Euteleostomi	ANCESTRAL SPECIES	175									ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815 #26	ENSGT00940000167421	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00390000003267	ENSGT00940000155330	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
Sarcopterygii	ANCESTRAL SPECIES	253									ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815 #26	ENSGT00940000167421	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00390000003267	ENSGT00390000006465 #28
Tetrapoda	ANCESTRAL SPECIES	184									ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT00390000006465 #28
Amniota	ANCESTRAL SPECIES	7	ENSGT00940000157026	ENSGT00910000148338	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926	ENSGT00940000158548
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000157026	ENSGT00910000148338	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000163571	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT01080000257342.H	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926
Theria	ANCESTRAL SPECIES		ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000163571	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000162829	ENSGT00940000161932	ENSGT00390000005082	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
Eutheria	ANCESTRAL SPECIES	46													ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00390000016274
Boreoeutheria	ANCESTRAL SPECIES	24	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Euarchontoglires	ANCESTRAL SPECIES	25	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000163486	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Primates	ANCESTRAL SPECIES	30	ENSGT01090000260018.C.b.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Haplorrhini	ANCESTRAL SPECIES	46	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.a	ENSGT01090000260086.E.b #8	ENSGT00940000162666 #9	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35
Simiiformes	ANCESTRAL SPECIES	33	ENSGT00940000162666 #9	ENSGT01050000244828.c.a.a.a	ENSGT01050000244828.c.b.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00910000148176	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35
Platyrrhini	ANCESTRAL SPECIES	55	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00730000111648	ENSGT01090000259995.b.b.a.a.a	ENSGT00940000162246 #7	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00910000148176	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Cebidae	ANCESTRAL SPECIES	23	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00730000111648	ENSGT01090000259995.b.b.a.a.a	ENSGT00940000162246 #7	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35
Marmoset	MODERN SPECIES	10	TRIM58 (ENSCJAG00000008884) #7	OR6F1 (ENSCJAG00000022632) #8	OR13G1 (ENSCJAG00000022631) #9	GCSAML (ENSCJAG00000043513) #10	OR2B11 (ENSCJAG00000075428) #11	NLRP3 (ENSCJAG00000011813) #12	ZNF496 (ENSCJAG00000011781) #13	ENSCJAG00000066453 #14	ENSCJAG00000082577 #15	ZNF124 (ENSCJAG00000011765) #16	ZNF670 (ENSCJAG00000011738) #17	ZNF669 (ENSCJAG00000048657) #18	JMJD4 (ENSCJAG00000011727) #19	SNAP47 (ENSCJAG00000039821) #20	WNT9A (ENSCJAG00000080517) #21	WNT3A (ENSCJAG00000016650) #22	ARF1 (ENSCJAG00000041786) #23	C1orf35 (ENSCJAG00000016721) #24	MRPL55 (ENSCJAG00000016730) #25	ENSCJAG00000016738 #26	GJC2 (ENSCJAG00000016746) #27	IBA57 (ENSCJAG00000016749) #28	OBSCN (ENSCJAG00000054288) #29	TRIM11 (ENSCJAG00000016757) #30	TRIM17 (ENSCJAG00000016765) #31	H2AC25 (ENSCJAG00000083637) #32	H2BC26 (ENSCJAG00000077602) #33	ENSCJAG00000071519 #34	RNF187 (ENSCJAG00000016779) #35	ENSCJAG00000059253 #36	ENSCJAG00000082135 #37
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000161175	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT01090000260018.C.b.a.a	ENSGT00940000162246 #7	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35
Capuchin	MODERN SPECIES	75								ZNF124 (ENSCCAG00000026559) #16	ZNF670 (ENSCCAG00000027449) #17	ENSCCAG00000031402	ENSCCAG00000021671	JMJD4 (ENSCCAG00000035807) #19	SNAP47 (ENSCCAG00000027134) #20	PRSS38 (ENSCCAG00000020907)	WNT9A (ENSCCAG00000030978) #21	WNT3A (ENSCCAG00000009359) #22	ENSCCAG00000023374 #23	C1orf35 (ENSCCAG00000020266) #24	MRPL55 (ENSCCAG00000031724) #25	GUK1 (ENSCCAG00000035707) #26	GJC2 (ENSCCAG00000020287) #27	IBA57 (ENSCCAG00000019844) #28	ENSCCAG00000023630	OBSCN (ENSCCAG00000032571) #29	ENSCCAG00000016195	TRIM11 (ENSCCAG00000036943) #30	TRIM17 (ENSCCAG00000025121) #31	ENSCCAG00000036407	H2AW (ENSCCAG00000012315) #32	H2BU1 (ENSCCAG00000015023) #33	ENSCCAG00000012567 #34
Bolivian squirrel monkey	MODERN SPECIES	114	ZNF672 (ENSSBOG00000026394)	SH3BP5L (ENSSBOG00000019553)	LYPD8 (ENSSBOG00000032248)	ENSSBOG00000026393	TRIM58 (ENSSBOG00000024282) #7	GCSAML (ENSSBOG00000033373) #10	OR2C3 (ENSSBOG00000028292)	OR2B11 (ENSSBOG00000031196) #11	NLRP3 (ENSSBOG00000030084) #12	ZNF496 (ENSSBOG00000005783) #13	ENSSBOG00000021324	JMJD4 (ENSSBOG00000026344) #19	ENSSBOG00000025438 #20	PRSS38 (ENSSBOG00000025229)	WNT9A (ENSSBOG00000025218) #21	WNT3A (ENSSBOG00000020846) #22	ENSSBOG00000030557 ##23	C1orf35 (ENSSBOG00000023673) #24	MRPL55 (ENSSBOG00000035388) #25	GUK1 (ENSSBOG00000026897) #26	IBA57 (ENSSBOG00000022497) #28	OBSCN (ENSSBOG00000032380) #29	TRIM11 (ENSSBOG00000005125) #30	TRIM17 (ENSSBOG00000030344) #31	H2AC25 (ENSSBOG00000019953) #32	H2BC26 (ENSSBOG00000008375) #33	ENSSBOG00000019925 #34	AHCTF1 (ENSSBOG00000004404)	SCCPDH (ENSSBOG00000021995)	CNST (ENSSBOG00000028424)	TFB2M (ENSSBOG00000033950)
Mas night monkey	MODERN SPECIES	1116	ENSANAG00000009700	ENSANAG00000025502	TRIM58 (ENSANAG00000028275) #7	OR1C1 (ENSANAG00000026494)	GCSAML (ENSANAG00000030297) #10	OR2C3 (ENSANAG00000035800)	NLRP3 (ENSANAG00000030863) #12	ZNF496 (ENSANAG00000022228) #13	ZNF124 (ENSANAG00000029658) #16	ZNF670 (ENSANAG00000033492) #17	ZNF669 (ENSANAG00000013317) #18	ENSANAG00000022916	JMJD4 (ENSANAG00000028105) #19	SNAP47 (ENSANAG00000035151) #20	WNT9A (ENSANAG00000032624) #21	WNT3A (ENSANAG00000021377) #22	ENSANAG00000036021 #23	C1orf35 (ENSANAG00000020714) #24	MRPL55 (ENSANAG00000036592) #25	GUK1 (ENSANAG00000027172) #26	IBA57 (ENSANAG00000022164) #28	ENSANAG00000029250	OBSCN (ENSANAG00000024031) #29	TRIM11 (ENSANAG00000034240) #30	ENSANAG00000028749 #31	ENSANAG00000022375	H2AC25 (ENSANAG00000031714) #32	H2BC26 (ENSANAG00000010772) #33	ENSANAG00000031738 #34	ENSANAG00000026087
Catarrhini	ANCESTRAL SPECIES	10	ENSGT01100000263504.a.b.a.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00910000148176	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000157177.i.b	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00940000154251.A.a.a.a ##15	ENSGT00910000147389	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Hominidae	ANCESTRAL SPECIES	6	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000157177.i.b	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00940000154251.A.a.a.a ##15	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000157177.i.b	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00940000154251.A.a.a.a ##15	ENSGT00940000159380 #19	ENSGT00910000147389	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000157177.i.b	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00940000154251.A.a.a.a ##15	ENSGT00940000159380 #19	ENSGT00910000147389	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Pan	ANCESTRAL SPECIES		ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000157177.i.b	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00940000154251.A.a.a.a ##15	ENSGT00940000159380 #19	ENSGT00910000147389	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Chimpanzee	MODERN SPECIES		MIXL1 (ENSPTRG00000049290)	LIN9 (ENSPTRG00000002048)	PARP1 (ENSPTRG00000002049)	ENSPTRG00000043266	STUM (ENSPTRG00000030135)	ITPKB (ENSPTRG00000002051)	PSEN2 (ENSPTRG00000002052)	COQ8A (ENSPTRG00000033741)	CDC42BPA (ENSPTRG00000042934)	ZNF678 (ENSPTRG00000002057) ##15	JMJD4 (ENSPTRG00000002059) #19	ENSPTRG00000048948	SNAP47 (ENSPTRG00000002060) #20	PRSS38 (ENSPTRG00000002061)	WNT9A (ENSPTRG00000002062) #21	WNT3A (ENSPTRG00000002064) #22	ENSPTRG00000046943	ARF1 (ENSPTRG00000002066) #23	C1H1orf35 (ENSPTRG00000002067) #24	MRPL55 (ENSPTRG00000002068) #25	ENSPTRG00000051540	GUK1 (ENSPTRG00000002069) #26	GJC2 (ENSPTRG00000002070) #27	IBA57 (ENSPTRG00000002072) #28	ENSPTRG00000002073	OBSCN (ENSPTRG00000046375) #29	TRIM11 (ENSPTRG00000002071) #30	TRIM17 (ENSPTRG00000002076) #31	H3-4 (ENSPTRG00000052362)	H2AC25 (ENSPTRG00000047640) #32	H2BC26 (ENSPTRG00000050958) #33
Bonobo	MODERN SPECIES		LIN9 (ENSPPAG00000029947)	PARP1 (ENSPPAG00000040862)	ENSPPAG00000035608	ENSPPAG00000026314	ITPKB (ENSPPAG00000034181)	PSEN2 (ENSPPAG00000029453)	COQ8A (ENSPPAG00000038783)	CDC42BPA (ENSPPAG00000030700)	ENSPPAG00000042857	ENSPPAG00000042694	JMJD4 (ENSPPAG00000041921) #19	ENSPPAG00000043934	SNAP47 (ENSPPAG00000030087) #20	PRSS38 (ENSPPAG00000029608)	WNT9A (ENSPPAG00000040433) #21	WNT3A (ENSPPAG00000033514) #22	ENSPPAG00000003062	ARF1 (ENSPPAG00000029612) #23	ENSPPAG00000031412 #24	ENSPPAG00000030545 #25	ENSPPAG00000030143	ENSPPAG00000031110 #26	ENSPPAG00000034125 #28	ENSPPAG00000037707	OBSCN (ENSPPAG00000039604) #29	TRIM11 (ENSPPAG00000018913) #30	TRIM17 (ENSPPAG00000018691) #31	H3-4 (ENSPPAG00000020018)	H2AC25 (ENSPPAG00000013459) #32	H2BC26 (ENSPPAG00000025721) #33	ENSPPAG00000001893 #34
Human	MODERN SPECIES		H3-3A (ENSG00000163041)	ACBD3 (ENSG00000182827)	MIXL1 (ENSG00000185155)	LIN9 (ENSG00000183814)	PARP1 (ENSG00000143799)	STUM (ENSG00000203685)	ITPKB (ENSG00000143772)	PSEN2 (ENSG00000143801)	COQ8A (ENSG00000163050)	CDC42BPA (ENSG00000143776)	ZNF678 (ENSG00000181450) ##15	SNAP47 (ENSG00000143740) #20	JMJD4 (ENSG00000081692) #19	PRSS38 (ENSG00000185888)	WNT9A (ENSG00000143816) #21	WNT3A (ENSG00000154342) #22	ARF1 (ENSG00000143761) #23	C1orf35 (ENSG00000143793) #24	MRPL55 (ENSG00000162910) #25	GUK1 (ENSG00000143774) #26	GJC2 (ENSG00000198835) #27	IBA57 (ENSG00000181873) #28	OBSCN (ENSG00000154358) #29	TRIM11 (ENSG00000154370) #30	TRIM17 (ENSG00000162931) #31	H3-4 (ENSG00000168148)	H2AC25 (ENSG00000181218) #32	H2BC26 (ENSG00000196890) #33	RNF187 (ENSG00000168159) #35	RHOU (ENSG00000116574)	RAB4A (ENSG00000168118)
Gorilla	MODERN SPECIES		LIN9 (ENSGGOG00000002125)	PARP1 (ENSGGOG00000006308)	ENSGGOG00000015658	ENSGGOG00000015112	PSEN2 (ENSGGOG00000003332)	COQ8A (ENSGGOG00000009596)	CDC42BPA (ENSGGOG00000009605)	ZNF678 (ENSGGOG00000042328) ##15	ENSGGOG00000041432	JMJD4 (ENSGGOG00000008441) #19	ENSGGOG00000037683	SNAP47 (ENSGGOG00000008442) #20	PRSS38 (ENSGGOG00000012849)	WNT9A (ENSGGOG00000004569) #21	ENSGGOG00000037788	WNT3A (ENSGGOG00000006562) #22	ENSGGOG00000023449	ARF1 (ENSGGOG00000011263) #23	C1orf35 (ENSGGOG00000015702) #24	ENSGGOG00000015709 #25	ENSGGOG00000039931	ENSGGOG00000013567 #26	ENSGGOG00000027354 #27	IBA57 (ENSGGOG00000013646) #28	ENSGGOG00000012820	ENSGGOG00000012717 #29	TRIM11 (ENSGGOG00000016890) #30	TRIM17 (ENSGGOG00000016899) #31	ENSGGOG00000027960	H2AC25 (ENSGGOG00000037094) #32	H2BC26 (ENSGGOG00000039267) #33
Orangutan	MODERN SPECIES		ENSPPYG00000032085	ACBD3 (ENSPPYG00000029541)	MIXL1 (ENSPPYG00000000166)	ENSPPYG00000000165	PARP1 (ENSPPYG00000000164)	STUM (ENSPPYG00000000162)	ITPKB (ENSPPYG00000000161)	PSEN2 (ENSPPYG00000000160)	COQ8A (ENSPPYG00000000159)	CDC42BPA (ENSPPYG00000000158)	ENSPPYG00000000155	JMJD4 (ENSPPYG00000000154) #19	SNAP47 (ENSPPYG00000000153) #20	PRSS38 (ENSPPYG00000000152)	WNT9A (ENSPPYG00000000151) #21	WNT3A (ENSPPYG00000000150) #22	ENSPPYG00000000149	ARF1 (ENSPPYG00000000148) #23	C1orf35 (ENSPPYG00000000147) #24	ENSPPYG00000000146 #25	ENSPPYG00000000145 #26	GJC2 (ENSPPYG00000000144) #27	IBA57 (ENSPPYG00000039751) #28	ENSPPYG00000000139 #29	ENSPPYG00000000138 #30	TRIM17 (ENSPPYG00000000137) #31	H3-4 (ENSPPYG00000000136)	H2AC25 (ENSPPYG00000030037) #32	H2BC26 (ENSPPYG00000039326) #33	ENSPPYG00000040985 #34	RNF187 (ENSPPYG00000041257) #35
Gibbon	MODERN SPECIES	20	MIXL1 (ENSNLEG00000032618)	LIN9 (ENSNLEG00000013837)	PARP1 (ENSNLEG00000013905)	ENSNLEG00000032044	ENSNLEG00000013913	ITPKB (ENSNLEG00000013915)	PSEN2 (ENSNLEG00000013924)	COQ8A (ENSNLEG00000013937)	CDC42BPA (ENSNLEG00000013980)	ZNF678 (ENSNLEG00000008917) ##15	ENSNLEG00000031801	JMJD4 (ENSNLEG00000032639) #19	SNAP47 (ENSNLEG00000014097) #20	PRSS38 (ENSNLEG00000014112)	WNT9A (ENSNLEG00000014116) #21	WNT3A (ENSNLEG00000014118) #22	ENSNLEG00000029254	ARF1 (ENSNLEG00000014137) #23	ENSNLEG00000033210 #24	ENSNLEG00000014215 #25	ENSNLEG00000014235 #26	IBA57 (ENSNLEG00000014263) #28	ENSNLEG00000033321	ENSNLEG00000014265 #29	TRIM11 (ENSNLEG00000014315) #30	TRIM17 (ENSNLEG00000014332) #31	H3-4 (ENSNLEG00000031785)	H2AC25 (ENSNLEG00000033352) #32	H2BC26 (ENSNLEG00000033656) #33	ENSNLEG00000029943 #34	RHOU (ENSNLEG00000027920)
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00910000148176	ENSGT00940000153165.a.a.d.i.a	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT01100000263504.a.b.b.a.b.c	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT01090000260030.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Vervet Monkey	MODERN SPECIES	17	SDE2 (ENSCSAG00000016332)	ACBD3 (ENSCSAG00000016340)	MIXL1 (ENSCSAG00000016345)	LIN9 (ENSCSAG00000016351)	PARP1 (ENSCSAG00000016354)	STUM (ENSCSAG00000016358)	ITPKB (ENSCSAG00000016366)	PSEN2 (ENSCSAG00000016372)	COQ8A (ENSCSAG00000016382)	CDC42BPA (ENSCSAG00000016402)	ENSCSAG00000016411	JMJD4 (ENSCSAG00000016420) #19	SNAP47 (ENSCSAG00000016423) #20	PRSS38 (ENSCSAG00000016434)	WNT9A (ENSCSAG00000016440) #21	WNT3A (ENSCSAG00000016455) #22	ARF1 (ENSCSAG00000016460) #23	C1orf35 (ENSCSAG00000016465) #24	MRPL55 (ENSCSAG00000016477) #25	GUK1 (ENSCSAG00000016494) #26	GJC2 (ENSCSAG00000000269) #27	IBA57 (ENSCSAG00000016503) #28	ENSCSAG00000000270	OBSCN (ENSCSAG00000016528) #29	TRIM11 (ENSCSAG00000016542) #30	TRIM17 (ENSCSAG00000016546) #31	H2AC25 (ENSCSAG00000000271) #32	H2BC26 (ENSCSAG00000000272) #33	ENSCSAG00000000273 #34	RNF187 (ENSCSAG00000016553) #35
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT01090000260030.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00910000148086	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A.vc #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Macaca	ANCESTRAL SPECIES		ENSGT00530000063651.a	ENSGT01030000238203	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT01090000260030.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00910000148086	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000017697.a.n	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A.vc #29	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183105.B.a.a.b	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000161627.a.b.a.a.b ##14	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT01090000260030.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.f	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000013340	ENSGT00940000154842.a.b	ENSGT00940000153464.A.b.a
Rhesus	MODERN SPECIES		ENSMMUG00000063956	MIXL1 (ENSMMUG00000005129)	LIN9 (ENSMMUG00000016014)	ENSMMUG00000050685 ##14	PARP1 (ENSMMUG00000021820)	STUM (ENSMMUG00000008640)	ITPKB (ENSMMUG00000061649)	PSEN2 (ENSMMUG00000018525)	COQ8A (ENSMMUG00000008636)	CDC42BPA (ENSMMUG00000008638)	ENSMMUG00000031497	JMJD4 (ENSMMUG00000053969) #19	SNAP47 (ENSMMUG00000001869) #20	PRSS38 (ENSMMUG00000060353)	WNT9A (ENSMMUG00000008338) #21	WNT3A (ENSMMUG00000050712) #22	ARF1 (ENSMMUG00000052432) #23	C1H1orf35 (ENSMMUG00000002791)	GUK1 (ENSMMUG00000023085) #26	GJC2 (ENSMMUG00000023086) #27	ENSMMUG00000057834 #28	TRIM11 (ENSMMUG00000005306) #30	TRIM17 (ENSMMUG00000005307) #31	H3-4 (ENSMMUG00000055227)	H2BC26 (ENSMMUG00000053022) #33	RNF187 (ENSMMUG00000048590) #35	HSD17B7 (ENSMMUG00000009332)	DDR2 (ENSMMUG00000009330)	UAP1 (ENSMMUG00000019514)	ENSMMUG00000063984	UHMK1 (ENSMMUG00000019513)
Crab-eating macaque	MODERN SPECIES		LIN9 (ENSMFAG00000001110)	ENSMFAG00000062286 ##14	PARP1 (ENSMFAG00000002526)	STUM (ENSMFAG00000035398)	ITPKB (ENSMFAG00000035876)	ENSMFAG00000053714	ENSMFAG00000054654	PSEN2 (ENSMFAG00000000107)	COQ8A (ENSMFAG00000045043)	CDC42BPA (ENSMFAG00000036131)	ENSMFAG00000038489	JMJD4 (ENSMFAG00000043012) #19	SNAP47 (ENSMFAG00000001190) #20	PRSS38 (ENSMFAG00000045626)	WNT9A (ENSMFAG00000062558) #21	WNT3A (ENSMFAG00000042689) #22	ENSMFAG00000034073 #23	C1orf35 (ENSMFAG00000045378) #24	MRPL55 (ENSMFAG00000064574) #25	GUK1 (ENSMFAG00000039838) #26	IBA57 (ENSMFAG00000002470) #28	ENSMFAG00000008386	TRIM11 (ENSMFAG00000042805) #30	TRIM17 (ENSMFAG00000001716) #31	ENSMFAG00000063754	ENSMFAG00000057302	H2BC26 (ENSMFAG00000049429) #33	RNF187 (ENSMFAG00000035159) #35	ENSMFAG00000062302	DDR2 (ENSMFAG00000036365)	UAP1 (ENSMFAG00000042529)
Pig-tailed macaque	MODERN SPECIES	288															WNT9A (ENSMNEG00000028905) #21	WNT3A (ENSMNEG00000037152) #22	ENSMNEG00000038219	ARF1 (ENSMNEG00000037278) #23	C1orf35 (ENSMNEG00000029724) #24	MRPL55 (ENSMNEG00000036387) #25	ENSMNEG00000035833	ENSMNEG00000028444 #26	GJC2 (ENSMNEG00000000224) #27	IBA57 (ENSMNEG00000037320) #28	ENSMNEG00000033684	OBSCN (ENSMNEG00000039875) #29	ENSMNEG00000022017	TRIM11 (ENSMNEG00000029145) #30	TRIM17 (ENSMNEG00000033783) #31	H3-4 (ENSMNEG00000018662)	H2AC25 (ENSMNEG00000011405) #32
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00910000148176	ENSGT00940000153165.a.a.d.i.a	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00910000148086	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000016274	ENSGT00940000154756.A.vc #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Olive baboon	MODERN SPECIES		LIN9 (ENSPANG00000007503)	PARP1 (ENSPANG00000011198)	ENSPANG00000041992	ENSPANG00000042335	ITPKB (ENSPANG00000014076)	ENSPANG00000040643	PSEN2 (ENSPANG00000015683)	COQ8A (ENSPANG00000005934)	CDC42BPA (ENSPANG00000007777)	ENSPANG00000048983	ENSPANG00000048924	JMJD4 (ENSPANG00000031507) #19	SNAP47 (ENSPANG00000017951) #20	PRSS38 (ENSPANG00000024006)	WNT9A (ENSPANG00000048565) #21	WNT3A (ENSPANG00000019711) #22	ENSPANG00000004523 #23	C1orf35 (ENSPANG00000009889) #24	MRPL55 (ENSPANG00000017717) #25	ENSPANG00000020945 #26	GJC2 (ENSPANG00000035104) #27	IBA57 (ENSPANG00000021033) #28	ENSPANG00000030630	ENSPANG00000035184 #29	TRIM11 (ENSPANG00000004478) #30	TRIM17 (ENSPANG00000014849) #31	H3-4 (ENSPANG00000032788)	H2AC25 (ENSPANG00000039633) #32	H2BC26 (ENSPANG00000042066) #33	ENSPANG00000050063 #34	HSD17B7 (ENSPANG00000026079)
Cercopithecinae_d	ANCESTRAL SPECIES	160								ENSGT00940000154251.A.a.a.a ##15	ENSGT00910000147389	ENSGT01090000260030.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00910000148086	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000016274	ENSGT00940000154756.A.vc #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33
Drill	MODERN SPECIES	1468										ZNF678 (ENSMLEG00000030111) ##15	ENSMLEG00000029152	JMJD4 (ENSMLEG00000038450) #19	SNAP47 (ENSMLEG00000028118) #20	PRSS38 (ENSMLEG00000031236)	WNT9A (ENSMLEG00000041830) #21	WNT3A (ENSMLEG00000034108) #22	ENSMLEG00000010724	ARF1 (ENSMLEG00000040308) #23	C1orf35 (ENSMLEG00000044367) #24	MRPL55 (ENSMLEG00000043407) #25	ENSMLEG00000033820 #26	IBA57 (ENSMLEG00000035651) #28	ENSMLEG00000000202	OBSCN (ENSMLEG00000039921) #29	TRIM11 (ENSMLEG00000035665) #30	TRIM17 (ENSMLEG00000036683) #31	H3-4 (ENSMLEG00000027834)	H2AC25 (ENSMLEG00000019082) #32	H2BC26 (ENSMLEG00000011931) #33	ENSMLEG00000027649 #34
Sooty mangabey	MODERN SPECIES	269									ENSCATG00000036887	ENSCATG00000028870	JMJD4 (ENSCATG00000030697) #19	SNAP47 (ENSCATG00000017110) #20	ENSCATG00000032383	PRSS38 (ENSCATG00000028007)	WNT9A (ENSCATG00000037437) #21	WNT3A (ENSCATG00000024249) #22	ENSCATG00000026444	ENSCATG00000034162 #23	C1orf35 (ENSCATG00000036828) #24	MRPL55 (ENSCATG00000001114) #25	ENSCATG00000030372 #26	GJC2 (ENSCATG00000043427) #27	IBA57 (ENSCATG00000033547) #28	ENSCATG00000033121	ENSCATG00000015518 #29	ENSCATG00000018563	ENSCATG00000028342 #29	TRIM11 (ENSCATG00000037992) #30	TRIM17 (ENSCATG00000004723) #31	H3-4 (ENSCATG00000015110)	H2AC25 (ENSCATG00000019930) #32
Rhinopithecus	ANCESTRAL SPECIES	247										ENSGT00390000012563.m.b.b	ENSGT00910000147389	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000016274	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34
Black snub-nosed monkey	MODERN SPECIES	736															WNT9A (ENSRBIG00000036258) #21	WNT3A (ENSRBIG00000039877) #22	ENSRBIG00000040413	ARF1 (ENSRBIG00000043809) #23	C1orf35 (ENSRBIG00000032408) #24	MRPL55 (ENSRBIG00000038180) #25	ENSRBIG00000030901 #26	GJC2 (ENSRBIG00000039202) #27	IBA57 (ENSRBIG00000042111) #28	ENSRBIG00000031054	OBSCN (ENSRBIG00000044496) #29	TRIM11 (ENSRBIG00000027735) #30	TRIM17 (ENSRBIG00000017974) #31	H3-4 (ENSRBIG00000029468)	H2AC25 (ENSRBIG00000024183) #32	H2BC26 (ENSRBIG00000013451) #33	ENSRBIG00000029298 #34
Golden snub-nosed monkey	MODERN SPECIES	1884										ENSRROG00000013119	ENSRROG00000036976	JMJD4 (ENSRROG00000039305) #19	SNAP47 (ENSRROG00000004862) #20	PRSS38 (ENSRROG00000032353)	WNT9A (ENSRROG00000031230) #21	WNT3A (ENSRROG00000037718) #22	ENSRROG00000034216	ARF1 (ENSRROG00000040407) #23	C1orf35 (ENSRROG00000039110) #24	MRPL55 (ENSRROG00000033833) #25	ENSRROG00000031989 #26	GJC2 (ENSRROG00000044410) #27	IBA57 (ENSRROG00000033786) #28
Tarsier	MODERN SPECIES	5065							ENSTSYG00000010242	ZNF669 (ENSTSYG00000003204) #18	ENSTSYG00000034800	ENSTSYG00000002726	ENSTSYG00000028507	JMJD4 (ENSTSYG00000000484) #19	SNAP47 (ENSTSYG00000034505) #20	PRSS38 (ENSTSYG00000011299)	WNT9A (ENSTSYG00000025543) #21	WNT3A (ENSTSYG00000027346) #22	ARF1 (ENSTSYG00000027538) #23	CUNH1orf35 (ENSTSYG00000031003) #24	MRPL55 (ENSTSYG00000002932) #25	GUK1 (ENSTSYG00000001325) #26	IBA57 (ENSTSYG00000014591) #28	ENSTSYG00000006833	OBSCN (ENSTSYG00000031392) #29	TRIM11 (ENSTSYG00000029832) #30	TRIM17 (ENSTSYG00000008473) #31	H3-4 (ENSTSYG00000037257)	H2AC25 (ENSTSYG00000026130) #32	H2BC26 (ENSTSYG00000029005) #33	ENSTSYG00000036415 #34
Strepsirrhini	ANCESTRAL SPECIES	52									ENSGT00940000164205	ENSGT01100000263507.D.a.a.b.b.b.b.b	ENSGT00940000153165.a.a.d.j	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT01030000235001	ENSGT01030000234513.B.b.i	ENSGT01050000244864.B.b	ENSGT00940000157028	ENSGT00940000162379	ENSGT00940000157358	ENSGT00730000111087	ENSGT00940000160555	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000159259.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Mouse lemur	MODERN SPECIES	4	GJB2 (ENSMICG00000002850)	GJA3 (ENSMICG00000029524)	ZMYM2 (ENSMICG00000002834)	ZMYM5 (ENSMICG00000012322)	PSPC1 (ENSMICG00000013970)	MPHOSPH8 (ENSMICG00000014677)	PARP4 (ENSMICG00000028028)	CENPJ (ENSMICG00000010400)	RNF17 (ENSMICG00000010364)	ATP12A (ENSMICG00000007697)	ENSMICG00000042765 #15	JMJD4 (ENSMICG00000036474) #19	SNAP47 (ENSMICG00000029011) #20	PRSS38 (ENSMICG00000042943)	WNT9A (ENSMICG00000047095) #21	WNT3A (ENSMICG00000010671) #22	ARF1 (ENSMICG00000047362) #23	C1orf35 (ENSMICG00000027688) #24	MRPL55 (ENSMICG00000031760) #25	GUK1 (ENSMICG00000003322) #26	IBA57 (ENSMICG00000041871) #28	OBSCN (ENSMICG00000000557) #29	TRIM11 (ENSMICG00000029090) #30	TRIM17 (ENSMICG00000013315) #31	H3-4 (ENSMICG00000045112)	H2AC25 (ENSMICG00000044054) #32	H2BC26 (ENSMICG00000041996) #33	ENSMICG00000048090 #34	ENSMICG00000038421	ENSMICG00000046509	ENSMICG00000045969
Lemuriformes_a	ANCESTRAL SPECIES	88	ENSGT01030000235001	ENSGT01030000234513.B.b.i	ENSGT01050000244864.B.b	ENSGT00940000157028	ENSGT00940000162379	ENSGT00940000157358	ENSGT00730000111087	ENSGT00940000160555	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000159259.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Greater bamboo lemur	MODERN SPECIES	769																ENSPSMG00000013201 #22	ARF1 (ENSPSMG00000013226) #23	C1orf35 (ENSPSMG00000013245) #24	MRPL55 (ENSPSMG00000013256) #25	GUK1 (ENSPSMG00000013269) #26	GJC2 (ENSPSMG00000013273) #27	IBA57 (ENSPSMG00000013279) #28	ENSPSMG00000013283 #29	ENSPSMG00000013289 #29	TRIM11 (ENSPSMG00000013308) #30	TRIM17 (ENSPSMG00000013322) #31	ENSPSMG00000013327	ENSPSMG00000013337 ##32	H2BC26 (ENSPSMG00000013352) #33	ENSPSMG00000013365 #34
Coquerels sifaka	MODERN SPECIES	234	GJB2 (ENSPCOG00000012568)	GJA3 (ENSPCOG00000015868)	ZMYM2 (ENSPCOG00000021632)	ZMYM5 (ENSPCOG00000000658)	PSPC1 (ENSPCOG00000014364)	MPHOSPH8 (ENSPCOG00000020055)	PARP4 (ENSPCOG00000022852)	CENPJ (ENSPCOG00000016218)	RNF17 (ENSPCOG00000020211)	ATP12A (ENSPCOG00000025271)	ENSPCOG00000024700	JMJD4 (ENSPCOG00000019446) #19	SNAP47 (ENSPCOG00000012484) #20	PRSS38 (ENSPCOG00000019582)	WNT9A (ENSPCOG00000015468) #21	WNT3A (ENSPCOG00000024931) #22	ARF1 (ENSPCOG00000026770) #23	C1orf35 (ENSPCOG00000025028) #24	MRPL55 (ENSPCOG00000013827) #25	GUK1 (ENSPCOG00000009766) #26	IBA57 (ENSPCOG00000028589) #28	OBSCN (ENSPCOG00000028285) #29	TRIM11 (ENSPCOG00000016532) #30	TRIM17 (ENSPCOG00000026287) #31	H3-4 (ENSPCOG00000026493)	H2AC25 (ENSPCOG00000013826) #32	H2BC26 (ENSPCOG00000003934) #33	ENSPCOG00000005164 #34	RNF187 (ENSPCOG00000002810) #35	ENSPCOG00000024361	ENSPCOG00000026534
Bushbaby	MODERN SPECIES	400										ENSOGAG00000028076	ENSOGAG00000003566	JMJD4 (ENSOGAG00000004942) #19	SNAP47 (ENSOGAG00000004945) #20	PRSS38 (ENSOGAG00000026355)	WNT9A (ENSOGAG00000013474) #21	WNT3A (ENSOGAG00000013493) #22	ARF1 (ENSOGAG00000010974) #23	C1orf35 (ENSOGAG00000010978) #24	MRPL55 (ENSOGAG00000010981) #25	GUK1 (ENSOGAG00000029450) #26	GJC2 (ENSOGAG00000033132) #27	IBA57 (ENSOGAG00000009178) #28	ENSOGAG00000030331 #29	TRIM11 (ENSOGAG00000009216) #30	TRIM17 (ENSOGAG00000009217) #31	H3-4 (ENSOGAG00000031879)	H2AC25 (ENSOGAG00000009219) #32	H2BC26 (ENSOGAG00000009221) #33	ENSOGAG00000031086 #34	RNF187 (ENSOGAG00000011214) #35	ENSOGAG00000030822
Euarchontoglires_A	ANCESTRAL SPECIES	28	ENSGT01090000260086.E.b #8	ENSGT00940000162666 #9	ENSGT01060000248581.C.a.a	ENSGT01050000244828.c.b.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Tree shrew	MODERN SPECIES	7343																WNT3A (ENSTBEG00000006918) #22
Glires	ANCESTRAL SPECIES	29	ENSGT01090000260086.E.b #8	ENSGT00940000162666 #9	ENSGT01060000248581.C.a.a	ENSGT01050000244828.c.b.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Lagomorpha	ANCESTRAL SPECIES	245																ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b
Pika	MODERN SPECIES	7829																WNT3A (ENSOPRG00000000913) #22
Rabbit	MODERN SPECIES	836																WNT3A (ENSOCUG00000004048) #22	ENSOCUG00000023645 #23	C1orf35 (ENSOCUG00000025634) #24	MRPL55 (ENSOCUG00000015380) #25	ENSOCUG00000027935 #26	ENSOCUG00000024517 ##27	ENSOCUG00000024934 #28
Rodentia	ANCESTRAL SPECIES	7	ENSGT01060000248581.C.a.a	ENSGT01050000244828.c.b.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Rodentia_B	ANCESTRAL SPECIES	46				ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Myomorpha	ANCESTRAL SPECIES	28			ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Muroidea	ANCESTRAL SPECIES	10						ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Golden Hamster	MODERN SPECIES	627	Cops3 (ENSMAUG00000017378)	Flcn (ENSMAUG00000017523)	Pld6 (ENSMAUG00000013977)	ENSMAUG00000015837	Or2w25 (ENSMAUG00000020886)	Or2b11 (ENSMAUG00000010476) #11	Nlrp3 (ENSMAUG00000020051) #12	ENSMAUG00000006329	ENSMAUG00000017910	Zkscan17 (ENSMAUG00000016630) #13	ENSMAUG00000019046	Jmjd4 (ENSMAUG00000017265) #19	Snap47 (ENSMAUG00000020014) #20	Prss38 (ENSMAUG00000019978)	Wnt9a (ENSMAUG00000021643) #21	Wnt3a (ENSMAUG00000021475) #22	ENSMAUG00000022253 #23	2310033P09Rik (ENSMAUG00000019958) #24	Guk1 (ENSMAUG00000022283) #26	Gjc2 (ENSMAUG00000020150) #27	Iba57 (ENSMAUG00000020575) #28	Obscn (ENSMAUG00000022279) #29	Trim11 (ENSMAUG00000001510) #30	Trim17 (ENSMAUG00000004817) #31	H3f4 (ENSMAUG00000010700)	ENSMAUG00000010470	H2ac25 (ENSMAUG00000010628) #32	H2bc26-ps (ENSMAUG00000010794) #33	H2bc27 (ENSMAUG00000010540) #34	ENSMAUG00000021471 #35	ENSMAUG00000020727
Chinese hamster chok1gshd	MODERN SPECIES	229	Cops3 (ENSCGRG00001023058)	Flcn (ENSCGRG00001022220)	Pld6 (ENSCGRG00001021455)	Mprip (ENSCGRG00001003308)	ENSCGRG00001005098	Or2aa1 (ENSCGRG00001007439) ##11	Or2b11 (ENSCGRG00001008156) #11	Nlrp3 (ENSCGRG00001021138) #12	ENSCGRG00001021260	Zkscan17 (ENSCGRG00001020767) #13	Zfp867 (ENSCGRG00001016010)	Jmjd4 (ENSCGRG00001013252) #19	Snap47 (ENSCGRG00001004500) #20	Prss38 (ENSCGRG00001019522)	Wnt9a (ENSCGRG00001016816) #21	Wnt3a (ENSCGRG00001015217) #22	Arf1 (ENSCGRG00001013922) #23	2310033P09Rik (ENSCGRG00001021154) #24	Mrpl55 (ENSCGRG00001020506) #25	ENSCGRG00001016847 #26	Gjc2 (ENSCGRG00001008796) #27	Iba57 (ENSCGRG00001007484) #28	Obscn (ENSCGRG00001023809) #29	Trim11 (ENSCGRG00001016227) #30	Trim17 (ENSCGRG00001017038) #31	ENSCGRG00001009610	H2bc27 (ENSCGRG00001005703) #34	H2bc26-ps (ENSCGRG00001013795) #33	H2ac25 (ENSCGRG00001008750) #32	ENSCGRG00001017170 #35	ENSCGRG00001015992
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000017379	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Northern American deer mouse	MODERN SPECIES	21	Nt5m (ENSPEMG00000018986)	Cops3 (ENSPEMG00000019212)	Flcn (ENSPEMG00000001290)	Pld6 (ENSPEMG00000002262)	Mprip (ENSPEMG00000005808)	ENSPEMG00000027834	Or2b11 (ENSPEMG00000027692) #11	Nlrp3 (ENSPEMG00000018349) #12	Zkscan17 (ENSPEMG00000028678) #13	Zfp867 (ENSPEMG00000015201)	Jmjd4 (ENSPEMG00000025158) #19	Snap47 (ENSPEMG00000003186) #20	Prss38 (ENSPEMG00000000315)	ENSPEMG00000026476	Wnt9a (ENSPEMG00000008917) #21	Wnt3a (ENSPEMG00000014970) #22	Arf1 (ENSPEMG00000024884) #23	2310033P09Rik (ENSPEMG00000016726) #24	Mrpl55 (ENSPEMG00000010381) #25	Guk1 (ENSPEMG00000007733) #26	Gjc2 (ENSPEMG00000015748) #27	Iba57 (ENSPEMG00000029448) #28	Obscn (ENSPEMG00000017360) #29	Trim11 (ENSPEMG00000013300) #30	Trim17 (ENSPEMG00000012957) #31	H3f4 (ENSPEMG00000028465)	H2ac25 (ENSPEMG00000025825) #32	H2bc26-ps (ENSPEMG00000029564) #33	H2bc27 (ENSPEMG00000029370) #34	ENSPEMG00000024885 #35	Btnl10 (ENSPEMG00000010544) #36
Prairie vole	MODERN SPECIES	15	ENSMOCG00000021960	Pld6 (ENSMOCG00000014600)	ENSMOCG00000020749	ENSMOCG00000002772	Or2w25 (ENSMOCG00000002703)	Or2b11 (ENSMOCG00000002219) #11	Nlrp3 (ENSMOCG00000022962) #12	ENSMOCG00000004021	ENSMOCG00000007500	Zkscan17 (ENSMOCG00000021773) #13	Zfp867 (ENSMOCG00000017475)	Jmjd4 (ENSMOCG00000019517) #19	Snap47 (ENSMOCG00000021698) #20	Prss38 (ENSMOCG00000020492)	Wnt9a (ENSMOCG00000022972) #21	Wnt3a (ENSMOCG00000022805) #22	Arf1 (ENSMOCG00000005344) #23	2310033P09Rik (ENSMOCG00000020633) #24	Mrpl55 (ENSMOCG00000022355) #25	Guk1 (ENSMOCG00000020868) #26	Gjc2 (ENSMOCG00000015445) #27	Iba57 (ENSMOCG00000019048) #28	Obscn (ENSMOCG00000009245) #29	Trim11 (ENSMOCG00000021941) #30	Trim17 (ENSMOCG00000016644) #31	H3f4 (ENSMOCG00000002973)	H2ac25 (ENSMOCG00000002942) #32	H2bc26-ps (ENSMOCG00000003080) #33	H2bc27 (ENSMOCG00000002061) #34	Rnf187 (ENSMOCG00000021645)	Btnl10 (ENSMOCG00000005486) #36
Murinae	ANCESTRAL SPECIES	7	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00950000183522	ENSGT00940000163997 #36
Mus	ANCESTRAL SPECIES	2	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00950000183522	ENSGT00940000163997 #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00950000183522	ENSGT00940000163997 #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00950000183522	ENSGT00940000163997 #36
Mouse	MODERN SPECIES	2	Nt5m (ENSMUSG00000032615)	Cops3 (ENSMUSG00000019373)	Flcn (ENSMUSG00000032633)	Pld6 (ENSMUSG00000043648)	Mprip (ENSMUSG00000005417)	Or2w25 (ENSMUSG00000044061)	Or2aa1 (ENSMUSG00000048919) ##11	Or2b11 (ENSMUSG00000059610) #11	Nlrp3 (ENSMUSG00000032691) #12	Zkscan17 (ENSMUSG00000020472) #13	Zfp867 (ENSMUSG00000054519)	Jmjd4 (ENSMUSG00000036819) #19	Snap47 (ENSMUSG00000009894) #20	Prss38 (ENSMUSG00000049291)	Wnt9a (ENSMUSG00000000126) #21	Wnt3a (ENSMUSG00000009900) #22	Arf1 (ENSMUSG00000048076) #23	2310033P09Rik (ENSMUSG00000020441) #24	Mrpl55 (ENSMUSG00000036860) #25	Guk1 (ENSMUSG00000020444) #26	Gjc2 (ENSMUSG00000043448) #27	Iba57 (ENSMUSG00000049287) #28	Obscn (ENSMUSG00000061462) #29	Trim11 (ENSMUSG00000020455) #30	H3f4 (ENSMUSG00000080152)	Trim17 (ENSMUSG00000036964) #31	H2ac25 (ENSMUSG00000078851) #32	H2bc26-ps (ENSMUSG00000080712) #33	H2bc27 (ENSMUSG00000056895) #34	Rnf187 (ENSMUSG00000020496)	Btnl10 (ENSMUSG00000020490) #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00900000143207	ENSGT00940000161967 #13	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.g.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00950000183522	ENSGT00940000163997 #36
Steppe mouse	MODERN SPECIES	3105	Flcn (ENSMSIG00000020231)	Pld6 (ENSMSIG00000020253)	Mprip (ENSMSIG00000020270)	Or2aa1 (ENSMSIG00000020924) ##11	Or2b11 (ENSMSIG00000020930) #11	Nlrp3 (ENSMSIG00000020937) #12	ENSMSIG00000020981	ENSMSIG00000020992	Zkscan17 (ENSMSIG00000020997) #13	ENSMSIG00000021018	Zfp867 (ENSMSIG00000021023)	Jmjd4 (ENSMSIG00000021041) #19	Snap47 (ENSMSIG00000021067) #20	Prss38 (ENSMSIG00000021101)	Wnt9a (ENSMSIG00000021113) #21	Wnt3a (ENSMSIG00000021119) #22	ENSMSIG00000021128 #23	2310033P09Rik (ENSMSIG00000021149) #24	Mrpl55 (ENSMSIG00000021173) #25	Guk1 (ENSMSIG00000021189) #26	Gjc2 (ENSMSIG00000021219) #27	Iba57 (ENSMSIG00000021231) #28	ENSMSIG00000021247	Obscn (ENSMSIG00000021262) #29	ENSMSIG00000021680	Trim11 (ENSMSIG00000021692) #30	Trim17 (ENSMSIG00000021747) #31	H3f4 (ENSMSIG00000021760)	H2ac25 (ENSMSIG00000021773) #32	H2bc26-ps (ENSMSIG00000021777) #33	H2bc27 (ENSMSIG00000021813) #34
spretus	MODERN SPECIES	2	Nt5m (MGP_SPRETEiJ_G0017281)	Cops3 (MGP_SPRETEiJ_G0017280)	Flcn (MGP_SPRETEiJ_G0017279)	Pld6 (MGP_SPRETEiJ_G0017278)	Mprip (MGP_SPRETEiJ_G0017277)	MGP_SPRETEiJ_G0009402 ##11	MGP_SPRETEiJ_G0017276 ##11	Or2b11 (MGP_SPRETEiJ_G0017275) #11	Nlrp3 (MGP_SPRETEiJ_G0017274) #12	Zkscan17 (MGP_SPRETEiJ_G0017273) #13	Zfp867 (MGP_SPRETEiJ_G0017272)	Jmjd4 (MGP_SPRETEiJ_G0017271) #19	Snap47 (MGP_SPRETEiJ_G0017270) #20	Prss38 (MGP_SPRETEiJ_G0017269)	Wnt9a (MGP_SPRETEiJ_G0017268) #21	Wnt3a (MGP_SPRETEiJ_G0017267) #22	2310033P09Rik (MGP_SPRETEiJ_G0017266) #24	Mrpl55 (MGP_SPRETEiJ_G0017265) #25	Guk1 (MGP_SPRETEiJ_G0017264) #26	Gjc2 (MGP_SPRETEiJ_G0017263) #27	Iba57 (MGP_SPRETEiJ_G0017262) #28	Obscn (MGP_SPRETEiJ_G0017261) #29	Trim11 (MGP_SPRETEiJ_G0017260) #30	Trim17 (MGP_SPRETEiJ_G0017259) #31	H2ac25 (MGP_SPRETEiJ_G0017258) #32	H2bc27 (MGP_SPRETEiJ_G0017257) #34	MGP_SPRETEiJ_G0017256	Btnl10 (MGP_SPRETEiJ_G0017255) #36	Zfp39 (MGP_SPRETEiJ_G0017254)	2810021J22Rik (MGP_SPRETEiJ_G0017253)	Gm12258 (MGP_SPRETEiJ_G0017252)
Ryukyu mouse	MODERN SPECIES	2	Nt5m (MGP_CAROLIEiJ_G0016446)	Cops3 (MGP_CAROLIEiJ_G0016445)	Flcn (MGP_CAROLIEiJ_G0016444)	Pld6 (MGP_CAROLIEiJ_G0016443)	Mprip (MGP_CAROLIEiJ_G0016442)	Or2w25 (MGP_CAROLIEiJ_G0008942)	Or2aa1 (MGP_CAROLIEiJ_G0016441) ##11	Or2b11 (MGP_CAROLIEiJ_G0016440) #11	Nlrp3 (MGP_CAROLIEiJ_G0016439) #12	Zkscan17 (MGP_CAROLIEiJ_G0016438) #13	Zfp867 (MGP_CAROLIEiJ_G0016437)	Jmjd4 (MGP_CAROLIEiJ_G0016436) #19	MGP_CAROLIEiJ_G0016435 #20	Prss38 (MGP_CAROLIEiJ_G0016434)	Wnt9a (MGP_CAROLIEiJ_G0016433) #21	Wnt3a (MGP_CAROLIEiJ_G0016432) #22	MGP_CAROLIEiJ_G0016431 #23	MGP_CAROLIEiJ_G0016430 #23	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #24	Mrpl55 (MGP_CAROLIEiJ_G0016428) #25	Guk1 (MGP_CAROLIEiJ_G0016427) #26	Gjc2 (MGP_CAROLIEiJ_G0016426) #27	Iba57 (MGP_CAROLIEiJ_G0016425) #28	MGP_CAROLIEiJ_G0016424 #29	Trim11 (MGP_CAROLIEiJ_G0016423) #30	Trim17 (MGP_CAROLIEiJ_G0016421) #31	H2ac25 (MGP_CAROLIEiJ_G0016422) #32	H2bc27 (MGP_CAROLIEiJ_G0016420) #34	MGP_CAROLIEiJ_G0016419	Btnl10 (MGP_CAROLIEiJ_G0016418) #36	Zfp39 (MGP_CAROLIEiJ_G0016417)
Shrew mouse	MODERN SPECIES	5	Nt5m (MGP_PahariEiJ_G0017576)	Cops3 (MGP_PahariEiJ_G0017575)	Flcn (MGP_PahariEiJ_G0017574)	Pld6 (MGP_PahariEiJ_G0017573)	Mprip (MGP_PahariEiJ_G0017572)	Or2w25 (MGP_PahariEiJ_G0008415)	Or2aa1 (MGP_PahariEiJ_G0017571) ##11	Or2b11 (MGP_PahariEiJ_G0017570) #11	MGP_PahariEiJ_G0017569 #12	Zkscan17 (MGP_PahariEiJ_G0017568) #13	Zfp867 (MGP_PahariEiJ_G0017567)	Jmjd4 (MGP_PahariEiJ_G0017566) #19	MGP_PahariEiJ_G0017565 #20	Prss38 (MGP_PahariEiJ_G0017564)	Wnt9a (MGP_PahariEiJ_G0017563) #21	Wnt3a (MGP_PahariEiJ_G0017562) #22	Arf1 (MGP_PahariEiJ_G0017561) #23	2310033P09Rik (MGP_PahariEiJ_G0017560) #24	Mrpl55 (MGP_PahariEiJ_G0017559) #25	Guk1 (MGP_PahariEiJ_G0017558) #26	Gjc2 (MGP_PahariEiJ_G0017557) #27	Iba57 (MGP_PahariEiJ_G0017556) #28	Obscn (MGP_PahariEiJ_G0017555) #29	Trim11 (MGP_PahariEiJ_G0017554) #30	Trim17 (MGP_PahariEiJ_G0017553) #31	H2ac25 (MGP_PahariEiJ_G0017552) #32	H2bc27 (MGP_PahariEiJ_G0017551) #34	MGP_PahariEiJ_G0017550	Btnl10 (MGP_PahariEiJ_G0017549) #36	Zfp39 (MGP_PahariEiJ_G0017548)	2810021J22Rik (MGP_PahariEiJ_G0017547)
Rat	MODERN SPECIES	1	Nt5m (ENSRNOG00000003332)	Cops3 (ENSRNOG00000053943)	Flcn (ENSRNOG00000003302)	Pld6 (ENSRNOG00000021657)	Mprip (ENSRNOG00000003226)	Or2aa1 (ENSRNOG00000003210) ##11	Or2b11 (ENSRNOG00000022244) #11	Nlrp3 (ENSRNOG00000003170) #12	Zfp496 (ENSRNOG00000003129) #13	Ftl1 (ENSRNOG00000020843)	Zfp867 (ENSRNOG00000022431)	Jmjd4 (ENSRNOG00000022438) #19	Snap47 (ENSRNOG00000022472) #20	Prss38 (ENSRNOG00000022548)	Wnt9a (ENSRNOG00000003066) #21	Wnt3a (ENSRNOG00000003039) #22	Arf1 (ENSRNOG00000060229) #23	C10h1orf35 (ENSRNOG00000002944) #24	Mrpl55 (ENSRNOG00000002943) #25	Guk1 (ENSRNOG00000002928) #26	Gjc2 (ENSRNOG00000038328) #27	Iba57 (ENSRNOG00000068756) #28	Obscn (ENSRNOG00000058068) #29	Trim11 (ENSRNOG00000002915) #30	H2ac25 (ENSRNOG00000022983) #31	H2ac25 (ENSRNOG00000064520) #32	H2bu1 (ENSRNOG00000066919) #33	Hist3h2ba (ENSRNOG00000043419) #34	Rnf187 (ENSRNOG00000049219)	Btnl10 (ENSRNOG00000043019) #36	Zfp39 (ENSRNOG00000014712)
Upper Galilee mountains blind mole rat	MODERN SPECIES	361							ENSNGAG00000023903	Or2b11 (ENSNGAG00000011866) #11	Nlrp3 (ENSNGAG00000013972) #12	Zkscan17 (ENSNGAG00000021846) #13	Zfp867 (ENSNGAG00000020914)	Jmjd4 (ENSNGAG00000023540) #19	Snap47 (ENSNGAG00000021482) #20	Prss38 (ENSNGAG00000012956)	Wnt9a (ENSNGAG00000010691) #21	Wnt3a (ENSNGAG00000018479) #22	Arf1 (ENSNGAG00000015070) #23	2310033P09Rik (ENSNGAG00000016568) #24	Mrpl55 (ENSNGAG00000023889) #25
Lesser Egyptian jerboa	MODERN SPECIES	63	Or2y1e (ENSJJAG00000004331)	ENSJJAG00000004545	ENSJJAG00000005004	ENSJJAG00000004303	ENSJJAG00000019586	ENSJJAG00000020201	Or2aa1 (ENSJJAG00000021579) ##11	Or2b11 (ENSJJAG00000004515) #11	Nlrp3 (ENSJJAG00000007323) #12	Zkscan17 (ENSJJAG00000022828) #13	Zfp867 (ENSJJAG00000008459)	Jmjd4 (ENSJJAG00000012776) #19	Snap47 (ENSJJAG00000023009) #20	Prss38 (ENSJJAG00000022512)	Wnt9a (ENSJJAG00000020971) #21	Wnt3a (ENSJJAG00000020598) #22	ENSJJAG00000020245 #23	2310033P09Rik (ENSJJAG00000001888) #24	Mrpl55 (ENSJJAG00000021164) #25	Guk1 (ENSJJAG00000021658) #26	Gjc2 (ENSJJAG00000011405) #27	Iba57 (ENSJJAG00000023432) #28	Obscn (ENSJJAG00000023196) #29	Trim11 (ENSJJAG00000019654) #30	Trim17 (ENSJJAG00000017850) #31	ENSJJAG00000017460	H2ac25 (ENSJJAG00000004184) #32	H2bc26-ps (ENSJJAG00000003959) #33	ENSJJAG00000011864 #35	Btnl10 (ENSJJAG00000023413) #36	Zfp39 (ENSJJAG00000018925)
Kangaroo rat	MODERN SPECIES	709																ENSDORG00000003770 #22
Rodentia_A	ANCESTRAL SPECIES	31	ENSGT01060000248581.C.a.a	ENSGT01050000244828.c.b.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Sciuridae	ANCESTRAL SPECIES	55	ENSGT01090000260086.E.b #8	ENSGT00940000162666 #9	ENSGT01060000248581.C.a.a	ENSGT01050000244828.c.b.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Marmotini	ANCESTRAL SPECIES	100								ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Marmotini_b	ANCESTRAL SPECIES	218									ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
Squirrel	MODERN SPECIES	463								ENSSTOG00000027492	OR2C3 (ENSSTOG00000008172)	NLRP3 (ENSSTOG00000010228) #12	ZNF496 (ENSSTOG00000027824) #13	JMJD4 (ENSSTOG00000006186) #19	SNAP47 (ENSSTOG00000028391) #20	PRSS38 (ENSSTOG00000027275)	WNT9A (ENSSTOG00000008351) #21	WNT3A (ENSSTOG00000027360) #22	ENSSTOG00000009288 #23	C1orf35 (ENSSTOG00000009295) #24	GUK1 (ENSSTOG00000026156) #26	GJC2 (ENSSTOG00000009501) #27	IBA57 (ENSSTOG00000020525) #28
Arctic ground squirrel	MODERN SPECIES	712							ZNF496 (ENSUPAG00010009506) #13	ENSUPAG00010009519	ENSUPAG00010009530	ENSUPAG00010009533	ENSUPAG00010009536	JMJD4 (ENSUPAG00010009540) #19	SNAP47 (ENSUPAG00010009551) #20	PRSS38 (ENSUPAG00010009560)	WNT9A (ENSUPAG00010009568) #21	WNT3A (ENSUPAG00010009580) #22	ENSUPAG00010009582	C1orf35 (ENSUPAG00010009587) #24	MRPL55 (ENSUPAG00010009599) #25	GUK1 (ENSUPAG00010009613) #26	IBA57 (ENSUPAG00010009641) #28
Alpin marmot	MODERN SPECIES	56	ENSMMMG00000017294	ENSMMMG00000017305	ENSMMMG00000017308	ENSMMMG00000017312	ENSMMMG00000017317	ENSMMMG00000017321	OR2B11 (ENSMMMG00000017357) #11	NLRP3 (ENSMMMG00000017362) #12	ZNF496 (ENSMMMG00000017364) #13	ENSMMMG00000017372	ENSMMMG00000017378	JMJD4 (ENSMMMG00000017399) #19	SNAP47 (ENSMMMG00000017415) #20	PRSS38 (ENSMMMG00000017421)	WNT9A (ENSMMMG00000017429) #21	WNT3A (ENSMMMG00000017437) #22	ENSMMMG00000017464 #23	MRPL55 (ENSMMMG00000017475) #25	GUK1 (ENSMMMG00000017488) #26	GJC2 (ENSMMMG00000017501) #27	IBA57 (ENSMMMG00000017504) #28	OBSCN (ENSMMMG00000017510) #29	TRIM11 (ENSMMMG00000017547) #30	TRIM17 (ENSMMMG00000017550) #31	H3-4 (ENSMMMG00000017555)	H2AC25 (ENSMMMG00000017567) #32	H2BC26 (ENSMMMG00000017570) #33	ENSMMMG00000017596 #34	RNF187 (ENSMMMG00000017598) #35	ENSMMMG00000017603 #36	ENSMMMG00000017616
Eurasian red squirrel	MODERN SPECIES	15	OR1C1 (ENSSVLG00005004820)	OR6F1 (ENSSVLG00005004776) #8	ENSSVLG00005004766	ENSSVLG00005004759	ENSSVLG00005004740	OR14L1P (ENSSVLG00005004728)	OR2G3 (ENSSVLG00005004718)	ENSSVLG00005004709	GCSAML (ENSSVLG00005004676) #10	OR2C3 (ENSSVLG00005004659)	NLRP3 (ENSSVLG00005004506) #12	JMJD4 (ENSSVLG00005004411) #19	SNAP47 (ENSSVLG00005004391) #20	PRSS38 (ENSSVLG00005004365)	WNT9A (ENSSVLG00005004346) #21	WNT3A (ENSSVLG00005004327) #22	ENSSVLG00005004310 #23	C1orf35 (ENSSVLG00005004286) #24	MRPL55 (ENSSVLG00005004258) #25	ENSSVLG00005004242	GUK1 (ENSSVLG00005004220) #26	ENSSVLG00005004192	GJC2 (ENSSVLG00005004174) #27	IBA57 (ENSSVLG00005004163) #28	OBSCN (ENSSVLG00005004022) #29	TRIM11 (ENSSVLG00005003920) #30	TRIM17 (ENSSVLG00005003894) #31	H3-4 (ENSSVLG00005003884)	H2AC25 (ENSSVLG00005003875) #32	H2BC26 (ENSSVLG00005003865) #33	ENSSVLG00005003856 #34
Hystricomorpha	ANCESTRAL SPECIES	63	ENSGT01090000259995.b.b.b	ENSGT01090000260018.C.b.a.a.x	ENSGT01060000248581.C.a.b.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a.c ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Hystricomorpha_a	ANCESTRAL SPECIES	79				ENSGT01090000260018.C.b.a.a.x	ENSGT01060000248581.C.a.b.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Hystricomorpha_b	ANCESTRAL SPECIES	106						ENSGT01060000248581.C.a.b.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36	ENSGT00940000160177
Long-tailed chinchilla	MODERN SPECIES	288					ENSCLAG00000000675	ENSCLAG00000000640	OR9H1P (ENSCLAG00000017416)	OR2G3 (ENSCLAG00000017414)	ENSCLAG00000000375	OR2B11 (ENSCLAG00000017578) #11	NLRP3 (ENSCLAG00000000708) #12	ZNF496 (ENSCLAG00000000579) #13	JMJD4 (ENSCLAG00000000501) #19	SNAP47 (ENSCLAG00000000744) #20	WNT9A (ENSCLAG00000000535) #21	WNT3A (ENSCLAG00000000529) #22	ARF1 (ENSCLAG00000000520) #23	C1orf35 (ENSCLAG00000001077) #24	MRPL55 (ENSCLAG00000000917) #25	GUK1 (ENSCLAG00000000853) #26	IBA57 (ENSCLAG00000000741) #28	ENSCLAG00000000505 #29	TRIM11 (ENSCLAG00000000197) #30	TRIM17 (ENSCLAG00000000538) #31	H2BC26 (ENSCLAG00000017444) #33	ENSCLAG00000017452 #34	RNF187 (ENSCLAG00000001629) #35	ENSCLAG00000001526	ENSCLAG00000001377
Degu	MODERN SPECIES	351					ENSODEG00000001509	OR2G3 (ENSODEG00000018774)	ENSODEG00000001954	OR2C3 (ENSODEG00000018646)	OR2B11 (ENSODEG00000018706) #11	NLRP3 (ENSODEG00000001033) #12	ENSODEG00000001075	ZNF496 (ENSODEG00000001108) #13	JMJD4 (ENSODEG00000001154) #19	ENSODEG00000001243 #20	WNT9A (ENSODEG00000001287) #21	WNT3A (ENSODEG00000000874) #22	ENSODEG00000000958 #23	C1orf35 (ENSODEG00000000976) #24	MRPL55 (ENSODEG00000001067) #25	GUK1 (ENSODEG00000001088) #26	GJC2 (ENSODEG00000018947) #27	IBA57 (ENSODEG00000001118) #28	TRIM11 (ENSODEG00000001136) #30	TRIM17 (ENSODEG00000001638) #31	ENSODEG00000018714 #34	RNF187 (ENSODEG00000000732) #35	ENSODEG00000000778 #36	ENSODEG00000000805
Guinea pig	MODERN SPECIES	6												JMJD4 (ENSCPOG00000014538) #19	SNAP47 (ENSCPOG00000008518) #20	PRSS38 (ENSCPOG00000022885)	WNT9A (ENSCPOG00000040771) #21	WNT3A (ENSCPOG00000030339) #22	ARF1 (ENSCPOG00000039117) #23	C1orf35 (ENSCPOG00000000984) #24	MRPL55 (ENSCPOG00000014241) #25	GUK1 (ENSCPOG00000037747) #26	GJC2 (ENSCPOG00000015099) #27	IBA57 (ENSCPOG00000035382) #28	TRIM11 (ENSCPOG00000037756) #30	TRIM17 (ENSCPOG00000004213) #31	H3-4 (ENSCPOG00000034653)	ENSCPOG00000040098	ENSCPOG00000021756 #34	RNF187 (ENSCPOG00000007405) #35	ENSCPOG00000036704	CDC23 (ENSCPOG00000010715)	GFRA3 (ENSCPOG00000006594)
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000042185 ##11	ENSHGLG00000044964 ##11	ENSHGLG00000019776 ##11	ENSHGLG00000035253 ##11	ENSHGLG00000045465 ##11	ENSHGLG00000041322	ENSHGLG00000000615 ##11	ENSHGLG00000000671 #11	ENSHGLG00000043542 #12	ENSHGLG00000001102 #13	ENSHGLG00000047340	JMJD4 (ENSHGLG00000001365) #19	ENSHGLG00000001357 #20	PRSS38 (ENSHGLG00000043627)	WNT9A (ENSHGLG00000038418) #21	WNT3A (ENSHGLG00000001502) #22	ARF1 (ENSHGLG00000038119) #23	ENSHGLG00000001640 #24	MRPL55 (ENSHGLG00000048301) #25	GUK1 (ENSHGLG00000000309) #26	GJC2 (ENSHGLG00000033969) #27	IBA57 (ENSHGLG00000002132) #28	OBSCN (ENSHGLG00000047806) #29	TRIM11 (ENSHGLG00000002253) #30	TRIM17 (ENSHGLG00000006970) #31	H3-4 (ENSHGLG00000020558)	H2AC25 (ENSHGLG00000037975) #32	H2BC26 (ENSHGLG00000044541) #33	ENSHGLG00000035981 #34	ENSHGLG00000000597 #35	ENSHGLG00000038457 #36
Laurasiatheria	ANCESTRAL SPECIES	30	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160510 #22
Hedgehog	MODERN SPECIES	4926																ENSEEUG00000004397 #22
Laurasiatheria_a	ANCESTRAL SPECIES	23	ENSGT00940000163486	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a ##11	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Artiodactyla	ANCESTRAL SPECIES	31												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Suina	ANCESTRAL SPECIES	56												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00940000163997 #36	ENSGT00390000009510 #35	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00940000153092.a.a.c.b #32	ENSGT00940000162155 #31	ENSGT00940000160371 #30	ENSGT00940000154756.A #29	ENSGT00390000006465 #28	ENSGT00940000162327	ENSGT00940000163610
Chacoan peccary	MODERN SPECIES	953	ODF3B (ENSCWAG00000020298)	ENSCWAG00000020329	SYCE3 (ENSCWAG00000020334)	CPT1B (ENSCWAG00000020353)	CHKB (ENSCWAG00000020388)	MAPK8IP2 (ENSCWAG00000020407)	ARSA (ENSCWAG00000020433)	SHANK3 (ENSCWAG00000020472)	ENSCWAG00000020508	ENSCWAG00000020519	OR4A16 (ENSCWAG00000020533)	JMJD4 (ENSCWAG00000020541) #19	SNAP47 (ENSCWAG00000020551) #20	PRSS38 (ENSCWAG00000020558)	WNT9A (ENSCWAG00000020570) #21	WNT3A (ENSCWAG00000020576) #22	ARF1 (ENSCWAG00000020582) #23	C1orf35 (ENSCWAG00000020590) #24	MRPL55 (ENSCWAG00000020597) #25	GUK1 (ENSCWAG00000020604) #26	GJC2 (ENSCWAG00000020627) #27	IBA57 (ENSCWAG00000020636) #28	OBSCN (ENSCWAG00000020667) #29	TRIM11 (ENSCWAG00000020837) #30	TRIM17 (ENSCWAG00000020852) #31	H2AC25 (ENSCWAG00000020876) #32	H2BC26 (ENSCWAG00000020885) #33	RNF187 (ENSCWAG00000020893) #35	ENSCWAG00000020902 #36	ENSCWAG00000020908	PGBD2 (ENSCWAG00000008376)
Pig	MODERN SPECIES	10	ENSSSCG00000051990	ENSSSCG00000022191	WEE1 (ENSSSCG00000013411)	ENSSSCG00000043165	ENSSSCG00000038176	ENSSSCG00000042508	ENSSSCG00000032924	ENSSSCG00000040165	ENSSSCG00000014467	ENSSSCG00000036276	JMJD4 (ENSSSCG00000013983) #19	SNAP47 (ENSSSCG00000013984) #20	ENSSSCG00000057198	ENSSSCG00000048546	WNT9A (ENSSSCG00000024671) #21	WNT3A (ENSSSCG00000029870) #22	ARF1 (ENSSSCG00000013992) #23	C1orf35 (ENSSSCG00000013991) #24	MRPL55 (ENSSSCG00000029050) #25	ENSSSCG00000013990 #26	GJC2 (ENSSSCG00000013989) #27	OBSCN (ENSSSCG00000034569) #29	RNF187 (ENSSSCG00000032994) #35	H2BC26 (ENSSSCG00000061158) #33	H2AC25 (ENSSSCG00000047900) #32	TRIM17 (ENSSSCG00000014000) #31	TRIM11 (ENSSSCG00000035985) #30	ENSSSCG00000059454	ENSSSCG00000026598	ENSSSCG00000013980	ENSSSCG00000039611
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35
Camelidae	ANCESTRAL SPECIES	109												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000163657.j	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35
Arabian camel	MODERN SPECIES	22	OR2T11 (ENSCDRG00005007855)	OR2G6 (ENSCDRG00005007839)	ENSCDRG00005007831	ENSCDRG00005007764	ENSCDRG00005007716	ENSCDRG00005007674	ENSCDRG00005007599	LYPD8 (ENSCDRG00005007575)	SH3BP5L (ENSCDRG00005007520)	ENSCDRG00005007493	ENSCDRG00005007466	JMJD4 (ENSCDRG00005007427) #19	SNAP47 (ENSCDRG00005007395) #20	PRSS38 (ENSCDRG00005007311)	WNT9A (ENSCDRG00005007206) #21	WNT3A (ENSCDRG00005007136) #22	ENSCDRG00005007080	MRPL55 (ENSCDRG00005007045) #25	GUK1 (ENSCDRG00005006904) #26	GJC2 (ENSCDRG00005006871) #27	IBA57 (ENSCDRG00005006837) #28	ENSCDRG00005006705 #29	TRIM11 (ENSCDRG00005006600) #30	TRIM17 (ENSCDRG00005006573) #31	H3-4 (ENSCDRG00005006553)	H2AC25 (ENSCDRG00005006540) #32	H2BC26 (ENSCDRG00005006528) #33	ENSCDRG00005006516 #35	ENSCDRG00005006493	ENSCDRG00005006375
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.ld #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00940000154756.A.kd.a #29
Cetacea	ANCESTRAL SPECIES	1	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.kd.a #29	ENSGT00390000009510 #35	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00940000162155 #31	ENSGT00940000160371 #30	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000162327	ENSGT00940000161175	ENSGT01100000263552.g.b.a.a
Blue whale	MODERN SPECIES	14	CBY3 (ENSBMSG00010008469)	HNRNPH1 (ENSBMSG00010008502)	RUFY1 (ENSBMSG00010008550)	ENSBMSG00010008570	ENSBMSG00010008587	ENSBMSG00010008598	ZNF879 (ENSBMSG00010008639)	GRM6 (ENSBMSG00010008657)	ZNF454 (ENSBMSG00010008671)	ZFP2 (ENSBMSG00010008682)	ZNF354B (ENSBMSG00010008689)	JMJD4 (ENSBMSG00010008694) #19	SNAP47 (ENSBMSG00010008703) #20	PRSS38 (ENSBMSG00010008714)	WNT9A (ENSBMSG00010008726) #21	WNT3A (ENSBMSG00010008734) #22	ENSBMSG00010008747 #23	C1orf35 (ENSBMSG00010008763) #24	ENSBMSG00010008778 #25	GUK1 (ENSBMSG00010008805) #26	GJC2 (ENSBMSG00010008838) #27	IBA57 (ENSBMSG00010008847) #28	ENSBMSG00010008859	ENSBMSG00010008882 #29	ENSBMSG00010000077 #29	RNF187 (ENSBMSG00010000103) #35	H2BC26 (ENSBMSG00010000114) #33	H2AC25 (ENSBMSG00010000131) #32	TRIM11 (ENSBMSG00010000144) #30	ENSBMSG00010000168 #36	ENSBMSG00010000187
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00940000154756.A.ld #29	ENSGT00390000009510 #35	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000162155 #31	ENSGT00940000160371 #30
Sperm whale	MODERN SPECIES	11	HNRNPH1 (ENSPCTG00005001402)	RUFY1 (ENSPCTG00005001444)	ENSPCTG00005001527	ADAMTS2 (ENSPCTG00005001538)	ZNF354C (ENSPCTG00005001563)	ZNF879 (ENSPCTG00005001578)	ENSPCTG00005001587	GRM6 (ENSPCTG00005001608)	ZNF454 (ENSPCTG00005001630)	ZFP2 (ENSPCTG00005001642)	ZNF354B (ENSPCTG00005001661)	JMJD4 (ENSPCTG00005001672) #19	SNAP47 (ENSPCTG00005001687) #20	PRSS38 (ENSPCTG00005001709)	WNT9A (ENSPCTG00005001728) #21	WNT3A (ENSPCTG00005001738) #22	ARF1 (ENSPCTG00005001753) #23	C1orf35 (ENSPCTG00005001766) #24	ENSPCTG00005001780 #25	GUK1 (ENSPCTG00005001793) #26	GJC2 (ENSPCTG00005001808) #27	IBA57 (ENSPCTG00005001814) #28	ENSPCTG00005001819	ENSPCTG00005001826	ENSPCTG00005001837 #29	ENSPCTG00005001845 #29	ENSPCTG00005001857 #29	RNF187 (ENSPCTG00005001868) #35	H2BC26 (ENSPCTG00005001875) #33	H2AC25 (ENSPCTG00005001884) #32	ENSPCTG00005001893
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00940000154756.A.ld #29	ENSGT00390000009510 #35	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000162155 #31	ENSGT00940000160371 #30
Dolphin	MODERN SPECIES	2395														PRSS38 (ENSTTRG00000006734)	WNT9A (ENSTTRG00000006742) #21	ENSTTRG00000006745 #22
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT00940000155143.mb.b.a	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00940000154756.A.ld #29	ENSGT00390000009510 #35	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000162155 #31	ENSGT00940000160371 #30
Vaquita	MODERN SPECIES	14	CANX (ENSPSNG00000008859)	CBY3 (ENSPSNG00000008816)	ENSPSNG00000008738	RUFY1 (ENSPSNG00000008611)	ADAMTS2 (ENSPSNG00000008224)	ZNF879 (ENSPSNG00000008106)	ENSPSNG00000008070	GRM6 (ENSPSNG00000007996)	ZNF454 (ENSPSNG00000007949)	ZFP2 (ENSPSNG00000007917)	ZNF354B (ENSPSNG00000007886)	JMJD4 (ENSPSNG00000007858) #19	SNAP47 (ENSPSNG00000007830) #20	PRSS38 (ENSPSNG00000007771)	WNT9A (ENSPSNG00000007743) #21	WNT3A (ENSPSNG00000007708) #22	ENSPSNG00000007683 #23	C1orf35 (ENSPSNG00000007656) #24	MRPL55 (ENSPSNG00000007632) #25	GUK1 (ENSPSNG00000007583) #26	GJC2 (ENSPSNG00000007534) #27	IBA57 (ENSPSNG00000007499) #28	ENSPSNG00000003866	ENSPSNG00000003825 #29	ENSPSNG00000003780 #29	RNF187 (ENSPSNG00000003755) #35	H2BC26 (ENSPSNG00000003742) #33	H2AC25 (ENSPSNG00000003735) #32	ENSPSNG00000003725	TRIM17 (ENSPSNG00000003706) #31	TRIM11 (ENSPSNG00000003681) #30
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000153137.a.b.a	ENSGT00940000153503.a.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000162715	ENSGT00940000162816	ENSGT00940000155143.mb.b.a	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00390000009510 #35	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000162155 #31	ENSGT00940000160371 #30	ENSGT01090000259995.a.a.b.a.a.a.a
Beluga whale	MODERN SPECIES	93	RUFY1 (ENSDLEG00000012804)	ENSDLEG00000012788	ENSDLEG00000012767	ADAMTS2 (ENSDLEG00000012411)	ZNF354C (ENSDLEG00000012363)	ZNF879 (ENSDLEG00000012354)	ENSDLEG00000012347	GRM6 (ENSDLEG00000012287)	ZNF454 (ENSDLEG00000012270)	ZFP2 (ENSDLEG00000012263)	ZNF354B (ENSDLEG00000012249)	JMJD4 (ENSDLEG00000012232) #19	SNAP47 (ENSDLEG00000012222) #20	PRSS38 (ENSDLEG00000012200)	WNT9A (ENSDLEG00000012170) #21	WNT3A (ENSDLEG00000012150) #22	ENSDLEG00000012142	ENSDLEG00000012123 #24	MRPL55 (ENSDLEG00000012111) #25	GUK1 (ENSDLEG00000012045) #26	GJC2 (ENSDLEG00000012033) #27	IBA57 (ENSDLEG00000012021) #28	ENSDLEG00000012007	ENSDLEG00000011998	RNF187 (ENSDLEG00000010320) #35	H2BC26 (ENSDLEG00000010308) #33	H2AC25 (ENSDLEG00000010298) #32	ENSDLEG00000010292	TRIM17 (ENSDLEG00000010270) #31	TRIM11 (ENSDLEG00000010252) #30	ENSDLEG00000010241
Narwhal	MODERN SPECIES	298	RUFY1 (ENSMMNG00015003190)	ADAMTS2 (ENSMMNG00015003260)	ENSMMNG00015003278	ZNF354C (ENSMMNG00015003290)	ZNF879 (ENSMMNG00015003310)	ENSMMNG00015003325	GRM6 (ENSMMNG00015003345)	ZNF454 (ENSMMNG00015003376)	ZFP2 (ENSMMNG00015003397)	ZNF354B (ENSMMNG00015003424)	JMJD4 (ENSMMNG00015003436) #19	SNAP47 (ENSMMNG00015003455) #20	ENSMMNG00015003473	PRSS38 (ENSMMNG00015003487)	WNT9A (ENSMMNG00015003510) #21	WNT3A (ENSMMNG00015003522) #22	ENSMMNG00015003538 #23	C1orf35 (ENSMMNG00015003552) #24	MRPL55 (ENSMMNG00015003572) #25	GUK1 (ENSMMNG00015003608) #26	GJC2 (ENSMMNG00015003654) #27	IBA57 (ENSMMNG00015003669) #28	ENSMMNG00015003686	ENSMMNG00015003699	RNF187 (ENSMMNG00015004520) #35	H2BC26 (ENSMMNG00015004531) #33	H2AC25 (ENSMMNG00015000012) #32	ENSMMNG00015000023	TRIM17 (ENSMMNG00015000054) #31	TRIM11 (ENSMMNG00015000075) #30	ENSMMNG00015000101
Pecora	ANCESTRAL SPECIES		ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.ld #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162181
Yarkand deer	MODERN SPECIES	32	TSSK6 (ENSCHYG00000012255)	NDUFA13 (ENSCHYG00000012188)	YJEFN3 (ENSCHYG00000012151)	CILP2 (ENSCHYG00000012104)	PBX4 (ENSCHYG00000011654)	LPAR2 (ENSCHYG00000011542)	GMIP (ENSCHYG00000011272)	ATP13A1 (ENSCHYG00000010816)	ENSCHYG00000010766	ZNF354B (ENSCHYG00000010723)	ENSCHYG00000010707	JMJD4 (ENSCHYG00000010663) #19	SNAP47 (ENSCHYG00000010619) #20	PRSS38 (ENSCHYG00000010560)	WNT9A (ENSCHYG00000010511) #21	WNT3A (ENSCHYG00000010445) #22	ENSCHYG00000010399 #23	C1orf35 (ENSCHYG00000010289) #24	MRPL55 (ENSCHYG00000010212) #25	GUK1 (ENSCHYG00000010059) #26	GJC2 (ENSCHYG00000010036) #27	IBA57 (ENSCHYG00000010014) #28	ENSCHYG00000009985	ENSCHYG00000009774 #29	ENSCHYG00000009620 #29	TRIM11 (ENSCHYG00000009542) #30	TRIM17 (ENSCHYG00000009461) #31	H3-4 (ENSCHYG00000009438)	H2AC25 (ENSCHYG00000009419) #32	ENSCHYG00000009390 #34	RNF187 (ENSCHYG00000009353) #35
Percora_a	ANCESTRAL SPECIES		ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.ld #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162181
Siberian musk deer	MODERN SPECIES	1213									ENSMMSG00000022637	ZNF354B (ENSMMSG00000022631)	JMJD4 (ENSMMSG00000022617) #19	SNAP47 (ENSMMSG00000022600) #20	ENSMMSG00000022591	PRSS38 (ENSMMSG00000022575)	WNT9A (ENSMMSG00000022550) #21	WNT3A (ENSMMSG00000022541) #22	ARF1 (ENSMMSG00000022533) #23	C1orf35 (ENSMMSG00000022529) #24	MRPL55 (ENSMMSG00000022520) #25	GUK1 (ENSMMSG00000022498) #26	GJC2 (ENSMMSG00000022491) #27	IBA57 (ENSMMSG00000022482) #28	OBSCN (ENSMMSG00000020369) #29	TRIM11 (ENSMMSG00000020106) #30	TRIM17 (ENSMMSG00000020070) #31	H3-4 (ENSMMSG00000020062)	H2AC25 (ENSMMSG00000020054) #32	H2BC26 (ENSMMSG00000020045) #33	RNF187 (ENSMMSG00000020017) #35	ZNF454 (ENSMMSG00000019980)	GRM6 (ENSMMSG00000019933)
Bovidae	ANCESTRAL SPECIES		ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.kd.b #29	ENSGT00940000154756.A.ld #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b
Bovinae	ANCESTRAL SPECIES	34	ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.kd.b.a.a #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743
American bison	MODERN SPECIES	3165	GATAD2A (ENSBBBG00000015939)	TSSK6 (ENSBBBG00000015942)	NDUFA13 (ENSBBBG00000015950)	YJEFN3 (ENSBBBG00000015957)	CILP2 (ENSBBBG00000015975)	PBX4 (ENSBBBG00000015984)	LPAR2 (ENSBBBG00000015996)	GMIP (ENSBBBG00000016022)	ATP13A1 (ENSBBBG00000003990)	ENSBBBG00000016056	ZNF354B (ENSBBBG00000016063)	JMJD4 (ENSBBBG00000016083) #19	SNAP47 (ENSBBBG00000007139) #20	PRSS38 (ENSBBBG00000016108)	WNT9A (ENSBBBG00000016116) #21	WNT3A (ENSBBBG00000016145) #22	ARF1 (ENSBBBG00000016170) #23	C1orf35 (ENSBBBG00000016183) #24	MRPL55 (ENSBBBG00000004037) #25	GUK1 (ENSBBBG00000004041) #26	IBA57 (ENSBBBG00000016303) #28	ENSBBBG00000016321	ENSBBBG00000016327 #29	ENSBBBG00000016344 #29	ENSBBBG00000016350 #29	ENSBBBG00000016357 #29	ENSBBBG00000016369 #29	TRIM11 (ENSBBBG00000016378) #30	TRIM17 (ENSBBBG00000016399) #31	H3-4 (ENSBBBG00000004059)
Bos	ANCESTRAL SPECIES	34	ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.kd.b.a.a.b #29	ENSGT00390000009312.n.b	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b
Bos_a	ANCESTRAL SPECIES	29	ENSGT00410000025695.a	ENSGT00390000012198	ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.kd.b.a.a.a #29	ENSGT00390000009312.n.b	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b
Domestic yak	MODERN SPECIES	27	GATAD2A (ENSBGRG00000001936)	TSSK6 (ENSBGRG00000001976)	YJEFN3 (ENSBGRG00000002015)	CILP2 (ENSBGRG00000002130)	PBX4 (ENSBGRG00000002159)	LPAR2 (ENSBGRG00000002227)	GMIP (ENSBGRG00000002278)	ATP13A1 (ENSBGRG00000002465)	ENSBGRG00000002896	ZNF354B (ENSBGRG00000002905)	JMJD4 (ENSBGRG00000002925) #19	SNAP47 (ENSBGRG00000002943) #20	PRSS38 (ENSBGRG00000002987)	WNT9A (ENSBGRG00000003023) #21	ENSBGRG00000003044	WNT3A (ENSBGRG00000003066) #22	ARF1 (ENSBGRG00000003083) #23	C1orf35 (ENSBGRG00000003092) #24	MRPL55 (ENSBGRG00000003109) #25	GUK1 (ENSBGRG00000003137) #26	GJC2 (ENSBGRG00000003164) #27	IBA57 (ENSBGRG00000003172) #28	ENSBGRG00000003375	TRIM11 (ENSBGRG00000003387) #30	TRIM17 (ENSBGRG00000003402) #31	ENSBGRG00000003415	H3-4 (ENSBGRG00000003421)	H2AC25 (ENSBGRG00000003429) #32	RNF187 (ENSBGRG00000003438) #35	ENSBGRG00000003452	ZNF454 (ENSBGRG00000003460)
Wild yak	MODERN SPECIES	610											ZNF354B (ENSBMUG00000013110)	JMJD4 (ENSBMUG00000013129) #19	SNAP47 (ENSBMUG00000013160) #20	PRSS38 (ENSBMUG00000013170)	WNT9A (ENSBMUG00000013188) #21	WNT3A (ENSBMUG00000013208) #22	ARF1 (ENSBMUG00000013231) #23	C1orf35 (ENSBMUG00000013244) #24	MRPL55 (ENSBMUG00000013341) #25	GUK1 (ENSBMUG00000013370) #26	GJC2 (ENSBMUG00000013389) #27	IBA57 (ENSBMUG00000013400) #28	ENSBMUG00000013430 #29	ENSBMUG00000013541 #29	ENSBMUG00000013557 #29
Bos_b	ANCESTRAL SPECIES	36	ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.kd.b.a.a.b #29	ENSGT00390000009312.n.b	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00940000162743
Cow	MODERN SPECIES	26	GATAD2A (ENSBTAG00000003034)	TSSK6 (ENSBTAG00000006649)	NDUFA13 (ENSBTAG00000007812)	YJEFN3 (ENSBTAG00000014968)	CILP2 (ENSBTAG00000014969)	PBX4 (ENSBTAG00000009975)	LPAR2 (ENSBTAG00000004652)	GMIP (ENSBTAG00000015144)	ATP13A1 (ENSBTAG00000007128)	ENSBTAG00000052161	ZNF354B (ENSBTAG00000017123)	JMJD4 (ENSBTAG00000004191) #19	SNAP47 (ENSBTAG00000004188) #20	PRSS38 (ENSBTAG00000013977)	WNT9A (ENSBTAG00000020267) #21	WNT3A (ENSBTAG00000039397) #22	ARF1 (ENSBTAG00000007725) #23	C7H1orf35 (ENSBTAG00000020720) #24	MRPL55 (ENSBTAG00000020721) #25	GUK1 (ENSBTAG00000014775) #26	GJC2 (ENSBTAG00000014916) #27	IBA57 (ENSBTAG00000014918) #28	ENSBTAG00000049190 #29	ENSBTAG00000051744 #29	ENSBTAG00000040028 #29	ENSBTAG00000007820	TRIM11 (ENSBTAG00000039246) #30	TRIM17 (ENSBTAG00000018673) #31	H3-4 (ENSBTAG00000055153)	H2AC25 (ENSBTAG00000037964) #32	H2BC26 (ENSBTAG00000053467) #33
Hybrid Bos Indicus	MODERN SPECIES	26	CILP2 (ENSBIXG00005011569)	PBX4 (ENSBIXG00005011533)	LPAR2 (ENSBIXG00005011498)	GMIP (ENSBIXG00005011455)	ATP13A1 (ENSBIXG00005011383)	ENSBIXG00005011324	ZNF354B (ENSBIXG00005011307)	ENSBIXG00005000504	JMJD4 (ENSBIXG00005005916) #19	SNAP47 (ENSBIXG00005011285) #20	ENSBIXG00005011259	ENSBIXG00005001061	ENSBIXG00005011249	PRSS38 (ENSBIXG00005011238)	WNT9A (ENSBIXG00005006783) #21	WNT3A (ENSBIXG00005011222) #22	ARF1 (ENSBIXG00005011212) #23	C1orf35 (ENSBIXG00005001035) #24	MRPL55 (ENSBIXG00005011160) #25	GUK1 (ENSBIXG00005011045) #26	IBA57 (ENSBIXG00005010975) #28	ENSBIXG00005010951	OBSCN (ENSBIXG00005010529) #29	ENSBIXG00005029278	TRIM11 (ENSBIXG00005029289) #30	TRIM17 (ENSBIXG00005029306) #31	H3-4 (ENSBIXG00005029320)	ENSBIXG00005029327	H2AC25 (ENSBIXG00005029330) #32	H2BC26 (ENSBIXG00005029334) #33	RNF187 (ENSBIXG00005029336) #35
Caprinae	ANCESTRAL SPECIES	32	ENSGT00390000004097.a	ENSGT00940000160464	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643.a	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a.b	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.ld #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743
Goat	MODERN SPECIES	26	GATAD2A (ENSCHIG00000022449)	TSSK6 (ENSCHIG00000012857)	NDUFA13 (ENSCHIG00000005106)	YJEFN3 (ENSCHIG00000022695)	CILP2 (ENSCHIG00000016599)	PBX4 (ENSCHIG00000020490)	LPAR2 (ENSCHIG00000026267)	GMIP (ENSCHIG00000006935)	ATP13A1 (ENSCHIG00000027146)	ENSCHIG00000027175	ZNF354B (ENSCHIG00000024384)	JMJD4 (ENSCHIG00000001908) #19	SNAP47 (ENSCHIG00000025042) #20	ENSCHIG00000004906	WNT9A (ENSCHIG00000009523) #21	WNT3A (ENSCHIG00000016159) #22	ARF1 (ENSCHIG00000010924) #23	C1orf35 (ENSCHIG00000020666) #24	MRPL55 (ENSCHIG00000024153) #25	GUK1 (ENSCHIG00000020301) #26	GJC2 (ENSCHIG00000012045) #27	IBA57 (ENSCHIG00000025813) #28	OBSCN (ENSCHIG00000026141) #29	TRIM11 (ENSCHIG00000010660) #30	TRIM17 (ENSCHIG00000017072) #31	H3-4 (ENSCHIG00000008243)	H2AC25 (ENSCHIG00000006649) #32	H2BC26 (ENSCHIG00000009284) #33	RNF187 (ENSCHIG00000012732) #35	ENSCHIG00000025835	ZFP2 (ENSCHIG00000010314)
Rambouillet Sheep	MODERN SPECIES	21	MAU2 (ENSOARG00020019838)	GATAD2A (ENSOARG00020019767)	TSSK6 (ENSOARG00020019749)	NDUFA13 (ENSOARG00020019709)	YJEFN3 (ENSOARG00020019633)	CILP2 (ENSOARG00020019527)	LPAR2 (ENSOARG00020019376)	GMIP (ENSOARG00020019185)	ATP13A1 (ENSOARG00020019002)	ENSOARG00020018960	ZNF354B (ENSOARG00020018905)	SNAP47 (ENSOARG00020018819) #20	PRSS38 (ENSOARG00020018766)	WNT9A (ENSOARG00020018708) #21	ENSOARG00020018666	WNT3A (ENSOARG00020018613) #22	ARF1 (ENSOARG00020018572) #23	C1orf35 (ENSOARG00020018506) #24	MRPL55 (ENSOARG00020018459) #25	GUK1 (ENSOARG00020018354) #26	GJC2 (ENSOARG00020018337) #27	IBA57 (ENSOARG00020018299) #28	TRIM11 (ENSOARG00020017090) #30	TRIM17 (ENSOARG00020017007) #31	H3-4 (ENSOARG00020016979)	H2AC25 (ENSOARG00020016951) #32	HIST3H2BB (ENSOARG00020016921) #33	RNF187 (ENSOARG00020016886) #35	ZFP2 (ENSOARG00020016872)	ZNF454 (ENSOARG00020016811)	GRM6 (ENSOARG00020016554)
Laurasiatheria_b	ANCESTRAL SPECIES	24	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246 #7	ENSGT01090000260045.C.e.a.b	ENSGT01090000260086.C.a.a ##8	ENSGT01090000260086.C.a.b.b ##8	ENSGT01090000260044.D.b.a.b ##11	ENSGT01090000260086.C.a.b.a.a ##8	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31
Carnivora	ANCESTRAL SPECIES	28												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Felidae	ANCESTRAL SPECIES	6	ENSGT01100000263517.b.d.m.a.b	ENSGT00940000154294.k.b	ENSGT00940000154461	ENSGT00940000154294.k.a.b	ENSGT01030000234669.A	ENSGT01090000260018.D.d.b	ENSGT01090000260018.D.d.a	ENSGT01090000260018.A.a.b.a	ENSGT00940000160338	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000158017.d	ENSGT01090000259995.a.a.b.a.b.a
Cat	MODERN SPECIES		TRIM7 (ENSFCAG00000003037)	ENSFCAG00000029535	ENSFCAG00000024505	ENSFCAG00000030220	ENSFCAG00000046579	ENSFCAG00000041675	ENSFCAG00000047273	ZFP62 (ENSFCAG00000029931)	MGAT1 (ENSFCAG00000015344)	ENSFCAG00000051518	JMJD4 (ENSFCAG00000015612) #19	SNAP47 (ENSFCAG00000015614) #20	ENSFCAG00000022992	PRSS38 (ENSFCAG00000002338)	WNT9A (ENSFCAG00000046271) #21	WNT3A (ENSFCAG00000036791) #22	ARF1 (ENSFCAG00000029374) #23	CA1H1orf35 (ENSFCAG00000022579) #24	MRPL55 (ENSFCAG00000015199) #25	GUK1 (ENSFCAG00000025872) #26	GJC2 (ENSFCAG00000007130) #27	IBA57 (ENSFCAG00000000672) #28	TRIM11 (ENSFCAG00000046756) #30	TRIM17 (ENSFCAG00000029709) #31	H2AC25 (ENSFCAG00000024530) #32	H2BC26 (ENSFCAG00000032040) #33	H2BC27P (ENSFCAG00000024427) #34	RNF187 (ENSFCAG00000042348) #35	ENSFCAG00000051175	ENSFCAG00000052462 #36	ENSFCAG00000027675
Panthera	ANCESTRAL SPECIES	6	ENSGT00950000183007.a.b.g.a.b.b.a	ENSGT01100000263517.b.d.m.a.b	ENSGT00940000154294.k.b	ENSGT00940000154461	ENSGT00940000154294.k.a.b	ENSGT01030000234669.A	ENSGT01090000260018.D.d.b	ENSGT01090000260018.A.a.b.a	ENSGT00940000160338	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00940000161967 #13	ENSGT00940000162415 #12	ENSGT01100000263548.b.a.a.a.a.a
Tiger	MODERN SPECIES	423													SNAP47 (ENSPTIG00000011912) #20	PRSS38 (ENSPTIG00000011289)	WNT9A (ENSPTIG00000010994) #21	WNT3A (ENSPTIG00000010321) #22	ARF1 (ENSPTIG00000009396) #23	MRPL55 (ENSPTIG00000008780) #25	GUK1 (ENSPTIG00000000015) #26	IBA57 (ENSPTIG00000020853) #28	ENSPTIG00000014510 #30	TRIM17 (ENSPTIG00000012749) #31	H2AC25 (ENSPTIG00000005738) #32	H2BC26 (ENSPTIG00000005729) #33
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00950000183007.a.b.g.a.b.b.a	ENSGT01100000263517.b.d.m.a.b	ENSGT00940000154294.k.b	ENSGT00940000154461	ENSGT00940000154294.k.a.b	ENSGT01030000234669.A	ENSGT01090000260018.D.d.b	ENSGT01090000260018.A.a.b.a	ENSGT00940000160338	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00940000161967 #13	ENSGT00940000162415 #12	ENSGT01100000263548.b.a.a.a.a.a
lion	MODERN SPECIES		ENSPLOG00000002605	TRIM52 (ENSPLOG00000002622)	RACK1 (ENSPLOG00000002660)	TRIM41 (ENSPLOG00000002727)	TRIM7 (ENSPLOG00000002799)	ENSPLOG00000002848	ENSPLOG00000002893	ENSPLOG00000002906	ZFP62 (ENSPLOG00000002927)	MGAT1 (ENSPLOG00000002940)	JMJD4 (ENSPLOG00000002956) #19	SNAP47 (ENSPLOG00000002987) #20	ENSPLOG00000003011	PRSS38 (ENSPLOG00000003023)	WNT9A (ENSPLOG00000000004) #21	WNT3A (ENSPLOG00000000013) #22	ARF1 (ENSPLOG00000000016) #23	C1orf35 (ENSPLOG00000000019) #24	MRPL55 (ENSPLOG00000000024) #25	GUK1 (ENSPLOG00000000033) #26	GJC2 (ENSPLOG00000000039) #27	IBA57 (ENSPLOG00000000043) #28	ENSPLOG00000000051 #29	ENSPLOG00000000078 #29	TRIM11 (ENSPLOG00000000094) #30	TRIM17 (ENSPLOG00000000102) #31	H2AC25 (ENSPLOG00000000118) #32	H2BC26 (ENSPLOG00000000122) #33	RNF187 (ENSPLOG00000000130) #35	ENSPLOG00000000153 #36	ENSPLOG00000000167 #36
leopard	DUPLICATION
leopard	MODERN SPECIES	209													SNAP47 (ENSPPRG00000002689) #20	PRSS38 (ENSPPRG00000003250)	WNT9A (ENSPPRG00000003274) #21	WNT3A (ENSPPRG00000003561) #22	ENSPPRG00000022172 #22	ARF1 (ENSPPRG00000003870) #23	C1orf35 (ENSPPRG00000004048) #24	MRPL55 (ENSPPRG00000004595) #25	GUK1 (ENSPPRG00000005299) #26	GJC2 (ENSPPRG00000010713) #27	IBA57 (ENSPPRG00000005609) #28	TRIM11 (ENSPPRG00000010008) #30	TRIM17 (ENSPPRG00000010041) #31	H2AC25 (ENSPPRG00000010830) #32	H2BC26 (ENSPPRG00000010835) #33
leopard	MODERN SPECIES	209												SNAP47 (ENSPPRG00000002689) #20	PRSS38 (ENSPPRG00000003250)	WNT9A (ENSPPRG00000003274) #21	WNT3A (ENSPPRG00000003561) #22	ENSPPRG00000022172 #22	ARF1 (ENSPPRG00000003870) #23	C1orf35 (ENSPPRG00000004048) #24	MRPL55 (ENSPPRG00000004595) #25	GUK1 (ENSPPRG00000005299) #26	GJC2 (ENSPPRG00000010713) #27	IBA57 (ENSPPRG00000005609) #28	TRIM11 (ENSPPRG00000010008) #30	TRIM17 (ENSPPRG00000010041) #31	H2AC25 (ENSPPRG00000010830) #32	H2BC26 (ENSPPRG00000010835) #33
Caniformia	ANCESTRAL SPECIES	34												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Canidae	ANCESTRAL SPECIES	64	ENSGT00940000163320	ENSGT01090000260086.C.a.a ##8	ENSGT01090000260045.C.e.a.b	ENSGT00940000162246 #7	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT01090000259995.b.b.b	ENSGT01090000259995.b.b.a.a.b.j.a	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT00940000162666 #9	ENSGT01090000260086.E.b #8	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815.c #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Red fox	MODERN SPECIES	291														PRSS38 (ENSVVUG00000030382)	WNT9A (ENSVVUG00000030381) #21	WNT3A (ENSVVUG00000030380) #22	ARF1 (ENSVVUG00000030379)	ENSVVUG00000030378 #24	ENSVVUG00000030377 #26	ENSVVUG00000030376 #27	IBA57 (ENSVVUG00000030375) #28	TRIM11 (ENSVVUG00000030373) #30	TRIM17 (ENSVVUG00000030372) #31	H2AC25 (ENSVVUG00000030371) #32	H2BC26 (ENSVVUG00000030370) #33	ENSVVUG00000030369 #34	ENSVVUG00000030367 #36	ENSVVUG00000030366 #36
Canis_lupus	ANCESTRAL SPECIES	51	ENSGT00940000163320	ENSGT01090000260045.C.e.a.b	ENSGT00940000162246 #7	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT01090000259995.b.b.b	ENSGT01090000259995.b.b.a.a.b.j.a	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b	ENSGT00390000000053.t	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT00940000162666 #9	ENSGT01090000260086.E.b #8	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b.jb #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815.c #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.ed #29	ENSGT00940000154756.A.fd #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT00940000160426	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997.g #36
Dog	MODERN SPECIES	5	TRIM58 (ENSCAFG00845008506) #7	OR2W3 (ENSCAFG00845008479)	OR2AJ7 (ENSCAFG00845008461)	ENSCAFG00845008436	OR2L5C (ENSCAFG00845008412)	OR2L17 (ENSCAFG00845008368)	ENSCAFG00845008351	OR2L3B (ENSCAFG00845008326)	ENSCAFG00845008294	ENSCAFG00845008271 #9	ENSCAFG00845008246 #8	JMJD4 (ENSCAFG00845008215) #19	SNAP47 (ENSCAFG00845008129) #20	PRSS38 (ENSCAFG00845008050)	WNT9A (ENSCAFG00845008006) #21	WNT3A (ENSCAFG00845007960) #22	ARF1 (ENSCAFG00845007924) #23	C1orf35 (ENSCAFG00845007876) #24	MRPL55 (ENSCAFG00845007834) #25	GUK1 (ENSCAFG00845007785) #26	GJC2 (ENSCAFG00845007738) #27	IBA57 (ENSCAFG00845007710) #28	ENSCAFG00845007646 #29	ENSCAFG00845007619 #29	ENSCAFG00845007586 #29	ENSCAFG00845007457 #29	TRIM17 (ENSCAFG00845007329) #30	HIST3H2A (ENSCAFG00845007204) #32	H2BC26 (ENSCAFG00845007167) #33	ENSCAFG00845007128 #34	ENSCAFG00845007077 #35
Dingo	MODERN SPECIES	372	OR11L1 (ENSCAFG00020005628)	TRIM58 (ENSCAFG00020005629) #7	OR2W3 (ENSCAFG00020005631)	OR2AJ1 (ENSCAFG00020005638)	ENSCAFG00020005642	ENSCAFG00020005647	ENSCAFG00020005648	ENSCAFG00020005654	OR13G1 (ENSCAFG00020005659) #9	OR6F1 (ENSCAFG00020005660) #8	ENSCAFG00020005667	JMJD4 (ENSCAFG00020005670) #19	SNAP47 (ENSCAFG00020005687) #20	PRSS38 (ENSCAFG00020005690)	WNT9A (ENSCAFG00020005694) #21	WNT3A (ENSCAFG00020005706) #22	ARF1 (ENSCAFG00020005724) #23	ENSCAFG00020005738 #24	MRPL55 (ENSCAFG00020005742) #25	ENSCAFG00020005747 #26	IBA57 (ENSCAFG00020005762) #28	ENSCAFG00020005770 #29	ENSCAFG00020005782 #29	ENSCAFG00020005800 #29	ENSCAFG00020005812 #29	ENSCAFG00020005814 #29	ENSCAFG00020005817 #29	ENSCAFG00020005824 #29	TRIM11 (ENSCAFG00020005850) #30	TRIM17 (ENSCAFG00020005854) #31	ENSCAFG00020005861
Caniformia_b	ANCESTRAL SPECIES	41												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.gd.b #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Mustelinae	ANCESTRAL SPECIES	159												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.gd.b #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
American mink	MODERN SPECIES	522												JMJD4 (ENSNVIG00000023741) #19	SNAP47 (ENSNVIG00000023746) #20	PRSS38 (ENSNVIG00000023749)	WNT9A (ENSNVIG00000023751) #21	WNT3A (ENSNVIG00000023755) #22	ARF1 (ENSNVIG00000000852) #23	C1orf35 (ENSNVIG00000000876) #24	MRPL55 (ENSNVIG00000000896) #25	GUK1 (ENSNVIG00000000938) #26	GJC2 (ENSNVIG00000001001) #27	IBA57 (ENSNVIG00000001008) #28	ENSNVIG00000001052 #29	ENSNVIG00000001101 #29	TRIM11 (ENSNVIG00000001136) #30	TRIM17 (ENSNVIG00000001165) #31	H3-4 (ENSNVIG00000001199)	H2AC25 (ENSNVIG00000001203) #32	H2BC26 (ENSNVIG00000001207) #33	ENSNVIG00000001218 #34
Ferret	MODERN SPECIES	525												JMJD4 (ENSMPUG00000000927) #19	SNAP47 (ENSMPUG00000000929) #20	PRSS38 (ENSMPUG00000000932)	WNT9A (ENSMPUG00000000947) #21	WNT3A (ENSMPUG00000000960) #22	ARF1 (ENSMPUG00000000962) #23	C1orf35 (ENSMPUG00000000996) #24	MRPL55 (ENSMPUG00000001004) #25	GUK1 (ENSMPUG00000001011) #26	IBA57 (ENSMPUG00000001035) #28	ENSMPUG00000001039 #29	ENSMPUG00000001077 #29	ENSMPUG00000001079	TRIM11 (ENSMPUG00000001081) #30	H3-4 (ENSMPUG00000018529)	H2AC25 (ENSMPUG00000018534) #32	H2BC26 (ENSMPUG00000018539) #33	ENSMPUG00000001083 #34	ENSMPUG00000001085 #35	ENSMPUG00000001088 #36
Ursidae	ANCESTRAL SPECIES	59												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309.a #25	ENSGT00940000155815 #26	ENSGT00940000154756.A.gd.b #29	ENSGT00390000006465 #28	ENSGT00940000154756.A.hd #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36
Giant Panda	MODERN SPECIES	13	ENSAMEG00000019598	ENSAMEG00000019593	OR2T1 (ENSAMEG00000019571)	OR2T6 (ENSAMEG00000019566)	ENSAMEG00000028797	ENSAMEG00000019418	ENSAMEG00000028922	OR14C36 (ENSAMEG00000013199)	ENSAMEG00000029726	ENSAMEG00000030449	ENSAMEG00000029442 #9	JMJD4 (ENSAMEG00000018153) #19	SNAP47 (ENSAMEG00000009252) #20	PRSS38 (ENSAMEG00000007189)	WNT9A (ENSAMEG00000027387) #21	WNT3A (ENSAMEG00000004256) #22	ARF1 (ENSAMEG00000030995) #23	C1orf35 (ENSAMEG00000016295) #24	ENSAMEG00000016292 #25	ENSAMEG00000016280 #26	ENSAMEG00000016258 #29	ENSAMEG00000023921 #28	ENSAMEG00000023964 #30	TRIM17 (ENSAMEG00000014312) #31	H3-4 (ENSAMEG00000031491)	H2AW (ENSAMEG00000025465) #32	H2BC26 (ENSAMEG00000026668) #33	ENSAMEG00000028006 #34	ENSAMEG00000024010	ENSAMEG00000014310 #35
Ursus	ANCESTRAL SPECIES	192											ENSGT00940000159380 #19	ENSGT00940000169575	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309.a #25	ENSGT00940000155815 #26	ENSGT00390000006465 #28	ENSGT00940000154756.A.hd #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.f	ENSGT01020000230360.c.b.a.b.b.d	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997 #36	ENSGT01030000234553.b.b.d.c.a.d
Polar bear	MODERN SPECIES	314											JMJD4 (ENSUMAG00000001003) #19	ENSUMAG00000000990	SNAP47 (ENSUMAG00000000986) #20	PRSS38 (ENSUMAG00000000967)	WNT9A (ENSUMAG00000000953) #21	WNT3A (ENSUMAG00000000923) #22	ARF1 (ENSUMAG00000000918) #23	MRPL55 (ENSUMAG00000000905) #25	GUK1 (ENSUMAG00000000901) #26	ENSUMAG00000000883 #29	ENSUMAG00000000847 #29	TRIM17 (ENSUMAG00000000819) #31	ENSUMAG00000000803	ENSUMAG00000000792	H2BC26 (ENSUMAG00000000733) #33	ENSUMAG00000000715 #34	ENSUMAG00000000704 #35	ENSUMAG00000000672 #36	ENSUMAG00000000653 #36	ENSUMAG00000000615
American black bear	MODERN SPECIES	5325															WNT9A (ENSUAMG00000010026) #21	WNT3A (ENSUAMG00000010006) #22
Laurasiatheria_c	ANCESTRAL SPECIES	29	ENSGT00940000162246 #7	ENSGT01090000260045.C.e.a.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000158134.A #10	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT01100000263474.a.b.b.e.b.a.a #33	ENSGT00390000009510 #35	ENSGT00940000163997 #36	ENSGT01030000234553.b.b.d.c.a
Equus	ANCESTRAL SPECIES	6												ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263474.a.b.b.e.b.a.b #34	ENSGT00390000009510 #35	ENSGT00940000163997.m #36	ENSGT01030000234553.b.b.d.d	ENSGT00940000161967 #13	ENSGT00940000162415 #12
Horse	MODERN SPECIES	5												JMJD4 (ENSECAG00000021407) #19	SNAP47 (ENSECAG00000020954) #20	PRSS38 (ENSECAG00000020942)	WNT9A (ENSECAG00000020178) #21	WNT3A (ENSECAG00000028812) #22	ARF1 (ENSECAG00000032327) #23	GUK1 (ENSECAG00000019280) #26	ENSECAG00000059239 #24	GJC2 (ENSECAG00000037673) #27	IBA57 (ENSECAG00000006335) #28	OBSCN (ENSECAG00000016720) #29	TRIM11 (ENSECAG00000016373) #30	TRIM17 (ENSECAG00000039891) #31	ENSECAG00000059949 #34	H2BC26 (ENSECAG00000048080) #33	RNF187 (ENSECAG00000016200) #35	ENSECAG00000040368 #36	ENSECAG00000032464 #36	ENSECAG00000033206	ZNF496 (ENSECAG00000015844) #13
Donkey	MODERN SPECIES	29											JMJD4 (ENSEASG00005017516) #19	SNAP47 (ENSEASG00005017519) #20	ENSEASG00005023983	PRSS38 (ENSEASG00005017526)	WNT9A (ENSEASG00005017530) #21	WNT3A (ENSEASG00005010564) #22	ENSEASG00005036953	C1orf35 (ENSEASG00005017537) #24	MRPL55 (ENSEASG00005024877) #25	GUK1 (ENSEASG00005017539) #26	GJC2 (ENSEASG00005017541) #27	ENSEASG00005033564 #28	OBSCN (ENSEASG00005017625) #29	TRIM11 (ENSEASG00005017954) #30	TRIM17 (ENSEASG00005017955) #31	ENSEASG00005035131	H2BC26 (ENSEASG00005026831) #33	ENSEASG00005029469	ENSEASG00005017961 #35	ENSEASG00005024868 #36	ENSEASG00005035367 #36
Chiroptera	ANCESTRAL SPECIES	75	ENSGT00390000010671	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246 #7	ENSGT01090000260045.C.e.a.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000158134.A #10	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT00390000009510 #35	ENSGT00940000163997 #36	ENSGT01030000234553.b.b.d.c.a
Megabat	MODERN SPECIES	8213																WNT3A (ENSPVAG00000002699) #22
Microchiroptera	ANCESTRAL SPECIES	63	ENSGT00390000010671	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246 #7	ENSGT01090000260045.C.e.a.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000158134.A #10	ENSGT01090000260044.A.b.a.a.a.b #11	ENSGT00940000162415 #12	ENSGT00940000161967 #13	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000160371 #30	ENSGT00940000162155 #31	ENSGT01100000263514.A.e.b	ENSGT00940000153092.a.a.c.b #32	ENSGT00390000009510 #35	ENSGT00940000163997 #36	ENSGT01030000234553.b.b.d.c.a
Microbat	MODERN SPECIES	1239								OR2B11 (ENSMLUG00000014384) #11	NLRP3 (ENSMLUG00000014375) #12	ZNF496 (ENSMLUG00000026878) #13	ENSMLUG00000024170 #19	ENSMLUG00000009770	SNAP47 (ENSMLUG00000013515) #20	PRSS38 (ENSMLUG00000012972)	WNT9A (ENSMLUG00000013086) #21	ENSMLUG00000026050 #22	ENSMLUG00000007020 #23	MRPL55 (ENSMLUG00000007037) #25	GUK1 (ENSMLUG00000013049) #26	GJC2 (ENSMLUG00000006940) #27	IBA57 (ENSMLUG00000008724) #28	ENSMLUG00000025341 #29	ENSMLUG00000013117 #29	ENSMLUG00000027104 #29	TRIM11 (ENSMLUG00000009420) #30	RNF187 (ENSMLUG00000002610) #35	TRIM58 (ENSMLUG00000004402) #7	OR2W3 (ENSMLUG00000005916)	ENSMLUG00000027552	SH3BP5L (ENSMLUG00000002392)	ZNF692 (ENSMLUG00000002398)
Greater horseshoe bat	MODERN SPECIES	16	HNRNPH1 (ENSRFEG00010021042)	RUFY1 (ENSRFEG00010020977)	ENSRFEG00010020957	ENSRFEG00010020942	ADAMTS2 (ENSRFEG00010020822)	ZNF354C (ENSRFEG00010020767)	ZNF879 (ENSRFEG00010020752)	GRM6 (ENSRFEG00010020725)	ZNF454 (ENSRFEG00010020708)	ZFP2 (ENSRFEG00010020696)	ENSRFEG00010020667	JMJD4 (ENSRFEG00010020639) #19	SNAP47 (ENSRFEG00010020620) #20	PRSS38 (ENSRFEG00010020586)	WNT9A (ENSRFEG00010020564) #21	WNT3A (ENSRFEG00010020529) #22	ENSRFEG00010020502 #23	ENSRFEG00010020459 #24	MRPL55 (ENSRFEG00010020427) #25	ENSRFEG00010020344 #26	GJC2 (ENSRFEG00010020305) #27	IBA57 (ENSRFEG00010020284) #28	OBSCN (ENSRFEG00010012968) #29	TRIM11 (ENSRFEG00010012738) #30	TRIM17 (ENSRFEG00010012551) #31	H3-4 (ENSRFEG00010012529)	H2AC25 (ENSRFEG00010012511) #32	RNF187 (ENSRFEG00010012412) #35	ENSRFEG00010012392 #36	ENSRFEG00010012356	ZNF496 (ENSRFEG00010012279) #13
Atlantogenata	ANCESTRAL SPECIES	148											ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000155138.f	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00390000016274
Afrotheria	ANCESTRAL SPECIES	186											ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000155138.f	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00390000016274
Tenrec	MODERN SPECIES	4742																ENSETEG00000015186 #22
Afrotheria_a	ANCESTRAL SPECIES	187											ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000155138.f	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00390000016274
Elephant	MODERN SPECIES	27	ZNF496 (ENSLAFG00000013003) #13	ENSLAFG00000031629	ENSLAFG00000020656 #36	ENSLAFG00000031204	ENSLAFG00000027457 #32	ENSLAFG00000018209 #35	ENSLAFG00000026359 #32	H3-4 (ENSLAFG00000031137)	TRIM11 (ENSLAFG00000017039) #30	ENSLAFG00000032186 #31	JMJD4 (ENSLAFG00000022162) #19	SNAP47 (ENSLAFG00000028954) #20	PRSS38 (ENSLAFG00000005934)	ENSLAFG00000031393	WNT9A (ENSLAFG00000017352) #21	ENSLAFG00000031881 #22	ARF1 (ENSLAFG00000006987) #23	C1orf35 (ENSLAFG00000003007) #24	MRPL55 (ENSLAFG00000003008) #25	GUK1 (ENSLAFG00000026666) #26	GJC2 (ENSLAFG00000010220) #27	IBA57 (ENSLAFG00000010222) #28	ENSLAFG00000022315 #29	ENSLAFG00000030495	PRMT2 (ENSLAFG00000009604)	S100B (ENSLAFG00000014935)
Xenarthra	ANCESTRAL SPECIES	596														ENSGT00940000155138.f	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00390000006465 #28	ENSGT00940000154756.A #29
Armadillo	MODERN SPECIES	2365												ENSDNOG00000039640	ENSDNOG00000049106	ENSDNOG00000047752	WNT9A (ENSDNOG00000007791) #21	WNT3A (ENSDNOG00000037172) #22	ENSDNOG00000049038 #23	C1orf35 (ENSDNOG00000040335) #24	MRPL55 (ENSDNOG00000024342) #25	ENSDNOG00000023608 #28	ENSDNOG00000040893 #29	ENSDNOG00000035986 #29
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000160086	ENSGT00940000163571	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000162829.c	ENSGT00940000161932.b	ENSGT00390000005082	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000154494.a	ENSGT00940000153341.b.r	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00940000163571	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000162829.c	ENSGT00940000161932.b	ENSGT00390000005082	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000157345	ENSGT00940000154494.a	ENSGT00940000153341.b.r	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00940000163571	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000162829.c	ENSGT00940000161932.b	ENSGT00390000005082	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000157345	ENSGT00940000154494.a	ENSGT00940000153341.b.r	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00940000163571	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000162829.c	ENSGT00940000161932.b	ENSGT00390000005082	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000157345	ENSGT00940000154494.a	ENSGT00940000153341.b.r	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00390000010309 #25	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28
koala	MODERN SPECIES	75	ENSPCIG00000025953	NBEAL2 (ENSPCIG00000025947)	CCDC12 (ENSPCIG00000025941)	PTH1R (ENSPCIG00000025925)	MYL3 (ENSPCIG00000006157)	ENSPCIG00000025921	TMIE (ENSPCIG00000025919)	ALS2CL (ENSPCIG00000025915)	JMJD4 (ENSPCIG00000025913) #19	SNAP47 (ENSPCIG00000025912) #20	ENSPCIG00000001277	ENSPCIG00000001298	ENSPCIG00000031488	ENSPCIG00000027274	WNT9A (ENSPCIG00000030182) #21	WNT3A (ENSPCIG00000021855) #22	ARF1 (ENSPCIG00000021851) #23	C1orf35 (ENSPCIG00000021849) #24	ENSPCIG00000021848	ENSPCIG00000021846 #26	GJC2 (ENSPCIG00000021844) #27	ENSPCIG00000021842 #28	ENSPCIG00000021839	OBSCN (ENSPCIG00000021795) #29	ENSPCIG00000021838	ENSPCIG00000015990	ENSPCIG00000017091	ENSPCIG00000015992	ENSPCIG00000031791	ENSPCIG00000001531	ENSPCIG00000017089
Common wonbat	MODERN SPECIES	1091	KIF9 (ENSVURG00010011536)	ENSVURG00010011526	ENSVURG00010011508	NBEAL2 (ENSVURG00010011244)	CCDC12 (ENSVURG00010011216)	PTH1R (ENSVURG00010011202)	ENSVURG00010011192	ENSVURG00010011184	ALS2CL (ENSVURG00010011135)	JMJD4 (ENSVURG00010011120) #19	SNAP47 (ENSVURG00010011117) #20	ENSVURG00010011097	ENSVURG00010011084	ENSVURG00010011076	WNT9A (ENSVURG00010011070) #21	WNT3A (ENSVURG00010011060) #22	ARF1 (ENSVURG00010011047) #23	C1orf35 (ENSVURG00010011035) #24	ENSVURG00010011028 #25	GUK1 (ENSVURG00010011021) #26	ENSVURG00010011010 #27	ENSVURG00010011004 #28	ENSVURG00010010994	ENSVURG00010010975 #29
Tasmanian devil	MODERN SPECIES		NBEAL2 (ENSSHAG00000011530)	CCDC12 (ENSSHAG00000021055)	PTH1R (ENSSHAG00000002214)	MYL3 (ENSSHAG00000006447)	ENSSHAG00000022564	ENSSHAG00000007071	ENSSHAG00000007862	ENSSHAG00000031952	ENSSHAG00000008746	JMJD4 (ENSSHAG00000009023) #19	SNAP47 (ENSSHAG00000009204) #20	ENSSHAG00000029686	ENSSHAG00000023996	ENSSHAG00000023350	WNT9A (ENSSHAG00000012600) #21	WNT3A (ENSSHAG00000023523) #22	ENSSHAG00000021122 #23	C1orf35 (ENSSHAG00000014645) #24	MRPL55 (ENSSHAG00000027608) #25	GUK1 (ENSSHAG00000014798) #26	GJC2 (ENSSHAG00000022939) #27	IBA57 (ENSSHAG00000026953) #28	ENSSHAG00000015166	ENSSHAG00000027621 #29	ENSSHAG00000001725	ENSSHAG00000001927	ENSSHAG00000031960	ENSSHAG00000005659	ENSSHAG00000001445	ENSSHAG00000006552	ENSSHAG00000007146
Opossum	MODERN SPECIES	5	PTH1R (ENSMODG00000013964)	MYL3 (ENSMODG00000013943)	ENSMODG00000029320	ENSMODG00000013936	ENSMODG00000036556	ENSMODG00000013934	ENSMODG00000029475	ENSMODG00000013871	ALS2CL (ENSMODG00000013867)	JMJD4 (ENSMODG00000013850) #19	SNAP47 (ENSMODG00000013844) #20	ENSMODG00000027354	ENSMODG00000013841	ENSMODG00000022963	WNT9A (ENSMODG00000013820) #21	WNT3A (ENSMODG00000013810) #22	ENSMODG00000013804	MRPL55 (ENSMODG00000013793) #25	ENSMODG00000013790 #26	GJC2 (ENSMODG00000013779) #27	IBA57 (ENSMODG00000051147) #28	ENSMODG00000027446	OBSCN (ENSMODG00000013764) #29	ENSMODG00000028809	ENSMODG00000041391	ENSMODG00000013724	ENSMODG00000013677	ENSMODG00000013671	ENSMODG00000027869	ENSMODG00000038496	ENSMODG00000013644
Sauria	ANCESTRAL SPECIES	15	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000177473	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b
tuatara	MODERN SPECIES	1269											ENSSPUG00000000482	ALS2CL (ENSSPUG00000000502)	JMJD4 (ENSSPUG00000000632) #19	SNAP47 (ENSSPUG00000000649) #20	WNT9A (ENSSPUG00000000663) #21	WNT3A (ENSSPUG00000000676) #22	ARF1 (ENSSPUG00000000686) #23	C1orf35 (ENSSPUG00000000694) #24	ENSSPUG00000000735	GUK1 (ENSSPUG00000000738) #26	ENSSPUG00000000742	ENSSPUG00000000745	ENSSPUG00000000760	ENSSPUG00000000763	ENSSPUG00000000769
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.A #29	ENSGT00940000153709.B.i	ENSGT00940000153709.B.j	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089
Common wall lizard	MODERN SPECIES	3	ENSPMRG00000016286	ENSPMRG00000016293	SETD2 (ENSPMRG00000016302)	ENSPMRG00000016314	ENSPMRG00000016319	ENSPMRG00000016324	NBEAL2 (ENSPMRG00000016501)	CCDC12 (ENSPMRG00000017214)	PTH1R (ENSPMRG00000017227)	MYL3 (ENSPMRG00000017241)	ENSPMRG00000017254	ALS2CL (ENSPMRG00000017261)	JMJD4 (ENSPMRG00000017270) #19	SNAP47 (ENSPMRG00000017275) #20	WNT9A (ENSPMRG00000017281) #21	WNT3A (ENSPMRG00000017286) #22	ARF1 (ENSPMRG00000017293) #23	C1orf35 (ENSPMRG00000017303) #24	ENSPMRG00000017319	GUK1 (ENSPMRG00000017329) #26	ENSPMRG00000017341	GJC2 (ENSPMRG00000017345) #27	IBA57 (ENSPMRG00000017347) #28	ENSPMRG00000017354	ENSPMRG00000017361 #29	ENSPMRG00000017370	ENSPMRG00000017824	ENSPMRG00000017827	ENSPMRG00000017835	ENSPMRG00000017843	HHATL (ENSPMRG00000017849)
Argentine black and white tegu	MODERN SPECIES	5	KIF9 (ENSSMRG00000017009)	ENSSMRG00000017008	SETD2 (ENSSMRG00000017006)	ENSSMRG00000016999	ENSSMRG00000016998	NBEAL2 (ENSSMRG00000016986)	CCDC12 (ENSSMRG00000016974)	PTH1R (ENSSMRG00000016972)	MYL3 (ENSSMRG00000016969)	ENSSMRG00000016967	ALS2CL (ENSSMRG00000016960)	JMJD4 (ENSSMRG00000016957) #19	SNAP47 (ENSSMRG00000016956) #20	ENSSMRG00000016954	WNT9A (ENSSMRG00000016952) #21	WNT3A (ENSSMRG00000016949) #22	ENSSMRG00000016936 ##23	C1orf35 (ENSSMRG00000016934) #24	KIAA1143 (ENSSMRG00000016933)	KIF15 (ENSSMRG00000016931)	TMEM42 (ENSSMRG00000016928)	ENSSMRG00000016927	GUK1 (ENSSMRG00000016925) #26	GJC2 (ENSSMRG00000016916) #27	IBA57 (ENSSMRG00000016914) #28	ENSSMRG00000016912	OBSCN (ENSSMRG00000016892) #29	ENSSMRG00000016874	ENSSMRG00000016872	ENSSMRG00000016871	HIGD1A (ENSSMRG00000016870)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT01100000264012	ENSGT00390000000410	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000153709.B.i	ENSGT00940000153709.B.j	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926	ENSGT00940000158548
Lizard	MODERN SPECIES	5	DPP6 (ENSACAG00000010707)	ENSACAG00000038762	ENSACAG00000010629	XRCC2 (ENSACAG00000035126)	KMT2C (ENSACAG00000014195)	GALNT11 (ENSACAG00000014168)	ENSACAG00000037326	PRKAG2 (ENSACAG00000002337)	RHEB (ENSACAG00000038398)	CRYGN (ENSACAG00000002251)	WDR86 (ENSACAG00000002245)	ENSACAG00000036256	NUB1 (ENSACAG00000012076)	ENSACAG00000034573	ENSACAG00000012183	WNT3A (ENSACAG00000040979) #22	ARF1 (ENSACAG00000006923) #23	C1orf35 (ENSACAG00000006899) #24	ENSACAG00000040651	ENSACAG00000006897	GUK1 (ENSACAG00000006879) #26	GJC2 (ENSACAG00000006876) #27	IBA57 (ENSACAG00000006874) #28	ENSACAG00000006871	OBSCN (ENSACAG00000006816) #29	ENSACAG00000038024	ENSACAG00000039408	ENSACAG00000038888	ENSACAG00000043949	ENSACAG00000006787	HHATL (ENSACAG00000006760)
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926	ENSGT00940000158548
Archosauria	ANCESTRAL SPECIES		ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.A #29	ENSGT00940000154756.B ##29	ENSGT00940000177473	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005002987	ENSCPRG00005002971	ENSCPRG00005002936	ENSCPRG00005002930	ENSCPRG00005002928	NBEAL2 (ENSCPRG00005002905)	ENSCPRG00005002835	PTH1R (ENSCPRG00005002800)	MYL3 (ENSCPRG00005002730)	ENSCPRG00005002674	ALS2CL (ENSCPRG00005002624)	JMJD4 (ENSCPRG00005002616) #19	SNAP47 (ENSCPRG00005002614) #20	ENSCPRG00005002586	WNT9A (ENSCPRG00005002553) #21	WNT3A (ENSCPRG00005002546) #22	ARF1 (ENSCPRG00005002526) #23	C1orf35 (ENSCPRG00005002524) #24	ENSCPRG00005002519	GUK1 (ENSCPRG00005002512) #26	GJC2 (ENSCPRG00005002486) #27	IBA57 (ENSCPRG00005002483) #28	ENSCPRG00005002481	ENSCPRG00005002479 #29	ENSCPRG00005002477 #29	ENSCPRG00005002473 #29	ENSCPRG00005002468 #29	ENSCPRG00005002464 #29	ENSCPRG00005002447 ##29	ENSCPRG00005002444 ##29	ENSCPRG00005002442 ##29
Aves	ANCESTRAL SPECIES	5	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360
African ostrich	MODERN SPECIES	941	CCM2 (ENSSCUG00000018142)	ENSSCUG00000018143	TBRG4 (ENSSCUG00000018144)	KLHL18 (ENSSCUG00000018147)	KIF9 (ENSSCUG00000018149)	SETD2 (ENSSCUG00000018151)	ENSSCUG00000018157	CCDC12 (ENSSCUG00000016200)	PTH1R (ENSSCUG00000016202)	MYL3 (ENSSCUG00000016212)	ENSSCUG00000016215	ALS2CL (ENSSCUG00000016221)	JMJD4 (ENSSCUG00000016225) #19	SNAP47 (ENSSCUG00000016226) #20	WNT9A (ENSSCUG00000016229) #21	WNT3A (ENSSCUG00000016232) #22	ARF1 (ENSSCUG00000016237) #23	GUK1 (ENSSCUG00000016239) #26	GJC2 (ENSSCUG00000016241) #27	ENSSCUG00000016243	CYP8B1 (ENSSCUG00000016244)	ACKR2 (ENSSCUG00000016246)	HIGD1A (ENSSCUG00000016248)	CCDC13 (ENSSCUG00000016250)	HHATL (ENSSCUG00000016253)	KLHL40 (ENSSCUG00000016258)	ZBTB47 (ENSSCUG00000016260)	NKTR (ENSSCUG00000016263)	SEC22C (ENSSCUG00000016264)	VIPR1 (ENSSCUG00000016270)	ENSSCUG00000016281
Neognathae	ANCESTRAL SPECIES		ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00390000000410.ib	ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360
Passeriformes	ANCESTRAL SPECIES		ENSGT00960000189381	ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00390000018786	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618.h #21	ENSGT00940000159618.g.a #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360
Great tit	MODERN SPECIES	11	ABCB8 (ENSPMJG00000003864)	ENSPMJG00000003874	CDK5 (ENSPMJG00000003878)	SLC4A2 (ENSPMJG00000003885)	FASTK (ENSPMJG00000003892)	TMUB1 (ENSPMJG00000003895)	ENSPMJG00000003896	AGAP3 (ENSPMJG00000003897)	GBX1 (ENSPMJG00000003909)	ASB10 (ENSPMJG00000003911)	H2BK1 (ENSPMJG00000003913)	ABCF2 (ENSPMJG00000003914)	CHPF2 (ENSPMJG00000003917)	ENSPMJG00000003920	WNT9A (ENSPMJG00000003940) #21	WNT3A (ENSPMJG00000003960) #22	ENSPMJG00000003967	ARF1 (ENSPMJG00000003968) #23	C1orf35 (ENSPMJG00000003973) #24	ENSPMJG00000003975	GUK1 (ENSPMJG00000003992) #26	GJC2 (ENSPMJG00000004002) #27	IBA57 (ENSPMJG00000004004) #28	ENSPMJG00000004007	OBSCN (ENSPMJG00000004019) #29	CYP8B1 (ENSPMJG00000004221)	ACKR2 (ENSPMJG00000004227)	HIGD1A (ENSPMJG00000004228)	CCDC13 (ENSPMJG00000004231)	HHATL (ENSPMJG00000004245)	KLHL40 (ENSPMJG00000004248)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT01090000262915	ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00390000018786	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618.h #21	ENSGT00940000159618.g.a #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360
Flycatcher	MODERN SPECIES	11	ENSFALG00000023244	ENSFALG00000001953	KLHL18 (ENSFALG00000001943)	KIF9 (ENSFALG00000001936)	SETD2 (ENSFALG00000001922)	ENSFALG00000027627	ENSFALG00000001918	ENSFALG00000029003	PTH1R (ENSFALG00000005256)	MYL3 (ENSFALG00000005210)	ENSFALG00000025140	ALS2CL (ENSFALG00000001110)	JMJD4 (ENSFALG00000001104) #19	SNAP47 (ENSFALG00000001100) #20	WNT9A (ENSFALG00000026631) #21	WNT3A (ENSFALG00000001092) #22	ARF1 (ENSFALG00000026573) ##23	C1orf35 (ENSFALG00000027612) #24	ENSFALG00000001084	ENSFALG00000001082	GUK1 (ENSFALG00000001079) #26	GJC2 (ENSFALG00000014739) #27	IBA57 (ENSFALG00000023883) #28	ENSFALG00000001076	OBSCN (ENSFALG00000001046) #29	ENSFALG00000028775	ENSFALG00000014720	ACKR2 (ENSFALG00000014706)	HIGD1A (ENSFALG00000001030)	ENSFALG00000029078	HHATL (ENSFALG00000001013)
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000155153.C.a.a	ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00390000018786	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618.h #21	ENSGT00940000159618.g.a #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000166913	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000155153.C.a.a	ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00390000018786	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618.g.b #21	ENSGT00940000159618.g.a #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT00960000193277.a	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000180074
Zebra finch	MODERN SPECIES	12	ENSTGUG00000019438	ENSTGUG00000019810	KLHL18 (ENSTGUG00000000150)	ENSTGUG00000000157	SETD2 (ENSTGUG00000000164)	ENSTGUG00000000173	CCDC12 (ENSTGUG00000022076)	PTH1R (ENSTGUG00000000188)	MYL3 (ENSTGUG00000000207)	ENSTGUG00000000210	ENSTGUG00000019396	ALS2CL (ENSTGUG00000000211)	JMJD4 (ENSTGUG00000000219) #19	SNAP47 (ENSTGUG00000000221) #20	WNT9A (ENSTGUG00000026480) #21	WNT3A (ENSTGUG00000023348) #22	ARF1 (ENSTGUG00000000233) #23	ENSTGUG00000021273 #24	ENSTGUG00000023071	GUK1 (ENSTGUG00000000236) #26	GJC2 (ENSTGUG00000000246) #27	ENSTGUG00000025629	IBA57 (ENSTGUG00000000247) #28	ENSTGUG00000022363	ENSTGUG00000028042 #29	ENSTGUG00000027931 ##29	ENSTGUG00000020352 #29	ENSTGUG00000027535 ##29	CYP8B1 (ENSTGUG00000000254)	ACKR2 (ENSTGUG00000000256)	HIGD1A (ENSTGUG00000019656)
Common canary	MODERN SPECIES	5	ENSSCAG00000005661	ENSSCAG00000005666	ENSSCAG00000005668	ENSSCAG00000005671	KLHL18 (ENSSCAG00000005688)	KIF9 (ENSSCAG00000005693)	SETD2 (ENSSCAG00000005718)	ENSSCAG00000006020	ENSSCAG00000006023	MYL3 (ENSSCAG00000006032)	ENSSCAG00000006038	ALS2CL (ENSSCAG00000006041)	JMJD4 (ENSSCAG00000006051) #19	SNAP47 (ENSSCAG00000006057) #20	ENSSCAG00000006067 #21	WNT3A (ENSSCAG00000006073) #22	ARF1 (ENSSCAG00000006081) #23	C1orf35 (ENSSCAG00000006089) #24	ENSSCAG00000006094	GUK1 (ENSSCAG00000006099) #26	ENSSCAG00000006103	ENSSCAG00000006107	GJC2 (ENSSCAG00000006108) #27	IBA57 (ENSSCAG00000006110) #28	ENSSCAG00000006113	ENSSCAG00000006118 #29	ENSSCAG00000006120 #29	ENSSCAG00000006128 ##29	ENSSCAG00000006129 ##29	ENSSCAG00000006133 ##29	ENSSCAG00000006137 #29
Medium ground finch	MODERN SPECIES	177																WNT3A (ENSGFOG00000010955) #22	ARF1 (ENSGFOG00000010950) #23	C1orf35 (ENSGFOG00000010942) #24	ENSGFOG00000010938	GUK1 (ENSGFOG00000010932) #26	GJC2 (ENSGFOG00000010930) #27	IBA57 (ENSGFOG00000010927) #28	ENSGFOG00000010923	ENSGFOG00000010890 #29	ENSGFOG00000010884 #29	ENSGFOG00000010877 #29	ENSGFOG00000010871 #29	CYP8B1 (ENSGFOG00000010868)	ACKR2 (ENSGFOG00000010862)	HIGD1A (ENSGFOG00000010858)	CCDC13 (ENSGFOG00000010846)
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00390000000410.ib	ENSGT00390000000410.jb	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000168031	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089
Golden eagle	MODERN SPECIES	19	ENSACCG00020015106	ENSACCG00020015078	KLHL18 (ENSACCG00020015049)	KIF9 (ENSACCG00020014934)	SETD2 (ENSACCG00020014831)	ENSACCG00020014795	CCDC12 (ENSACCG00020014293)	PTH1R (ENSACCG00020014276)	ENSACCG00020014254	MYL3 (ENSACCG00020014220)	ENSACCG00020014178	ALS2CL (ENSACCG00020014088)	JMJD4 (ENSACCG00020014040) #19	SNAP47 (ENSACCG00020014024) #20	WNT9A (ENSACCG00020014006) #21	WNT3A (ENSACCG00020013989) #22	ARF1 (ENSACCG00020013970) #23	C1orf35 (ENSACCG00020013955) #24	ENSACCG00020013934	GUK1 (ENSACCG00020013918) #26	GJC2 (ENSACCG00020013898) #27	IBA57 (ENSACCG00020013879) #28	ENSACCG00020013855	OBSCN (ENSACCG00020013522) #29	CYP8B1 (ENSACCG00020013113)	ACKR2 (ENSACCG00020013098)	HIGD1A (ENSACCG00020013074)	CCDC13 (ENSACCG00020013054)	HHATL (ENSACCG00020013024)	KLHL40 (ENSACCG00020012966)	ZBTB47 (ENSACCG00020012943)
Kakapo	MODERN SPECIES		ENSSHBG00005002998	ENSSHBG00005003007	KLHL18 (ENSSHBG00005003023)	KIF9 (ENSSHBG00005003045)	SETD2 (ENSSHBG00005003069)	ENSSHBG00005003081	ENSSHBG00005003101	CCDC12 (ENSSHBG00005003351)	PTH1R (ENSSHBG00005003364)	MYL3 (ENSSHBG00005003389)	ENSSHBG00005003404	ALS2CL (ENSSHBG00005003439)	JMJD4 (ENSSHBG00005003484) #19	SNAP47 (ENSSHBG00005003498) #20	WNT9A (ENSSHBG00005003511) #21	WNT3A (ENSSHBG00005003522) #22	ARF1 (ENSSHBG00005003540) #23	C1orf35 (ENSSHBG00005003549) #24	ENSSHBG00005003555	GUK1 (ENSSHBG00005003565) #26	GJC2 (ENSSHBG00005003575) #27	IBA57 (ENSSHBG00005003583) #28	ENSSHBG00005003593	ENSSHBG00005003632 #29	ENSSHBG00005003697 #29	CYP8B1 (ENSSHBG00005003705)	ACKR2 (ENSSHBG00005003711)	HIGD1A (ENSSHBG00005003716)	CCDC13 (ENSSHBG00005003724)	HHATL (ENSSHBG00005003739)	KLHL40 (ENSSHBG00005003760)
Galloanserae	ANCESTRAL SPECIES		ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000158548
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000180074
Japanese quail	MODERN SPECIES	11	CATH1 (ENSCJPG00005010628)	ENSCJPG00005010627	CJ-CATH3 (ENSCJPG00005010622)	KLHL18 (ENSCJPG00005010599)	KIF9 (ENSCJPG00005010569)	SETD2 (ENSCJPG00005010568)	ENSCJPG00005010567	CCDC12 (ENSCJPG00005010559)	PTH1R (ENSCJPG00005010557)	MYL3 (ENSCJPG00005010555)	ENSCJPG00005010554	ALS2CL (ENSCJPG00005010552)	JMJD4 (ENSCJPG00005010551) #19	SNAP47 (ENSCJPG00005010550) #20	WNT9A (ENSCJPG00005010543) #21	WNT3A (ENSCJPG00005010538) #22	ARF1 (ENSCJPG00005010537) #23	C1orf35 (ENSCJPG00005010536) #24	ENSCJPG00005010535	GUK1 (ENSCJPG00005010534) #26	GJC2 (ENSCJPG00005010533) #27	IBA57 (ENSCJPG00005010532) #28	ENSCJPG00005010531	ENSCJPG00005010530	CYP8B1 (ENSCJPG00005010528)	ACKR2 (ENSCJPG00005010527)	HIGD1A (ENSCJPG00005010526)	CCDC13 (ENSCJPG00005010525)	HHATL (ENSCJPG00005010511)	KLHL40 (ENSCJPG00005010510)	ZBTB47 (ENSCJPG00005010509)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00390000018786	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000158548
Turkey	MODERN SPECIES	26	ENSMGAG00000002975	ENSMGAG00000002969	KLHL18 (ENSMGAG00000002927)	KIF9 (ENSMGAG00000002896)	SETD2 (ENSMGAG00000002874)	ENSMGAG00000020264	NBEAL2 (ENSMGAG00000002828)	CCDC12 (ENSMGAG00000002815)	PTH1R (ENSMGAG00000002767)	MYL3 (ENSMGAG00000002731)	ENSMGAG00000020342	ALS2CL (ENSMGAG00000002690)	JMJD4 (ENSMGAG00000002678) #19	SNAP47 (ENSMGAG00000002667) #20	WNT9A (ENSMGAG00000010719) #21	WNT3A (ENSMGAG00000002648) #22	ARF1 (ENSMGAG00000002635) #23	C1orf35 (ENSMGAG00000002619) #24	ENSMGAG00000018773	GUK1 (ENSMGAG00000002569) #26	GJC2 (ENSMGAG00000002549) #27	IBA57 (ENSMGAG00000002535) #28	ENSMGAG00000017782	ENSMGAG00000015992	ACKR2 (ENSMGAG00000002448)	HIGD1A (ENSMGAG00000002410)	CCDC13 (ENSMGAG00000002402)	HHATL (ENSMGAG00000002393)	ENSMGAG00000002375	ZBTB47 (ENSMGAG00000002353)	NKTR (ENSMGAG00000002292)
Chicken	MODERN SPECIES	11	KLHL18 (ENSGALG00010025925)	KIF9 (ENSGALG00010025736)	SETD2 (ENSGALG00010025723)	ENSGALG00010025691	ENSGALG00010025671	NBEAL2 (ENSGALG00010025645)	CCDC12 (ENSGALG00010025606)	ENSGALG00010025584	PTH2R (ENSGALG00010025577)	MYL3 (ENSGALG00010025568)	ENSGALG00010024916	ALS2CL (ENSGALG00010024904)	JMJD4 (ENSGALG00010024874) #19	SNAP47 (ENSGALG00010024865) #20	WNT9A (ENSGALG00010026166) #21	WNT3A (ENSGALG00010026141) #22	ARF1 (ENSGALG00010026097) #23	C2H1orf35 (ENSGALG00010026076) #24	ENSGALG00010026064	GUK1 (ENSGALG00010026040) #26	GJC2 (ENSGALG00010026011) #27	IBA57 (ENSGALG00010026030) #28	ENSGALG00010025962	OBSCN (ENSGALG00010025849) #29	ACKR2 (ENSGALG00010027403)	HIGD1C (ENSGALG00010027707)	ENSGALG00010027387	HHATL (ENSGALG00010027384)	KLHL40 (ENSGALG00010027381)	ZBTB47 (ENSGALG00010027378)	NKTR (ENSGALG00010027374)
Anatidae	ANCESTRAL SPECIES	1	ENSGT01030000234607.A.a.b.a	ENSGT00390000000410.ib	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000158548	ENSGT00940000159338
Duck	MODERN SPECIES	10	ENSAPLG00000022628	MYL3 (ENSAPLG00000005814)	PTH1R (ENSAPLG00000005598)	CCDC12 (ENSAPLG00000005482)	ENSAPLG00000004917	ENSAPLG00000022471	KLHL18 (ENSAPLG00000004276)	ENSAPLG00000030207	ENSAPLG00000020733	SCAP (ENSAPLG00000014099)	SMARCC1 (ENSAPLG00000014937)	DHX30 (ENSAPLG00000015682)	ENSAPLG00000028437	ENSAPLG00000028085	CDC25A (ENSAPLG00000008300)	WNT3A (ENSAPLG00000004673) #22	ARF1 (ENSAPLG00000022202) #23	C1orf35 (ENSAPLG00000004460) #24	ENSAPLG00000027242	GUK1 (ENSAPLG00000004222) #26	GJC2 (ENSAPLG00000000708) #27	ENSAPLG00000030118	ENSAPLG00000020914 #29	ENSAPLG00000017812 #29	ENSAPLG00000026129 #29	ENSAPLG00000031005 #29	ENSAPLG00000024143	ENSAPLG00000019155 ##29	ACKR2 (ENSAPLG00000000705)	CCDC13 (ENSAPLG00000013331)	HHATL (ENSAPLG00000013163)
Pink-footed goose	MODERN SPECIES	35					ENSABRG00000003891	ENSABRG00000003879	NBEAL2 (ENSABRG00000003189)	CCDC12 (ENSABRG00000003132)	PTH1R (ENSABRG00000003090)	MYL3 (ENSABRG00000003074)	ENSABRG00000003061	ALS2CL (ENSABRG00000002939)	JMJD4 (ENSABRG00000002916) #19	SNAP47 (ENSABRG00000002910) #20	WNT9A (ENSABRG00000002871) #21	WNT3A (ENSABRG00000002868) #22	ARF1 (ENSABRG00000002849) #23	C1orf35 (ENSABRG00000002825) #24	ENSABRG00000002808	GUK1 (ENSABRG00000002795) #26	GJC2 (ENSABRG00000002777) #27	IBA57 (ENSABRG00000002749) #28	ENSABRG00000002728	CYP8B1 (ENSABRG00000001928)	ACKR2 (ENSABRG00000001902)	HIGD1A (ENSABRG00000001881)	CCDC13 (ENSABRG00000001846)	HHATL (ENSABRG00000001773)	KLHL40 (ENSABRG00000001748)	ZBTB47 (ENSABRG00000001728)	NKTR (ENSABRG00000001684)
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00390000000410.lb	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926	ENSGT00940000158548
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00390000000410.lb	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000154756.A.ce.a.b #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000173926
Testudinidae	ANCESTRAL SPECIES	1	ENSGT01100000264012	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000003267	ENSGT00940000154756.A.ce.a.b #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005010181	KLHL18 (ENSGEVG00005010243)	KIF9 (ENSGEVG00005010334)	SETD2 (ENSGEVG00005010484)	ENSGEVG00005010646	NBEAL2 (ENSGEVG00005010756)	CCDC12 (ENSGEVG00005011072)	PTH1R (ENSGEVG00005011114)	MYL3 (ENSGEVG00005011154)	ENSGEVG00005011228	ALS2CL (ENSGEVG00005011324)	JMJD4 (ENSGEVG00005011871) #19	SNAP47 (ENSGEVG00005011922) #20	ENSGEVG00005011986	WNT9A (ENSGEVG00005012041) #21	WNT3A (ENSGEVG00005012137) #22	ARF1 (ENSGEVG00005012184) #23	C1orf35 (ENSGEVG00005012210) #24	ENSGEVG00005012238	GUK1 (ENSGEVG00005012265) #26	GJC2 (ENSGEVG00005012284) #27	IBA57 (ENSGEVG00005012316) #28	ENSGEVG00005012335	OBSCN (ENSGEVG00005012558) #29	CYP8B1 (ENSGEVG00005014888)	ACKR2 (ENSGEVG00005014904)	HIGD1A (ENSGEVG00005014926)	CCDC13 (ENSGEVG00005014944)	HHATL (ENSGEVG00005014986)	KLHL40 (ENSGEVG00005015018)	ZBTB47 (ENSGEVG00005015102)
Emydidae	ANCESTRAL SPECIES	35	ENSGT00390000000410.lb	ENSGT00950000185398	ENSGT00940000157026	ENSGT00940000158533	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000164845	ENSGT00940000161305	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00390000005590 #24	ENSGT00940000165232	ENSGT00940000155815 #26	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00390000003267	ENSGT00940000154756.A.ce.a.a #29	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089
Three-toed box turtle	MODERN SPECIES	48	ENSTMTG00000007252	ENSTMTG00000007259	KLHL18 (ENSTMTG00000007268)	SETD2 (ENSTMTG00000007286)	ENSTMTG00000007371	NBEAL2 (ENSTMTG00000007411)	CCDC12 (ENSTMTG00000007593)	PTH1R (ENSTMTG00000007606)	MYL3 (ENSTMTG00000007625)	ENSTMTG00000007651	ALS2CL (ENSTMTG00000007679)	JMJD4 (ENSTMTG00000007818) #19	SNAP47 (ENSTMTG00000007837) #20	ENSTMTG00000007845	WNT9A (ENSTMTG00000007852) #21	WNT3A (ENSTMTG00000007868) #22	ARF1 (ENSTMTG00000007905) #23	C1orf35 (ENSTMTG00000007919) #24	ENSTMTG00000007926	GUK1 (ENSTMTG00000007938) #26	GJC2 (ENSTMTG00000007955) #27	IBA57 (ENSTMTG00000007959) #28	ENSTMTG00000007970	ENSTMTG00000008021 #29	ENSTMTG00000008161 #29	ENSTMTG00000008168	ENSTMTG00000008188 #29	ENSTMTG00000008223	HIGD1A (ENSTMTG00000008234)	CCDC13 (ENSTMTG00000008247)	HHATL (ENSTMTG00000008279)
painted turtle	MODERN SPECIES	749								PTH1R (ENSCPBG00000001485)	MYL3 (ENSCPBG00000001514)	ENSCPBG00000001521	ALS2CL (ENSCPBG00000001553)	JMJD4 (ENSCPBG00000001622) #19	SNAP47 (ENSCPBG00000001637) #20	ENSCPBG00000001655	WNT9A (ENSCPBG00000001669) #21	WNT3A (ENSCPBG00000001683) #22	ARF1 (ENSCPBG00000001732) #23	C1orf35 (ENSCPBG00000001754) #24	ENSCPBG00000001771	GUK1 (ENSCPBG00000001789) #26	GJC2 (ENSCPBG00000001821) #27	IBA57 (ENSCPBG00000001832) #28	ENSCPBG00000001843	OBSCN (ENSCPBG00000002168) #29	CYP8B1 (ENSCPBG00000003980)	ACKR2 (ENSCPBG00000003986)	HIGD1A (ENSCPBG00000003994)	CCDC13 (ENSCPBG00000004012)	HHATL (ENSCPBG00000004042)	KLHL40 (ENSCPBG00000004071)	ZBTB47 (ENSCPBG00000004296)
Anura	ANCESTRAL SPECIES																	ENSGT00940000160510 #22
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000029212 #29	ENSLLEG00000028841 #29	ENSLLEG00000028787	ENSLLEG00000028761	IBA57 (ENSLLEG00000028744) #28	ENSLLEG00000028732	GJC2 (ENSLLEG00000028718) #27	ENSLLEG00000028711	ENSLLEG00000028703	ENSLLEG00000028696	ENSLLEG00000028684	KLHL40 (ENSLLEG00000028663)	ZBTB47 (ENSLLEG00000028615)	HHATL (ENSLLEG00000028559)	CCDC13 (ENSLLEG00000028404)	WNT3A (ENSLLEG00000028256) #22	ENSLLEG00000028228	ARF1 (ENSLLEG00000028197) #23	C1orf35 (ENSLLEG00000028170) #24	ENSLLEG00000028158	ENSLLEG00000028147	MINDY4 (ENSLLEG00000027995)	AQP1 (ENSLLEG00000027945)	ADCYAP1R1 (ENSLLEG00000027888)	ENSLLEG00000027866	VIPR1 (ENSLLEG00000027820)	ENSLLEG00000027808	ENSLLEG00000027722	ENSLLEG00000027617	ABCB8 (ENSLLEG00000027448)	CDK5 (ENSLLEG00000027283)
Coelacanth	MODERN SPECIES	298								SETD2 (ENSLACG00000007137)	ENSLACG00000010062	KIF9 (ENSLACG00000010585)	KLHL18 (ENSLACG00000011282)	SNAP47 (ENSLACG00000012114) #20	ENSLACG00000014789	ENSLACG00000015615	WNT9A (ENSLACG00000016780) #21	WNT3A (ENSLACG00000017397) #22	ARF1 (ENSLACG00000017926) #23	ENSLACG00000018012	RHPN1 (ENSLACG00000018042)
Actinopterygii	ANCESTRAL SPECIES	313													ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815 #26	ENSGT00940000167421	ENSGT00940000168428	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00390000003267
Neopterygii	ANCESTRAL SPECIES	275													ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000167421	ENSGT00940000155815.p #26	ENSGT00940000168428	ENSGT00940000154756.B ##29	ENSGT00940000154756.A #29	ENSGT00390000003267
Osteoglossocephalai	ANCESTRAL SPECIES	127	ENSGT00940000157015.i.a	ENSGT00940000159600	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a
Clupeocephala	ANCESTRAL SPECIES	105	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Otomorpha	ANCESTRAL SPECIES	163	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b	ENSGT00940000155665.b	ENSGT01030000234573.A.b.a.c	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a	ENSGT01030000235558
Otophysi	ANCESTRAL SPECIES	194	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b	ENSGT00940000155665.b	ENSGT01030000234573.A.b.a.c	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a
Characiphysae	ANCESTRAL SPECIES	121	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00970000195602	ENSGT00520000055591.a.b	ENSGT00940000155665.b	ENSGT01030000234573.A.b.a.c	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a
Channel catfish	MODERN SPECIES	26	dis3l2 (ENSIPUG00000005868)	mier1 (ENSIPUG00000005974)	slc35d1b (ENSIPUG00000005991)	SERBP1 (ENSIPUG00000006028)	ENSIPUG00000006073	ENSIPUG00000006084	CYP8B1 (ENSIPUG00000006096)	CYP8B1 (ENSIPUG00000006105)	CYP8B1 (ENSIPUG00000006112)	GJC1 (ENSIPUG00000006118) #27	iba57 (ENSIPUG00000006129) #28	jmjd4 (ENSIPUG00000006140) #19	snap47 (ENSIPUG00000006150) #20	ENSIPUG00000006183	WNT9A (ENSIPUG00000006207) #21	WNT3A (ENSIPUG00000006237) #22	arf1 (ENSIPUG00000006311)	zgc:63882 (ENSIPUG00000006390) #24	guk1 (ENSIPUG00000006480) #26	IPP (ENSIPUG00000006504)	ENSIPUG00000006540	ENSIPUG00000006566	tmie (ENSIPUG00000006597)	pth1r (ENSIPUG00000006617)	si:ch211-14a17.11 (ENSIPUG00000006641)	mmp14b (ENSIPUG00000006655)	ENSIPUG00000006721	ENSIPUG00000006736
Characiphysae_b	ANCESTRAL SPECIES	197																ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00970000195602	ENSGT00520000055591.a.b	ENSGT00940000155665.b	ENSGT01030000234573.A.b.a.c	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a
Characoidei	ANCESTRAL SPECIES	325																ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00940000153709.B	ENSGT01020000230359.E
Red-bellied piranha	MODERN SPECIES	1772																wnt3a (ENSPNAG00000018844) #22
Mexicana tetra	MODERN SPECIES	51	wnt9a (ENSAMXG00000040570) #21	ENSAMXG00000036242	snap47 (ENSAMXG00000019570) #20	jmjd4 (ENSAMXG00000019587) #19	iba57 (ENSAMXG00000033607) #28	ENSAMXG00000039090	ENSAMXG00000019616	ENSAMXG00000033266	slc35d1b (ENSAMXG00000036976)	mier1b (ENSAMXG00000042200)	ENSAMXG00000041454	DIS3L2 (ENSAMXG00000019663)	ENSAMXG00000042968	eif2b5 (ENSAMXG00000019751)	ENSAMXG00000043569	wnt3a (ENSAMXG00000031704) #22	arf1 (ENSAMXG00000019845)	zgc:63882 (ENSAMXG00000030163) #24	guk1a (ENSAMXG00000033762) #26	IPP (ENSAMXG00000019888)	gjc2 (ENSAMXG00000030957) #27	cyp8b1.2 (ENSAMXG00000019923)	ENSAMXG00000034524	ENSAMXG00000039584	ENSAMXG00000040964	ENSAMXG00000031654	ENSAMXG00000036257	ENSAMXG00000040630	ENSAMXG00000033322	ENSAMXG00000041566	ENSAMXG00000037889
Electric eel	MODERN SPECIES	549																wnt3a (ENSEEEG00000002587) #22	arf1 (ENSEEEG00000002560)	zgc:63882 (ENSEEEG00000002558) #24	guk1a (ENSEEEG00000002556) #26	IPP (ENSEEEG00000002551)	pik3r3a (ENSEEEG00000002550)	ENSEEEG00000002532	ENSEEEG00000002523	SERBP1 (ENSEEEG00000002520)	slc35d1b (ENSEEEG00000002516)	mier1b (ENSEEEG00000002510)	ENSEEEG00000002509	DIS3L2 (ENSEEEG00000002383)	ENSEEEG00000002360	eif2b5 (ENSEEEG00000002322)	ENSEEEG00000002318
Cyprinoidei	ANCESTRAL SPECIES	174									ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b	ENSGT01060000248962	ENSGT00510000047568
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	165	ENSGT00940000156280.a.a.a	ENSGT00940000155406.h.d	ENSGT00940000164792.b.a	ENSGT00940000164792.b.b	ENSGT00940000155918.c.b.a	ENSGT00940000158746.i	ENSGT00940000155117.f.b.d.b	ENSGT00390000001114.d	ENSGT00950000182902.a.c.e	ENSGT00390000008041.B.e	ENSGT01020000230359.E.c	ENSGT00940000153709.B.y	ENSGT00940000159380.b #19	ENSGT00950000182843.b.h #20	ENSGT00940000159618.c #21	ENSGT00940000160510.c #22	ENSGT00390000005590 #24	ENSGT00940000155815.q.b #26	ENSGT00940000156259.a.b.b.a	ENSGT00530000063187.B.d	ENSGT00510000047568.b	ENSGT01030000234517.A.m	ENSGT00390000009615.r	ENSGT00390000016232.r	ENSGT00940000157015.i.b.b.a	ENSGT00940000157015.i.a.i	ENSGT00940000156795.f	ENSGT01030000234570.d.b.a.b.b.b.j	ENSGT00940000158574.c.b	ENSGT00940000154843.F.c.a.a	ENSGT00940000157354.j.a
Cyprininae_a	ANCESTRAL SPECIES	238	ENSGT00940000155406.h.d	ENSGT00940000164792.b.a	ENSGT00940000155918.c.b.a	ENSGT00940000158746.i	ENSGT00940000155117.f.b.d.b	ENSGT00390000001114.d	ENSGT00950000182902.a.c.e	ENSGT00390000008041.B.e	ENSGT01020000230359.E.c	ENSGT00940000153709.B.z.b	ENSGT01090000260005.a.a.a.b.a.a.a.b #27	ENSGT00390000006465.d #28	ENSGT00940000159380.a.b #19	ENSGT00950000182843.b.h #20	ENSGT00940000159618.c #21	ENSGT00940000160510.c #22	ENSGT00390000005590 #24	ENSGT00940000155815.q.b #26	ENSGT00940000156259.a.b.b.a	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00510000047568.b	ENSGT01030000234517.A.m	ENSGT00390000009615.r	ENSGT00390000016232.r	ENSGT00940000157015.i.b.b.a	ENSGT00940000157015.i.a.i	ENSGT00940000156795.f	ENSGT01030000234570.d.b.a.b.b.b.j	ENSGT00940000158574.c.b
Golden-line barbel	MODERN SPECIES	626		dpp6b (ENSSGRG00000048879)	ARHGAP21 (ENSSGRG00000048272)	prtfdc1b (ENSSGRG00000048255)	GPR158 (ENSSGRG00000048239)	ENSSGRG00000048238	cdc73 (ENSSGRG00000048235)	abhd3 (ENSSGRG00000048225)	greb1l (ENSSGRG00000048220)	ENSSGRG00000048219	CYP8B1 (ENSSGRG00000048218)	gjc2 (ENSSGRG00000048217) #27	iba57 (ENSSGRG00000048216) #28	snap47 (ENSSGRG00000048214) #20	wnt9a (ENSSGRG00000048213) #21	wnt3a (ENSSGRG00000048207) #22	zgc:63882 (ENSSGRG00000048205) #24
Common carp reference	MODERN SPECIES	21	ENSCCRG00000043682	prtfdc1b (ENSCCRG00000020910)	ENSCCRG00000007043	ENSCCRG00000058156	ENSCCRG00000037111	cdc73 (ENSCCRG00000036939)	ENSCCRG00000043274	abhd3 (ENSCCRG00000033078)	greb1l (ENSCCRG00000035096)	ENSCCRG00000053488	ENSCCRG00000062331 #27	iba57 (ENSCCRG00000034941) #28	jmjd4 (ENSCCRG00000034839) #19	snap47 (ENSCCRG00000002315) #20	wnt9a (ENSCCRG00000058872) #21	wnt3a (ENSCCRG00000073868) #22	ARF1 (ENSCCRG00000013678) ##23	zgc:63882 (ENSCCRG00000013674) #24	guk1a (ENSCCRG00000013449) #26	pik3r3a (ENSCCRG00000013431)	ENSCCRG00000013424	ENSCCRG00000013420	rock1 (ENSCCRG00000009725)	usp14 (ENSCCRG00000005390)	thoc1 (ENSCCRG00000007373)	aqp1a.2 (ENSCCRG00000068182)	aqp1a.1 (ENSCCRG00000063379)	ENSCCRG00000007405	myl13 (ENSCCRG00000077228)	pth1r (ENSCCRG00000000322)	tmie (ENSCCRG00000061065)
Goldfish	MODERN SPECIES	170															wnt9a (ENSCARG00000063112) #21	wnt3a (ENSCARG00000063189) #22	arf1 (ENSCARG00000063238)
Cyprininae	ANCESTRAL SPECIES	66	ENSGT00940000155918.c.b.b	ENSGT00940000158746.j	ENSGT00390000001114.c	ENSGT00940000155117.f.b.d.a	ENSGT00390000006200	ENSGT00950000182902.a.c.f	ENSGT00390000008041.B.f	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.a.a.a	ENSGT01020000230359.E.d	ENSGT00940000153709.B.z	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380.a.a #19	ENSGT00950000182843.b.g #20	ENSGT00940000159618.d #21	ENSGT00940000160510.d #22	ENSGT00940000165468	ENSGT00940000155815.q.a #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b.b	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b	ENSGT01060000248962	ENSGT00510000047568.a	ENSGT01030000234517.A.n	ENSGT00390000009615.q	ENSGT00390000016232.q	ENSGT00940000157015.i.b.b.b	ENSGT00940000157015.i.a.j	ENSGT00940000156795.e	ENSGT01030000234570.d.b.a.b.b.b.i
Cyprininae_a	ANCESTRAL SPECIES	98	ENSGT00940000155918.c.b.b	ENSGT00940000158746.j	ENSGT00390000001114.c	ENSGT00940000155117.f.b.d.a	ENSGT00390000006200	ENSGT00950000182902.a.c.f	ENSGT00390000008041.B.f	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.a.a.a	ENSGT01020000230359.E.d	ENSGT00940000153709.B.z.a	ENSGT01090000260005.a.a.a.b.a.a.a.a #27	ENSGT00390000006465.c #28	ENSGT00940000159380.a.a #19	ENSGT00950000182843.b.g #20	ENSGT00940000159618.d #21	ENSGT00940000160510.d #22	ENSGT00940000165468	ENSGT00940000155815.q.a #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b.b	ENSGT00520000055591.a.b	ENSGT01060000248962	ENSGT00510000047568.a	ENSGT01030000234517.A.n	ENSGT00390000009615.q	ENSGT00390000016232.q	ENSGT00940000157015.i.b.b.b	ENSGT00940000157015.i.a.j	ENSGT00940000156795.e	ENSGT01030000234570.d.b.a.b.b.b.i	ENSGT00940000158574.c.a
Common carp reference	MODERN SPECIES	29	ENSCCRG00000057211	ENSCCRG00000054702	ENSCCRG00000066657	ENSCCRG00000074994	ro60 (ENSCCRG00000013778)	abhd3 (ENSCCRG00000027129)	greb1l (ENSCCRG00000027147)	ENSCCRG00000022703	ENSCCRG00000070960	ENSCCRG00000082688	ENSCCRG00000079928 #27	iba57 (ENSCCRG00000075511) #28	jmjd4 (ENSCCRG00000001860) #19	snap47 (ENSCCRG00000034814) #20	wnt9a (ENSCCRG00000062230) #21	wnt3a (ENSCCRG00000003279) #22	arf1 (ENSCCRG00000065199)	guk1a (ENSCCRG00000063151) #26	ENSCCRG00000000580	pik3r3a (ENSCCRG00000079471)	ENSCCRG00000065085	ENSCCRG00000010092	rock1 (ENSCCRG00000009200)	usp14 (ENSCCRG00000063203)	thoc1 (ENSCCRG00000009585)	ENSCCRG00000068034	aqp1a.2 (ENSCCRG00000058786)	aqp1a.1 (ENSCCRG00000009618)	ENSCCRG00000064335	ENSCCRG00000079755	myl13 (ENSCCRG00000042460)
Golden-line barbel	MODERN SPECIES	175	ARHGAP21 (ENSSGRG00000053023)	GPR158 (ENSSGRG00000053007)	ENSSGRG00000053003	cdc73 (ENSSGRG00000052946)	ro60 (ENSSGRG00000052931)	abhd3 (ENSSGRG00000052912)	greb1l (ENSSGRG00000052909)	ENSSGRG00000052908	ENSSGRG00000052907	CYP8B1 (ENSSGRG00000052906)	gjc2 (ENSSGRG00000052905) #27	iba57 (ENSSGRG00000052904) #28	jmjd4 (ENSSGRG00000052903) #19	snap47 (ENSSGRG00000052902) #20	wnt9a (ENSSGRG00000052901) #21	wnt3a (ENSSGRG00000052900) #22	arf1 (ENSSGRG00000052866)	ENSSGRG00000052863	guk1a (ENSSGRG00000052862) #26	IPP (ENSSGRG00000052861)	pik3r3a (ENSSGRG00000052860)	ENSSGRG00000052857	ENSSGRG00000052856	eif2b5 (ENSSGRG00000052835)	rock1 (ENSSGRG00000051985)	usp14 (ENSSGRG00000051937)	ENSSGRG00000051935	ENSSGRG00000051931	aqp1a.1 (ENSSGRG00000051928)	CRHR2 (ENSSGRG00000051923)	myl13 (ENSSGRG00000051920)
Goldfish	MODERN SPECIES	19	ENSCARG00000016222	cdc73 (ENSCARG00000016240)	ENSCARG00000016309	ENSCARG00000016311	ro60 (ENSCARG00000016317)	abhd3 (ENSCARG00000016339)	greb1l (ENSCARG00000016394)	ENSCARG00000016765	CYP8B1 (ENSCARG00000016769)	gjc2 (ENSCARG00000016775) #27	iba57 (ENSCARG00000016779) #28	jmjd4 (ENSCARG00000016793) #19	snap47 (ENSCARG00000016807) #20	ENSCARG00000016821	wnt9a (ENSCARG00000016826) #21	wnt3a (ENSCARG00000016853) #22	ENSCARG00000016895	arf1 (ENSCARG00000016898)	guk1a (ENSCARG00000016905) #26	IPP (ENSCARG00000016951)	pik3r3a (ENSCARG00000017345)	ENSCARG00000017365	ENSCARG00000017373	ENSCARG00000017406	eif2b5 (ENSCARG00000017437)	rock1 (ENSCARG00000017794)	usp14 (ENSCARG00000018178)	thoc1 (ENSCARG00000019788)	aqp1a.2 (ENSCARG00000019841)	aqp1a.1 (ENSCARG00000019850)	CRHR2 (ENSCARG00000019883)
Zebrafish	MODERN SPECIES	11	MMP16 (ENSDARG00000058876)	pter (ENSDARG00000063375)	c1ql3b (ENSDARG00000036483)	gpt (ENSDARG00000019541)	ENSDARG00000079730	SERP1 (ENSDARG00000076223)	gjc2 (ENSDARG00000073896) #27	cyp8b1.3 (ENSDARG00000097559)	cyp8b1.2 (ENSDARG00000097556)	cyp8b1.1 (ENSDARG00000053068)	ACKR2 (ENSDARG00000086314)	iba57 (ENSDARG00000063446) #28	jmjd4 (ENSDARG00000058995) #19	snap47 (ENSDARG00000063445) #20	wnt9a (ENSDARG00000063437) #21	wnt3a (ENSDARG00000058822) #22	arf1 (ENSDARG00000009484)	C2H1orf35 (ENSDARG00000004525) #24	guk1a (ENSDARG00000030340) #26	pik3r3a (ENSDARG00000103038)	ENSDARG00000101799	ENSDARG00000099937	eif2b5 (ENSDARG00000074995)	rock1 (ENSDARG00000058993)	usp14 (ENSDARG00000025889)	thoc1 (ENSDARG00000088246)	aqp1a.2 (ENSDARG00000091027)	aqp1a.1 (ENSDARG00000023713)	ENSDARG00000087421	ENSDARG00000114019	CRHR2 (ENSDARG00000062377)
Clupeiformes	ANCESTRAL SPECIES	92	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b	ENSGT00940000155665.b	ENSGT01030000234573.A.b.a.c	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a	ENSGT01030000235558
Atlantic herring	MODERN SPECIES	17	aqp1a.2 (ENSCHAG00000016719)	AQP1 (ENSCHAG00000016711)	aqp1a.1 (ENSCHAG00000016582)	CRHR2 (ENSCHAG00000016266)	myl13 (ENSCHAG00000016246)	pth1r (ENSCHAG00000015972)	tmie (ENSCHAG00000015949)	CCDC13 (ENSCHAG00000015940)	ENSCHAG00000015933	cyp8b1.2 (ENSCHAG00000015889)	gjc2 (ENSCHAG00000015884) #27	iba57 (ENSCHAG00000015805) #28	jmjd4 (ENSCHAG00000015760) #19	snap47 (ENSCHAG00000015750) #20	wnt9a (ENSCHAG00000015715) #21	wnt3a (ENSCHAG00000015657) #22	arf1 (ENSCHAG00000015617)	zgc:63882 (ENSCHAG00000015610) #24	guk1a (ENSCHAG00000015567) #26	IPP (ENSCHAG00000015541)	ENSCHAG00000015024	ENSCHAG00000015004	SERBP1 (ENSCHAG00000014992)	slc35d1b (ENSCHAG00000014776)	mier1b (ENSCHAG00000014757)	ENSCHAG00000014738	GPR141 (ENSCHAG00000014733)	ctnnd2b (ENSCHAG00000011975)	ANKRD33B (ENSCHAG00000011899)	marchf6 (ENSCHAG00000011455)	atpsckmt (ENSCHAG00000011430)
Denticle herring	MODERN SPECIES	14	aqp1a.2 (ENSDCDG00000019338)	ENSDCDG00000019372	aqp1a.1 (ENSDCDG00000019982)	CRHR2 (ENSDCDG00000019988)	myl13 (ENSDCDG00000020133)	pth1r (ENSDCDG00000020195)	tmie (ENSDCDG00000021716)	ENSDCDG00000021722	ENSDCDG00000021730	cyp8b1.2 (ENSDCDG00000021738)	gjc2 (ENSDCDG00000021739) #27	iba57 (ENSDCDG00000021741) #28	jmjd4 (ENSDCDG00000021744) #19	snap47 (ENSDCDG00000021746) #20	wnt9a (ENSDCDG00000021748) #21	wnt3a (ENSDCDG00000021752) #22	ARF1 (ENSDCDG00000021759) #23	zgc:63882 (ENSDCDG00000021762) #24	guk1a (ENSDCDG00000021769) #26	IPP (ENSDCDG00000021774)	pik3r3a (ENSDCDG00000021780)	ENSDCDG00000021816	LRRC38 (ENSDCDG00000022292)	ENSDCDG00000022298	slc35d1b (ENSDCDG00000022302)	mier1b (ENSDCDG00000022310)	DIS3L2 (ENSDCDG00000022324)	ACAP2 (ENSDCDG00000022650)	eif2b5 (ENSDCDG00000025848)	ENSDCDG00000025931	ENSDCDG00000025935
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B ##29	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00940000177117	ENSGT00940000177473	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000168601	ENSGT00940000165535
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.u.b ##29	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871
Pinecone sodierfish	MODERN SPECIES	8	usp14 (ENSMMDG00005019192)	thoc1 (ENSMMDG00005019139)	aqp1a.2 (ENSMMDG00005019032)	aqp1a.1 (ENSMMDG00005019027)	CRHR2 (ENSMMDG00005018984)	myl13 (ENSMMDG00005018981)	pth1r (ENSMMDG00005018980)	tmie (ENSMMDG00005018978)	ENSMMDG00005018976	HIGD1A (ENSMMDG00005018974)	gjc2 (ENSMMDG00005018971) #27	iba57 (ENSMMDG00005018970) #28	jmjd4 (ENSMMDG00005018968) #19	snap47 (ENSMMDG00005018967) #20	wnt9a (ENSMMDG00005018960) #21	wnt3a (ENSMMDG00005018957) #22	ENSMMDG00005018955 ##23	zgc:63882 (ENSMMDG00005018953) #24	guk1a (ENSMMDG00005018952) #26	ENSMMDG00005018950 ##29	ENSMMDG00005018949 ##29	ENSMMDG00005018948	ENSMMDG00005018946 #29	ENSMMDG00005018940	ENSMMDG00005018935	ENSMMDG00005018933	ENSMMDG00005018931	ENSMMDG00005018930	ENSMMDG00005018928	ENSMMDG00005018927	atg9b (ENSMMDG00005018926)
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.u.b ##29	ENSGT00940000154756.B.u.a ##29	ENSGT00940000178390	ENSGT00940000168428.a	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.v ##29	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805
Tiger tail seahorse	MODERN SPECIES	277	igfbp1b (ENSHCOG00000020561)	adcy1b (ENSHCOG00000020550)	SIRT5 (ENSHCOG00000020510)	PHACTR1 (ENSHCOG00000020494)	PHLPP1 (ENSHCOG00000020453)	MEP1B (ENSHCOG00000020393)	opn7a (ENSHCOG00000020385)	ripk1l (ENSHCOG00000020345)	dusp22b (ENSHCOG00000020341)	irf4a (ENSHCOG00000020303)	foxq1a (ENSHCOG00000020294)	foxf2a (ENSHCOG00000020289)	foxc1a (ENSHCOG00000020281)	MYLK4 (ENSHCOG00000020269)	wrnip1 (ENSHCOG00000020254)	wnt3a (ENSHCOG00000020230) #22	ENSHCOG00000020217 ##23	zgc:63882 (ENSHCOG00000020206) #24	guk1a (ENSHCOG00000020183) #26	ENSHCOG00000020164 #29	ENSHCOG00000020136 #29	ENSHCOG00000020124	ENSHCOG00000020118	ENSHCOG00000020104	ENSHCOG00000020092	ENSHCOG00000020079 #29	atg9b (ENSHCOG00000020041)	asic1c (ENSHCOG00000020010)	zgc:92591 (ENSHCOG00000019677)	asb10 (ENSHCOG00000019668)	gbx1 (ENSHCOG00000019655)
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.u.b ##29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT01030000238439
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000168428.b.a	ENSGT00940000177273	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.u.a ##29	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00940000177117	ENSGT00940000168428.b.a	ENSGT00940000154756.B.v ##29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B.vb	ENSGT00980000198573.a.b.y.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B.vb	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276.c.b	ENSGT00940000153709.B.vb	ENSGT00940000154276.d	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000174427.b	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276.c.b	ENSGT00940000153709.B.vb	ENSGT00940000154276.d	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276.c.b	ENSGT00940000153709.B.vb.d	ENSGT00940000153709.B.vb.c	ENSGT00940000154276.c.a	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.u.a ##29	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Zebra mbuna	MODERN SPECIES	1100	ENSMZEG00005024965	myl13 (ENSMZEG00005024967)	pth1r (ENSMZEG00005024968)	tmie (ENSMZEG00005024972)	ENSMZEG00005024976	ENSMZEG00005024977	CYP8B1 (ENSMZEG00005024980)	CYP8B1 (ENSMZEG00005024983)	ENSMZEG00005024985	CYP8B1 (ENSMZEG00005024989)	gjc2 (ENSMZEG00005024991) #27	iba57 (ENSMZEG00005024992) #28	jmjd4 (ENSMZEG00005024993) #19	snap47 (ENSMZEG00005024995) #20	wnt9a (ENSMZEG00005024996) #21	wnt3a (ENSMZEG00005024998) #22	ENSMZEG00005025000 ##23	zgc:63882 (ENSMZEG00005025001) #24	guk1a (ENSMZEG00005025004) #26	ENSMZEG00005025005 #29	ENSMZEG00005025007	ENSMZEG00005025008	ENSMZEG00005025009	ENSMZEG00005025010 #29	ENSMZEG00005025011 #29	atg9b (ENSMZEG00005025014)	abcb8 (ENSMZEG00005025019)	cdk5 (ENSMZEG00005025020)	ENSMZEG00005025031	zgc:92591 (ENSMZEG00005025035)	asb10 (ENSMZEG00005025037)
Eastern happy	MODERN SPECIES	9	ENSACLG00000016982	myl13 (ENSACLG00000017019)	pth1r (ENSACLG00000017052)	tmie (ENSACLG00000017132)	ENSACLG00000017155	ENSACLG00000017176	CYP8B1 (ENSACLG00000017189)	ENSACLG00000017194	CYP8B1 (ENSACLG00000017216)	CYP8B1 (ENSACLG00000017220)	gjc2 (ENSACLG00000017240) #27	jmjd4 (ENSACLG00000017246) #19	iba57 (ENSACLG00000017284) #28	snap47 (ENSACLG00000017314) #20	wnt9a (ENSACLG00000017340) #21	wnt3a (ENSACLG00000017362) #22	ENSACLG00000017387 ##23	zgc:63882 (ENSACLG00000017397) #24	guk1a (ENSACLG00000017431) #26	ENSACLG00000017499 ##29	ENSACLG00000017538	ENSACLG00000017554	ENSACLG00000017562	ENSACLG00000017571	ENSACLG00000017577	ENSACLG00000017604 #29	ENSACLG00000017610 #29	ENSACLG00000017630 #29	atg9b (ENSACLG00000017683)	abcb8 (ENSACLG00000017717)	cdk5 (ENSACLG00000017765)
P. nyererei	MODERN SPECIES	299		ENSPNYG00000016879	ENSPNYG00000016533	myl13 (ENSPNYG00000016142)	pth1r (ENSPNYG00000016031)	tmie (ENSPNYG00000015997)	ENSPNYG00000015965	ENSPNYG00000015953	ENSPNYG00000015946	cyp8b1.2 (ENSPNYG00000015921)	gjc2 (ENSPNYG00000015914) #27	iba57 (ENSPNYG00000015909) #28	jmjd4 (ENSPNYG00000015884) #19	snap47 (ENSPNYG00000015873) #20	wnt9a (ENSPNYG00000015859) #21	wnt3a (ENSPNYG00000015848) #22	ENSPNYG00000015827 ##23	zgc:63882 (ENSPNYG00000015811) #24	guk1a (ENSPNYG00000015795) #26	ENSPNYG00000015759 #29	ENSPNYG00000015745 #29	ENSPNYG00000015731	ENSPNYG00000015724 #29	ENSPNYG00000015705 #29	ENSPNYG00000015682 #29	atg9b (ENSPNYG00000015643)	abcb8 (ENSPNYG00000015606)	cdk5 (ENSPNYG00000015568)	asic1c (ENSPNYG00000015547)	ENSPNYG00000015533	zgc:92591 (ENSPNYG00000015415)
Burton s mouthbrooder	MODERN SPECIES	271	aqp1a.1 (ENSHBUG00000008992)	crhr2 (ENSHBUG00000008951)	myl13 (ENSHBUG00000008874)	pth1r (ENSHBUG00000008845)	tmie (ENSHBUG00000008834)	ENSHBUG00000008801	ENSHBUG00000008777	CYP8B1 (ENSHBUG00000008767)	CYP8B1 (ENSHBUG00000008744)	ENSHBUG00000008737	gjc2 (ENSHBUG00000008716) #27	iba57 (ENSHBUG00000008688) #28	jmjd4 (ENSHBUG00000008703) #19	snap47 (ENSHBUG00000008680) #20	wnt9a (ENSHBUG00000008674) #21	wnt3a (ENSHBUG00000008645) #22	ENSHBUG00000008630 ##23	zgc:63882 (ENSHBUG00000008610) #24	guk1a (ENSHBUG00000008574) #26	ENSHBUG00000008537 #29	ENSHBUG00000008501 #29	ENSHBUG00000008485	ENSHBUG00000008466	ENSHBUG00000008454 #29	atg9b (ENSHBUG00000008427)	abcb8 (ENSHBUG00000008407)	cdk5 (ENSHBUG00000008311)	asic1c (ENSHBUG00000008202)	zgc:92591 (ENSHBUG00000008114)	asb10 (ENSHBUG00000008102)	gbx1 (ENSHBUG00000008078)
Lyretail cichlid	MODERN SPECIES	300											gjc2 (ENSNBRG00000011094) #27	iba57 (ENSNBRG00000011107) #28	jmjd4 (ENSNBRG00000011113) #19	snap47 (ENSNBRG00000011135) #20	wnt9a (ENSNBRG00000011153) #21	wnt3a (ENSNBRG00000011176) #22	ENSNBRG00000011196 ##23	zgc:63882 (ENSNBRG00000011218) #24	guk1a (ENSNBRG00000011244) #26	ENSNBRG00000011266	ENSNBRG00000011273 #29	ENSNBRG00000011285	ENSNBRG00000011300	ENSNBRG00000011318 #29	atg9b (ENSNBRG00000011390)	abcb8 (ENSNBRG00000011417)	cdk5 (ENSNBRG00000011455)	ENSNBRG00000011500	ENSNBRG00000011534	ENSNBRG00000011549	zgc:92591 (ENSNBRG00000011561)
Nile tilapia	MODERN SPECIES	9	pth1r (ENSONIG00000009467)	tmie (ENSONIG00000009471)	ENSONIG00000030390	ENSONIG00000009474	CYP8B1 (ENSONIG00000028061)	CYP8B1 (ENSONIG00000041327)	ENSONIG00000038031	CYP8B1 (ENSONIG00000037850)	CYP8B1 (ENSONIG00000031016)	CYP8B1 (ENSONIG00000039038)	gjc2 (ENSONIG00000009477) #27	iba57 (ENSONIG00000009479) #28	jmjd4 (ENSONIG00000032108) #19	snap47 (ENSONIG00000009481) #20	wnt9a (ENSONIG00000042511) #21	wnt3a (ENSONIG00000033810) #22	ENSONIG00000009484 ##23	zgc:63882 (ENSONIG00000009485) #24	guk1a (ENSONIG00000009487) #26	ENSONIG00000039684 ##29	atg9b (ENSONIG00000009497)	ENSONIG00000029280	abcb8 (ENSONIG00000009500)	cdk5 (ENSONIG00000009501)	ENSONIG00000043060	asic1c (ENSONIG00000009504)	zgc:92591 (ENSONIG00000009515)	asb10 (ENSONIG00000009516)	gbx1 (ENSONIG00000009520)	AGAP3 (ENSONIG00000009522)	RB1CC1 (ENSONIG00000009527)
Midas cichlid	MODERN SPECIES	117	aqp1a.1 (ENSACIG00000019342)	ENSACIG00000019334	CRHR2 (ENSACIG00000019316)	myl13 (ENSACIG00000019304)	pth1r (ENSACIG00000019265)	tmie (ENSACIG00000019246)	ENSACIG00000019227	ENSACIG00000019173	CYP8B1 (ENSACIG00000019154)	CYP8B1 (ENSACIG00000019115)	gjc2 (ENSACIG00000019110) #27	iba57 (ENSACIG00000019103) #28	jmjd4 (ENSACIG00000019092) #19	snap47 (ENSACIG00000019077) #20	wnt9a (ENSACIG00000019067) #21	wnt3a (ENSACIG00000019061) #22	ENSACIG00000019050 ##23	zgc:63882 (ENSACIG00000019038) #24	guk1a (ENSACIG00000019030) #26	ENSACIG00000019011 #29	ENSACIG00000019000 #29	ENSACIG00000018973	ENSACIG00000018960 #29	ENSACIG00000018941 #29	ENSACIG00000018934	abcb8 (ENSACIG00000018908)	cdk5 (ENSACIG00000018892)	ENSACIG00000018879	ENSACIG00000018864	ENSACIG00000018855	zgc:92591 (ENSACIG00000018847)
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a
Amphiprion	ANCESTRAL SPECIES	35	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a
Orange clownfish	MODERN SPECIES	1	AQP1 (ENSAPEG00000001189)	aqp1a.1 (ENSAPEG00000001197)	ENSAPEG00000001221	myl13 (ENSAPEG00000001762)	pth1r (ENSAPEG00000001806)	tmie (ENSAPEG00000001886)	ENSAPEG00000001898	ENSAPEG00000001932	CYP8B1 (ENSAPEG00000001945)	CYP8B1 (ENSAPEG00000001979)	GJC2 (ENSAPEG00000002012) #27	iba57 (ENSAPEG00000002017) #28	jmjd4 (ENSAPEG00000002030) #19	snap47 (ENSAPEG00000002042) #20	wnt9a (ENSAPEG00000002075) #21	wnt3a (ENSAPEG00000002089) #22	ENSAPEG00000002101 ##23	zgc:63882 (ENSAPEG00000002128) #24	guk1a (ENSAPEG00000002141) #26	ENSAPEG00000002168 ##29	ENSAPEG00000002230	ENSAPEG00000002250 ##29	ENSAPEG00000002271 #29	ENSAPEG00000002295 #29	ENSAPEG00000002309 #29	ENSAPEG00000002320 #29	ENSAPEG00000002326 #29	atg9b (ENSAPEG00000002365)	abcb8 (ENSAPEG00000002379)	cdk5 (ENSAPEG00000002446)	ENSAPEG00000002526
Clown anemonefish	MODERN SPECIES	865	aqp1a.1 (ENSAOCG00000019682)	ENSAOCG00000020148	myl13 (ENSAOCG00000020277)	pth1r (ENSAOCG00000001505)	tmie (ENSAOCG00000020407)	ENSAOCG00000020433	ENSAOCG00000020446	CYP8B1 (ENSAOCG00000020490)	CYP8B1 (ENSAOCG00000020508)	CYP8B1 (ENSAOCG00000020535)	gjc2 (ENSAOCG00000020543) #27	iba57 (ENSAOCG00000020555) #28	jmjd4 (ENSAOCG00000020561) #19	snap47 (ENSAOCG00000020572) #20	wnt9a (ENSAOCG00000020598) #21	wnt3a (ENSAOCG00000020607) #22	ENSAOCG00000002158 ##23	zgc:63882 (ENSAOCG00000001523) #24	guk1a (ENSAOCG00000020660) #26	ENSAOCG00000020708 #29	ENSAOCG00000020759 #29	ENSAOCG00000020793 #29	ENSAOCG00000020832 #29	atg9b (ENSAOCG00000020852)	abcb8 (ENSAOCG00000020931)	cdk5 (ENSAOCG00000021006)	ENSAOCG00000021063	zgc:92591 (ENSAOCG00000021083)	asb10 (ENSAOCG00000021104)	gbx1 (ENSAOCG00000021122)	AGAP3 (ENSAOCG00000021153)
Spiny chromis	MODERN SPECIES	1265															wnt9a (ENSAPOG00000015016) #21	wnt3a (ENSAPOG00000014993) #22	ENSAPOG00000014968 ##23	zgc:63882 (ENSAPOG00000014957) #24	guk1a (ENSAPOG00000014948) #26	ENSAPOG00000014922 ##29	ENSAPOG00000014849	ENSAPOG00000014830	ENSAPOG00000014807	ENSAPOG00000014781 #29
Bicolor damselfish	MODERN SPECIES	525	aqp1a.1 (ENSSPAG00000018540)	ENSSPAG00000018530	ENSSPAG00000018522	CRHR2 (ENSSPAG00000018491)	myl13 (ENSSPAG00000018467)	pth1r (ENSSPAG00000018428)	tmie (ENSSPAG00000018414)	ENSSPAG00000018351	HIGD1A (ENSSPAG00000018336)	cyp8b1.2 (ENSSPAG00000018294)	gjc2 (ENSSPAG00000018285) #27	iba57 (ENSSPAG00000018267) #28	jmjd4 (ENSSPAG00000018246) #19	snap47 (ENSSPAG00000018234) #20	wnt9a (ENSSPAG00000018206) #21	wnt3a (ENSSPAG00000018189) #22
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000168428.b.a	ENSGT00940000177473	ENSGT00940000154756.B.u.a ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974
Oryzias	ANCESTRAL SPECIES	12	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b.e	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000154756.B.u.a ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b.e	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT01030000238439
Indian medaka	MODERN SPECIES	10	usp14 (ENSOMEG00000008288)	thoc1 (ENSOMEG00000008200)	aqp1a.1 (ENSOMEG00000008141)	CRHR2 (ENSOMEG00000008086)	myl13 (ENSOMEG00000007996)	pth1r (ENSOMEG00000007963)	tmie (ENSOMEG00000007880)	ENSOMEG00000007854	HIGD1A (ENSOMEG00000007820)	cyp8b1.2 (ENSOMEG00000007776)	gjc2 (ENSOMEG00000007766) #27	iba57 (ENSOMEG00000007759) #28	jmjd4 (ENSOMEG00000007735) #19	snap47 (ENSOMEG00000007681) #20	wnt9a (ENSOMEG00000007660) #21	wnt3a (ENSOMEG00000007627) #22	ENSOMEG00000007598 ##23	guk1a (ENSOMEG00000007565) #26	ENSOMEG00000007519 ##29	ENSOMEG00000007491 ##29	ENSOMEG00000007479 ##29	ENSOMEG00000007470	ENSOMEG00000007455 #29	atg9b (ENSOMEG00000007421)	ENSOMEG00000000177	cdk5 (ENSOMEG00000007307)	asic1c (ENSOMEG00000007204)	asb10 (ENSOMEG00000007076)	gbx1 (ENSOMEG00000007015)	AGAP3 (ENSOMEG00000006957)	RB1CC1 (ENSOMEG00000006857)
Javanese ricefish	MODERN SPECIES	8	usp14 (ENSOJAG00000011584)	thoc1 (ENSOJAG00000011460)	aqp1a.1 (ENSOJAG00000011393)	CRHR2 (ENSOJAG00000009920)	myl13 (ENSOJAG00000009786)	pth1r (ENSOJAG00000009615)	tmie (ENSOJAG00000009593)	ENSOJAG00000022860	HIGD1A (ENSOJAG00000022856)	cyp8b1.2 (ENSOJAG00000022853)	gjc2 (ENSOJAG00000022848) #27	iba57 (ENSOJAG00000022843) #28	jmjd4 (ENSOJAG00000022839) #19	snap47 (ENSOJAG00000022836) #20	wnt9a (ENSOJAG00000022824) #21	wnt3a (ENSOJAG00000022812) #22	arf2b (ENSOJAG00000022804) ##23	zgc:63882 (ENSOJAG00000022794) #24	guk1a (ENSOJAG00000022785) #26	ENSOJAG00000022768 #29	ENSOJAG00000022738 #29	atg9b (ENSOJAG00000022732)	ENSOJAG00000022726	abcb8 (ENSOJAG00000022678)	ENSOJAG00000022672	asic1c (ENSOJAG00000022638)	asb10 (ENSOJAG00000022629)	gbx1 (ENSOJAG00000022627)	AGAP3 (ENSOJAG00000022147)	RB1CC1 (ENSOJAG00000022033)	ENSOJAG00000022018
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b.f	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00940000177473	ENSGT00940000154756.B.u.a ##29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Japanese Medaka HdrR	MODERN SPECIES	8	thoc1 (ENSORLG00000017629)	aqp1a.1 (ENSORLG00000017624)	ENSORLG00000024217	CRHR2 (ENSORLG00000017621)	myl13 (ENSORLG00000017618)	pth1r (ENSORLG00000017615)	tmie (ENSORLG00000023308)	ENSORLG00000017613	ENSORLG00000024205	cyp8b1.2 (ENSORLG00000017611)	gjc2 (ENSORLG00000022400) #27	iba57 (ENSORLG00000017609) #28	jmjd4 (ENSORLG00000017605) #19	snap47 (ENSORLG00000017602) #20	wnt9a (ENSORLG00000017600) #21	wnt3a (ENSORLG00000017597) #22	ENSORLG00000017594 ##23	zgc:63882 (ENSORLG00000017592) #24	guk1a (ENSORLG00000017581) #26	ENSORLG00000025989 ##29	ENSORLG00000028027 ##29	ENSORLG00000024770	ENSORLG00000026200	ENSORLG00000029183	ENSORLG00000030589 ##29	ENSORLG00000028404 ##29	ENSORLG00000022942 #29	atg9b (ENSORLG00000017550)	abcb8 (ENSORLG00000017547)	cdk5 (ENSORLG00000017539)	asic1c (ENSORLG00000017530)
Chinese medaka	MODERN SPECIES	770	rock1 (ENSOSIG00000012933)	usp14 (ENSOSIG00000014157)	thoc1 (ENSOSIG00000014336)	aqp1a.1 (ENSOSIG00000015128)	pth1r (ENSOSIG00000015179)	myl13 (ENSOSIG00000015238)	tmie (ENSOSIG00000015242)	ENSOSIG00000015243	HIGD1A (ENSOSIG00000015244)	cyp8b1.2 (ENSOSIG00000015245)	gjc2 (ENSOSIG00000015247) #27	iba57 (ENSOSIG00000015248) #28	jmjd4 (ENSOSIG00000015249) #19	snap47 (ENSOSIG00000015251) #20	wnt9a (ENSOSIG00000015254) #21	wnt3a (ENSOSIG00000015255) #22	ENSOSIG00000015298 ##23	zgc:63882 (ENSOSIG00000015300) #24	guk1a (ENSOSIG00000015302) #26	ENSOSIG00000015306 #29	ENSOSIG00000015309	atg9b (ENSOSIG00000015312)	abcb8 (ENSOSIG00000015397)	cdk5 (ENSOSIG00000015647)	asic1c (ENSOSIG00000015648)	asb10 (ENSOSIG00000015654)	gbx1 (ENSOSIG00000015657)	AGAP3 (ENSOSIG00000015672)	RB1CC1 (ENSOSIG00000015917)	ENSOSIG00000015922	pcmtd1 (ENSOSIG00000015923)
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.u.b ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.t.a	ENSGT00950000182846.a.a.b.a.a.f	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a
NAME_4	ANCESTRAL SPECIES	19	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871
Mummichog	MODERN SPECIES	314							tmie (ENSFHEG00000011194)	ENSFHEG00000011215	ENSFHEG00000011234	cyp8b1.2 (ENSFHEG00000011533)	gjc2 (ENSFHEG00000011554) #27	iba57 (ENSFHEG00000011625) #28	jmjd4 (ENSFHEG00000011607) #19	snap47 (ENSFHEG00000011639) #20	wnt9a (ENSFHEG00000011658) #21	wnt3a (ENSFHEG00000011672) #22	ENSFHEG00000011714 ##23	zgc:63882 (ENSFHEG00000011733) #24	guk1a (ENSFHEG00000011764) #26	ENSFHEG00000011803 #29	ENSFHEG00000011846 #29	ENSFHEG00000011884 #29	ENSFHEG00000011900 #29	ENSFHEG00000000698 #29	atg9b (ENSFHEG00000011940)	abcb8 (ENSFHEG00000011986)	cdk5 (ENSFHEG00000012060)	asic1c (ENSFHEG00000012088)	ENSFHEG00000012108	zgc:92591 (ENSFHEG00000012118)	gbx1 (ENSFHEG00000012128)
Sheepshead minnow	MODERN SPECIES	1226															wnt9a (ENSCVAG00000021651) #21	wnt3a (ENSCVAG00000021634) #22	ENSCVAG00000021619 ##23	zgc:63882 (ENSCVAG00000021607) #24	guk1a (ENSCVAG00000021594) #26
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Poecilia	ANCESTRAL SPECIES	16	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
NAME_6	ANCESTRAL SPECIES	11	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Amazon molly	MODERN SPECIES	279	usp14 (ENSPFOG00000022256)	thoc1 (ENSPFOG00000011673)	usp14 (ENSPFOG00000011610)	aqp1a.1 (ENSPFOG00000012026)	ENSPFOG00000012050	myl13 (ENSPFOG00000012174)	pth1r (ENSPFOG00000012205)	tmie (ENSPFOG00000012295)	ENSPFOG00000012324	ENSPFOG00000022784	gjc2 (ENSPFOG00000020360) #27	iba57 (ENSPFOG00000012415) #28	jmjd4 (ENSPFOG00000012431) #19	snap47 (ENSPFOG00000012485) #20	wnt9a (ENSPFOG00000012510) #21	wnt3a (ENSPFOG00000012574) #22	ENSPFOG00000022917 ##23	ENSPFOG00000012632 ##23	zgc:63882 (ENSPFOG00000012658) #24	guk1a (ENSPFOG00000012680) #26	ENSPFOG00000012723 #29	atg9b (ENSPFOG00000013009)	abcb8 (ENSPFOG00000013125)	cdk5 (ENSPFOG00000013234)	asic1c (ENSPFOG00000013248)	zgc:92591 (ENSPFOG00000013426)	asb10 (ENSPFOG00000013428)	gbx1 (ENSPFOG00000013479)	AGAP3 (ENSPFOG00000013509)	RB1CC1 (ENSPFOG00000013941)	ST18 (ENSPFOG00000014046)
Sailfin molly	MODERN SPECIES	2977																wnt3a (ENSPLAG00000014883) #22	ENSPLAG00000014863
Guppy	MODERN SPECIES	447	thoc1 (ENSPREG00000006719)	aqp1a.1 (ENSPREG00000006858)	aqp1a.1 (ENSPREG00000007361)	CRHR2 (ENSPREG00000007384)	myl13 (ENSPREG00000007439)	pth1r (ENSPREG00000007473)	tmie (ENSPREG00000007499)	ENSPREG00000007521	HIGD1A (ENSPREG00000007570)	cyp8b1.2 (ENSPREG00000007589)	gjc2 (ENSPREG00000007604) #27	iba57 (ENSPREG00000007620) #28	jmjd4 (ENSPREG00000007633) #19	snap47 (ENSPREG00000007648) #20	wnt9a (ENSPREG00000007669) #21	wnt3a (ENSPREG00000007694) #22	ENSPREG00000007723 ##23	zgc:63882 (ENSPREG00000007758) #24	guk1a (ENSPREG00000007797) #26	ENSPREG00000007829 #29	ENSPREG00000007865 #29	ENSPREG00000007891	ENSPREG00000007908 #29	ENSPREG00000007930 #29	atg9b (ENSPREG00000007948)	abcb8 (ENSPREG00000007968)	cdk5 (ENSPREG00000008002)	asic1c (ENSPREG00000008045)	zgc:92591 (ENSPREG00000008106)	asb10 (ENSPREG00000008118)	gbx1 (ENSPREG00000008139)
Platyfish	MODERN SPECIES	20	usp14 (ENSXMAG00000026959)	thoc1 (ENSXMAG00000002353)	aqp1a.1 (ENSXMAG00000022215)	ENSXMAG00000005843	myl13 (ENSXMAG00000022724)	pth1r (ENSXMAG00000005830)	tmie (ENSXMAG00000005826)	ENSXMAG00000005821	ENSXMAG00000005817	cyp8b1.2 (ENSXMAG00000019819)	gjc2 (ENSXMAG00000005815) #27	iba57 (ENSXMAG00000029078) #28	jmjd4 (ENSXMAG00000028952) #19	snap47 (ENSXMAG00000005805) #20	wnt9a (ENSXMAG00000005793) #21	wnt3a (ENSXMAG00000005789) #22	ENSXMAG00000005788 ##23	zgc:63882 (ENSXMAG00000005776) #24	guk1a (ENSXMAG00000027618) #26	ENSXMAG00000026855 #29	ENSXMAG00000029214	ENSXMAG00000023267 ##29	ENSXMAG00000027041 #29	ENSXMAG00000024038 #29	ENSXMAG00000021592 #29	atg9b (ENSXMAG00000005722)	abcb8 (ENSXMAG00000006347)	cdk5 (ENSXMAG00000018810)	ENSXMAG00000010416	zgc:92591 (ENSXMAG00000018881)	asb10 (ENSXMAG00000018883)
Aplocheiloidei	ANCESTRAL SPECIES	11	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.u.b ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871
Turquoise killifish	MODERN SPECIES	1618	aqp1a.1 (ENSNFUG00015011449)	ENSNFUG00015011474	ENSNFUG00015011482	ENSNFUG00015011490	PTH1RA (ENSNFUG00015011505)	TMIE (ENSNFUG00015011599)	CCDC13 (ENSNFUG00015011602)	HIGD1A (ENSNFUG00015011627)	ENSNFUG00015011637	cyp8b1.2 (ENSNFUG00015011644)	CX47.1 (ENSNFUG00015011652) #27	IBA57 (ENSNFUG00015011660) #28	JMJD4 (ENSNFUG00015011664) #19	snap47 (ENSNFUG00015011673) #20	wnt9a (ENSNFUG00015011683) #21	wnt3a (ENSNFUG00015011740) #22	ENSNFUG00015011792 ##23	C2H1ORF35 (ENSNFUG00015011822) #24	GUK1 (ENSNFUG00015011837) #26	ATG9B (ENSNFUG00015012089)	abcb8 (ENSNFUG00015012139)	cdk5 (ENSNFUG00015012468)	asic1c (ENSNFUG00015012539)	ENSNFUG00015012546	zgc:92591 (ENSNFUG00015012548)	asb10 (ENSNFUG00015012552)	GBX1 (ENSNFUG00015012554)	AGAP3 (ENSNFUG00015012655)	ENSNFUG00015016065	RB1CC1 (ENSNFUG00015016079)	ST18 (ENSNFUG00015016175)
Mangrove rivulus	MODERN SPECIES	88	thoc1 (ENSKMAG00000003904)	AQP1 (ENSKMAG00000004001)	aqp1a.1 (ENSKMAG00000004014)	CRHR2 (ENSKMAG00000004038)	myl13 (ENSKMAG00000004087)	pth1r (ENSKMAG00000004127)	tmie (ENSKMAG00000004138)	ENSKMAG00000004148	CYP8B1 (ENSKMAG00000004172)	CYP8B1 (ENSKMAG00000004185)	gjc2 (ENSKMAG00000004197) #27	iba57 (ENSKMAG00000004213) #28	jmjd4 (ENSKMAG00000004220) #19	snap47 (ENSKMAG00000004252) #20	wnt9a (ENSKMAG00000004277) #21	wnt3a (ENSKMAG00000004304) #22	ENSKMAG00000004334 ##23	zgc:63882 (ENSKMAG00000004347) #24	guk1a (ENSKMAG00000004364) #26	ENSKMAG00000004392 ##29	ENSKMAG00000004409 ##29	ENSKMAG00000004430 ##29	ENSKMAG00000004461 #29	atg9b (ENSKMAG00000004505)	abcb8 (ENSKMAG00000004537)	cdk5 (ENSKMAG00000004590)	asic1c (ENSKMAG00000004633)	zgc:92591 (ENSKMAG00000004698)	asb10 (ENSKMAG00000004706)	gbx1 (ENSKMAG00000004719)	AGAP3 (ENSKMAG00000004760)
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00940000177117	ENSGT00940000168428.b.a	ENSGT00940000154756.B.v ##29	ENSGT00940000177473	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974
Eupercaria	ANCESTRAL SPECIES	24	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Tetraodontidae	ANCESTRAL SPECIES	30	ENSGT00390000016232	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a
Fugu	MODERN SPECIES	14	CYP8B1 (ENSTRUG00000027928)	CRHR2 (ENSTRUG00000013656)	myl3 (ENSTRUG00000013808)	pth1r (ENSTRUG00000013866)	tmie (ENSTRUG00000013972)	ENSTRUG00000027905	higd1a (ENSTRUG00000013991)	CYP8B1 (ENSTRUG00000024163)	CYP8B1 (ENSTRUG00000029022)	CYP8B1 (ENSTRUG00000030959)	gjc2 (ENSTRUG00000014012) #27	iba57 (ENSTRUG00000021920) #28	jmjd4 (ENSTRUG00000022722) #19	snap47 (ENSTRUG00000014070) #20	wnt9a (ENSTRUG00000014101) #21	wnt3a (ENSTRUG00000014272) #22	arf2b (ENSTRUG00000014380) ##23	zgc:63882 (ENSTRUG00000014402) #24	guk1 (ENSTRUG00000014441) #26	atg9b (ENSTRUG00000002303)	abcb8 (ENSTRUG00000003209)	cdk5 (ENSTRUG00000004034)	asic1c (ENSTRUG00000004514)	zgc:92591 (ENSTRUG00000020180)	asb10 (ENSTRUG00000005244)	gbx1 (ENSTRUG00000005470)	AGAP3 (ENSTRUG00000005543)	RB1CC1 (ENSTRUG00000005744)	ST18 (ENSTRUG00000006078)	pcmtd1 (ENSTRUG00000023062)	SNTG1 (ENSTRUG00000006540)
Tetraodon	MODERN SPECIES	7	aqp1a.1 (ENSTNIG00000008474)	CYP8B1 (ENSTNIG00000008475)	CRHR2 (ENSTNIG00000000184)	myl13 (ENSTNIG00000008476)	pth1r (ENSTNIG00000008477)	tmie (ENSTNIG00000008478)	ENSTNIG00000008479	HIGD1A (ENSTNIG00000001241)	CYP8B1 (ENSTNIG00000008480)	ENSTNIG00000008481	gjc2 (ENSTNIG00000008482) #27	iba57 (ENSTNIG00000008483) #28	jmjd4 (ENSTNIG00000008484) #19	snap47 (ENSTNIG00000008485) #20	wnt9a (ENSTNIG00000008486) #21	wnt3a (ENSTNIG00000008487) #22	zgc:63882 (ENSTNIG00000008488) #24	guk1a (ENSTNIG00000008489) #26	guk1a (ENSTNIG00000008491) #26	ENSTNIG00000008490 #29	atg9b (ENSTNIG00000008492)	abcb8 (ENSTNIG00000008493)	ENSTNIG00000008494	ENSTNIG00000001162	asic1c (ENSTNIG00000008495)	zgc:92591 (ENSTNIG00000008496)	asb10 (ENSTNIG00000008497)	gbx1 (ENSTNIG00000008498)	AGAP3 (ENSTNIG00000008499)	RB1CC1 (ENSTNIG00000008500)	ST18 (ENSTNIG00000008501)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Ballan wrasse	MODERN SPECIES	336																wnt3a (ENSLBEG00000002020) #22	arf1 (ENSLBEG00000001998)	zgc:63882 (ENSLBEG00000001982) #24	guk1a (ENSLBEG00000001931) #26	ENSLBEG00000001872 #29	ENSLBEG00000001837	ENSLBEG00000001816	ENSLBEG00000001714 #29	ENSLBEG00000001687 #29	ENSLBEG00000001649 #29	ENSLBEG00000001624	abcb8 (ENSLBEG00000001537)	cdk5 (ENSLBEG00000001455)	ENSLBEG00000001420	ENSLBEG00000001405	zgc:92591 (ENSLBEG00000001382)
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT01030000238439
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a
Gilthead seabream	MODERN SPECIES	13	usp14 (ENSSAUG00010022472)	thoc1 (ENSSAUG00010023081)	AQP1 (ENSSAUG00010023120)	CRHR2 (ENSSAUG00010023148)	myl13 (ENSSAUG00010023495)	pth1r (ENSSAUG00010023506)	tmie (ENSSAUG00010023529)	ENSSAUG00010023531	HIGD1A (ENSSAUG00010023533)	cyp8b1.2 (ENSSAUG00010023534)	gjc2 (ENSSAUG00010023535) #27	iba57 (ENSSAUG00010023536) #28	jmjd4 (ENSSAUG00010002799) #19	snap47 (ENSSAUG00010002815) #20	wnt9a (ENSSAUG00010002844) #21	wnt3a (ENSSAUG00010002897) #22	guk1a (ENSSAUG00010002929) #26	zgc:63882 (ENSSAUG00010002941) #24	ENSSAUG00010002946 #29	atg9b (ENSSAUG00010002962)	abcb8 (ENSSAUG00010002978)	cdk5 (ENSSAUG00010003127)	asic1c (ENSSAUG00010003193)	zgc:92591 (ENSSAUG00010003641)	asb10 (ENSSAUG00010003644)	gbx1 (ENSSAUG00010003647)	AGAP3 (ENSSAUG00010003720)	RB1CC1 (ENSSAUG00010006685)	ENSSAUG00010006749	pcmtd1 (ENSSAUG00010006752)	SNTG1 (ENSSAUG00010006754)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a
European seabass	MODERN SPECIES		usp14 (ENSDLAG00005005886)	thoc1 (ENSDLAG00005005522)	aqp1a.2 (ENSDLAG00005028540)	ENSDLAG00005029462	aqp1a.1 (ENSDLAG00005005353)	ENSDLAG00005026637	ENSDLAG00005030068	myl13 (ENSDLAG00005003140)	tmie (ENSDLAG00005002754)	ENSDLAG00005002661	ENSDLAG00005030746	pth1r (ENSDLAG00005028827)	jmjd4 (ENSDLAG00005026039) #19	snap47 (ENSDLAG00005026038) #20	wnt9a (ENSDLAG00005026035) #21	wnt3a (ENSDLAG00005026033) #22	ENSDLAG00005033446 ##23	C1orf35 (ENSDLAG00005030355) #24	GUK1 (ENSDLAG00005026026) #26	ENSDLAG00005026018 #29	atg9b (ENSDLAG00005026009)	ENSDLAG00005025991	cdk5 (ENSDLAG00005025973)	asic1c (ENSDLAG00005025961)	zgc:92591 (ENSDLAG00005021322)	asb10 (ENSDLAG00005025956)	gbx1 (ENSDLAG00005026693)	AGAP3 (ENSDLAG00005025915)	RB1CC1 (ENSDLAG00005025897)	ST18 (ENSDLAG00005025891)	pcmtd1 (ENSDLAG00005025888)
Large yellow croaker	MODERN SPECIES	1	aqp1a.2 (ENSLCRG00005018662)	ENSLCRG00005018664	aqp1a.1 (ENSLCRG00005018666)	CRHR2 (ENSLCRG00005018677)	myl13 (ENSLCRG00005019468)	pth1r (ENSLCRG00005019470)	tmie (ENSLCRG00005019482)	ENSLCRG00005019484	HIGD1A (ENSLCRG00005019487)	CYP8B1 (ENSLCRG00005019488)	gjc2 (ENSLCRG00005019490) #27	iba57 (ENSLCRG00005019491) #28	jmjd4 (ENSLCRG00005019492) #19	snap47 (ENSLCRG00005019493) #20	wnt9a (ENSLCRG00005019494) #21	wnt3a (ENSLCRG00005019495) #22	ENSLCRG00005019500 ##23	zgc:63882 (ENSLCRG00005019501) #24	guk1a (ENSLCRG00005019504) #26	atg9b (ENSLCRG00005019515)	abcb8 (ENSLCRG00005019519)	cdk5 (ENSLCRG00005019567)	asic1c (ENSLCRG00005019590)	zgc:92591 (ENSLCRG00005019609)	asb10 (ENSLCRG00005000087)	gbx1 (ENSLCRG00005000099)	AGAP3 (ENSLCRG00005000222)	RB1CC1 (ENSLCRG00005000402)	pcmtd1 (ENSLCRG00005000459)	SNTG1 (ENSLCRG00005000463)	SNAI2 (ENSLCRG00005000465)
Perciformes	ANCESTRAL SPECIES	5	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT01030000238439
Cottioidei	ANCESTRAL SPECIES	22	ENSGT00390000009615	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.B.v ##29	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Stickleback	MODERN SPECIES	2	CRHR2 (ENSGACG00000017393)	ENSGACG00000017395	ENSGACG00000017397	ENSGACG00000017399	myl13 (ENSGACG00000017400)	pth1r (ENSGACG00000017402)	ENSGACG00000017406	HIGD1A (ENSGACG00000017408)	cyp8b1.2 (ENSGACG00000017414)	gjc2 (ENSGACG00000017416) #27	ndufa12 (ENSGACG00000017417)	iba57 (ENSGACG00000017421) #28	jmjd4 (ENSGACG00000017425) #19	snap47 (ENSGACG00000017427) #20	wnt9a (ENSGACG00000017431) #21	wnt3a (ENSGACG00000017433) #22	ENSGACG00000017437 ##23	zgc:63882 (ENSGACG00000017444) #24	guk1a (ENSGACG00000017446) #26	OBSCN (ENSGACG00000017451) #29	ENSGACG00000017473	ENSGACG00000017475	ADARB2 (ENSGACG00000017477)	wdr37 (ENSGACG00000017480)	gtpbp4 (ENSGACG00000017481)	LARP4B (ENSGACG00000017535)	ENSGACG00000017538	DIP2C (ENSGACG00000017540)	zmynd11 (ENSGACG00000017546)	VIPR2 (ENSGACG00000017549)	ESYT2 (ENSGACG00000017553)
Lumpfish	MODERN SPECIES	8	cables1 (ENSCLMG00005001909)	usp14 (ENSCLMG00005001846)	thoc1 (ENSCLMG00005001824)	aqp1a.1 (ENSCLMG00005001820)	CRHR2 (ENSCLMG00005001756)	myl13 (ENSCLMG00005001751)	pth1r (ENSCLMG00005001739)	ENSCLMG00005001727	HIGD1A (ENSCLMG00005001723)	cyp8b1.2 (ENSCLMG00005001718)	gjc2 (ENSCLMG00005001710) #27	iba57 (ENSCLMG00005001701) #28	jmjd4 (ENSCLMG00005001690) #19	snap47 (ENSCLMG00005001677) #20	wnt9a (ENSCLMG00005001627) #21	wnt3a (ENSCLMG00005001396) #22	ENSCLMG00005022861 ##23	zgc:63882 (ENSCLMG00005022860) #24	guk1a (ENSCLMG00005022859) #26	ENSCLMG00005022858 ##29	ENSCLMG00005022857	ENSCLMG00005022856 ##29	ENSCLMG00005022855 #29	ENSCLMG00005022854 #29	ENSCLMG00005022853 #29	atg9b (ENSCLMG00005022852)	abcb8 (ENSCLMG00005022843)	ENSCLMG00005022839	ENSCLMG00005022837	zgc:92591 (ENSCLMG00005022836)	asb10 (ENSCLMG00005022834)
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00390000016232	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905
Channel bull blenny	MODERN SPECIES	8	usp14 (ENSCGOG00000022781)	thoc1 (ENSCGOG00000023088)	aqp1a.1 (ENSCGOG00000001718)	CRHR2 (ENSCGOG00000001764)	myl13 (ENSCGOG00000001925)	pth1r (ENSCGOG00000001928)	tmie (ENSCGOG00000001936)	ENSCGOG00000001939	HIGD1A (ENSCGOG00000001945)	cyp8b1.2 (ENSCGOG00000001953)	gjc2 (ENSCGOG00000001961) #27	jmjd4 (ENSCGOG00000001963) #19	iba57 (ENSCGOG00000001966) #28	snap47 (ENSCGOG00000001968) #20	wnt9a (ENSCGOG00000001970) #21	wnt3a (ENSCGOG00000001974) #22	ENSCGOG00000001978 ##23	zgc:63882 (ENSCGOG00000002002) #24	guk1a (ENSCGOG00000002003) #26	ENSCGOG00000002005 #29	atg9b (ENSCGOG00000002008)	abcb8 (ENSCGOG00000002017)	cdk5 (ENSCGOG00000002062)	asic1c (ENSCGOG00000002255)	zgc:92591 (ENSCGOG00000002261)	asb10 (ENSCGOG00000002262)	ENSCGOG00000002263	gbx1 (ENSCGOG00000002264)	AGAP3 (ENSCGOG00000002284)	RB1CC1 (ENSCGOG00000003090)	ST18 (ENSCGOG00000003832)
Pike perch	MODERN SPECIES	12	ENSSLUG00000018556	ENSSLUG00000018561	aqp1a.1 (ENSSLUG00000018571)	CRHR2 (ENSSLUG00000018592)	myl13 (ENSSLUG00000018628)	pth1r (ENSSLUG00000018670)	tmie (ENSSLUG00000018825)	ENSSLUG00000018836	ENSSLUG00000018846	CYP8B1 (ENSSLUG00000018852)	gjc2 (ENSSLUG00000018864) #27	iba57 (ENSSLUG00000018866) #28	jmjd4 (ENSSLUG00000018868) #19	snap47 (ENSSLUG00000018881) #20	wnt9a (ENSSLUG00000018906) #21	wnt3a (ENSSLUG00000018926) #22	ENSSLUG00000018944 ##23	zgc:63882 (ENSSLUG00000018953) #24	guk1a (ENSSLUG00000018960) #26	ENSSLUG00000018971	ENSSLUG00000018980 #29	atg9b (ENSSLUG00000018999)	abcb8 (ENSSLUG00000019021)	cdk5 (ENSSLUG00000000174)	asic1c (ENSSLUG00000000195)	zgc:92591 (ENSSLUG00000000212)	asb10 (ENSSLUG00000000218)	gbx1 (ENSSLUG00000000221)	AGAP3 (ENSSLUG00000000399)	RB1CC1 (ENSSLUG00000000803)	ENSSLUG00000000830
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00940000177117	ENSGT00940000154756.B.v ##29	ENSGT00940000177473	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00390000016232	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT01030000238439
Zig-zag eel	MODERN SPECIES	8	usp14 (ENSMAMG00000016793)	ENSMAMG00000016747	ENSMAMG00000016691	aqp1a.1 (ENSMAMG00000016677)	ENSMAMG00000016423	myl13 (ENSMAMG00000027585)	pth1r (ENSMAMG00000026542)	ENSMAMG00000016340	ENSMAMG00000016327	cyp8b1.1 (ENSMAMG00000016300)	ENSMAMG00000016289 #27	iba57 (ENSMAMG00000016285) #28	jmjd4 (ENSMAMG00000016257) #19	snap47 (ENSMAMG00000016251) #20	wnt9a (ENSMAMG00000024682) #21	wnt3a (ENSMAMG00000025289) #22	ARF1 (ENSMAMG00000026228) ##23	C1orf35 (ENSMAMG00000016191) #24	GUK1 (ENSMAMG00000016176) #26	atg9b (ENSMAMG00000016043)	ENSMAMG00000016011	cdk5 (ENSMAMG00000016001)	ENSMAMG00000015979	ENSMAMG00000015966	ENSMAMG00000015963	zgc:92591 (ENSMAMG00000015956)	asb10 (ENSMAMG00000015919)	gbx1 (ENSMAMG00000015894)	AGAP3 (ENSMAMG00000015816)	RB1CC1 (ENSMAMG00000015728)	ENSMAMG00000026024
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00390000016232	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a
Siamese fighting fish	MODERN SPECIES	8	aqp1a.1 (ENSBSLG00000024418)	CRHR2 (ENSBSLG00000023968)	myl13 (ENSBSLG00000023835)	pth1r (ENSBSLG00000023679)	tmie (ENSBSLG00000023661)	ENSBSLG00000023653	ENSBSLG00000023645	ENSBSLG00000023644	ENSBSLG00000023633	ENSBSLG00000023632	gjc2 (ENSBSLG00000023626) #27	iba57 (ENSBSLG00000023623) #28	jmjd4 (ENSBSLG00000023617) #19	snap47 (ENSBSLG00000023611) #20	wnt9a (ENSBSLG00000023589) #21	wnt3a (ENSBSLG00000023563) #22	ENSBSLG00000023555 ##23	zgc:63882 (ENSBSLG00000023546) #24	guk1a (ENSBSLG00000023536) #26	ENSBSLG00000023512 #29	ENSBSLG00000023505	ENSBSLG00000023479 #29	atg9b (ENSBSLG00000023448)	abcb8 (ENSBSLG00000023174)	ENSBSLG00000023120	ENSBSLG00000023102	cdk5 (ENSBSLG00000023063)	asic1c (ENSBSLG00000022942)	zgc:92591 (ENSBSLG00000022917)	asb10 (ENSBSLG00000022907)	gbx1 (ENSBSLG00000022901)
Climbing perch	MODERN SPECIES	8	thoc1 (ENSATEG00000004783)	aqp1a.2 (ENSATEG00000004873)	aqp1a.1 (ENSATEG00000004913)	ENSATEG00000004965	myl13 (ENSATEG00000005368)	pth1r (ENSATEG00000005394)	tmie (ENSATEG00000005437)	ENSATEG00000005460	ENSATEG00000005470	cyp8b1.1 (ENSATEG00000005479)	ENSATEG00000025525 #27	iba57 (ENSATEG00000025675) #28	jmjd4 (ENSATEG00000005536) #19	snap47 (ENSATEG00000030148) #20	wnt9a (ENSATEG00000005551) #21	wnt3a (ENSATEG00000005584) #22	ARF1 (ENSATEG00000001951) ##23	C1orf35 (ENSATEG00000005635) #24	GUK1 (ENSATEG00000027879) #26	ENSATEG00000005687 ##29	atg9b (ENSATEG00000005911)	ENSATEG00000005929	cdk5 (ENSATEG00000005993)	asic1c (ENSATEG00000006062)	zgc:92591 (ENSATEG00000006171)	asb10 (ENSATEG00000006447)	gbx1 (ENSATEG00000028764)	AGAP3 (ENSATEG00000006574)	RB1CC1 (ENSATEG00000006655)	ENSATEG00000029591	pcmtd1 (ENSATEG00000006834)
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586
Seriola	ANCESTRAL SPECIES		ENSGT00390000016232	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00940000177117	ENSGT00940000154756.B.v ##29	ENSGT00940000168428.b.b.a	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a
Greater amberjack	MODERN SPECIES	99	aqp1a.2 (ENSSDUG00000016876)	AQP1 (ENSSDUG00000016898)	aqp1a.1 (ENSSDUG00000016906)	CRHR2 (ENSSDUG00000016946)	myl13 (ENSSDUG00000016961)	pth1r (ENSSDUG00000016977)	ENSSDUG00000017086	tmie (ENSSDUG00000017093)	ENSSDUG00000017107	HIGD1A (ENSSDUG00000017144)	gjc2 (ENSSDUG00000017183) #27	iba57 (ENSSDUG00000017191) #28	jmjd4 (ENSSDUG00000017200) #19	snap47 (ENSSDUG00000017216) #20	wnt9a (ENSSDUG00000017231) #21	wnt3a (ENSSDUG00000017246) #22	ENSSDUG00000017254 ##23	zgc:63882 (ENSSDUG00000017274) #24	guk1a (ENSSDUG00000017302) #26	ENSSDUG00000017345 #29	ENSSDUG00000017370 #29	ENSSDUG00000017384	ENSSDUG00000017391 ##29	ENSSDUG00000017412 #29	ENSSDUG00000017420 #29	ENSSDUG00000017429 #29	ENSSDUG00000017448	abcb8 (ENSSDUG00000017474)	cdk5 (ENSSDUG00000017508)	asic1c (ENSSDUG00000017542)	ENSSDUG00000017561
Yellowtail amberjack	MODERN SPECIES	2638	thoc1 (ENSSLDG00000015555)	aqp1a.2 (ENSSLDG00000015468)	ENSSLDG00000014591	aqp1a.1 (ENSSLDG00000014278)	CRHR2 (ENSSLDG00000014223)	myl13 (ENSSLDG00000014203)	pth1r (ENSSLDG00000014154)	tmie (ENSSLDG00000014142)	ENSSLDG00000014119	HIGD1A (ENSSLDG00000014111)	gjc2 (ENSSLDG00000014076) #27	iba57 (ENSSLDG00000014059) #28	jmjd4 (ENSSLDG00000014043) #19	snap47 (ENSSLDG00000014027) #20	wnt9a (ENSSLDG00000014002) #21	wnt3a (ENSSLDG00000013961) #22	ENSSLDG00000013951 ##23	zgc:63882 (ENSSLDG00000013938) #24	guk1a (ENSSLDG00000013903) #26	ENSSLDG00000013874 ##29	ENSSLDG00000013851	ENSSLDG00000013840 ##29	ENSSLDG00000013825	ENSSLDG00000013810	ENSSLDG00000013785 ##29	ENSSLDG00000013764 #29	atg9b (ENSSLDG00000013737)	abcb8 (ENSSLDG00000013646)	cdk5 (ENSSLDG00000013609)	asic1c (ENSSLDG00000013563)	zgc:92591 (ENSSLDG00000013535)
Barramundi perch	MODERN SPECIES	69	aqp1a.2 (ENSLCAG00010003706)	ENSLCAG00010003721	aqp1a.1 (ENSLCAG00010003739)	CRHR2 (ENSLCAG00010003861)	myl13 (ENSLCAG00010004118)	pth1r (ENSLCAG00010004183)	tmie (ENSLCAG00010004361)	ENSLCAG00010004376	HIGD1A (ENSLCAG00010004378)	CYP8B1 (ENSLCAG00010004385)	gjc2 (ENSLCAG00010004391) #27	jmjd4 (ENSLCAG00010004400) #19	iba57 (ENSLCAG00010004408) #28	snap47 (ENSLCAG00010004413) #20	wnt9a (ENSLCAG00010004419) #21	wnt3a (ENSLCAG00010004433) #22	guk1a (ENSLCAG00010004457) #26	ENSLCAG00010004471 ##23	zgc:63882 (ENSLCAG00010004493) #24	ENSLCAG00010004502 #29	ENSLCAG00010004515	atg9b (ENSLCAG00010004522)	abcb8 (ENSLCAG00010004603)	cdk5 (ENSLCAG00010004830)	ENSLCAG00010004858	ENSLCAG00010004878	zgc:92591 (ENSLCAG00010004894)	asb10 (ENSLCAG00010004897)	gbx1 (ENSLCAG00010004902)	AGAP3 (ENSLCAG00010004970)	ENSLCAG00010005091
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.b.a	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A #29	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871
Turbot	MODERN SPECIES	19	aqp1a.2 (ENSSMAG00000018553)	ENSSMAG00000018569	aqp1a.1 (ENSSMAG00000018577)	ENSSMAG00000018589	myl13 (ENSSMAG00000018615)	pth1r (ENSSMAG00000018658)	tmie (ENSSMAG00000018676)	ENSSMAG00000018685	ENSSMAG00000018710	cyp8b1.1 (ENSSMAG00000024609)	ENSSMAG00000018725 #27	iba57 (ENSSMAG00000018740) #28	jmjd4 (ENSSMAG00000018731) #19	snap47 (ENSSMAG00000018755) #20	wnt9a (ENSSMAG00000018760) #21	wnt3a (ENSSMAG00000018775) #22	ENSSMAG00000018796 ##23	zgc:63882 (ENSSMAG00000018814) #24	GUK1 (ENSSMAG00000018836) #26	ENSSMAG00000018861 #29	atg9b (ENSSMAG00000018960)	ENSSMAG00000018981	cdk5 (ENSSMAG00000019009)	asic1c (ENSSMAG00000019049)	ENSSMAG00000025562	zgc:92591 (ENSSMAG00000019080)	asb10 (ENSSMAG00000019166)	gbx1 (ENSSMAG00000019176)	AGAP3 (ENSSMAG00000019184)	RB1CC1 (ENSSMAG00000019193)	ENSSMAG00000019253
Tongue sole	MODERN SPECIES	12	thoc1 (ENSCSEG00000012486)	AQP1 (ENSCSEG00000012458)	aqp1 (ENSCSEG00000012440)	CRHR2 (ENSCSEG00000012395)	myl13 (ENSCSEG00000012384)	pth1r (ENSCSEG00000012371)	tmie (ENSCSEG00000012362)	ENSCSEG00000012352	ENSCSEG00000012349	cyp8b1.2 (ENSCSEG00000012341)	gjc2 (ENSCSEG00000012339) #27	iba57 (ENSCSEG00000012331) #28	jmjd4 (ENSCSEG00000012318) #19	snap47 (ENSCSEG00000012311) #20	wnt9a (ENSCSEG00000012297) #21	wnt3a (ENSCSEG00000012289) #22	ENSCSEG00000012285 ##23	zgc:63882 (ENSCSEG00000012269) #24	guk1a (ENSCSEG00000012246) #26	si:ch73-52e5.2 (ENSCSEG00000012241)	them6 (ENSCSEG00000012235)	ENSCSEG00000012213	zgc:113531 (ENSCSEG00000012201)	ENSCSEG00000012182	b4galt2 (ENSCSEG00000012148)	atp6v0b (ENSCSEG00000012132)	kiss1ra (ENSCSEG00000012092)	ift22 (ENSCSEG00000012071)	ENSCSEG00000012051	ENSCSEG00000012047	MCOLN3 (ENSCSEG00000012017)
Cod	MODERN SPECIES	21	dusp22b (ENSGMOG00000005034)	irf4a (ENSGMOG00000028279)	foxq1a (ENSGMOG00000020500)	foxf2a (ENSGMOG00000034795)	foxc1a (ENSGMOG00000025975)	ENSGMOG00000013642	ENSGMOG00000008536	ENSGMOG00000029772	ENSGMOG00000008538	ENSGMOG00000008554	iba57 (ENSGMOG00000000358) #28	jmjd4 (ENSGMOG00000000368) #19	snap47 (ENSGMOG00000000380) #20	wnt9a (ENSGMOG00000000387) #21	ENSGMOG00000008528	wnt3a (ENSGMOG00000023810) #22	arf1 (ENSGMOG00000000429)	zgc:63882 (ENSGMOG00000031619) #24	guk1a (ENSGMOG00000010668) #26	ENSGMOG00000003217	ENSGMOG00000003192	ENSGMOG00000003158	asic1c (ENSGMOG00000003105)	zgc:92591 (ENSGMOG00000036273)	ENSGMOG00000002991	ENSGMOG00000024350	asb10 (ENSGMOG00000002971)	gbx1 (ENSGMOG00000031776)	AGAP3 (ENSGMOG00000002916)	RB1CC1 (ENSGMOG00000002866)	ENSGMOG00000028587
Protacanthopterygii	ANCESTRAL SPECIES	14	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a	ENSGT00940000156795	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00390000006465 #28	ENSGT00940000159380 #19	ENSGT00950000182843.b #20	ENSGT00940000159618 #21	ENSGT00940000160510 #22	ENSGT00940000165468	ENSGT00390000005590 #24	ENSGT00940000155815.q #26	ENSGT00940000154756.A #29	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905
Northern pike	MODERN SPECIES	2	aqp1a.2 (ENSELUG00000023139)	aqp1a.1 (ENSELUG00000023130)	CRHR2 (ENSELUG00000023088)	myl13 (ENSELUG00000023063)	pth1r (ENSELUG00000023004)	tmie (ENSELUG00000022982)	CCDC13 (ENSELUG00000022950)	hig1a (ENSELUG00000022924)	ACKR2 (ENSELUG00000001350)	cyp8b1.2 (ENSELUG00000026541)	gjc2 (ENSELUG00000022675) #27	iba57 (ENSELUG00000022717) #28	jmjd4 (ENSELUG00000022668) #19	snap47 (ENSELUG00000022622) #20	wnt9a (ENSELUG00000022603) #21	wnt3a (ENSELUG00000022562) #22	arf1 (ENSELUG00000022533)	zgc:63882 (ENSELUG00000022509) #24	guk1a (ENSELUG00000022500) #26	atg9b (ENSELUG00000022336)	abcb8 (ENSELUG00000022262)	cdk5 (ENSELUG00000022250)	asic1c (ENSELUG00000022201)	zgc:92591 (ENSELUG00000022181)	asb10 (ENSELUG00000022169)	gbx1 (ENSELUG00000022141)	AGAP3 (ENSELUG00000022117)	RB1CC1 (ENSELUG00000022064)	ST18 (ENSELUG00000021998)	pcmtd1 (ENSELUG00000021947)	SNTG1 (ENSELUG00000021900)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	24	ENSGT00390000009615.p	ENSGT00390000016232.v	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a.f	ENSGT00940000156795.j	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000158574.b	ENSGT00940000154276.h	ENSGT01020000230359.E	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e #27	ENSGT00390000006465 #28	ENSGT00940000159380.c #19	ENSGT00950000182843.b.i #20	ENSGT00940000159618.f #21	ENSGT00940000160510.e.a #22	ENSGT00940000165468.h.a	ENSGT00390000005590.c #24	ENSGT00940000155815.q.d #26	ENSGT00940000154756.A.bc.b #29	ENSGT00970000196942.a	ENSGT00390000014839.a.d	ENSGT00940000159126	ENSGT00940000160805.s.b	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c	ENSGT00940000159586.eb
Huchen	MODERN SPECIES	3303																wnt3a (ENSHHUG00000011503) #22	arf1 (ENSHHUG00000011493)	zgc:63882 (ENSHHUG00000011487) #24	guk1a (ENSHHUG00000011476) #26	ENSHHUG00000011465 ##29	ENSHHUG00000011457 ##29	ENSHHUG00000011446	ENSHHUG00000011351 #29	ENSHHUG00000011408 ##29
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a.f	ENSGT00940000156795.j	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000158574.b	ENSGT00940000164845.j	ENSGT00940000164845.i.b	ENSGT00940000154276.h	ENSGT01020000230359.E	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e #27	ENSGT00390000006465 #28	ENSGT00940000159380.c #19	ENSGT00950000182843.b.i #20	ENSGT00940000159618.f #21	ENSGT00940000160510.e.a #22	ENSGT00940000165468.h.a	ENSGT00390000005590.c #24	ENSGT00940000155815.q.d #26	ENSGT00940000154756.A.bc.b #29	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d	ENSGT00940000159126	ENSGT00940000160805.s.b	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c	ENSGT00940000159586.eb	ENSGT00390000015871.j	ENSGT00940000159905.x
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000157015.i.a.f	ENSGT00940000156795.j	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000158574.b	ENSGT00940000164845.j	ENSGT00990000212252	ENSGT00940000164845.i.b	ENSGT00940000154276.h.b	ENSGT01020000230359.E	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e #27	ENSGT00390000006465 #28	ENSGT00940000159380.c #19	ENSGT00950000182843.b.i #20	ENSGT00940000159618.f #21	ENSGT00940000160510.e.a #22	ENSGT00940000165468.h.a	ENSGT00390000005590.c #24	ENSGT00940000155815.q.d #26	ENSGT00940000154756.A.bc.b #29	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d	ENSGT00940000159126	ENSGT00940000160805.s.b	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c	ENSGT00940000159586.eb	ENSGT00390000015871.j	ENSGT00940000159905.x
River trout	MODERN SPECIES	13	aqp1a.2 (ENSSTUG00000013193)	aqp1a.1 (ENSSTUG00000013171)	CRHR2 (ENSSTUG00000012948)	myl13 (ENSSTUG00000012907)	pth1r (ENSSTUG00000012099)	ENSSTUG00000012072	ENSSTUG00000012065	ENSSTUG00000012056	ACKR2 (ENSSTUG00000012051)	CYP8B1 (ENSSTUG00000012048)	GJC2 (ENSSTUG00000012043) #27	iba57 (ENSSTUG00000012038) #28	ENSSTUG00000012020 #19	snap47 (ENSSTUG00000012009) #20	wnt9a (ENSSTUG00000011978) #21	wnt3a (ENSSTUG00000011959) #22	arf1 (ENSSTUG00000011952)	zgc:63882 (ENSSTUG00000011946) #24	guk1a (ENSSTUG00000011933) #26	ENSSTUG00000011909 #29	ENSSTUG00000011889 #29	ENSSTUG00000011809 #29	ENSSTUG00000011778	ENSSTUG00000011746	atg9b (ENSSTUG00000011733)	abcb8 (ENSSTUG00000011038)	cdk5 (ENSSTUG00000011004)	asic1c (ENSSTUG00000010965)	zgc:92591 (ENSSTUG00000010956)	gbx1 (ENSSTUG00000010950)	AGAP3 (ENSSTUG00000008467)
Atlantic salmon	MODERN SPECIES	5	AQPA (ENSSSAG00000062851)	ENSSSAG00000075241	MYL3 (ENSSSAG00000055222)	pth1r (ENSSSAG00000097651)	tmie (ENSSSAG00000050027)	ENSSSAG00000050009	ENSSSAG00000109327	ENSSSAG00000049907	ENSSSAG00000049904	ENSSSAG00000093231 #27	ENSSSAG00000097326	ENSSSAG00000121438	snap47 (ENSSSAG00000107907) #20	wnt9a (ENSSSAG00000049857) #21	ENSSSAG00000109403	wnt3a (ENSSSAG00000092832) #22	arf1 (ENSSSAG00000104948)	cssa14h1orf35 (ENSSSAG00000049571) #24	guk1 (ENSSSAG00000111657) #26	ENSSSAG00000049398 #29	ENSSSAG00000049346 #29	ENSSSAG00000049319	ENSSSAG00000049270	atg9b (ENSSSAG00000049245)	ENSSSAG00000048268	cdk5 (ENSSSAG00000111176)	asic1c (ENSSSAG00000074872)	zgc:92591 (ENSSSAG00000110359)	gbx1 (ENSSSAG00000047975)	ENSSSAG00000111763	AGAP3 (ENSSSAG00000045432)
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a.f	ENSGT00940000156795.j	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000158574.b	ENSGT00940000164845.j	ENSGT00940000164845.i.b	ENSGT00940000154276.h	ENSGT01020000230359.E	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e #27	ENSGT00390000006465 #28	ENSGT00940000159380.c #19	ENSGT00950000182843.b.i #20	ENSGT00940000159618.f #21	ENSGT00940000160510.e.a #22	ENSGT00940000165468.h.a	ENSGT00390000005590.c #24	ENSGT00940000155815.q.d #26	ENSGT00940000154756.A.bc.b #29	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d	ENSGT00940000159126	ENSGT00940000160805.s.b	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c	ENSGT00940000159586.eb	ENSGT00390000015871.j	ENSGT00940000159905.x
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000157015.i.b.b	ENSGT00940000157015.i.a.f	ENSGT00940000156795.j	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000158574.b	ENSGT00940000164845.j	ENSGT00940000164845.i.b	ENSGT00940000154276.h	ENSGT01020000230359.E	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e #27	ENSGT00390000006465 #28	ENSGT00940000159380.c #19	ENSGT00950000182843.b.i #20	ENSGT00940000159618.f #21	ENSGT00940000160510.e.a #22	ENSGT00940000165468.h.a	ENSGT00390000005590.c #24	ENSGT00940000155815.q.d #26	ENSGT00940000154756.A.bc.b #29	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d	ENSGT00940000159126	ENSGT00940000160805.s.b	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c	ENSGT00940000159586.eb	ENSGT00390000015871.j	ENSGT00940000159905.x
Chinook salmon	MODERN SPECIES	1	thoc1 (ENSOTSG00005026516)	aqp1a.2 (ENSOTSG00005026515)	aqp1a.1 (ENSOTSG00005026513)	CRHR2 (ENSOTSG00005024075)	myl13 (ENSOTSG00005024070)	pth1r (ENSOTSG00005024066)	tmie (ENSOTSG00005024065)	ENSOTSG00005024062	ACKR2 (ENSOTSG00005024061)	CYP8B1 (ENSOTSG00005024060)	GJC2 (ENSOTSG00005024059) #27	iba57 (ENSOTSG00005024057) #28	jmjd4 (ENSOTSG00005024055) #19	snap47 (ENSOTSG00005024050) #20	wnt9a (ENSOTSG00005024031) #21	wnt3a (ENSOTSG00005024029) #22	zgc:63882 (ENSOTSG00005024028) #24	guk1a (ENSOTSG00005024027) #26	ENSOTSG00005024025 #29	ENSOTSG00005024020	ENSOTSG00005024019	ENSOTSG00005024018	atg9b (ENSOTSG00005024017)	abcb8 (ENSOTSG00005022712)	cdk5 (ENSOTSG00005022708)	asic1c (ENSOTSG00005022638)	zgc:92591 (ENSOTSG00005022636)	gbx1 (ENSOTSG00005022634)	AGAP3 (ENSOTSG00005021973)	ENSOTSG00005021966	ENSOTSG00005021965
Coho salmon	MODERN SPECIES	23	aqp1a.2 (ENSOKIG00005047781)	aqp1a.1 (ENSOKIG00005047769)	ENSOKIG00005047764	CRHR2 (ENSOKIG00005046707)	myl13 (ENSOKIG00005046628)	pth1r (ENSOKIG00005046578)	ENSOKIG00005046562	ENSOKIG00005046557	ACKR2 (ENSOKIG00005046552)	CYP8B1 (ENSOKIG00005046550)	gjc2 (ENSOKIG00005046545) #27	ENSOKIG00005046534	IBA57 (ENSOKIG00005046527) #28	ENSOKIG00005046525	wnt9a (ENSOKIG00005046511) #21	wnt3a (ENSOKIG00005046495) #22	arf1 (ENSOKIG00005046487)	zgc:63882 (ENSOKIG00005046482) #24	guk1a (ENSOKIG00005046473) #26	ENSOKIG00005046469 #29	ENSOKIG00005046427 #29	ENSOKIG00005046413	ENSOKIG00005046410	ENSOKIG00005046399	atg9b (ENSOKIG00005046390)	abcb8 (ENSOKIG00005045671)	cdk5 (ENSOKIG00005045617)	asic1c (ENSOKIG00005045576)	zgc:92591 (ENSOKIG00005045562)	gbx1 (ENSOKIG00005045547)	AGAP3 (ENSOKIG00005044247)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000049119	aqp1a.1 (ENSOMYG00000032279)	ENSOMYG00000064052	ENSOMYG00000030141	ENSOMYG00000029440	ENSOMYG00000029278	ENSOMYG00000070524	ENSOMYG00000029076	ENSOMYG00000029066	ENSOMYG00000029052 #27	ENSOMYG00000068688	iba57 (ENSOMYG00000029038) #28	ENSOMYG00000029024	snap47 (ENSOMYG00000028963) #20	wnt9a (ENSOMYG00000028943) #21	wnt3a (ENSOMYG00000028815) #22	arf1 (ENSOMYG00000052393)	zgc:63882 (ENSOMYG00000028745) #24	guk1a (ENSOMYG00000028695) #26	ENSOMYG00000028625 #29	ENSOMYG00000028470 #29	ENSOMYG00000028365	ENSOMYG00000054775	ENSOMYG00000028303	atg9b (ENSOMYG00000028292)	ENSOMYG00000027030	cdk5 (ENSOMYG00000026617)	asic1c (ENSOMYG00000026444)	zgc:92591 (ENSOMYG00000067767)	gbx1 (ENSOMYG00000026337)	ENSOMYG00000053122
Salmoninae	ANCESTRAL SPECIES	86	ENSGT00390000009615.o	ENSGT00390000016232.u	ENSGT00940000157015.i.a.e	ENSGT00940000156795.i	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000158574.a	ENSGT00940000164845	ENSGT00390000000596	ENSGT01000000221856	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f #27	ENSGT00940000159380.d #19	ENSGT00950000182843.b.j #20	ENSGT00940000159618.e #21	ENSGT00940000160510.e.b #22	ENSGT00940000165468.h.b	ENSGT00390000005590.d #24	ENSGT00940000155815.q.c #26	ENSGT00940000154756.A.cc #29	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.bc.a #29	ENSGT00970000196942.b	ENSGT00390000014839.a.c	ENSGT00940000160805.s.a	ENSGT00940000164727.eb.b	ENSGT00940000158974	ENSGT00940000154365.a.a.d	ENSGT00940000159586.db	ENSGT00390000015871.i	ENSGT00940000159905.w
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00390000016232.u	ENSGT00940000157015.i.a.e	ENSGT00940000156795.i	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000158574.a	ENSGT00940000164845.i.a	ENSGT00390000000596	ENSGT01000000221856	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f #27	ENSGT00990000212116	ENSGT00940000159380.d #19	ENSGT00950000182843.b.j #20	ENSGT00940000159618.e #21	ENSGT00940000160510.e.b #22	ENSGT00940000165468.h.b	ENSGT00390000005590.d #24	ENSGT00940000155815.q.c #26	ENSGT00940000154756.A.cc #29	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.bc.a #29	ENSGT00970000196942.b	ENSGT00390000014839.a.c	ENSGT00940000160805.s.a	ENSGT00940000164727.eb.b	ENSGT00940000158974	ENSGT00940000154365.a.a.d	ENSGT00940000159586.db	ENSGT00390000015871.i	ENSGT00940000159905.w
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00390000016232.u	ENSGT00940000157015.i.a.e	ENSGT00940000156795.i	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000158574.a	ENSGT00940000164845.i.a	ENSGT00390000000596	ENSGT01000000221856	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f #27	ENSGT00990000212116	ENSGT00940000159380.d #19	ENSGT00950000182843.b.j #20	ENSGT00940000159618.e #21	ENSGT00940000160510.e.b #22	ENSGT00940000165468.h.b	ENSGT00390000005590.d #24	ENSGT00940000155815.q.c #26	ENSGT00940000154756.A.cc #29	ENSGT00970000196942.b	ENSGT00390000014839.a.c	ENSGT00940000160805.s.a	ENSGT00940000164727.eb.b	ENSGT00940000158974	ENSGT00940000154365.a.a.d	ENSGT00940000159586.db	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00390000016232.u	ENSGT00940000157015.i.a.e	ENSGT00940000156795.i	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000158574.a	ENSGT00940000164845.i.a	ENSGT00390000000596	ENSGT01000000221856	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f #27	ENSGT00990000212116	ENSGT00940000159380.d #19	ENSGT00950000182843.b.j #20	ENSGT00940000159618.e #21	ENSGT00940000160510.e.b #22	ENSGT00940000165468.h.b	ENSGT00390000005590.d #24	ENSGT00940000155815.q.c #26	ENSGT00940000154756.A.cc #29	ENSGT00970000196942.b	ENSGT00390000014839.a.c	ENSGT00940000160805.s.a	ENSGT00940000164727.eb.b	ENSGT00940000158974	ENSGT00940000154365.a.a.d	ENSGT00940000159586.db	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b
Chinook salmon	MODERN SPECIES	20	usp14 (ENSOTSG00005044095)	thoc1 (ENSOTSG00005044287)	aqp1a.1 (ENSOTSG00005044541)	ENSOTSG00005044545	myl13 (ENSOTSG00005045012)	pth1r (ENSOTSG00005045013)	tmie (ENSOTSG00005045014)	CCDC13 (ENSOTSG00005045016)	ENSOTSG00005045017	CYP8B1 (ENSOTSG00005045018)	gjc2 (ENSOTSG00005045019) #27	ENSOTSG00005045020	jmjd4 (ENSOTSG00005045021) #19	snap47 (ENSOTSG00005045023) #20	wnt9a (ENSOTSG00005045024) #21	wnt3a (ENSOTSG00005045026) #22	arf1 (ENSOTSG00005045028)	zgc:63882 (ENSOTSG00005025248) #24	guk1a (ENSOTSG00005025253) #26	ENSOTSG00005025260 #29	ENSOTSG00005025264 #29	ENSOTSG00005025265	atg9b (ENSOTSG00005025274)	ENSOTSG00005025276	asic1c (ENSOTSG00005025284)	ENSOTSG00005025419	asb10 (ENSOTSG00005025421)	gbx1 (ENSOTSG00005025423)	AGAP3 (ENSOTSG00005025446)	RB1CC1 (ENSOTSG00005029998)	ST18 (ENSOTSG00005030071)
Salmo	ANCESTRAL SPECIES	5	ENSGT00390000016232.u	ENSGT00940000157015.i.a.e	ENSGT00940000156795.i	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000158574.a	ENSGT00940000164845.i.a	ENSGT00390000000596	ENSGT00940000154276.h.a	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f #27	ENSGT00990000212116	ENSGT00940000159380.d #19	ENSGT00950000182843.b.j #20	ENSGT00940000159618.e #21	ENSGT00940000160510.e.b #22	ENSGT00940000165468.h.b	ENSGT00390000005590.d #24	ENSGT00940000155815.q.c #26	ENSGT00940000154756.A.cc #29	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.bc.a #29	ENSGT00970000196942.b	ENSGT00390000014839.a.c	ENSGT00940000160805.s.a	ENSGT00940000164727.eb.b	ENSGT00940000158974	ENSGT00940000154365.a.a.d	ENSGT00940000159586.db	ENSGT00390000015871.i	ENSGT00940000159905.w
River trout	MODERN SPECIES	24	thoc1 (ENSSTUG00000049604)	aqp1a.1 (ENSSTUG00000049734)	ENSSTUG00000049748	myl13 (ENSSTUG00000049932)	pth1r (ENSSTUG00000049940)	tmie (ENSSTUG00000049989)	CCDC13 (ENSSTUG00000049997)	ENSSTUG00000050002	CYP8B1 (ENSSTUG00000050003)	CYP8B1 (ENSSTUG00000050004)	ENSSTUG00000050006	jmjd4 (ENSSTUG00000050009) #19	snap47 (ENSSTUG00000050010) #20	ENSSTUG00000050014	wnt9a (ENSSTUG00000050016) #21	wnt3a (ENSSTUG00000050020) #22	arf1 (ENSSTUG00000050022)	zgc:63882 (ENSSTUG00000050024) #24	guk1a (ENSSTUG00000050025) #26	ENSSTUG00000050032 #29	ENSSTUG00000050038	ENSSTUG00000050046 #29	ENSSTUG00000050060	atg9b (ENSSTUG00000050065)	cdk5 (ENSSTUG00000050067)	asic1c (ENSSTUG00000050075)	asb10 (ENSSTUG00000050086)	gbx1 (ENSSTUG00000050089)	AGAP3 (ENSSTUG00000050108)	RB1CC1 (ENSSTUG00000050194)	ST18 (ENSSTUG00000050253)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000160510.f #22
Huchen	MODERN SPECIES	1308						pth1r (ENSHHUG00000049636)	tmie (ENSHHUG00000049674)	ENSHHUG00000049683	ACKR2 (ENSHHUG00000049686)	CYP8B1 (ENSHHUG00000049690)	GJC2 (ENSHHUG00000049697) #27	iba57 (ENSHHUG00000049699) #28	jmjd4 (ENSHHUG00000049701) #19	snap47 (ENSHHUG00000049705) #20	wnt9a (ENSHHUG00000049707) #21	ENSHHUG00000049708 #22
Osteoglossiformes	ANCESTRAL SPECIES	36	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000166913	ENSGT00940000154756.A #29	ENSGT00940000154756.B ##29	ENSGT00940000177473	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.q #26	ENSGT00390000005590 #24	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #22	ENSGT00940000159618 #21	ENSGT00950000182843.b #20	ENSGT00940000159380 #19	ENSGT00390000006465 #28	ENSGT01090000260005.a.a.a.b.a.a.a #27	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a	ENSGT00940000157015.i.b.a
P. kingsleyae	MODERN SPECIES	15	cdk5 (ENSPKIG00000005046)	abcb8 (ENSPKIG00000005114)	atg9b (ENSPKIG00000005206)	ENSPKIG00000005248	ENSPKIG00000005273 #29	ENSPKIG00000005292 ##29	ENSPKIG00000005312	ENSPKIG00000005320 ##29	ENSPKIG00000005336	ENSPKIG00000005347	ENSPKIG00000005378 #29	ENSPKIG00000005403	guk1a (ENSPKIG00000005424) #26	zgc:63882 (ENSPKIG00000005451) #24	ARF1 (ENSPKIG00000005488) #23	wnt3a (ENSPKIG00000005529) #22	ENSPKIG00000005553	wnt9a (ENSPKIG00000005561) #21	snap47 (ENSPKIG00000005577) #20	ENSPKIG00000005599	jmjd4 (ENSPKIG00000005607) #19	iba57 (ENSPKIG00000005623) #28	gjc2 (ENSPKIG00000005631) #27	ACKR2 (ENSPKIG00000005651)	ENSPKIG00000005659	CCDC13 (ENSPKIG00000005675)	tmie (ENSPKIG00000005694)	pth1r (ENSPKIG00000005707)	myl13 (ENSPKIG00000005729)	ENSPKIG00000005776	AQP1 (ENSPKIG00000005868)
Asian bonytongue	MODERN SPECIES	22	zgc:92591 (ENSSFOG00015028630)	asic1c (ENSSFOG00015009088)	cdk5 (ENSSFOG00015009165)	abcb8 (ENSSFOG00015009232)	atg9b (ENSSFOG00015009299)	ENSSFOG00015009318	ENSSFOG00015009333	ENSSFOG00015009339 #29	ENSSFOG00015009380 #29	ENSSFOG00015030541	ENSSFOG00015028600	ENSSFOG00015009441 #29	guk1a (ENSSFOG00015031278) #26	zgc:63882 (ENSSFOG00015009520) #24	ARF1 (ENSSFOG00015009538) #23	wnt3a (ENSSFOG00015009551) #22	wnt9a (ENSSFOG00015030621) #21	snap47 (ENSSFOG00015009631) #20	jmjd4 (ENSSFOG00015009681) #19	iba57 (ENSSFOG00015026995) #28	gjc2 (ENSSFOG00015009708) #27	ENSSFOG00015028458	CYP8B1 (ENSSFOG00015005627)	CYP8B1 (ENSSFOG00015026431)	CYP8B1 (ENSSFOG00015031207)	ACKR2 (ENSSFOG00015009784)	ENSSFOG00015009794	ENSSFOG00015009805	tmie (ENSSFOG00015014259)	pth1r (ENSSFOG00015014280)	myl13 (ENSSFOG00015014305)
Spotted gar	MODERN SPECIES	675	ENSLOCG00000009383	AGAP3 (ENSLOCG00000009358)	gbx1 (ENSLOCG00000009350)	asb10 (ENSLOCG00000009338)	zgc:153738 (ENSLOCG00000009323)	ENSLOCG00000018126	ENSLOCG00000009314	ENSLOCG00000009298	cdk5 (ENSLOCG00000009292)	abcb8 (ENSLOCG00000009275)	atg9b (ENSLOCG00000009263)	ENSLOCG00000009256	jmjd4 (ENSLOCG00000009240) #19	snap47 (ENSLOCG00000009233) #20	wnt9a (ENSLOCG00000009215) #21	wnt3a (ENSLOCG00000009208) #22	ARF1 (ENSLOCG00000009197) #23	zgc:63882 (ENSLOCG00000009188) #24	guk1b (ENSLOCG00000009170) #26	ENSLOCG00000009140 ##29	ENSLOCG00000009158 ##29	ENSLOCG00000009134 #29	ENSLOCG00000009126	ENSLOCG00000009117	ENSLOCG00000009102	ENSLOCG00000009092	smarcd3b (ENSLOCG00000009069)	CHPF2 (ENSLOCG00000009059)	abcf2b (ENSLOCG00000009041)	ENSLOCG00000009030	faim2a (ENSLOCG00000009020)