Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Glires	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.o #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.o #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Arctic ground squirrel	MODERN SPECIES	46	HOXB6 (ENSUPAG00010006317) #7	HOXB5 (ENSUPAG00010006320) #8	HOXB4 (ENSUPAG00010006325) #9	HOXB3 (ENSUPAG00010006328) #10	HOXB2 (ENSUPAG00010006336) #11	HOXB1 (ENSUPAG00010006340) #12	SKAP1 (ENSUPAG00010006345) #13	SNX11 (ENSUPAG00010006370) #14	CBX1 (ENSUPAG00010006381) #15	NFE2L1 (ENSUPAG00010006396) #16	COPZ2 (ENSUPAG00010006455) #17	CDK5RAP3 (ENSUPAG00010006466) #18	PRR15L (ENSUPAG00010006473) #19	PNPO (ENSUPAG00010006483) #20	SP2 (ENSUPAG00010006507) #21	SP6 (ENSUPAG00010006522) #22	SCRN2 (ENSUPAG00010006526) #23	LRRC46 (ENSUPAG00010006533) #24	MRPL10 (ENSUPAG00010006539) #25	OSBPL7 (ENSUPAG00010006545) #26	TBX21 (ENSUPAG00010006582) #27	TBKBP1 (ENSUPAG00010006591) #28	KPNB1 (ENSUPAG00010006624) #29	NPEPPS (ENSUPAG00010006649) #30	ENSUPAG00010006685 #31	GPR179 (ENSUPAG00010006698) #32	SOCS7 (ENSUPAG00010006716) #33	ARHGAP23 (ENSUPAG00010006763) #34	SRCIN1 (ENSUPAG00010006849) #35	MLLT6 (ENSUPAG00010006969) #36	CISD3 (ENSUPAG00010007056) #37
Squirrel	MODERN SPECIES	90	HOXB6 (ENSSTOG00000020303) #7	HOXB5 (ENSSTOG00000009740) #8	HOXB4 (ENSSTOG00000009734) #9	HOXB3 (ENSSTOG00000025093) #10	HOXB2 (ENSSTOG00000023586) #11	HOXB1 (ENSSTOG00000028630) #12	SKAP1 (ENSSTOG00000013692) #13	SNX11 (ENSSTOG00000013684) #14	CBX1 (ENSSTOG00000023986) #15	NFE2L1 (ENSSTOG00000013664) #16	ENSSTOG00000027550 #17	CDK5RAP3 (ENSSTOG00000006244) #18	PRR15L (ENSSTOG00000006235) #19	PNPO (ENSSTOG00000006221) #20	SP2 (ENSSTOG00000015926) #21	SP6 (ENSSTOG00000001607) #22	SCRN2 (ENSSTOG00000027108) #23	LRRC46 (ENSSTOG00000002068) #24	MRPL10 (ENSSTOG00000024617) #25	OSBPL7 (ENSSTOG00000001636) #26	TBX21 (ENSSTOG00000001626) #27	TBKBP1 (ENSSTOG00000023713) #28	KPNB1 (ENSSTOG00000007896) #29	NPEPPS (ENSSTOG00000004901) #30	ENSSTOG00000000304 #31	GPR179 (ENSSTOG00000024299) #32	SOCS7 (ENSSTOG00000000068) #33	ARHGAP23 (ENSSTOG00000029240) #34	SRCIN1 (ENSSTOG00000028994) #35	EPOP (ENSSTOG00000022964)	MLLT6 (ENSSTOG00000014229) #36
Alpin marmot	MODERN SPECIES	126													PRR15L (ENSMMMG00000020424) #19	PNPO (ENSMMMG00000020407) #20	SP2 (ENSMMMG00000020394) #21	SP6 (ENSMMMG00000020386) #22	SCRN2 (ENSMMMG00000020372) #23	LRRC46 (ENSMMMG00000020356) #24	MRPL10 (ENSMMMG00000020352) #25	OSBPL7 (ENSMMMG00000020336) #26	ENSMMMG00000020333	TBX21 (ENSMMMG00000020329) #27	ENSMMMG00000020322 #28	KPNB1 (ENSMMMG00000020318) #29	NPEPPS (ENSMMMG00000020297) #30	ENSMMMG00000020288 #31	GPR179 (ENSMMMG00000020262) #32	SOCS7 (ENSMMMG00000020236) #33	ARHGAP23 (ENSMMMG00000020178) #34	ENSMMMG00000020172	SRCIN1 (ENSMMMG00000020155) #35
Eurasian red squirrel	MODERN SPECIES	12	HOXB6 (ENSSVLG00005019586) #7	HOXB5 (ENSSVLG00005019546) #8	HOXB4 (ENSSVLG00005019455) #9	HOXB3 (ENSSVLG00005019421) #10	HOXB2 (ENSSVLG00005019378) #11	HOXB1 (ENSSVLG00005019304) #12	SKAP1 (ENSSVLG00005019232) #13	SNX11 (ENSSVLG00005019122) #14	CBX1 (ENSSVLG00005019034) #15	NFE2L1 (ENSSVLG00005018798) #16	COPZ2 (ENSSVLG00005018641) #17	CDK5RAP3 (ENSSVLG00005018459) #18	PRR15L (ENSSVLG00005018399) #19	PNPO (ENSSVLG00005018295) #20	ENSSVLG00005018218 #21	SP6 (ENSSVLG00005018194) #22	SCRN2 (ENSSVLG00005018077) #23	LRRC46 (ENSSVLG00005018036) #24	MRPL10 (ENSSVLG00005017985) #25	OSBPL7 (ENSSVLG00005017757) #26	TBX21 (ENSSVLG00005017653) #27	TBKBP1 (ENSSVLG00005017602) #28	KPNB1 (ENSSVLG00005017557) #29	NPEPPS (ENSSVLG00005017198) #30	MRPL45 (ENSSVLG00005017084) #31	ENSSVLG00005017021	GPR179 (ENSSVLG00005016761) #32	SOCS7 (ENSSVLG00005016676) #33	ARHGAP23 (ENSSVLG00005016593) #34	SRCIN1 (ENSSVLG00005016103) #35	ENSSVLG00005016032
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Guinea pig	MODERN SPECIES	53	HOXB6 (ENSCPOG00000040707) #7	HOXB5 (ENSCPOG00000030746) #8	ENSCPOG00000010105	ENSCPOG00000010107 #10	HOXB2 (ENSCPOG00000035468) #11	HOXB1 (ENSCPOG00000022183) #12	SKAP1 (ENSCPOG00000022118) #13	SNX11 (ENSCPOG00000020234) #14	CBX1 (ENSCPOG00000034435) #15	NFE2L1 (ENSCPOG00000030805) #16	COPZ2 (ENSCPOG00000019500) #17	CDK5RAP3 (ENSCPOG00000007275) #18	PRR15L (ENSCPOG00000035567) #19	PNPO (ENSCPOG00000003187) #20	SP2 (ENSCPOG00000014943) #21	SP6 (ENSCPOG00000007638) #22	SCRN2 (ENSCPOG00000006929) #23	LRRC46 (ENSCPOG00000006925) #24	MRPL10 (ENSCPOG00000037104) #25	OSBPL7 (ENSCPOG00000006914) #26	TBX21 (ENSCPOG00000026273) #27	TBKBP1 (ENSCPOG00000036345) #28	KPNB1 (ENSCPOG00000006566) #29	NPEPPS (ENSCPOG00000006559) #30	MRPL45 (ENSCPOG00000001574) #31	GPR179 (ENSCPOG00000027503) #32	SOCS7 (ENSCPOG00000011473) #33	ARHGAP23 (ENSCPOG00000025821) #34	SRCIN1 (ENSCPOG00000022478) #35	EPOP (ENSCPOG00000026798)	MLLT6 (ENSCPOG00000006561) #36
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000158572 #36	ENSGT00390000004574 #37
Degu	MODERN SPECIES	97	HOXB6 (ENSODEG00000016988) #7	HOXB5 (ENSODEG00000017253) #8	HOXB4 (ENSODEG00000017038) #9	HOXB3 (ENSODEG00000017116) #10	HOXB2 (ENSODEG00000017153) #11	HOXB1 (ENSODEG00000017050) #12	SKAP1 (ENSODEG00000017533) #13	SNX11 (ENSODEG00000017458) #14	CBX1 (ENSODEG00000017272) #15	NFE2L1 (ENSODEG00000017348) #16	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #17	ENSODEG00000017229 #18	PNPO (ENSODEG00000017424) #20	SP2 (ENSODEG00000017126) #21	SP6 (ENSODEG00000017625) #22	SCRN2 (ENSODEG00000017395) #23	LRRC46 (ENSODEG00000017367) #24	MRPL10 (ENSODEG00000017536) #25	OSBPL7 (ENSODEG00000017364) #26	TBX21 (ENSODEG00000017610) #27	ENSODEG00000017455 #28	KPNB1 (ENSODEG00000017287) #29	NPEPPS (ENSODEG00000017337) #30	SOCS7 (ENSODEG00000017559) #33	MRPL45 (ENSODEG00000017631) #31	GPR179 (ENSODEG00000017327) #32	ARHGAP23 (ENSODEG00000017612) #34	SRCIN1 (ENSODEG00000017506) #35	MLLT6 (ENSODEG00000017604) #36	CISD3 (ENSODEG00000017593) #37
Long-tailed chinchilla	MODERN SPECIES	158	HOXB6 (ENSCLAG00000015524) #7	HOXB5 (ENSCLAG00000014374) #8	HOXB4 (ENSCLAG00000014725) #9	HOXB3 (ENSCLAG00000015322) #10	HOXB2 (ENSCLAG00000015271) #11	HOXB1 (ENSCLAG00000013047) #12	SKAP1 (ENSCLAG00000015423) #13	SNX11 (ENSCLAG00000015837) #14	CBX1 (ENSCLAG00000013587) #15	NFE2L1 (ENSCLAG00000014836) #16	COPZ2 (ENSCLAG00000013544) #17	CDK5RAP3 (ENSCLAG00000012292) #18	PRR15L (ENSCLAG00000017903) #19	PNPO (ENSCLAG00000013871) #20	SP2 (ENSCLAG00000014115) #21	SP6 (ENSCLAG00000016276) #22	LRRC46 (ENSCLAG00000016713) #24	SCRN2 (ENSCLAG00000013965) #23	MRPL10 (ENSCLAG00000015400) #25	OSBPL7 (ENSCLAG00000014839) #26	TBX21 (ENSCLAG00000015235) #27	ENSCLAG00000015338 #28	KPNB1 (ENSCLAG00000017091) #29	NPEPPS (ENSCLAG00000016661) #30	MRPL45 (ENSCLAG00000015324) #31	GPR179 (ENSCLAG00000014803) #32	SOCS7 (ENSCLAG00000015232) #33	ARHGAP23 (ENSCLAG00000014290) #34	SRCIN1 (ENSCLAG00000015589) #35	MLLT6 (ENSCLAG00000013781) #36	CISD3 (ENSCLAG00000014350) #37
Naked mole-rat female	MODERN SPECIES	12	HOXB6 (ENSHGLG00000012400) #7	HOXB5 (ENSHGLG00000039265) #8	HOXB4 (ENSHGLG00000034075) #9	HOXB3 (ENSHGLG00000010686) #10	HOXB2 (ENSHGLG00000010090) #11	HOXB1 (ENSHGLG00000009781) #12	SKAP1 (ENSHGLG00000014563) #13	SNX11 (ENSHGLG00000016837) #14	CBX1 (ENSHGLG00000013574) #15	NFE2L1 (ENSHGLG00000012592) #16	COPZ2 (ENSHGLG00000018543) #17	CDK5RAP3 (ENSHGLG00000019464) #18	PRR15L (ENSHGLG00000014696) #19	PNPO (ENSHGLG00000013159) #20	SP2 (ENSHGLG00000009902) #21	SP6 (ENSHGLG00000021113) #22	SCRN2 (ENSHGLG00000041375) #23	LRRC46 (ENSHGLG00000035931) #24	MRPL10 (ENSHGLG00000048399) #25	OSBPL7 (ENSHGLG00000012525) #26	TBX21 (ENSHGLG00000012216) #27	TBKBP1 (ENSHGLG00000049817) #28	KPNB1 (ENSHGLG00000014138) #29	ENSHGLG00000012466 #30	ENSHGLG00000010863 #31	ENSHGLG00000050482	ENSHGLG00000041148 #32	SOCS7 (ENSHGLG00000035093) #33	ARHGAP23 (ENSHGLG00000012944) #34	SRCIN1 (ENSHGLG00000010912) #35	ENSHGLG00000021180
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Muroidea	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.a.a ##15	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.a.b ##15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Golden Hamster	MODERN SPECIES	674	Hoxb7 (ENSMAUG00000021297)	Hoxb6 (ENSMAUG00000021423) #7	Hoxb5 (ENSMAUG00000021419) #8	Hoxb4 (ENSMAUG00000009367) #9	Hoxb3 (ENSMAUG00000011251) #10	Hoxb2 (ENSMAUG00000021979) #11	Hoxb1 (ENSMAUG00000013237) #12	Skap1 (ENSMAUG00000022191) #13	Snx11 (ENSMAUG00000021528) #14	ENSMAUG00000003463 ##15	Nfe2l1 (ENSMAUG00000020456) #16	Copz2 (ENSMAUG00000010560) #17	Cdk5rap3 (ENSMAUG00000007991) #18	Pnpo (ENSMAUG00000021706) #20	Sp2 (ENSMAUG00000019269) #21	Sp6 (ENSMAUG00000009667) #22	Scrn2 (ENSMAUG00000010014) #23	Lrrc46 (ENSMAUG00000019416) #24	Mrpl10 (ENSMAUG00000000820) #25	Osbpl7 (ENSMAUG00000013876) #26	Tbx21 (ENSMAUG00000017507) #27	Tbkbp1 (ENSMAUG00000018604) #28	Kpnb1 (ENSMAUG00000006211) #29	Npepps (ENSMAUG00000017383) #30	Mrpl45 (ENSMAUG00000021636) #31	ENSMAUG00000015632 #32	Socs7 (ENSMAUG00000015461) #33	Arhgap23 (ENSMAUG00000018856) #34	Srcin1 (ENSMAUG00000021175) #35	Epop (ENSMAUG00000015662)	ENSMAUG00000019155
Chinese hamster chok1gshd	MODERN SPECIES	33	Hoxb5 (ENSCGRG00001016167) #8	Hoxb4 (ENSCGRG00001022431) #9	Hoxb3 (ENSCGRG00001016667) #10	Hoxb2 (ENSCGRG00001017587) #11	Hoxb1 (ENSCGRG00001024619) #12	ENSCGRG00001023355 #13	ENSCGRG00001020759 #13	Snx11 (ENSCGRG00001022221) #14	Cbx1 (ENSCGRG00001014799) ##15	Nfe2l1 (ENSCGRG00001015287) #16	Copz2 (ENSCGRG00001014767) #17	Cdk5rap3 (ENSCGRG00001006966) #18	Prr15l (ENSCGRG00001008926) #19	Pnpo (ENSCGRG00001018189) #20	Sp2 (ENSCGRG00001010976) #21	Sp6 (ENSCGRG00001002797) #22	Scrn2 (ENSCGRG00001022143) #23	Lrrc46 (ENSCGRG00001019758) #24	Mrpl10 (ENSCGRG00001024199) #25	Osbpl7 (ENSCGRG00001013737) #26	Tbx21 (ENSCGRG00001008276) #27	Tbkbp1 (ENSCGRG00001018526) #28	Kpnb1 (ENSCGRG00001016042) #29	Npepps (ENSCGRG00001005930) #30	Mrpl45 (ENSCGRG00001000066) #31	Gpr179 (ENSCGRG00001014708) #32	Socs7 (ENSCGRG00001021949) #33	Arhgap23 (ENSCGRG00001018199) #34	Srcin1 (ENSCGRG00001017021) #35	ENSCGRG00001002748	Epop (ENSCGRG00001011711)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Northern American deer mouse	MODERN SPECIES	21	Hoxb4 (ENSPEMG00000029805) #9	Hoxb3 (ENSPEMG00000028692) #10	Hoxb2 (ENSPEMG00000029510) #11	Hoxb1 (ENSPEMG00000023977) #12	Skap1 (ENSPEMG00000000585) #13	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #14	Cbx1 (ENSPEMG00000020976) ##15	Nfe2l1 (ENSPEMG00000010512) #16	Copz2 (ENSPEMG00000011137) #17	Cdk5rap3 (ENSPEMG00000020712) #18	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) #19	Pnpo (ENSPEMG00000025094) #20	Sp2 (ENSPEMG00000017112) #21	Sp6 (ENSPEMG00000001231) #22	Scrn2 (ENSPEMG00000020381) #23	Lrrc46 (ENSPEMG00000020507) #24	Mrpl10 (ENSPEMG00000014613) #25	Osbpl7 (ENSPEMG00000001423) #26	Tbx21 (ENSPEMG00000010056) #27	Tbkbp1 (ENSPEMG00000027762) #28	Kpnb1 (ENSPEMG00000017783) #29	Npepps (ENSPEMG00000012220) #30	Mrpl45 (ENSPEMG00000005654) #31	ENSPEMG00000027307 #32	Socs7 (ENSPEMG00000000521) #33	Arhgap23 (ENSPEMG00000004296) #34	Srcin1 (ENSPEMG00000014663) #35	Epop (ENSPEMG00000026437)	Mllt6 (ENSPEMG00000015310) #36
Prairie vole	MODERN SPECIES	114	Hoxb6 (ENSMOCG00000020355) #7	Hoxb5 (ENSMOCG00000014523) #8	Hoxb4 (ENSMOCG00000022964) #9	Hoxb3 (ENSMOCG00000020739) #10	Hoxb2 (ENSMOCG00000014846) #11	Hoxb1 (ENSMOCG00000002452) #12	Skap1 (ENSMOCG00000018431) #13	Snx11 (ENSMOCG00000019303) #14	Cbx1 (ENSMOCG00000001520) #15	Nfe2l1 (ENSMOCG00000016002) #16	Copz2 (ENSMOCG00000022427) #17	Cdk5rap3 (ENSMOCG00000019534) #18	Prr15l (ENSMOCG00000006695) #19	Pnpo (ENSMOCG00000011655) #20	Sp2 (ENSMOCG00000020935) #21	Sp6 (ENSMOCG00000007065) #22	Scrn2 (ENSMOCG00000019511) #23	Lrrc46 (ENSMOCG00000016707) #24	Mrpl10 (ENSMOCG00000019451) #25	Osbpl7 (ENSMOCG00000021054) #26	Tbx21 (ENSMOCG00000004097) #27	Tbkbp1 (ENSMOCG00000017020) #28	Kpnb1 (ENSMOCG00000003683) #29	Npepps (ENSMOCG00000011600) #30	Mrpl45 (ENSMOCG00000002139) #31	ENSMOCG00000022822 #32	Socs7 (ENSMOCG00000015144) #33	Arhgap23 (ENSMOCG00000005846) #34	Srcin1 (ENSMOCG00000017212) #35	Epop (ENSMOCG00000020613)	Mllt6 (ENSMOCG00000002332) #36
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a	ENSGT00940000158572 #36
Mus	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
Mouse	MODERN SPECIES	2	Hoxb6 (ENSMUSG00000000690) #7	Hoxb5 (ENSMUSG00000038700) #8	Hoxb4 (ENSMUSG00000038692) #9	Hoxb3 (ENSMUSG00000048763) #10	Hoxb2 (ENSMUSG00000075588) #11	Hoxb1 (ENSMUSG00000018973) #12	Skap1 (ENSMUSG00000057058) #13	Snx11 (ENSMUSG00000020876) #14	Cbx1 (ENSMUSG00000018666) #15	Nfe2l1 (ENSMUSG00000038615) #16	Copz2 (ENSMUSG00000018672) #17	Cdk5rap3 (ENSMUSG00000018669) #18	Prr15l (ENSMUSG00000047040) #19	Pnpo (ENSMUSG00000018659) #20	Sp2 (ENSMUSG00000018678) #21	Sp6 (ENSMUSG00000038560) #22	Scrn2 (ENSMUSG00000020877) #23	Lrrc46 (ENSMUSG00000020878) #24	Mrpl10 (ENSMUSG00000001445) #25	Osbpl7 (ENSMUSG00000038534) #26	Tbx21 (ENSMUSG00000001444) #27	Tbkbp1 (ENSMUSG00000038517) #28	Kpnb1 (ENSMUSG00000001440) #29	Npepps (ENSMUSG00000001441) #30	Mrpl45 (ENSMUSG00000018882) #31	Gpr179 (ENSMUSG00000070337) #32	Socs7 (ENSMUSG00000038485) #33	Arhgap23 (ENSMUSG00000049807) #34	Srcin1 (ENSMUSG00000038453) #35	Epop (ENSMUSG00000043439)	Mllt6 (ENSMUSG00000038437) #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b #15	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a
spretus	MODERN SPECIES	2	Hoxb5 (MGP_SPRETEiJ_G0017874) #8	Hoxb4 (MGP_SPRETEiJ_G0017875) #9	Hoxb3 (MGP_SPRETEiJ_G0017876) #10	Hoxb2 (MGP_SPRETEiJ_G0017877) #11	Hoxb1 (MGP_SPRETEiJ_G0017878) #12	MGP_SPRETEiJ_G0017879 #13	Snx11 (MGP_SPRETEiJ_G0017880) #14	Cbx1 (MGP_SPRETEiJ_G0017881) #15	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #16	Copz2 (MGP_SPRETEiJ_G0017884) #17	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #18	Prr15l (MGP_SPRETEiJ_G0017886) #19	Pnpo (MGP_SPRETEiJ_G0017887) #20	Sp2 (MGP_SPRETEiJ_G0017888) #21	Sp6 (MGP_SPRETEiJ_G0017889) #22	Scrn2 (MGP_SPRETEiJ_G0017890) #23	Lrrc46 (MGP_SPRETEiJ_G0017891) #24	Mrpl10 (MGP_SPRETEiJ_G0017892) #25	Osbpl7 (MGP_SPRETEiJ_G0017893) #26	Tbx21 (MGP_SPRETEiJ_G0017894) #27	Tbkbp1 (MGP_SPRETEiJ_G0017895) #28	Kpnb1 (MGP_SPRETEiJ_G0017896) #29	Npepps (MGP_SPRETEiJ_G0017897) #30	Mrpl45 (MGP_SPRETEiJ_G0017898) #31	Gpr179 (MGP_SPRETEiJ_G0017899) #32	Socs7 (MGP_SPRETEiJ_G0017900) #33	Arhgap23 (MGP_SPRETEiJ_G0017901) #34	MGP_SPRETEiJ_G0017902	Srcin1 (MGP_SPRETEiJ_G0017903) #35	Epop (MGP_SPRETEiJ_G0017904)
Steppe mouse	MODERN SPECIES	3291	Hoxb4 (ENSMSIG00000018777) #9	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #10	Hoxb2 (ENSMSIG00000018769) #11	Hoxb1 (ENSMSIG00000018752) #12	Skap1 (ENSMSIG00000018601) #13	Snx11 (ENSMSIG00000018546) #14	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) #15	Nfe2l1 (ENSMSIG00000018374) #16	Copz2 (ENSMSIG00000018337) #17	Cdk5rap3 (ENSMSIG00000018309) #18	ENSMSIG00000018270 #19	ENSMSIG00000018267 #20	Sp2 (ENSMSIG00000018237) #21	Sp6 (ENSMSIG00000018223) #22	Scrn2 (ENSMSIG00000018202) #23	Lrrc46 (ENSMSIG00000018171) #24	Mrpl10 (ENSMSIG00000018160) #25	Osbpl7 (ENSMSIG00000018093) #26	Tbx21 (ENSMSIG00000018069) #27	Tbkbp1 (ENSMSIG00000018040) #28	Kpnb1 (ENSMSIG00000017971) #29	Npepps (ENSMSIG00000017886) #30	Mrpl45 (ENSMSIG00000017873) #31	Gpr179 (ENSMSIG00000017852) #32	Socs7 (ENSMSIG00000017810) #33	ENSMSIG00000017794	Arhgap23 (ENSMSIG00000017701) #34	Srcin1 (ENSMSIG00000017360) #35	Epop (ENSMSIG00000017344)
Ryukyu mouse	MODERN SPECIES	2	Hoxb5 (MGP_CAROLIEiJ_G0017028) #8	Hoxb4 (MGP_CAROLIEiJ_G0017029) #9	Hoxb3 (MGP_CAROLIEiJ_G0017030) #10	Hoxb2 (MGP_CAROLIEiJ_G0017031) #11	Hoxb1 (MGP_CAROLIEiJ_G0017032) #12	Skap1 (MGP_CAROLIEiJ_G0017033) #13	Snx11 (MGP_CAROLIEiJ_G0017034) #14	Cbx1 (MGP_CAROLIEiJ_G0017035) #15	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #16	Copz2 (MGP_CAROLIEiJ_G0017038) #17	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #18	Prr15l (MGP_CAROLIEiJ_G0017040) #19	Pnpo (MGP_CAROLIEiJ_G0017041) #20	Sp2 (MGP_CAROLIEiJ_G0017042) #21	Sp6 (MGP_CAROLIEiJ_G0017043) #22	MGP_CAROLIEiJ_G0017044 #23	Lrrc46 (MGP_CAROLIEiJ_G0017045) #24	Mrpl10 (MGP_CAROLIEiJ_G0017046) #25	Osbpl7 (MGP_CAROLIEiJ_G0017047) #26	Tbx21 (MGP_CAROLIEiJ_G0017048) #27	Tbkbp1 (MGP_CAROLIEiJ_G0017049) #28	Kpnb1 (MGP_CAROLIEiJ_G0017050) #29	Npepps (MGP_CAROLIEiJ_G0017051) #30	Mrpl45 (MGP_CAROLIEiJ_G0017052) #31	Gpr179 (MGP_CAROLIEiJ_G0017053) #32	Socs7 (MGP_CAROLIEiJ_G0017054) #33	Arhgap23 (MGP_CAROLIEiJ_G0017055) #34	MGP_CAROLIEiJ_G0017056	Srcin1 (MGP_CAROLIEiJ_G0017057) #35	Epop (MGP_CAROLIEiJ_G0017058)
Shrew mouse	MODERN SPECIES	5	Hoxb5 (MGP_PahariEiJ_G0018158) #8	Hoxb4 (MGP_PahariEiJ_G0018159) #9	Hoxb3 (MGP_PahariEiJ_G0018160) #10	Hoxb2 (MGP_PahariEiJ_G0018161) #11	Hoxb1 (MGP_PahariEiJ_G0018162) #12	Skap1 (MGP_PahariEiJ_G0018163) #13	Snx11 (MGP_PahariEiJ_G0018164) #14	Cbx1 (MGP_PahariEiJ_G0018165) #15	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #16	Copz2 (MGP_PahariEiJ_G0018168) #17	Cdk5rap3 (MGP_PahariEiJ_G0018169) #18	Prr15l (MGP_PahariEiJ_G0018170) #19	Pnpo (MGP_PahariEiJ_G0018171) #20	Sp2 (MGP_PahariEiJ_G0018172) #21	Sp6 (MGP_PahariEiJ_G0018173) #22	Scrn2 (MGP_PahariEiJ_G0018174) #23	Lrrc46 (MGP_PahariEiJ_G0018175) #24	Mrpl10 (MGP_PahariEiJ_G0018176) #25	Osbpl7 (MGP_PahariEiJ_G0018177) #26	Tbx21 (MGP_PahariEiJ_G0018178) #27	Tbkbp1 (MGP_PahariEiJ_G0018179) #28	Npepps (MGP_PahariEiJ_G0018180) #30	MGP_PahariEiJ_G0018181 #31	Gpr179 (MGP_PahariEiJ_G0018182) #32	Socs7 (MGP_PahariEiJ_G0018183) #33	Arhgap23 (MGP_PahariEiJ_G0018184) #34	MGP_PahariEiJ_G0018185	Srcin1 (MGP_PahariEiJ_G0018186) #35	Epop (MGP_PahariEiJ_G0018187)	Mllt6 (MGP_PahariEiJ_G0018188) #36
Rat	MODERN SPECIES	1	Hoxb6 (ENSRNOG00000007823) #7	Hoxb5 (ENSRNOG00000008010) #8	Hoxb4 (ENSRNOG00000008191) #9	Hoxb3 (ENSRNOG00000008313) #10	Hoxb2 (ENSRNOG00000008365) #11	Hoxb1 (ENSRNOG00000008506) #12	Skap1 (ENSRNOG00000023881) #13	Snx11 (ENSRNOG00000008642) #14	Cbx1 (ENSRNOG00000008689) #15	Nfe2l1 (ENSRNOG00000008830) #16	Copz2 (ENSRNOG00000009225) #17	Cdk5rap3 (ENSRNOG00000048747) #18	Prr15l (ENSRNOG00000049162) #19	Pnpo (ENSRNOG00000046493) #20	Sp2 (ENSRNOG00000010492) #21	Sp6 (ENSRNOG00000023551) #22	Scrn2 (ENSRNOG00000010214) #23	Lrrc46 (ENSRNOG00000009902) #24	Mrpl10 (ENSRNOG00000009567) #25	Osbpl7 (ENSRNOG00000009473) #26	Tbx21 (ENSRNOG00000009427) #27	Tbkbp1 (ENSRNOG00000009370) #28	Kpnb1 (ENSRNOG00000009275) #29	AABR07030425.1 (ENSRNOG00000056057)	Npepps (ENSRNOG00000023095) #30	Mrpl45 (ENSRNOG00000010540) #31	Gpr179 (ENSRNOG00000029245) #32	Socs7 (ENSRNOG00000059008) #33	Arhgap23 (ENSRNOG00000022771) #34	Srcin1 (ENSRNOG00000011475) #35	Epop (ENSRNOG00000048187)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hoxb5 (ENSNGAG00000023238) #8	Hoxb4 (ENSNGAG00000021768) #9	Hoxb3 (ENSNGAG00000020227) #10	Hoxb2 (ENSNGAG00000019089) #11	Hoxb1 (ENSNGAG00000018593) #12	Skap1 (ENSNGAG00000012571) #13	Snx11 (ENSNGAG00000010446) #14	Cbx1 (ENSNGAG00000006760) #15	Nfe2l1 (ENSNGAG00000000736) #16	Copz2 (ENSNGAG00000023713) #17	ENSNGAG00000000747 #18	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432) #19	Pnpo (ENSNGAG00000020016) #20	Sp2 (ENSNGAG00000017612) #21	Sp6 (ENSNGAG00000015868) #22	Scrn2 (ENSNGAG00000023806) #23	Lrrc46 (ENSNGAG00000022557) #24	Mrpl10 (ENSNGAG00000022195) #25	Osbpl7 (ENSNGAG00000019382) #26	Tbx21 (ENSNGAG00000002476) #27	Tbkbp1 (ENSNGAG00000021163) #28	Kpnb1 (ENSNGAG00000017610) #29	Plekhm1 (ENSNGAG00000013194)	Arhgap27 (ENSNGAG00000021239)	Map3k14 (ENSNGAG00000018057)	Efcab15 (ENSNGAG00000014012)	Fmnl1 (ENSNGAG00000018866)	Hexim2 (ENSNGAG00000008154)	Hexim1 (ENSNGAG00000004671)	Acbd4 (ENSNGAG00000003147)
Lesser Egyptian jerboa	MODERN SPECIES	56	Hoxb6 (ENSJJAG00000000997) #7	Hoxb5 (ENSJJAG00000000763) #8	Hoxb4 (ENSJJAG00000002642) #9	Hoxb3 (ENSJJAG00000007804) #10	Hoxb2 (ENSJJAG00000009465) #11	Hoxb1 (ENSJJAG00000001073) #12	Skap1 (ENSJJAG00000003458) #13	ENSJJAG00000005754 #14	ENSJJAG00000007753 ##15	Nfe2l1 (ENSJJAG00000006432) #16	Copz2 (ENSJJAG00000001025) #17	ENSJJAG00000002511 #18	Prr15l (ENSJJAG00000006478) #19	Pnpo (ENSJJAG00000023608) #20	Sp2 (ENSJJAG00000003061) #21	Sp6 (ENSJJAG00000006452) #22	Scrn2 (ENSJJAG00000023635) #23	Lrrc46 (ENSJJAG00000010412) #24	Mrpl10 (ENSJJAG00000004046) #25	Osbpl7 (ENSJJAG00000004477) #26	Tbx21 (ENSJJAG00000000813) #27	ENSJJAG00000010141 #28	Kpnb1 (ENSJJAG00000010909) #29	Npepps (ENSJJAG00000005423) #30	ENSJJAG00000009505	ENSJJAG00000002004 #32	Socs7 (ENSJJAG00000007563) #33	ENSJJAG00000002946 #34	Srcin1 (ENSJJAG00000000573) #35	Epop (ENSJJAG00000023234)	Mllt6 (ENSJJAG00000000902) #36
Kangaroo rat	MODERN SPECIES	326	Hoxb8 (ENSDORG00000007906)	Hoxb7 (ENSDORG00000007905)	Hoxb6 (ENSDORG00000023877) #7	Hoxb5 (ENSDORG00000007900) #8	Hoxb4 (ENSDORG00000007899) #9	Hoxb3 (ENSDORG00000007898) #10	Hoxb2 (ENSDORG00000007897) #11	Hoxb1 (ENSDORG00000007896) #12	Snx11 (ENSDORG00000029078) #14	Cbx1 (ENSDORG00000026399) #15	Nfe2l1 (ENSDORG00000000715) #16	Copz2 (ENSDORG00000013441) #17	Prr15l (ENSDORG00000027427) #19	Pnpo (ENSDORG00000014110) #20	Sp2 (ENSDORG00000014109) #21	Sp6 (ENSDORG00000026201) #22	Scrn2 (ENSDORG00000002361) #23	Osbpl7 (ENSDORG00000002354) #26	Tbx21 (ENSDORG00000013302) #27	Npepps (ENSDORG00000009627) #30	Socs7 (ENSDORG00000028979) #33	ENSDORG00000007713 #34	Srcin1 (ENSDORG00000007714) #35	Mllt6 (ENSDORG00000016578) #36	Cisd3 (ENSDORG00000029439) #37	Pcgf2 (ENSDORG00000016581)	Psmb3 (ENSDORG00000009809)	Pip4k2b (ENSDORG00000009810)	Cwc25 (ENSDORG00000003061)	1700001P01Rik (ENSDORG00000013037)	Rpl23 (ENSDORG00000001372)
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000161529	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000159774 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000158572 #36	ENSGT00390000004574 #37
Rabbit	MODERN SPECIES	10	HOXB8 (ENSOCUG00000029186)	HOXB5 (ENSOCUG00000023093) #8	HOXB6 (ENSOCUG00000011560) #7	HOXB3 (ENSOCUG00000023337) #10	HOXB2 (ENSOCUG00000024951) #11	HOXB1 (ENSOCUG00000001720) #12	SKAP1 (ENSOCUG00000001717) #13	SNX11 (ENSOCUG00000002309) #14	CBX1 (ENSOCUG00000008021) #15	NFE2L1 (ENSOCUG00000022298) #16	COPZ2 (ENSOCUG00000001802) #17	CDK5RAP3 (ENSOCUG00000012325) #18	PRR15L (ENSOCUG00000017489) #19	PNPO (ENSOCUG00000017484) #20	SP2 (ENSOCUG00000027415) #21	SP6 (ENSOCUG00000023482) #22	SCRN2 (ENSOCUG00000009457) #23	LRRC46 (ENSOCUG00000009453) #24	MRPL10 (ENSOCUG00000009452) #25	OSBPL7 (ENSOCUG00000009447) #26	TBX21 (ENSOCUG00000012907) #27	TBKBP1 (ENSOCUG00000014771) #28	KPNB1 (ENSOCUG00000015425) #29	NPEPPS (ENSOCUG00000015748) #30	MRPL45 (ENSOCUG00000015690) #31	GPR179 (ENSOCUG00000015704) #32	SOCS7 (ENSOCUG00000015724) #33	ARHGAP23 (ENSOCUG00000011758) #34	SRCIN1 (ENSOCUG00000005505) #35	MLLT6 (ENSOCUG00000027604) #36	CISD3 (ENSOCUG00000022623) #37
Pika	MODERN SPECIES	633													CDK5RAP3 (ENSOPRG00000004107) #18	PNPO (ENSOPRG00000004080) #20	SP2 (ENSOPRG00000004048) #21	SP6 (ENSOPRG00000004019) #22	SCRN2 (ENSOPRG00000003992) #23	LRRC46 (ENSOPRG00000003963) #24	MRPL10 (ENSOPRG00000003949) #25	OSBPL7 (ENSOPRG00000003904) #26	TBX21 (ENSOPRG00000003888) #27	TBKBP1 (ENSOPRG00000003843) #28	KPNB1 (ENSOPRG00000003795) #29	NPEPPS (ENSOPRG00000003735) #30