Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000161795 #33 ENSGT00940000162763 #32 ENSGT00950000182835.c.c #31 ENSGT00530000063540.a #30 ENSGT00940000159912 #29 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a #28 ENSGT00940000161062 #27 ENSGT00940000162603 #26 ENSGT00940000163673 ENSGT00390000004891 #25 ENSGT00950000182925.D.a.a.b.b ##21 ENSGT00950000182925.D.a.b.a.a.b #23 ENSGT00940000162502 #22 ENSGT00940000163246 ENSGT00940000162988 ENSGT00950000182925.D.a.b.a.b #21 ENSGT00940000154103.b #20 ENSGT00530000063529.B #18 ENSGT00940000153902.b #19 ENSGT00940000162717 ENSGT00940000153664.A.b.a ENSGT00390000018389 #16 ENSGT00940000159316 #15 ENSGT00390000014785 #14 ENSGT01090000260082.d.a.a.a.a #13 ENSGT00390000001432 #12 ENSGT00940000163549 ENSGT00940000158517 #11 Glires ANCESTRAL SPECIES 10 ENSGT00940000161795 #33 ENSGT00940000162763 #32 ENSGT00950000182835.c.c #31 ENSGT00530000063540.a #30 ENSGT00940000159912 #29 ENSGT00940000163664 ENSGT00840000130063 ENSGT00940000162993 ENSGT00950000183031.B.e.a #28 ENSGT00940000161062 #27 ENSGT00940000162603 #26 ENSGT00940000163673 ENSGT00390000004891 #25 ENSGT00950000182925.D.a.a.b.b ##21 ENSGT00950000182925.D.a.b.a.a.b #23 ENSGT00940000162502 #22 ENSGT00940000163246 ENSGT00950000182925.D.a.b.a.b #21 ENSGT00940000154103.b #20 ENSGT00530000063529.B #18 ENSGT00940000153902.b #19 ENSGT00940000162717 ENSGT00940000153664.A.b.a ENSGT00390000018389 #16 ENSGT00940000159316 #15 ENSGT00390000014785 #14 ENSGT00940000166548 ENSGT01090000260082.d.a.a.a.a #13 ENSGT00390000001432 #12 ENSGT00940000163549 ENSGT00940000158517 #11 Rodentia ANCESTRAL SPECIES 128 ENSGT00940000162502 #22 ENSGT00940000163246 Rodentia_A ANCESTRAL SPECIES 146 ENSGT00940000162502 #22 ENSGT00940000163246 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000153259.a.a.a #8 ENSGT00940000154336.c.a #9 ENSGT00940000158517 #11 ENSGT00940000163549 ENSGT00390000001432 #12 ENSGT01090000260082.d.a.a.a.a #13 ENSGT00390000014785 #14 ENSGT00940000159316 #15 ENSGT00390000018389 #16 ENSGT00940000153664.A.b.a ENSGT00940000153902.b #19 ENSGT00530000063529.B #18 ENSGT00940000154103.b #20 ENSGT00950000182925.D.a.b.a.b #21 ENSGT00940000162988 ENSGT00940000162502 #22 ENSGT00950000182925.D.a.b.a.a.b #23 ENSGT00390000004891 #25 ENSGT00940000162603 #26 ENSGT00940000161062 #27 ENSGT00950000183031.B.e.a #28 ENSGT00940000159912 #29 ENSGT00530000063540.a #30 ENSGT00950000182835.c.c #31 ENSGT00940000162763 #32 ENSGT00940000161795 #33 ENSGT00940000155877 #34 ENSGT00940000159438 #35 ENSGT00390000012692 #36 ENSGT00940000160145.b ENSGT00530000063168.a.a.b Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00940000153259.a.a.a #8 ENSGT00940000154336.c.a #9 ENSGT00940000158517 #11 ENSGT00940000163549 ENSGT00390000001432 #12 ENSGT01090000260082.d.a.a.a.a #13 ENSGT00390000014785 #14 ENSGT00940000159316 #15 ENSGT00390000018389 #16 ENSGT00940000153664.A.b.a ENSGT00530000063529.B #18 ENSGT00940000153902.b #19 ENSGT00940000154103.b #20 ENSGT00950000182925.D.a.b.a.b #21 ENSGT00940000162988 ENSGT00940000162502 #22 ENSGT00950000182925.D.a.b.a.a.b #23 ENSGT00390000004891 #25 ENSGT00940000162603 #26 ENSGT00940000161062 #27 ENSGT00950000183031.B.e.a #28 ENSGT00940000159912 #29 ENSGT00530000063540.a #30 ENSGT00950000182835.c.c #31 ENSGT00940000162763 #32 ENSGT00940000161795 #33 ENSGT00940000155877 #34 ENSGT00940000159438 #35 ENSGT00390000012692 #36 ENSGT00940000160145.b ENSGT00530000063168.a.a.b Hystricomorpha_b ANCESTRAL SPECIES 74 ENSGT00390000012078.b ENSGT00940000156229 ENSGT00940000153259.a.a.a #8 ENSGT00940000154336.c.a #9 ENSGT00940000158517 #11 ENSGT00390000001432 #12 ENSGT01090000260082.d.a.a.a.a #13 ENSGT00390000014785 #14 ENSGT00940000159316 #15 ENSGT00390000018389 #16 ENSGT00530000063529.B #18 ENSGT00940000153902.b #19 ENSGT00940000154103.b #20 ENSGT00950000182925.D.a.b.a.b #21 ENSGT00940000162988 ENSGT00940000162502 #22 ENSGT00950000182925.D.a.b.a.a.b #23 ENSGT00390000004891 #25 ENSGT00940000162603 #26 ENSGT00940000161062 #27 ENSGT00950000183031.B.e.a #28 ENSGT00940000159912 #29 ENSGT00530000063540.a #30 ENSGT00950000182835.c.c #31 ENSGT00940000162763 #32 ENSGT00940000161795 #33 ENSGT00940000155877 #34 ENSGT00940000159438 #35 ENSGT00390000012692 #36 ENSGT00540000070023.c.a.a ENSGT00940000160145.b Long-tailed chinchilla MODERN SPECIES 182 AR (ENSCLAG00000009155) #7 EDA2R (ENSCLAG00000008498) #8 ENSCLAG00000005489 #9 ENSCLAG00000004929 #10 HEPH (ENSCLAG00000004016) #11 VSIG4 (ENSCLAG00000003308) #12 MSN (ENSCLAG00000008770) #13 LAS1L (ENSCLAG00000006717) #14 ZC3H12B (ENSCLAG00000003600) #15 ZC4H2 (ENSCLAG00000002934) #16 ENSCLAG00000007927 #17 AMER1 (ENSCLAG00000017657) #18 ASB12 (ENSCLAG00000006178) #19 ARHGEF9 (ENSCLAG00000004407) #20 SPIN4 (ENSCLAG00000017570) #21 FAAH2 (ENSCLAG00000003768) #22 ENSCLAG00000003441 #23 ENSCLAG00000003312 #24 NBDY (ENSCLAG00000017820) #25 UBQLN2 (ENSCLAG00000017708) #26 KLF8 (ENSCLAG00000005236) #27 RRAGB (ENSCLAG00000003913) #28 ALAS2 (ENSCLAG00000003042) #29 APEX2 (ENSCLAG00000017315) #30 PFKFB1 (ENSCLAG00000009234) #31 ENSCLAG00000007306 #32 MAGED2 (ENSCLAG00000007195) #33 GNL3L (ENSCLAG00000003823) #34 FGD1 (ENSCLAG00000002961) #35 TSR2 (ENSCLAG00000007235) #36 ENSCLAG00000007014 #37 Degu MODERN SPECIES 252 MSN (ENSODEG00000003097) #13 ENSODEG00000003056 LAS1L (ENSODEG00000003001) #14 ENSODEG00000002977 ENSODEG00000018885 ENSODEG00000002966 ZC4H2 (ENSODEG00000002954) #16 ENSODEG00000018865 ASB12 (ENSODEG00000002937) #19 ENSODEG00000002930 ENSODEG00000002920 ARHGEF9 (ENSODEG00000002707) #20 SPIN4 (ENSODEG00000018809) #21 ENSODEG00000002601 ENSODEG00000002584 FAAH2 (ENSODEG00000002562) #22 ENSODEG00000004091 #23 UBQLN2 (ENSODEG00000004078) #26 ENSODEG00000004065 ENSODEG00000019014 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000002770 #14 ENSHGLG00000044476 #14 ENSHGLG00000003107 #15 ENSHGLG00000020196 ENSHGLG00000037523 ENSHGLG00000046360 ENSHGLG00000042114 ENSHGLG00000005578 #16 ENSHGLG00000019822 ASB12 (ENSHGLG00000000583) #19 AMER1 (ENSHGLG00000020357) #18 ENSHGLG00000043636 ARHGEF9 (ENSHGLG00000002050) #20 SPIN4 (ENSHGLG00000034676) #21 ENSHGLG00000045579 ENSHGLG00000001021 #22 ENSHGLG00000000991 #23 ENSHGLG00000050802 #23 NBDY (ENSHGLG00000049275) #25 ENSHGLG00000000962 UBQLN2 (ENSHGLG00000020145) #26 ENSHGLG00000037038 ENSHGLG00000000922 #27 ENSHGLG00000040831 RRAGB (ENSHGLG00000000313) #28 ALAS2 (ENSHGLG00000000286) #29 ENSHGLG00000000297 APEX2 (ENSHGLG00000042453) #30 Pfkfb1 (ENSHGLG00000000258) #31 Tro (ENSHGLG00000000236) #32 ENSHGLG00000000204 #33 Sciuridae ANCESTRAL SPECIES 28 ENSGT00940000162502 #22 ENSGT00940000163246 ENSGT00950000182925.D.a.b.a.a.a.b ##21 ENSGT00390000004891 #25 ENSGT00940000163673 ENSGT00940000162603 #26 ENSGT00940000161062 #27 ENSGT00950000183031.B.e.a #28 ENSGT00940000162993 ENSGT00840000130063.f ENSGT00940000163664 ENSGT00840000130063.e ENSGT00510000049526 ENSGT00390000001055 ENSGT00940000159912 #29 ENSGT00530000063540.a #30 Marmotini ANCESTRAL SPECIES 122 ENSGT00940000162502 #22 ENSGT00940000163246 ENSGT00950000182925.D.a.b.a.a.a.b ##21 ENSGT00390000004891 #25 ENSGT00940000163673 ENSGT00940000162603 #26 ENSGT00940000161062 #27 ENSGT00950000183031.B.e.a #28 ENSGT00840000130063.f ENSGT00940000163664 ENSGT00840000130063.e Marmotini_b ANCESTRAL SPECIES ENSGT00940000162502 #22 Squirrel MODERN SPECIES 555 ENSSTOG00000021364 FAAH2 (ENSSTOG00000021853) #22 Alpin marmot MODERN SPECIES 125 FAAH2 (ENSMMMG00000019310) #22 ENSMMMG00000019316 ENSMMMG00000019326 ENSMMMG00000019329 ENSMMMG00000019346 #23 ENSMMMG00000019350 ENSMMMG00000019353 ##21 NBDY (ENSMMMG00000019364) #25 ENSMMMG00000019368 UBQLN2 (ENSMMMG00000019375) #26 KLF8 (ENSMMMG00000019380) #27 ENSMMMG00000019394 RRAGB (ENSMMMG00000019400) #28 ENSMMMG00000019417 ENSMMMG00000019420 ENSMMMG00000019425 Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005021257 ARHGEF9 (ENSSVLG00005021404) #20 SPIN4 (ENSSVLG00005021964) #21 ENSSVLG00005021975 ENSSVLG00005021992 ENSSVLG00005022009 ENSSVLG00005022025 ENSSVLG00005022061 ENSSVLG00005022080 ENSSVLG00005022130 ENSSVLG00005022167 ENSSVLG00005022204 ENSSVLG00005022247 ENSSVLG00005022267 ENSSVLG00005022283 FAAH2 (ENSSVLG00005022317) #22 ENSSVLG00005022388 ENSSVLG00005022418 ENSSVLG00005022467 #23 ENSSVLG00005022504 #23 NBDY (ENSSVLG00005022535) #25 ENSSVLG00005022555 ENSSVLG00005022569 ENSSVLG00005022602 ENSSVLG00005022614 UBQLN2 (ENSSVLG00005022640) #26 KLF8 (ENSSVLG00005022667) #27 ENSSVLG00005022786 RRAGB (ENSSVLG00005022820) #28 FOXR2 (ENSSVLG00005022885) ENSSVLG00005022899 Lagomorpha ANCESTRAL SPECIES 40 ENSGT00940000160145.b ENSGT00530000063168.a.a.b ENSGT00940000157847 ENSGT00940000162763 #32 ENSGT00950000182835.c.c #31 ENSGT00940000159912 #29 ENSGT00940000163664 ENSGT00840000130063 ENSGT00950000183031.B.e.a #28 ENSGT00940000161062 #27 ENSGT00940000162603 #26 ENSGT00940000163673 ENSGT00390000004891 #25 ENSGT00950000182925.D.a.a.b.b ##21 ENSGT00950000182925.D.a.b.a.a.b #23 ENSGT00940000162502 #22 ENSGT00940000162988 ENSGT00940000166157 ENSGT00950000182925.D.a.b.a.b #21 ENSGT00940000164144 ENSGT00970000194118 ENSGT00940000154103.b #20 ENSGT00530000063529.B #18 ENSGT00940000153902.b #19 ENSGT00940000162717 ENSGT00940000153664.A.b.a ENSGT00390000018389 #16 ENSGT00940000159316 #15 ENSGT00390000014785 #14 ENSGT00940000166548 ENSGT01090000260082.d.a.a.a.a #13 Rabbit MODERN SPECIES 1401 TRO (ENSOCUG00000001711) #32 PFKFB1 (ENSOCUG00000001716) #31 ALAS2 (ENSOCUG00000013603) #29 ENSOCUG00000033823 USP51 (ENSOCUG00000022810) MAGEH1 (ENSOCUG00000011207) RRAGB (ENSOCUG00000008666) #28 KLF8 (ENSOCUG00000005068) #27 UBQLN2 (ENSOCUG00000025886) #26 ENSOCUG00000005727 ENSOCUG00000008428 ENSOCUG00000004874 ENSOCUG00000039678 #25 ENSOCUG00000009671 ##21 ENSOCUG00000026457 #23 FAAH2 (ENSOCUG00000029015) #22 ENSOCUG00000032805 ENSOCUG00000003505 ENSOCUG00000022866 SPIN4 (ENSOCUG00000017930) #21 ENSOCUG00000029401 ENSOCUG00000031797 ENSOCUG00000027796 ENSOCUG00000011267 #20 ENSOCUG00000030864 AMER1 (ENSOCUG00000001613) #18 ASB12 (ENSOCUG00000023698) #19 MTMR8 (ENSOCUG00000001617) ENSOCUG00000023259 ENSOCUG00000029232 ZC4H2 (ENSOCUG00000013393) #16