Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000015876 #23	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b
Tree shrew	MODERN SPECIES	2762													ENSTBEG00000009999 #19	PAX3 (ENSTBEG00000010268) #20	ENSTBEG00000010676 #21	KMT2A (ENSTBEG00000010928) #22	ENSTBEG00000012632 #23	TTC36 (ENSTBEG00000013127) #24	TMEM25 (ENSTBEG00000013370) #25
Glires	ANCESTRAL SPECIES	1	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Muroidea	ANCESTRAL SPECIES	29	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Chinese hamster chok1gshd	MODERN SPECIES	284	Il10ra (ENSCGRG00001007663)	Smim35 (ENSCGRG00001005398)	Tmprss4 (ENSCGRG00001023270)	Scn4b (ENSCGRG00001023168)	Scn2b (ENSCGRG00001024766)	ENSCGRG00001012141	Jaml (ENSCGRG00001013774)	Mpzl3 (ENSCGRG00001019761)	Mpzl2 (ENSCGRG00001014975)	Cd3e (ENSCGRG00001012232)	Cd3d (ENSCGRG00001015398)	Cd3g (ENSCGRG00001019076)	Ube4a (ENSCGRG00001000814)	ENSCGRG00001013811	ENSCGRG00001014430 #19	Kmt2a (ENSCGRG00001019200) #22	Ttc36 (ENSCGRG00001023946) #24	Tmem25 (ENSCGRG00001018640) #25	Ift46 (ENSCGRG00001024448)	Arcn1 (ENSCGRG00001012306)	Phldb1 (ENSCGRG00001023739)	Treh (ENSCGRG00001023761)	Ddx6 (ENSCGRG00001023465)	Cxcr5 (ENSCGRG00001024674)	Bcl9l (ENSCGRG00001024818)	Upk2 (ENSCGRG00001014244)	Ccdc84 (ENSCGRG00001014231)	Rps25 (ENSCGRG00001019533)	Trappc4 (ENSCGRG00001017744)	Slc37a4 (ENSCGRG00001018650)	Hyou1 (ENSCGRG00001003994)
Golden Hamster	MODERN SPECIES	635	Fxyd6 (ENSMAUG00000015946)	Tmprss13 (ENSMAUG00000012207)	Il10ra (ENSMAUG00000019337)	Smim35 (ENSMAUG00000012776)	Tmprss4 (ENSMAUG00000002659)	Scn4b (ENSMAUG00000001092)	Scn2b (ENSMAUG00000005867)	Jaml (ENSMAUG00000020096)	Mpzl3 (ENSMAUG00000008200)	Mpzl2 (ENSMAUG00000016377)	Cd3e (ENSMAUG00000009806)	Cd3d (ENSMAUG00000008047)	Cd3g (ENSMAUG00000008447)	Ube4a (ENSMAUG00000009626)	ENSMAUG00000007759 #19	Kmt2a (ENSMAUG00000021169) #22	Ttc36 (ENSMAUG00000021050) #24	Tmem25 (ENSMAUG00000016363) #25	Ift46 (ENSMAUG00000019582)	Arcn1 (ENSMAUG00000014545)	Phldb1 (ENSMAUG00000020398)	Treh (ENSMAUG00000011452)	Ddx6 (ENSMAUG00000008886)	Cxcr5 (ENSMAUG00000009745)	Bcl9l (ENSMAUG00000010868)	Upk2 (ENSMAUG00000008297)	ENSMAUG00000007602	Ccdc84 (ENSMAUG00000017579)	ENSMAUG00000015338	Trappc4 (ENSMAUG00000002801)	Slc37a4 (ENSMAUG00000014974)
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Prairie vole	MODERN SPECIES	13	Fxyd6 (ENSMOCG00000021955)	Tmprss13 (ENSMOCG00000011469)	Il10ra (ENSMOCG00000006059)	Smim35 (ENSMOCG00000004113)	Tmprss4 (ENSMOCG00000018074)	Scn4b (ENSMOCG00000011126)	Scn2b (ENSMOCG00000004941)	Jaml (ENSMOCG00000018068)	Mpzl3 (ENSMOCG00000006399)	Mpzl2 (ENSMOCG00000019208)	Cd3e (ENSMOCG00000014849)	Cd3d (ENSMOCG00000012672)	Cd3g (ENSMOCG00000009938)	Ube4a (ENSMOCG00000016795)	ENSMOCG00000021833 #19	Kmt2a (ENSMOCG00000018194) #22	Ttc36 (ENSMOCG00000013970) #24	Tmem25 (ENSMOCG00000007841) #25	Ift46 (ENSMOCG00000018681)	Arcn1 (ENSMOCG00000015719)	ENSMOCG00000002506	ENSMOCG00000018806	Treh (ENSMOCG00000013089)	Ddx6 (ENSMOCG00000002068)	ENSMOCG00000005250	Cxcr5 (ENSMOCG00000004685)	Bcl9l (ENSMOCG00000003894)	Upk2 (ENSMOCG00000017361)	Ccdc84 (ENSMOCG00000003483)	ENSMOCG00000004656	Trappc4 (ENSMOCG00000004337)
Northern American deer mouse	MODERN SPECIES	20	Tmprss13 (ENSPEMG00000016764)	Il10ra (ENSPEMG00000026837)	Smim35 (ENSPEMG00000018417)	Tmprss4 (ENSPEMG00000020454)	Scn4b (ENSPEMG00000030356)	Scn2b (ENSPEMG00000011352)	Jaml (ENSPEMG00000022735)	Mpzl3 (ENSPEMG00000029525)	Mpzl2 (ENSPEMG00000028071)	Cd3e (ENSPEMG00000020734)	Cd3d (ENSPEMG00000016314)	Cd3g (ENSPEMG00000021447)	ENSPEMG00000012032	Ube4a (ENSPEMG00000024077)	ENSPEMG00000022226 #19	Kmt2a (ENSPEMG00000015561) #22	Ttc36 (ENSPEMG00000013427) #24	Tmem25 (ENSPEMG00000007531) #25	Ift46 (ENSPEMG00000012188)	Arcn1 (ENSPEMG00000010270)	Phldb1 (ENSPEMG00000024138)	ENSPEMG00000024564	Treh (ENSPEMG00000016610)	Ddx6 (ENSPEMG00000024913)	Cxcr5 (ENSPEMG00000001412)	Bcl9l (ENSPEMG00000024270)	Upk2 (ENSPEMG00000000692)	Foxr1 (ENSPEMG00000007335)	Ccdc84 (ENSPEMG00000016054)	Rps25 (ENSPEMG00000001128)	Trappc4 (ENSPEMG00000024221)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l.i.a #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00390000004856.w.a.a.a
Mus	ANCESTRAL SPECIES	4	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l.i.a #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l.i.a #19	ENSGT00940000160099.g #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067.a	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l.i.a #19	ENSGT00940000160099.g #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067.a	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00900000143333	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l.i.a #19	ENSGT00940000160099.g #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067.a	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B
Steppe mouse	MODERN SPECIES	3372	Tmprss13 (ENSMSIG00000009716)	Il10ra (ENSMSIG00000009694)	Smim35 (ENSMSIG00000009683)	Tmprss4 (ENSMSIG00000009658)	Scn4b (ENSMSIG00000009647)	Scn2b (ENSMSIG00000009637)	ENSMSIG00000009629	Jaml (ENSMSIG00000009608)	Mpzl3 (ENSMSIG00000009582)	Mpzl2 (ENSMSIG00000009571)	Cd3e (ENSMSIG00000009548)	Cd3d (ENSMSIG00000009529)	Cd3g (ENSMSIG00000009511)	Ube4a (ENSMSIG00000009318)	ENSMSIG00000009300 #19	Kmt2a (ENSMSIG00000009111) #22	Ttc36 (ENSMSIG00000009102) #24	Tmem25 (ENSMSIG00000009032) #25	ENSMSIG00000008990	Arcn1 (ENSMSIG00000008936)	Phldb1 (ENSMSIG00000007778)	Treh (ENSMSIG00000007667)	Ddx6 (ENSMSIG00000007642)	Cxcr5 (ENSMSIG00000007607)	Bcl9l (ENSMSIG00000007566)	ENSMSIG00000007556	ENSMSIG00000007385	Ccdc84 (ENSMSIG00000007313)	Rps25 (ENSMSIG00000007253)	Trappc4 (ENSMSIG00000007215)	Slc37a4 (ENSMSIG00000007152)
spretus	MODERN SPECIES	18	Tmprss13 (MGP_SPRETEiJ_G0033282)	Il10ra (MGP_SPRETEiJ_G0033281)	Smim35 (MGP_SPRETEiJ_G0033280)	Tmprss4 (MGP_SPRETEiJ_G0033279)	Scn4b (MGP_SPRETEiJ_G0033278)	Scn2b (MGP_SPRETEiJ_G0033277)	MGP_SPRETEiJ_G0033276	Jaml (MGP_SPRETEiJ_G0033275)	MGP_SPRETEiJ_G0033274	Mpzl2 (MGP_SPRETEiJ_G0033273)	Cd3e (MGP_SPRETEiJ_G0033272)	Cd3d (MGP_SPRETEiJ_G0033271)	Cd3g (MGP_SPRETEiJ_G0033270)	Ube4a (MGP_SPRETEiJ_G0033269)	Atp5l (MGP_SPRETEiJ_G0033268) #19	Kmt2a (MGP_SPRETEiJ_G0033267) #22	Ttc36 (MGP_SPRETEiJ_G0033266) #24	Tmem25 (MGP_SPRETEiJ_G0033265) #25	Ift46 (MGP_SPRETEiJ_G0033264)	Arcn1 (MGP_SPRETEiJ_G0033263)	Phldb1 (MGP_SPRETEiJ_G0033262)	Treh (MGP_SPRETEiJ_G0033261)	MGP_SPRETEiJ_G0033260 #22	Ddx6 (MGP_SPRETEiJ_G0033259)	Cxcr5 (MGP_SPRETEiJ_G0033258)	Bcl9l (MGP_SPRETEiJ_G0033257)	Upk2 (MGP_SPRETEiJ_G0033256)	MGP_SPRETEiJ_G0033255	Ccdc84 (MGP_SPRETEiJ_G0033254)	Rps25 (MGP_SPRETEiJ_G0033253)	Trappc4 (MGP_SPRETEiJ_G0033252)
Mouse	MODERN SPECIES	18	Fxyd6 (ENSMUSG00000066705)	Tmprss13 (ENSMUSG00000037129)	Il10ra (ENSMUSG00000032089)	Smim35 (ENSMUSG00000091996)	Tmprss4 (ENSMUSG00000032091)	Scn4b (ENSMUSG00000046480)	Scn2b (ENSMUSG00000070304)	Jaml (ENSMUSG00000048534)	Mpzl3 (ENSMUSG00000070305)	Mpzl2 (ENSMUSG00000032092)	Cd3e (ENSMUSG00000032093)	Cd3d (ENSMUSG00000032094)	Cd3g (ENSMUSG00000002033)	Ube4a (ENSMUSG00000059890)	Atp5l (ENSMUSG00000038717) #19	Kmt2a (ENSMUSG00000002028) #22	Ttc36 (ENSMUSG00000039438) #24	Tmem25 (ENSMUSG00000002032) #25	Ift46 (ENSMUSG00000002031)	Arcn1 (ENSMUSG00000032096)	Phldb1 (ENSMUSG00000048537)	Treh (ENSMUSG00000032098)	Ddx6 (ENSMUSG00000032097)	Cxcr5 (ENSMUSG00000047880)	Bcl9l (ENSMUSG00000063382)	Upk2 (ENSMUSG00000041523)	Foxr1 (ENSMUSG00000074397)	Ccdc84 (ENSMUSG00000043923)	Rps25 (ENSMUSG00000009927)	Trappc4 (ENSMUSG00000032112)	Slc37a4 (ENSMUSG00000032114)
Ryukyu mouse	MODERN SPECIES	18	Fxyd6 (MGP_CAROLIEiJ_G0032144)	Tmprss13 (MGP_CAROLIEiJ_G0032143)	Il10ra (MGP_CAROLIEiJ_G0032142)	Smim35 (MGP_CAROLIEiJ_G0032141)	Tmprss4 (MGP_CAROLIEiJ_G0032140)	Scn4b (MGP_CAROLIEiJ_G0032139)	Scn2b (MGP_CAROLIEiJ_G0032138)	MGP_CAROLIEiJ_G0032137	Mpzl3 (MGP_CAROLIEiJ_G0032136)	Mpzl2 (MGP_CAROLIEiJ_G0032135)	Cd3e (MGP_CAROLIEiJ_G0032134)	Cd3d (MGP_CAROLIEiJ_G0032133)	Cd3g (MGP_CAROLIEiJ_G0032132)	Ube4a (MGP_CAROLIEiJ_G0032131)	MGP_CAROLIEiJ_G0032130 #19	Kmt2a (MGP_CAROLIEiJ_G0032129) #22	Ttc36 (MGP_CAROLIEiJ_G0032128) #24	Tmem25 (MGP_CAROLIEiJ_G0032127) #25	Ift46 (MGP_CAROLIEiJ_G0032126)	Arcn1 (MGP_CAROLIEiJ_G0032125)	Phldb1 (MGP_CAROLIEiJ_G0032124)	Treh (MGP_CAROLIEiJ_G0032123)	Ddx6 (MGP_CAROLIEiJ_G0032122)	Cxcr5 (MGP_CAROLIEiJ_G0032121)	Bcl9l (MGP_CAROLIEiJ_G0032120)	Upk2 (MGP_CAROLIEiJ_G0032119)	MGP_CAROLIEiJ_G0032118	Ccdc84 (MGP_CAROLIEiJ_G0032117)	MGP_CAROLIEiJ_G0032116	Trappc4 (MGP_CAROLIEiJ_G0032115)	Slc37a4 (MGP_CAROLIEiJ_G0032114)
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000160099.h #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000160099.h #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000160099.h #22
spretus	MODERN SPECIES	18	Jaml (MGP_SPRETEiJ_G0033275)	MGP_SPRETEiJ_G0033274	Mpzl2 (MGP_SPRETEiJ_G0033273)	Cd3e (MGP_SPRETEiJ_G0033272)	Cd3d (MGP_SPRETEiJ_G0033271)	Cd3g (MGP_SPRETEiJ_G0033270)	Ube4a (MGP_SPRETEiJ_G0033269)	Atp5l (MGP_SPRETEiJ_G0033268) #19	Kmt2a (MGP_SPRETEiJ_G0033267) #22	Ttc36 (MGP_SPRETEiJ_G0033266) #24	Tmem25 (MGP_SPRETEiJ_G0033265) #25	Ift46 (MGP_SPRETEiJ_G0033264)	Arcn1 (MGP_SPRETEiJ_G0033263)	Phldb1 (MGP_SPRETEiJ_G0033262)	Treh (MGP_SPRETEiJ_G0033261)	MGP_SPRETEiJ_G0033260 #22	Ddx6 (MGP_SPRETEiJ_G0033259)	Cxcr5 (MGP_SPRETEiJ_G0033258)	Bcl9l (MGP_SPRETEiJ_G0033257)	Upk2 (MGP_SPRETEiJ_G0033256)	MGP_SPRETEiJ_G0033255	Ccdc84 (MGP_SPRETEiJ_G0033254)	Rps25 (MGP_SPRETEiJ_G0033253)	Trappc4 (MGP_SPRETEiJ_G0033252)	Slc37a4 (MGP_SPRETEiJ_G0033251)	Hyou1 (MGP_SPRETEiJ_G0033250)	Vps11 (MGP_SPRETEiJ_G0033249)	Hmbs (MGP_SPRETEiJ_G0033248)	H2ax (MGP_SPRETEiJ_G0033247)	Dpagt1 (MGP_SPRETEiJ_G0033246)	C2cd2l (MGP_SPRETEiJ_G0033245)
Shrew mouse	MODERN SPECIES	1	Tmprss13 (MGP_PahariEiJ_G0015013)	Il10ra (MGP_PahariEiJ_G0015012)	Smim35 (MGP_PahariEiJ_G0015011)	Tmprss4 (MGP_PahariEiJ_G0015010)	Scn4b (MGP_PahariEiJ_G0015009)	Scn2b (MGP_PahariEiJ_G0015008)	MGP_PahariEiJ_G0015007	Jaml (MGP_PahariEiJ_G0015006)	Mpzl3 (MGP_PahariEiJ_G0015005)	Mpzl2 (MGP_PahariEiJ_G0015004)	Cd3e (MGP_PahariEiJ_G0015003)	Cd3d (MGP_PahariEiJ_G0015002)	Cd3g (MGP_PahariEiJ_G0015001)	Ube4a (MGP_PahariEiJ_G0015000)	Atp5l (MGP_PahariEiJ_G0014999) #19	Kmt2a (MGP_PahariEiJ_G0014998) #22	Ttc36 (MGP_PahariEiJ_G0014997) #24	Tmem25 (MGP_PahariEiJ_G0014996) #25	Ift46 (MGP_PahariEiJ_G0014995)	MGP_PahariEiJ_G0014994	Phldb1 (MGP_PahariEiJ_G0014993)	Treh (MGP_PahariEiJ_G0014992)	Ddx6 (MGP_PahariEiJ_G0014991)	Cxcr5 (MGP_PahariEiJ_G0014990)	Bcl9l (MGP_PahariEiJ_G0014989)	Upk2 (MGP_PahariEiJ_G0014988)	MGP_PahariEiJ_G0014987	Ccdc84 (MGP_PahariEiJ_G0014986)	MGP_PahariEiJ_G0014985	Trappc4 (MGP_PahariEiJ_G0014984)	Slc37a4 (MGP_PahariEiJ_G0014983)
Rat	MODERN SPECIES	18	Fxyd2 (ENSRNOG00000016469)	Fxyd6 (ENSRNOG00000016412)	Tmprss13 (ENSRNOG00000016397)	Il10ra (ENSRNOG00000016308)	Tmprss4 (ENSRNOG00000026650)	Scn4b (ENSRNOG00000026679)	Scn2b (ENSRNOG00000063505)	Jaml (ENSRNOG00000026702)	Mpzl3 (ENSRNOG00000068913)	Mpzl2 (ENSRNOG00000016085)	Cd3e (ENSRNOG00000016069)	Cd3d (ENSRNOG00000015994)	Cd3g (ENSRNOG00000015945)	Ube4a (ENSRNOG00000026833)	Atp5mg (ENSRNOG00000028884) #19	Kmt2a (ENSRNOG00000015133) #22	Tmem25 (ENSRNOG00000014218) #25	Ift46 (ENSRNOG00000013919)	Arcn1 (ENSRNOG00000061108)	Phldb1 (ENSRNOG00000026985)	Treh (ENSRNOG00000052010)	Ddx6 (ENSRNOG00000053932)	Cxcr5 (ENSRNOG00000012430)	Bcl9l (ENSRNOG00000012420)	AC105645.5 (ENSRNOG00000059654)	Upk2 (ENSRNOG00000043324)	Foxr1 (ENSRNOG00000029089)	Cenatac (ENSRNOG00000012137)	Rps25 (ENSRNOG00000027503)	Trappc4 (ENSRNOG00000011904)	Slc37a4 (ENSRNOG00000011361)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1556	Fxyd2 (ENSNGAG00000004961)	Fxyd6 (ENSNGAG00000003475)	Tmprss13 (ENSNGAG00000014237)	Il10ra (ENSNGAG00000010496)	Smim35 (ENSNGAG00000012139)	Tmprss4 (ENSNGAG00000019991)	Scn4b (ENSNGAG00000015874)	Scn2b (ENSNGAG00000013030)	Jaml (ENSNGAG00000020902)	Mpzl3 (ENSNGAG00000019948)	Mpzl2 (ENSNGAG00000000464)	Cd3d (ENSNGAG00000016740)	Cd3g (ENSNGAG00000014724)	Ube4a (ENSNGAG00000000229)	ENSNGAG00000016066 #19	Kmt2a (ENSNGAG00000002146) #22	Ttc36 (ENSNGAG00000010115) #24	Tmem25 (ENSNGAG00000006219) #25	Ift46 (ENSNGAG00000011129)	Arcn1 (ENSNGAG00000017558)	ENSNGAG00000014903	ENSNGAG00000019706
Lesser Egyptian jerboa	MODERN SPECIES	142	Fxyd2 (ENSJJAG00000011850)	Fxyd6 (ENSJJAG00000011520)	Tmprss13 (ENSJJAG00000010732)	Il10ra (ENSJJAG00000009858)	Smim35 (ENSJJAG00000009586)	Tmprss4 (ENSJJAG00000008884)	Scn4b (ENSJJAG00000007080)	Scn2b (ENSJJAG00000006814)	Jaml (ENSJJAG00000004498)	Mpzl3 (ENSJJAG00000002975)	Cd3e (ENSJJAG00000021120)	Cd3d (ENSJJAG00000020818)	Cd3g (ENSJJAG00000020349)	Ube4a (ENSJJAG00000018361)	ENSJJAG00000016959 #19	Kmt2a (ENSJJAG00000013557) #22	Ttc36 (ENSJJAG00000010197) #24	Tmem25 (ENSJJAG00000009753) #25	Ift46 (ENSJJAG00000006967)	Arcn1 (ENSJJAG00000003043)	ENSJJAG00000001801	ENSJJAG00000001011	Treh (ENSJJAG00000022550)	Ddx6 (ENSJJAG00000021630)	Cxcr5 (ENSJJAG00000021162)	Bcl9l (ENSJJAG00000020684)	Upk2 (ENSJJAG00000020399)	Ccdc84 (ENSJJAG00000019698)	ENSJJAG00000018883	Trappc4 (ENSJJAG00000018458)	Slc37a4 (ENSJJAG00000022735)
Kangaroo rat	MODERN SPECIES	329	Dscaml1 (ENSDORG00000010623)	ENSDORG00000010622	Fxyd6 (ENSDORG00000010626)	Tmprss13 (ENSDORG00000014616)	Tmprss4 (ENSDORG00000014916)	Scn4b (ENSDORG00000025459)	Scn2b (ENSDORG00000014911)	ENSDORG00000025814	Mpzl3 (ENSDORG00000003430)	Mpzl2 (ENSDORG00000003431)	Cd3e (ENSDORG00000003432)	Cd3d (ENSDORG00000003434)	Cd3g (ENSDORG00000028888)	Ube4a (ENSDORG00000003437)	ENSDORG00000003439 #19	Kmt2a (ENSDORG00000007239) #22	Ttc36 (ENSDORG00000007243) #24	Tmem25 (ENSDORG00000007245) #25	Ift46 (ENSDORG00000007247)	Arcn1 (ENSDORG00000005139)	ENSDORG00000005141	ENSDORG00000028204	Treh (ENSDORG00000005147)	ENSDORG00000028223	Ddx6 (ENSDORG00000001037)	Cxcr5 (ENSDORG00000000979)	ENSDORG00000000980	Upk2 (ENSDORG00000000985)	Ccdc84 (ENSDORG00000001963)	Rps25 (ENSDORG00000001968)	Trappc4 (ENSDORG00000001971)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Long-tailed chinchilla	MODERN SPECIES	119	TMPRSS13 (ENSCLAG00000015251)	IL10RA (ENSCLAG00000011658)	SMIM35 (ENSCLAG00000011882)	TMPRSS4 (ENSCLAG00000012156)	ENSCLAG00000017818	SCN4B (ENSCLAG00000013104)	SCN2B (ENSCLAG00000012371)	ENSCLAG00000015391	MPZL3 (ENSCLAG00000012975)	MPZL2 (ENSCLAG00000013369)	CD3E (ENSCLAG00000012378)	CD3D (ENSCLAG00000013677)	CD3G (ENSCLAG00000013148)	UBE4A (ENSCLAG00000015122)	ENSCLAG00000013433 #19	KMT2A (ENSCLAG00000016132) #22	TTC36 (ENSCLAG00000014598) #24	TMEM25 (ENSCLAG00000012417) #25	IFT46 (ENSCLAG00000012829)	ARCN1 (ENSCLAG00000013503)	PHLDB1 (ENSCLAG00000016433)	TREH (ENSCLAG00000017238)	DDX6 (ENSCLAG00000016749)	CXCR5 (ENSCLAG00000014587)	BCL9L (ENSCLAG00000016475)	UPK2 (ENSCLAG00000014907)	FOXR1 (ENSCLAG00000017051)	CENATAC (ENSCLAG00000014684)	RPS25 (ENSCLAG00000011816)	TRAPPC4 (ENSCLAG00000015643)	SLC37A4 (ENSCLAG00000015915)
Degu	MODERN SPECIES	121	ENSODEG00000008922	SMIM35 (ENSODEG00000008714)	TMPRSS4 (ENSODEG00000007951)	SCN4B (ENSODEG00000013244)	SCN2B (ENSODEG00000008892)	ENSODEG00000008362	ENSODEG00000013916	MPZL3 (ENSODEG00000010522)	MPZL2 (ENSODEG00000008668)	CD3E (ENSODEG00000011105)	CD3D (ENSODEG00000008502)	CD3G (ENSODEG00000008512)	ENSODEG00000009407	UBE4A (ENSODEG00000007578)	ENSODEG00000008388 #19	KMT2A (ENSODEG00000010867) #22	TTC36 (ENSODEG00000007448) #24	TMEM25 (ENSODEG00000009164) #25	IFT46 (ENSODEG00000009156)	ARCN1 (ENSODEG00000008811)	ENSODEG00000008503	ENSODEG00000009600	TREH (ENSODEG00000008508)	DDX6 (ENSODEG00000007950)	ENSODEG00000019480	ENSODEG00000019496	ENSODEG00000019541	ENSODEG00000019466	ENSODEG00000019472	CXCR5 (ENSODEG00000009623)	BCL9L (ENSODEG00000008521)
Guinea pig	MODERN SPECIES	19	FXYD6 (ENSCPOG00000035059)	TMPRSS13 (ENSCPOG00000011938)	IL10RA (ENSCPOG00000030865)	SMIM35 (ENSCPOG00000037236)	TMPRSS4 (ENSCPOG00000005899)	SCN4B (ENSCPOG00000003831)	SCN2B (ENSCPOG00000034956)	ENSCPOG00000010118	MPZL3 (ENSCPOG00000039523)	ENSCPOG00000036539	CD3E (ENSCPOG00000001430)	CD3D (ENSCPOG00000013163)	CD3G (ENSCPOG00000022675)	UBE4A (ENSCPOG00000013164)	ENSCPOG00000038525 #19	KMT2A (ENSCPOG00000005813) #22	TTC36 (ENSCPOG00000023702) #24	TMEM25 (ENSCPOG00000031708) #25	IFT46 (ENSCPOG00000006279)	ARCN1 (ENSCPOG00000023815)	PHLDB1 (ENSCPOG00000006424)	TREH (ENSCPOG00000005437)	DDX6 (ENSCPOG00000010587)	CXCR5 (ENSCPOG00000039191)	BCL9L (ENSCPOG00000009787)	UPK2 (ENSCPOG00000002222)	ENSCPOG00000001855	CENATAC (ENSCPOG00000013290)	ENSCPOG00000013298	TRAPPC4 (ENSCPOG00000013301)	SLC37A4 (ENSCPOG00000035396)
Naked mole-rat female	MODERN SPECIES	24	TMPRSS13 (ENSHGLG00000019043)	IL10RA (ENSHGLG00000038872)	SMIM35 (ENSHGLG00000017558)	TMPRSS4 (ENSHGLG00000017567)	SCN4B (ENSHGLG00000050753)	SCN2B (ENSHGLG00000033638)	ENSHGLG00000017992	ENSHGLG00000049594	MPZL3 (ENSHGLG00000018484)	ENSHGLG00000018497	CD3E (ENSHGLG00000018122)	CD3G (ENSHGLG00000017797)	UBE4A (ENSHGLG00000017823)	CD3D (ENSHGLG00000017785)	ENSHGLG00000013545 #19	KMT2A (ENSHGLG00000013811) #22	ENSHGLG00000032294	TTC36 (ENSHGLG00000042848) #24	TMEM25 (ENSHGLG00000017842) #25	IFT46 (ENSHGLG00000017283)	ARCN1 (ENSHGLG00000039336)	PHLDB1 (ENSHGLG00000004051)	ENSHGLG00000049202	TREH (ENSHGLG00000004167)	ENSHGLG00000036948	ENSHGLG00000004248	DDX6 (ENSHGLG00000004316)	ENSHGLG00000048072	CXCR5 (ENSHGLG00000034839)	BCL9L (ENSHGLG00000004416)	ENSHGLG00000038118
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207.d	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Marmotini	ANCESTRAL SPECIES	20	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207.d	ENSGT00940000155231.b.w	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00900000143762	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B
Marmotini_b	ANCESTRAL SPECIES	43	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207.d	ENSGT00940000155231.b.w	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Arctic ground squirrel	MODERN SPECIES	170	ENSUPAG00010006193	TMPRSS13 (ENSUPAG00010006212)	IL10RA (ENSUPAG00010006230)	SMIM35 (ENSUPAG00010006235)	TMPRSS4 (ENSUPAG00010006241)	ENSUPAG00010006265	SCN2B (ENSUPAG00010006281)	ENSUPAG00010006294	MPZL3 (ENSUPAG00010006306)	MPZL2 (ENSUPAG00010006315)	CD3E (ENSUPAG00010006321)	CD3D (ENSUPAG00010006334)	CD3G (ENSUPAG00010006342)	UBE4A (ENSUPAG00010006348)	ENSUPAG00010006390 #19	KMT2A (ENSUPAG00010006395) #22	TTC36 (ENSUPAG00010006459) #24	TMEM25 (ENSUPAG00010006469) #25	IFT46 (ENSUPAG00010006481)	ARCN1 (ENSUPAG00010006510)	PHLDB1 (ENSUPAG00010006520)	TREH (ENSUPAG00010006722)	DDX6 (ENSUPAG00010006792)	CXCR5 (ENSUPAG00010006813)	BCL9L (ENSUPAG00010006821)	UPK2 (ENSUPAG00010006857)	ENSUPAG00010006869	FOXR1 (ENSUPAG00010006881)	CENATAC (ENSUPAG00010006898)	RPS25 (ENSUPAG00010006950)	TRAPPC4 (ENSUPAG00010006976)
Squirrel	MODERN SPECIES	142	RNF214 (ENSSTOG00000026444)	BACE1 (ENSSTOG00000020402)	CEP164 (ENSSTOG00000011380)	DSCAML1 (ENSSTOG00000011396)	FXYD2 (ENSSTOG00000028766)	FXYD6 (ENSSTOG00000023242)	TMPRSS13 (ENSSTOG00000007794)	IL10RA (ENSSTOG00000007838)	SMIM35 (ENSSTOG00000024897)	TMPRSS4 (ENSSTOG00000003485)	SCN4B (ENSSTOG00000028585)	SCN2B (ENSSTOG00000021064)	ENSSTOG00000015407	MPZL3 (ENSSTOG00000015410)	MPZL2 (ENSSTOG00000014520)	KMT2A (ENSSTOG00000014405) #22	CD3D (ENSSTOG00000024175)	ENSSTOG00000014400 #19	TTC36 (ENSSTOG00000026783) #24	TMEM25 (ENSSTOG00000014432) #25	IFT46 (ENSSTOG00000014435)	ARCN1 (ENSSTOG00000014445)	ENSSTOG00000025149	ENSSTOG00000014454	TREH (ENSSTOG00000014466)	DDX6 (ENSSTOG00000014475)	CXCR5 (ENSSTOG00000025389)	BCL9L (ENSSTOG00000021546)	UPK2 (ENSSTOG00000014318)	FOXR1 (ENSSTOG00000014321)	CENATAC (ENSSTOG00000014325)
Alpin marmot	MODERN SPECIES	25	FXYD2 (ENSMMMG00000022796)	FXYD6 (ENSMMMG00000022790)	TMPRSS13 (ENSMMMG00000022786)	IL10RA (ENSMMMG00000022779)	SMIM35 (ENSMMMG00000022777)	TMPRSS4 (ENSMMMG00000022771)	SCN4B (ENSMMMG00000022769)	SCN2B (ENSMMMG00000022768)	ENSMMMG00000022766	MPZL3 (ENSMMMG00000022765)	MPZL2 (ENSMMMG00000022759)	CD3E (ENSMMMG00000022757)	CD3D (ENSMMMG00000022754)	UBE4A (ENSMMMG00000022744)	ENSMMMG00000022738 #19	KMT2A (ENSMMMG00000022724) #22	TTC36 (ENSMMMG00000022722) #24	TMEM25 (ENSMMMG00000022718) #25	IFT46 (ENSMMMG00000022714)	ARCN1 (ENSMMMG00000022711)	PHLDB1 (ENSMMMG00000022601)	TREH (ENSMMMG00000022593)	DDX6 (ENSMMMG00000022580)	CXCR5 (ENSMMMG00000022572)	BCL9L (ENSMMMG00000022559)	ENSMMMG00000022558	UPK2 (ENSMMMG00000022555)	FOXR1 (ENSMMMG00000022553)	CENATAC (ENSMMMG00000022547)	ENSMMMG00000022541	ENSMMMG00000022537
Eurasian red squirrel	MODERN SPECIES	2	TMPRSS13 (ENSSVLG00005023759)	IL10RA (ENSSVLG00005023826)	SMIM35 (ENSSVLG00005023865)	TMPRSS4 (ENSSVLG00005023934)	SCN4B (ENSSVLG00005024198)	SCN2B (ENSSVLG00005024230)	JAML (ENSSVLG00005024261)	MPZL3 (ENSSVLG00005024358)	MPZL2 (ENSSVLG00005024417)	ENSSVLG00005024441	ENSSVLG00005024461	CD3D (ENSSVLG00005024525)	CD3G (ENSSVLG00005024593)	UBE4A (ENSSVLG00005024644)	ENSSVLG00005024683 #19	KMT2A (ENSSVLG00005024766) #22	TTC36 (ENSSVLG00005024881) #24	TMEM25 (ENSSVLG00005012879) #25	IFT46 (ENSSVLG00005012985)	ARCN1 (ENSSVLG00005013104)	PHLDB1 (ENSSVLG00005013481)	TREH (ENSSVLG00005013828)	DDX6 (ENSSVLG00005014076)	CXCR5 (ENSSVLG00005014130)	BCL9L (ENSSVLG00005014178)	UPK2 (ENSSVLG00005014262)	FOXR1 (ENSSVLG00005014333)	ENSSVLG00005014434	ENSSVLG00005014518	SLC37A4 (ENSSVLG00005014603)	HYOU1 (ENSSVLG00005014785)
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a	ENSGT00940000153312.B	ENSGT00940000153312.A.a.a	ENSGT00940000153312.A.a.b	ENSGT00390000009300.b	ENSGT00390000009724.l #19	ENSGT00940000160099 #22	ENSGT00390000007968 #24	ENSGT01080000257333.B #25	ENSGT00390000005544	ENSGT00390000017207	ENSGT00940000155231.b	ENSGT00390000006949	ENSGT00900000141067	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a	ENSGT00390000006115	ENSGT00940000162579	ENSGT00390000007799	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B	ENSGT00730000111086
Pika	MODERN SPECIES	533																ENSOPRG00000011275 #22	TTC36 (ENSOPRG00000011339) #24	TMEM25 (ENSOPRG00000011356) #25	ENSOPRG00000011378