ENSMUSG00000009927) #36	Trappc4 (ENSMUSG00000032112) #37	Slc37a4 (ENSMUSG00000032114)
Ryukyu mouse	MODERN SPECIES	18	Fxyd6 (MGP_CAROLIEiJ_G0032144)	Tmprss13 (MGP_CAROLIEiJ_G0032143) #7	Il10ra (MGP_CAROLIEiJ_G0032142) #8	Smim35 (MGP_CAROLIEiJ_G0032141) #9	Tmprss4 (MGP_CAROLIEiJ_G0032140) #10	Scn4b (MGP_CAROLIEiJ_G0032139) #11	Scn2b (MGP_CAROLIEiJ_G0032138) #12	MGP_CAROLIEiJ_G0032137 #14	Mpzl3 (MGP_CAROLIEiJ_G0032136) ##11	Mpzl2 (MGP_CAROLIEiJ_G0032135) #16	Cd3e (MGP_CAROLIEiJ_G0032134) #17	Cd3d (MGP_CAROLIEiJ_G0032133) #18	Cd3g (MGP_CAROLIEiJ_G0032132) #19	Ube4a (MGP_CAROLIEiJ_G0032131) #20	MGP_CAROLIEiJ_G0032130 ##21	Kmt2a (MGP_CAROLIEiJ_G0032129) #22	Ttc36 (MGP_CAROLIEiJ_G0032128) #23	Tmem25 (MGP_CAROLIEiJ_G0032127) #24	Ift46 (MGP_CAROLIEiJ_G0032126) #25	Arcn1 (MGP_CAROLIEiJ_G0032125) #26	Phldb1 (MGP_CAROLIEiJ_G0032124) #27	Treh (MGP_CAROLIEiJ_G0032123) #28	Ddx6 (MGP_CAROLIEiJ_G0032122) #30	Cxcr5 (MGP_CAROLIEiJ_G0032121) #31	Bcl9l (MGP_CAROLIEiJ_G0032120) #32	Upk2 (MGP_CAROLIEiJ_G0032119) #33	MGP_CAROLIEiJ_G0032118 #34	Ccdc84 (MGP_CAROLIEiJ_G0032117) #35	MGP_CAROLIEiJ_G0032116 ##36	Trappc4 (MGP_CAROLIEiJ_G0032115) #37	Slc37a4 (MGP_CAROLIEiJ_G0032114)
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000160099.h #29
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000160099.h #29
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000160099.h #29
spretus	MODERN SPECIES	18	Jaml (MGP_SPRETEiJ_G0033275) #14	MGP_SPRETEiJ_G0033274 #15	Mpzl2 (MGP_SPRETEiJ_G0033273) #16	Cd3e (MGP_SPRETEiJ_G0033272) #17	Cd3d (MGP_SPRETEiJ_G0033271) #18	Cd3g (MGP_SPRETEiJ_G0033270) #19	Ube4a (MGP_SPRETEiJ_G0033269) #20	Atp5l (MGP_SPRETEiJ_G0033268) #21	Kmt2a (MGP_SPRETEiJ_G0033267) #22	Ttc36 (MGP_SPRETEiJ_G0033266) #23	Tmem25 (MGP_SPRETEiJ_G0033265) #24	Ift46 (MGP_SPRETEiJ_G0033264) #25	Arcn1 (MGP_SPRETEiJ_G0033263) #26	Phldb1 (MGP_SPRETEiJ_G0033262) #27	Treh (MGP_SPRETEiJ_G0033261) #28	MGP_SPRETEiJ_G0033260 #29	Ddx6 (MGP_SPRETEiJ_G0033259) #30	Cxcr5 (MGP_SPRETEiJ_G0033258) #31	Bcl9l (MGP_SPRETEiJ_G0033257) #32	Upk2 (MGP_SPRETEiJ_G0033256) #33	MGP_SPRETEiJ_G0033255 #34	Ccdc84 (MGP_SPRETEiJ_G0033254) #35	Rps25 (MGP_SPRETEiJ_G0033253) #36	Trappc4 (MGP_SPRETEiJ_G0033252) #37	Slc37a4 (MGP_SPRETEiJ_G0033251)	Hyou1 (MGP_SPRETEiJ_G0033250)	Vps11 (MGP_SPRETEiJ_G0033249)	Hmbs (MGP_SPRETEiJ_G0033248)	H2ax (MGP_SPRETEiJ_G0033247)	Dpagt1 (MGP_SPRETEiJ_G0033246)	C2cd2l (MGP_SPRETEiJ_G0033245)