Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152 #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000172404	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Theria	ANCESTRAL SPECIES	9	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000172404	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Glires	ANCESTRAL SPECIES	3	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Muroidea	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Mus	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00940000153593.c.b.k #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316 #35	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00940000153593.c.b.k #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316 #35	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00940000153593.c.b.k #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316 #35	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00940000153593.c.b.k #15	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316 #35	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
spretus	MODERN SPECIES	2	Hoxb5 (MGP_SPRETEiJ_G0017874) #7	Hoxb4 (MGP_SPRETEiJ_G0017875) #8	Hoxb3 (MGP_SPRETEiJ_G0017876) #9	Hoxb2 (MGP_SPRETEiJ_G0017877) #10	Hoxb1 (MGP_SPRETEiJ_G0017878) #11	MGP_SPRETEiJ_G0017879 #12	Snx11 (MGP_SPRETEiJ_G0017880) #13	Cbx1 (MGP_SPRETEiJ_G0017881) #14	MGP_SPRETEiJ_G0017882 #15	Nfe2l1 (MGP_SPRETEiJ_G0017883) #16	Copz2 (MGP_SPRETEiJ_G0017884) #17	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #18	Prr15l (MGP_SPRETEiJ_G0017886) #19	Pnpo (MGP_SPRETEiJ_G0017887) #20	Sp2 (MGP_SPRETEiJ_G0017888) #21	Sp6 (MGP_SPRETEiJ_G0017889) #22	Scrn2 (MGP_SPRETEiJ_G0017890) #23	Lrrc46 (MGP_SPRETEiJ_G0017891) #24	Mrpl10 (MGP_SPRETEiJ_G0017892) #25	Osbpl7 (MGP_SPRETEiJ_G0017893) #26	Tbx21 (MGP_SPRETEiJ_G0017894) #27	Tbkbp1 (MGP_SPRETEiJ_G0017895) #28	Kpnb1 (MGP_SPRETEiJ_G0017896) #29	Npepps (MGP_SPRETEiJ_G0017897) #30	Mrpl45 (MGP_SPRETEiJ_G0017898) #31	Gpr179 (MGP_SPRETEiJ_G0017899) #32	Socs7 (MGP_SPRETEiJ_G0017900) #33	Arhgap23 (MGP_SPRETEiJ_G0017901) #34	MGP_SPRETEiJ_G0017902 #35	Srcin1 (MGP_SPRETEiJ_G0017903) #36	Epop (MGP_SPRETEiJ_G0017904) #37
Steppe mouse	MODERN SPECIES	3291	Hoxb4 (ENSMSIG00000018777) #8	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #9	Hoxb2 (ENSMSIG00000018769) #10	Hoxb1 (ENSMSIG00000018752) #11	Skap1 (ENSMSIG00000018601) #12	Snx11 (ENSMSIG00000018546) #13	ENSMSIG00000018520 #15	Cbx1 (ENSMSIG00000018447) #14	Nfe2l1 (ENSMSIG00000018374) #16	Copz2 (ENSMSIG00000018337) #17	Cdk5rap3 (ENSMSIG00000018309) #18	ENSMSIG00000018270 #19	ENSMSIG00000018267 #20	Sp2 (ENSMSIG00000018237) #21	Sp6 (ENSMSIG00000018223) #22	Scrn2 (ENSMSIG00000018202) #23	Lrrc46 (ENSMSIG00000018171) #24	Mrpl10 (ENSMSIG00000018160) #25	Osbpl7 (ENSMSIG00000018093) #26	Tbx21 (ENSMSIG00000018069) #27	Tbkbp1 (ENSMSIG00000018040) #28	Kpnb1 (ENSMSIG00000017971) #29	Npepps (ENSMSIG00000017886) #30	Mrpl45 (ENSMSIG00000017873) #31	Gpr179 (ENSMSIG00000017852) #32	Socs7 (ENSMSIG00000017810) #33	ENSMSIG00000017794 #35	Arhgap23 (ENSMSIG00000017701) #34	Srcin1 (ENSMSIG00000017360) #36	Epop (ENSMSIG00000017344) #37
Mouse	MODERN SPECIES	2	Hoxb6 (ENSMUSG00000000690)	Hoxb5 (ENSMUSG00000038700) #7	Hoxb4 (ENSMUSG00000038692) #8	Hoxb3 (ENSMUSG00000048763) #9	Hoxb2 (ENSMUSG00000075588) #10	Hoxb1 (ENSMUSG00000018973) #11	Skap1 (ENSMUSG00000057058) #12	Snx11 (ENSMUSG00000020876) #13	Cbx1 (ENSMUSG00000018666) #14	Nfe2l1 (ENSMUSG00000038615) #16	Copz2 (ENSMUSG00000018672) #17	Cdk5rap3 (ENSMUSG00000018669) #18	Prr15l (ENSMUSG00000047040) #19	Pnpo (ENSMUSG00000018659) #20	Sp2 (ENSMUSG00000018678) #21	Sp6 (ENSMUSG00000038560) #22	Scrn2 (ENSMUSG00000020877) #23	Lrrc46 (ENSMUSG00000020878) #24	Mrpl10 (ENSMUSG00000001445) #25	Osbpl7 (ENSMUSG00000038534) #26	Tbx21 (ENSMUSG00000001444) #27	Tbkbp1 (ENSMUSG00000038517) #28	Kpnb1 (ENSMUSG00000001440) #29	Npepps (ENSMUSG00000001441) #30	Mrpl45 (ENSMUSG00000018882) #31	Gpr179 (ENSMUSG00000070337) #32	Socs7 (ENSMUSG00000038485) #33	Arhgap23 (ENSMUSG00000049807) #34	Srcin1 (ENSMUSG00000038453) #36	Epop (ENSMUSG00000043439) #37	Mllt6 (ENSMUSG00000038437)
Ryukyu mouse	MODERN SPECIES	2	Hoxb5 (MGP_CAROLIEiJ_G0017028) #7	Hoxb4 (MGP_CAROLIEiJ_G0017029) #8	Hoxb3 (MGP_CAROLIEiJ_G0017030) #9	Hoxb2 (MGP_CAROLIEiJ_G0017031) #10	Hoxb1 (MGP_CAROLIEiJ_G0017032) #11	Skap1 (MGP_CAROLIEiJ_G0017033) #12	Snx11 (MGP_CAROLIEiJ_G0017034) #13	Cbx1 (MGP_CAROLIEiJ_G0017035) #14	MGP_CAROLIEiJ_G0017036 #15	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #16	Copz2 (MGP_CAROLIEiJ_G0017038) #17	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #18	Prr15l (MGP_CAROLIEiJ_G0017040) #19	Pnpo (MGP_CAROLIEiJ_G0017041) #20	Sp2 (MGP_CAROLIEiJ_G0017042) #21	Sp6 (MGP_CAROLIEiJ_G0017043) #22	MGP_CAROLIEiJ_G0017044 #23	Lrrc46 (MGP_CAROLIEiJ_G0017045) #24	Mrpl10 (MGP_CAROLIEiJ_G0017046) #25	Osbpl7 (MGP_CAROLIEiJ_G0017047) #26	Tbx21 (MGP_CAROLIEiJ_G0017048) #27	Tbkbp1 (MGP_CAROLIEiJ_G0017049) #28	Kpnb1 (MGP_CAROLIEiJ_G0017050) #29	Npepps (MGP_CAROLIEiJ_G0017051) #30	Mrpl45 (MGP_CAROLIEiJ_G0017052) #31	Gpr179 (MGP_CAROLIEiJ_G0017053) #32	Socs7 (MGP_CAROLIEiJ_G0017054) #33	Arhgap23 (MGP_CAROLIEiJ_G0017055) #34	MGP_CAROLIEiJ_G0017056 #35	Srcin1 (MGP_CAROLIEiJ_G0017057) #36	Epop (MGP_CAROLIEiJ_G0017058) #37
Shrew mouse	MODERN SPECIES	5	Hoxb5 (MGP_PahariEiJ_G0018158) #7	Hoxb4 (MGP_PahariEiJ_G0018159) #8	Hoxb3 (MGP_PahariEiJ_G0018160) #9	Hoxb2 (MGP_PahariEiJ_G0018161) #10	Hoxb1 (MGP_PahariEiJ_G0018162) #11	Skap1 (MGP_PahariEiJ_G0018163) #12	Snx11 (MGP_PahariEiJ_G0018164) #13	Cbx1 (MGP_PahariEiJ_G0018165) #14	MGP_PahariEiJ_G0018166 #15	Nfe2l1 (MGP_PahariEiJ_G0018167) #16	Copz2 (MGP_PahariEiJ_G0018168) #17	Cdk5rap3 (MGP_PahariEiJ_G0018169) #18	Prr15l (MGP_PahariEiJ_G0018170) #19	Pnpo (MGP_PahariEiJ_G0018171) #20	Sp2 (MGP_PahariEiJ_G0018172) #21	Sp6 (MGP_PahariEiJ_G0018173) #22	Scrn2 (MGP_PahariEiJ_G0018174) #23	Lrrc46 (MGP_PahariEiJ_G0018175) #24	Mrpl10 (MGP_PahariEiJ_G0018176) #25	Osbpl7 (MGP_PahariEiJ_G0018177) #26	Tbx21 (MGP_PahariEiJ_G0018178) #27	Tbkbp1 (MGP_PahariEiJ_G0018179) #28	Npepps (MGP_PahariEiJ_G0018180) #30	MGP_PahariEiJ_G0018181 #31	Gpr179 (MGP_PahariEiJ_G0018182) #32	Socs7 (MGP_PahariEiJ_G0018183) #33	Arhgap23 (MGP_PahariEiJ_G0018184) #34	MGP_PahariEiJ_G0018185 #35	Srcin1 (MGP_PahariEiJ_G0018186) #36	Epop (MGP_PahariEiJ_G0018187) #37	Mllt6 (MGP_PahariEiJ_G0018188)
Rat	MODERN SPECIES	1	Hoxb6 (ENSRNOG00000007823)	Hoxb5 (ENSRNOG00000008010) #7	Hoxb4 (ENSRNOG00000008191) #8	Hoxb3 (ENSRNOG00000008313) #9	Hoxb2 (ENSRNOG00000008365) #10	Hoxb1 (ENSRNOG00000008506) #11	Skap1 (ENSRNOG00000023881) #12	Snx11 (ENSRNOG00000008642) #13	Cbx1 (ENSRNOG00000008689) #14	Nfe2l1 (ENSRNOG00000008830) #16	Copz2 (ENSRNOG00000009225) #17	Cdk5rap3 (ENSRNOG00000048747) #18	Prr15l (ENSRNOG00000049162) #19	Pnpo (ENSRNOG00000046493) #20	Sp2 (ENSRNOG00000010492) #21	Sp6 (ENSRNOG00000023551) #22	Scrn2 (ENSRNOG00000010214) #23	Lrrc46 (ENSRNOG00000009902) #24	Mrpl10 (ENSRNOG00000009567) #25	Osbpl7 (ENSRNOG00000009473) #26	Tbx21 (ENSRNOG00000009427) #27	Tbkbp1 (ENSRNOG00000009370) #28	Kpnb1 (ENSRNOG00000009275) #29	AABR07030425.1 (ENSRNOG00000056057)	Npepps (ENSRNOG00000023095) #30	Mrpl45 (ENSRNOG00000010540) #31	Gpr179 (ENSRNOG00000029245) #32	Socs7 (ENSRNOG00000059008) #33	Arhgap23 (ENSRNOG00000022771) #34	Srcin1 (ENSRNOG00000011475) #36	Epop (ENSRNOG00000048187) #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.a.a ##14	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.a.b ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Golden Hamster	MODERN SPECIES	674	Hoxb7 (ENSMAUG00000021297)	Hoxb6 (ENSMAUG00000021423)	Hoxb5 (ENSMAUG00000021419) #7	Hoxb4 (ENSMAUG00000009367) #8	Hoxb3 (ENSMAUG00000011251) #9	Hoxb2 (ENSMAUG00000021979) #10	Hoxb1 (ENSMAUG00000013237) #11	Skap1 (ENSMAUG00000022191) #12	Snx11 (ENSMAUG00000021528) #13	ENSMAUG00000003463 ##14	Nfe2l1 (ENSMAUG00000020456) #16	Copz2 (ENSMAUG00000010560) #17	Cdk5rap3 (ENSMAUG00000007991) #18	Pnpo (ENSMAUG00000021706) #20	Sp2 (ENSMAUG00000019269) #21	Sp6 (ENSMAUG00000009667) #22	Scrn2 (ENSMAUG00000010014) #23	Lrrc46 (ENSMAUG00000019416) #24	Mrpl10 (ENSMAUG00000000820) #25	Osbpl7 (ENSMAUG00000013876) #26	Tbx21 (ENSMAUG00000017507) #27	Tbkbp1 (ENSMAUG00000018604) #28	Kpnb1 (ENSMAUG00000006211) #29	Npepps (ENSMAUG00000017383) #30	Mrpl45 (ENSMAUG00000021636) #31	ENSMAUG00000015632 #32	Socs7 (ENSMAUG00000015461) #33	Arhgap23 (ENSMAUG00000018856) #34	Srcin1 (ENSMAUG00000021175) #36	Epop (ENSMAUG00000015662) #37	ENSMAUG00000019155
Chinese hamster chok1gshd	MODERN SPECIES	33	Hoxb5 (ENSCGRG00001016167) #7	Hoxb4 (ENSCGRG00001022431) #8	Hoxb3 (ENSCGRG00001016667) #9	Hoxb2 (ENSCGRG00001017587) #10	Hoxb1 (ENSCGRG00001024619) #11	ENSCGRG00001023355 #12	ENSCGRG00001020759 #12	Snx11 (ENSCGRG00001022221) #13	Cbx1 (ENSCGRG00001014799) ##14	Nfe2l1 (ENSCGRG00001015287) #16	Copz2 (ENSCGRG00001014767) #17	Cdk5rap3 (ENSCGRG00001006966) #18	Prr15l (ENSCGRG00001008926) #19	Pnpo (ENSCGRG00001018189) #20	Sp2 (ENSCGRG00001010976) #21	Sp6 (ENSCGRG00001002797) #22	Scrn2 (ENSCGRG00001022143) #23	Lrrc46 (ENSCGRG00001019758) #24	Mrpl10 (ENSCGRG00001024199) #25	Osbpl7 (ENSCGRG00001013737) #26	Tbx21 (ENSCGRG00001008276) #27	Tbkbp1 (ENSCGRG00001018526) #28	Kpnb1 (ENSCGRG00001016042) #29	Npepps (ENSCGRG00001005930) #30	Mrpl45 (ENSCGRG00001000066) #31	Gpr179 (ENSCGRG00001014708) #32	Socs7 (ENSCGRG00001021949) #33	Arhgap23 (ENSCGRG00001018199) #34	Srcin1 (ENSCGRG00001017021) #36	ENSCGRG00001002748	Epop (ENSCGRG00001011711) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Northern American deer mouse	MODERN SPECIES	21	Hoxb4 (ENSPEMG00000029805) #8	Hoxb3 (ENSPEMG00000028692) #9	Hoxb2 (ENSPEMG00000029510) #10	Hoxb1 (ENSPEMG00000023977) #11	Skap1 (ENSPEMG00000000585) #12	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #13	Cbx1 (ENSPEMG00000020976) ##14	Nfe2l1 (ENSPEMG00000010512) #16	Copz2 (ENSPEMG00000011137) #17	Cdk5rap3 (ENSPEMG00000020712) #18	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) #19	Pnpo (ENSPEMG00000025094) #20	Sp2 (ENSPEMG00000017112) #21	Sp6 (ENSPEMG00000001231) #22	Scrn2 (ENSPEMG00000020381) #23	Lrrc46 (ENSPEMG00000020507) #24	Mrpl10 (ENSPEMG00000014613) #25	Osbpl7 (ENSPEMG00000001423) #26	Tbx21 (ENSPEMG00000010056) #27	Tbkbp1 (ENSPEMG00000027762) #28	Kpnb1 (ENSPEMG00000017783) #29	Npepps (ENSPEMG00000012220) #30	Mrpl45 (ENSPEMG00000005654) #31	ENSPEMG00000027307 #32	Socs7 (ENSPEMG00000000521) #33	Arhgap23 (ENSPEMG00000004296) #34	Srcin1 (ENSPEMG00000014663) #36	Epop (ENSPEMG00000026437) #37	Mllt6 (ENSPEMG00000015310)
Prairie vole	MODERN SPECIES	114	Hoxb6 (ENSMOCG00000020355)	Hoxb5 (ENSMOCG00000014523) #7	Hoxb4 (ENSMOCG00000022964) #8	Hoxb3 (ENSMOCG00000020739) #9	Hoxb2 (ENSMOCG00000014846) #10	Hoxb1 (ENSMOCG00000002452) #11	Skap1 (ENSMOCG00000018431) #12	Snx11 (ENSMOCG00000019303) #13	Cbx1 (ENSMOCG00000001520) #14	Nfe2l1 (ENSMOCG00000016002) #16	Copz2 (ENSMOCG00000022427) #17	Cdk5rap3 (ENSMOCG00000019534) #18	Prr15l (ENSMOCG00000006695) #19	Pnpo (ENSMOCG00000011655) #20	Sp2 (ENSMOCG00000020935) #21	Sp6 (ENSMOCG00000007065) #22	Scrn2 (ENSMOCG00000019511) #23	Lrrc46 (ENSMOCG00000016707) #24	Mrpl10 (ENSMOCG00000019451) #25	Osbpl7 (ENSMOCG00000021054) #26	Tbx21 (ENSMOCG00000004097) #27	Tbkbp1 (ENSMOCG00000017020) #28	Kpnb1 (ENSMOCG00000003683) #29	Npepps (ENSMOCG00000011600) #30	Mrpl45 (ENSMOCG00000002139) #31	ENSMOCG00000022822 #32	Socs7 (ENSMOCG00000015144) #33	Arhgap23 (ENSMOCG00000005846) #34	Srcin1 (ENSMOCG00000017212) #36	Epop (ENSMOCG00000020613) #37	Mllt6 (ENSMOCG00000002332)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hoxb5 (ENSNGAG00000023238) #7	Hoxb4 (ENSNGAG00000021768) #8	Hoxb3 (ENSNGAG00000020227) #9	Hoxb2 (ENSNGAG00000019089) #10	Hoxb1 (ENSNGAG00000018593) #11	Skap1 (ENSNGAG00000012571) #12	Snx11 (ENSNGAG00000010446) #13	Cbx1 (ENSNGAG00000006760) #14	Nfe2l1 (ENSNGAG00000000736) #16	Copz2 (ENSNGAG00000023713) #17	ENSNGAG00000000747 #18	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432) #19	Pnpo (ENSNGAG00000020016) #20	Sp2 (ENSNGAG00000017612) #21	Sp6 (ENSNGAG00000015868) #22	Scrn2 (ENSNGAG00000023806) #23	Lrrc46 (ENSNGAG00000022557) #24	Mrpl10 (ENSNGAG00000022195) #25	Osbpl7 (ENSNGAG00000019382) #26	Tbx21 (ENSNGAG00000002476) #27	Tbkbp1 (ENSNGAG00000021163) #28	Kpnb1 (ENSNGAG00000017610) #29	Plekhm1 (ENSNGAG00000013194)	Arhgap27 (ENSNGAG00000021239)	Map3k14 (ENSNGAG00000018057)	Efcab15 (ENSNGAG00000014012)	Fmnl1 (ENSNGAG00000018866)	Hexim2 (ENSNGAG00000008154)	Hexim1 (ENSNGAG00000004671)	Acbd4 (ENSNGAG00000003147)
Lesser Egyptian jerboa	MODERN SPECIES	56	Hoxb6 (ENSJJAG00000000997)	Hoxb5 (ENSJJAG00000000763) #7	Hoxb4 (ENSJJAG00000002642) #8	Hoxb3 (ENSJJAG00000007804) #9	Hoxb2 (ENSJJAG00000009465) #10	Hoxb1 (ENSJJAG00000001073) #11	Skap1 (ENSJJAG00000003458) #12	ENSJJAG00000005754 #13	ENSJJAG00000007753 ##14	Nfe2l1 (ENSJJAG00000006432) #16	Copz2 (ENSJJAG00000001025) #17	ENSJJAG00000002511 #18	Prr15l (ENSJJAG00000006478) #19	Pnpo (ENSJJAG00000023608) #20	Sp2 (ENSJJAG00000003061) #21	Sp6 (ENSJJAG00000006452) #22	Scrn2 (ENSJJAG00000023635) #23	Lrrc46 (ENSJJAG00000010412) #24	Mrpl10 (ENSJJAG00000004046) #25	Osbpl7 (ENSJJAG00000004477) #26	Tbx21 (ENSJJAG00000000813) #27	ENSJJAG00000010141 #28	Kpnb1 (ENSJJAG00000010909) #29	Npepps (ENSJJAG00000005423) #30	ENSJJAG00000009505	ENSJJAG00000002004 #32	Socs7 (ENSJJAG00000007563) #33	ENSJJAG00000002946 #34	Srcin1 (ENSJJAG00000000573) #36	Epop (ENSJJAG00000023234) #37	Mllt6 (ENSJJAG00000000902)
Kangaroo rat	MODERN SPECIES	326	Hoxb8 (ENSDORG00000007906)	Hoxb7 (ENSDORG00000007905)	Hoxb6 (ENSDORG00000023877)	Hoxb5 (ENSDORG00000007900) #7	Hoxb4 (ENSDORG00000007899) #8	Hoxb3 (ENSDORG00000007898) #9	Hoxb2 (ENSDORG00000007897) #10	Hoxb1 (ENSDORG00000007896) #11	Snx11 (ENSDORG00000029078) #13	Cbx1 (ENSDORG00000026399) #14	Nfe2l1 (ENSDORG00000000715) #16	Copz2 (ENSDORG00000013441) #17	Prr15l (ENSDORG00000027427) #19	Pnpo (ENSDORG00000014110) #20	Sp2 (ENSDORG00000014109) #21	Sp6 (ENSDORG00000026201) #22	Scrn2 (ENSDORG00000002361) #23	Osbpl7 (ENSDORG00000002354) #26	Tbx21 (ENSDORG00000013302) #27	Npepps (ENSDORG00000009627) #30	Socs7 (ENSDORG00000028979) #33	ENSDORG00000007713 #34	Srcin1 (ENSDORG00000007714) #36	Mllt6 (ENSDORG00000016578)	Cisd3 (ENSDORG00000029439)	Pcgf2 (ENSDORG00000016581)	Psmb3 (ENSDORG00000009809)	Pip4k2b (ENSDORG00000009810)	Cwc25 (ENSDORG00000003061)	1700001P01Rik (ENSDORG00000013037)	Rpl23 (ENSDORG00000001372)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.o #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.o #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Arctic ground squirrel	MODERN SPECIES	46	HOXB6 (ENSUPAG00010006317)	HOXB5 (ENSUPAG00010006320) #7	HOXB4 (ENSUPAG00010006325) #8	HOXB3 (ENSUPAG00010006328) #9	HOXB2 (ENSUPAG00010006336) #10	HOXB1 (ENSUPAG00010006340) #11	SKAP1 (ENSUPAG00010006345) #12	SNX11 (ENSUPAG00010006370) #13	CBX1 (ENSUPAG00010006381) #14	NFE2L1 (ENSUPAG00010006396) #16	COPZ2 (ENSUPAG00010006455) #17	CDK5RAP3 (ENSUPAG00010006466) #18	PRR15L (ENSUPAG00010006473) #19	PNPO (ENSUPAG00010006483) #20	SP2 (ENSUPAG00010006507) #21	SP6 (ENSUPAG00010006522) #22	SCRN2 (ENSUPAG00010006526) #23	LRRC46 (ENSUPAG00010006533) #24	MRPL10 (ENSUPAG00010006539) #25	OSBPL7 (ENSUPAG00010006545) #26	TBX21 (ENSUPAG00010006582) #27	TBKBP1 (ENSUPAG00010006591) #28	KPNB1 (ENSUPAG00010006624) #29	NPEPPS (ENSUPAG00010006649) #30	ENSUPAG00010006685 #31	GPR179 (ENSUPAG00010006698) #32	SOCS7 (ENSUPAG00010006716) #33	ARHGAP23 (ENSUPAG00010006763) #34	SRCIN1 (ENSUPAG00010006849) #36	MLLT6 (ENSUPAG00010006969)	CISD3 (ENSUPAG00010007056)
Squirrel	MODERN SPECIES	90	HOXB6 (ENSSTOG00000020303)	HOXB5 (ENSSTOG00000009740) #7	HOXB4 (ENSSTOG00000009734) #8	HOXB3 (ENSSTOG00000025093) #9	HOXB2 (ENSSTOG00000023586) #10	HOXB1 (ENSSTOG00000028630) #11	SKAP1 (ENSSTOG00000013692) #12	SNX11 (ENSSTOG00000013684) #13	CBX1 (ENSSTOG00000023986) #14	NFE2L1 (ENSSTOG00000013664) #16	ENSSTOG00000027550 #17	CDK5RAP3 (ENSSTOG00000006244) #18	PRR15L (ENSSTOG00000006235) #19	PNPO (ENSSTOG00000006221) #20	SP2 (ENSSTOG00000015926) #21	SP6 (ENSSTOG00000001607) #22	SCRN2 (ENSSTOG00000027108) #23	LRRC46 (ENSSTOG00000002068) #24	MRPL10 (ENSSTOG00000024617) #25	OSBPL7 (ENSSTOG00000001636) #26	TBX21 (ENSSTOG00000001626) #27	TBKBP1 (ENSSTOG00000023713) #28	KPNB1 (ENSSTOG00000007896) #29	NPEPPS (ENSSTOG00000004901) #30	ENSSTOG00000000304 #31	GPR179 (ENSSTOG00000024299) #32	SOCS7 (ENSSTOG00000000068) #33	ARHGAP23 (ENSSTOG00000029240) #34	SRCIN1 (ENSSTOG00000028994) #36	EPOP (ENSSTOG00000022964) #37	MLLT6 (ENSSTOG00000014229)
Alpin marmot	MODERN SPECIES	126													PRR15L (ENSMMMG00000020424) #19	PNPO (ENSMMMG00000020407) #20	SP2 (ENSMMMG00000020394) #21	SP6 (ENSMMMG00000020386) #22	SCRN2 (ENSMMMG00000020372) #23	LRRC46 (ENSMMMG00000020356) #24	MRPL10 (ENSMMMG00000020352) #25	OSBPL7 (ENSMMMG00000020336) #26	ENSMMMG00000020333	TBX21 (ENSMMMG00000020329) #27	ENSMMMG00000020322 #28	KPNB1 (ENSMMMG00000020318) #29	NPEPPS (ENSMMMG00000020297) #30	ENSMMMG00000020288 #31	GPR179 (ENSMMMG00000020262) #32	SOCS7 (ENSMMMG00000020236) #33	ARHGAP23 (ENSMMMG00000020178) #34	ENSMMMG00000020172	SRCIN1 (ENSMMMG00000020155) #36
Eurasian red squirrel	MODERN SPECIES	12	HOXB6 (ENSSVLG00005019586)	HOXB5 (ENSSVLG00005019546) #7	HOXB4 (ENSSVLG00005019455) #8	HOXB3 (ENSSVLG00005019421) #9	HOXB2 (ENSSVLG00005019378) #10	HOXB1 (ENSSVLG00005019304) #11	SKAP1 (ENSSVLG00005019232) #12	SNX11 (ENSSVLG00005019122) #13	CBX1 (ENSSVLG00005019034) #14	NFE2L1 (ENSSVLG00005018798) #16	COPZ2 (ENSSVLG00005018641) #17	CDK5RAP3 (ENSSVLG00005018459) #18	PRR15L (ENSSVLG00005018399) #19	PNPO (ENSSVLG00005018295) #20	ENSSVLG00005018218 #21	SP6 (ENSSVLG00005018194) #22	SCRN2 (ENSSVLG00005018077) #23	LRRC46 (ENSSVLG00005018036) #24	MRPL10 (ENSSVLG00005017985) #25	OSBPL7 (ENSSVLG00005017757) #26	TBX21 (ENSSVLG00005017653) #27	TBKBP1 (ENSSVLG00005017602) #28	KPNB1 (ENSSVLG00005017557) #29	NPEPPS (ENSSVLG00005017198) #30	MRPL45 (ENSSVLG00005017084) #31	ENSSVLG00005017021	GPR179 (ENSSVLG00005016761) #32	SOCS7 (ENSSVLG00005016676) #33	ARHGAP23 (ENSSVLG00005016593) #34	SRCIN1 (ENSSVLG00005016103) #36	ENSSVLG00005016032
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Guinea pig	MODERN SPECIES	53	HOXB6 (ENSCPOG00000040707)	HOXB5 (ENSCPOG00000030746) #7	ENSCPOG00000010105	ENSCPOG00000010107 #9	HOXB2 (ENSCPOG00000035468) #10	HOXB1 (ENSCPOG00000022183) #11	SKAP1 (ENSCPOG00000022118) #12	SNX11 (ENSCPOG00000020234) #13	CBX1 (ENSCPOG00000034435) #14	NFE2L1 (ENSCPOG00000030805) #16	COPZ2 (ENSCPOG00000019500) #17	CDK5RAP3 (ENSCPOG00000007275) #18	PRR15L (ENSCPOG00000035567) #19	PNPO (ENSCPOG00000003187) #20	SP2 (ENSCPOG00000014943) #21	SP6 (ENSCPOG00000007638) #22	SCRN2 (ENSCPOG00000006929) #23	LRRC46 (ENSCPOG00000006925) #24	MRPL10 (ENSCPOG00000037104) #25	OSBPL7 (ENSCPOG00000006914) #26	TBX21 (ENSCPOG00000026273) #27	TBKBP1 (ENSCPOG00000036345) #28	KPNB1 (ENSCPOG00000006566) #29	NPEPPS (ENSCPOG00000006559) #30	MRPL45 (ENSCPOG00000001574) #31	GPR179 (ENSCPOG00000027503) #32	SOCS7 (ENSCPOG00000011473) #33	ARHGAP23 (ENSCPOG00000025821) #34	SRCIN1 (ENSCPOG00000022478) #36	EPOP (ENSCPOG00000026798) #37	MLLT6 (ENSCPOG00000006561)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000158572	ENSGT00390000004574
Degu	MODERN SPECIES	97	HOXB6 (ENSODEG00000016988)	HOXB5 (ENSODEG00000017253) #7	HOXB4 (ENSODEG00000017038) #8	HOXB3 (ENSODEG00000017116) #9	HOXB2 (ENSODEG00000017153) #10	HOXB1 (ENSODEG00000017050) #11	SKAP1 (ENSODEG00000017533) #12	SNX11 (ENSODEG00000017458) #13	CBX1 (ENSODEG00000017272) #14	NFE2L1 (ENSODEG00000017348) #16	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #17	ENSODEG00000017229 #18	PNPO (ENSODEG00000017424) #20	SP2 (ENSODEG00000017126) #21	SP6 (ENSODEG00000017625) #22	SCRN2 (ENSODEG00000017395) #23	LRRC46 (ENSODEG00000017367) #24	MRPL10 (ENSODEG00000017536) #25	OSBPL7 (ENSODEG00000017364) #26	TBX21 (ENSODEG00000017610) #27	ENSODEG00000017455 #28	KPNB1 (ENSODEG00000017287) #29	NPEPPS (ENSODEG00000017337) #30	SOCS7 (ENSODEG00000017559) #33	MRPL45 (ENSODEG00000017631) #31	GPR179 (ENSODEG00000017327) #32	ARHGAP23 (ENSODEG00000017612) #34	SRCIN1 (ENSODEG00000017506) #36	MLLT6 (ENSODEG00000017604)	CISD3 (ENSODEG00000017593)
Long-tailed chinchilla	MODERN SPECIES	158	HOXB6 (ENSCLAG00000015524)	HOXB5 (ENSCLAG00000014374) #7	HOXB4 (ENSCLAG00000014725) #8	HOXB3 (ENSCLAG00000015322) #9	HOXB2 (ENSCLAG00000015271) #10	HOXB1 (ENSCLAG00000013047) #11	SKAP1 (ENSCLAG00000015423) #12	SNX11 (ENSCLAG00000015837) #13	CBX1 (ENSCLAG00000013587) #14	NFE2L1 (ENSCLAG00000014836) #16	COPZ2 (ENSCLAG00000013544) #17	CDK5RAP3 (ENSCLAG00000012292) #18	PRR15L (ENSCLAG00000017903) #19	PNPO (ENSCLAG00000013871) #20	SP2 (ENSCLAG00000014115) #21	SP6 (ENSCLAG00000016276) #22	LRRC46 (ENSCLAG00000016713) #24	SCRN2 (ENSCLAG00000013965) #23	MRPL10 (ENSCLAG00000015400) #25	OSBPL7 (ENSCLAG00000014839) #26	TBX21 (ENSCLAG00000015235) #27	ENSCLAG00000015338 #28	KPNB1 (ENSCLAG00000017091) #29	NPEPPS (ENSCLAG00000016661) #30	MRPL45 (ENSCLAG00000015324) #31	GPR179 (ENSCLAG00000014803) #32	SOCS7 (ENSCLAG00000015232) #33	ARHGAP23 (ENSCLAG00000014290) #34	SRCIN1 (ENSCLAG00000015589) #36	MLLT6 (ENSCLAG00000013781)	CISD3 (ENSCLAG00000014350)
Naked mole-rat female	MODERN SPECIES	12	HOXB6 (ENSHGLG00000012400)	HOXB5 (ENSHGLG00000039265) #7	HOXB4 (ENSHGLG00000034075) #8	HOXB3 (ENSHGLG00000010686) #9	HOXB2 (ENSHGLG00000010090) #10	HOXB1 (ENSHGLG00000009781) #11	SKAP1 (ENSHGLG00000014563) #12	SNX11 (ENSHGLG00000016837) #13	CBX1 (ENSHGLG00000013574) #14	NFE2L1 (ENSHGLG00000012592) #16	COPZ2 (ENSHGLG00000018543) #17	CDK5RAP3 (ENSHGLG00000019464) #18	PRR15L (ENSHGLG00000014696) #19	PNPO (ENSHGLG00000013159) #20	SP2 (ENSHGLG00000009902) #21	SP6 (ENSHGLG00000021113) #22	SCRN2 (ENSHGLG00000041375) #23	LRRC46 (ENSHGLG00000035931) #24	MRPL10 (ENSHGLG00000048399) #25	OSBPL7 (ENSHGLG00000012525) #26	TBX21 (ENSHGLG00000012216) #27	TBKBP1 (ENSHGLG00000049817) #28	KPNB1 (ENSHGLG00000014138) #29	ENSHGLG00000012466 #30	ENSHGLG00000010863 #31	ENSHGLG00000050482	ENSHGLG00000041148 #32	SOCS7 (ENSHGLG00000035093) #33	ARHGAP23 (ENSHGLG00000012944) #34	SRCIN1 (ENSHGLG00000010912) #36	ENSHGLG00000021180
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000161529	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.dc #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000158572	ENSGT00390000004574
Rabbit	MODERN SPECIES	10	HOXB8 (ENSOCUG00000029186)	HOXB5 (ENSOCUG00000023093) #7	HOXB6 (ENSOCUG00000011560)	HOXB3 (ENSOCUG00000023337) #9	HOXB2 (ENSOCUG00000024951) #10	HOXB1 (ENSOCUG00000001720) #11	SKAP1 (ENSOCUG00000001717) #12	SNX11 (ENSOCUG00000002309) #13	CBX1 (ENSOCUG00000008021) #14	NFE2L1 (ENSOCUG00000022298) #16	COPZ2 (ENSOCUG00000001802) #17	CDK5RAP3 (ENSOCUG00000012325) #18	PRR15L (ENSOCUG00000017489) #19	PNPO (ENSOCUG00000017484) #20	SP2 (ENSOCUG00000027415) #21	SP6 (ENSOCUG00000023482) #22	SCRN2 (ENSOCUG00000009457) #23	LRRC46 (ENSOCUG00000009453) #24	MRPL10 (ENSOCUG00000009452) #25	OSBPL7 (ENSOCUG00000009447) #26	TBX21 (ENSOCUG00000012907) #27	TBKBP1 (ENSOCUG00000014771) #28	KPNB1 (ENSOCUG00000015425) #29	NPEPPS (ENSOCUG00000015748) #30	MRPL45 (ENSOCUG00000015690) #31	GPR179 (ENSOCUG00000015704) #32	SOCS7 (ENSOCUG00000015724) #33	ARHGAP23 (ENSOCUG00000011758) #34	SRCIN1 (ENSOCUG00000005505) #36	MLLT6 (ENSOCUG00000027604)	CISD3 (ENSOCUG00000022623)
Pika	MODERN SPECIES	633													CDK5RAP3 (ENSOPRG00000004107) #18	PNPO (ENSOPRG00000004080) #20	SP2 (ENSOPRG00000004048) #21	SP6 (ENSOPRG00000004019) #22	SCRN2 (ENSOPRG00000003992) #23	LRRC46 (ENSOPRG00000003963) #24	MRPL10 (ENSOPRG00000003949) #25	OSBPL7 (ENSOPRG00000003904) #26	TBX21 (ENSOPRG00000003888) #27	TBKBP1 (ENSOPRG00000003843) #28	KPNB1 (ENSOPRG00000003795) #29	NPEPPS (ENSOPRG00000003735) #30
Primates	ANCESTRAL SPECIES	3	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713.h.b #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.i #30	ENSGT00940000155246.j.b.b #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713.h.a #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.i #30	ENSGT00940000155246.j.b.b #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713.h.a.a.b #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.j.b.a #30	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00940000155111.h	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a
Gorilla	MODERN SPECIES	18	HOXB7 (ENSGGOG00000002637)	HOXB6 (ENSGGOG00000002634)	HOXB5 (ENSGGOG00000023582) #7	HOXB3 (ENSGGOG00000012838) #9	HOXB2 (ENSGGOG00000009910) #10	HOXB1 (ENSGGOG00000009904) #11	SKAP1 (ENSGGOG00000012624) #12	ENSGGOG00000025896	CBX1 (ENSGGOG00000024063) #14	NFE2L1 (ENSGGOG00000002268) #16	COPZ2 (ENSGGOG00000002264) #17	ENSGGOG00000022994 #18	PRR15L (ENSGGOG00000037816) #19	PNPO (ENSGGOG00000003786) #20	SP2 (ENSGGOG00000005330) #21	SP6 (ENSGGOG00000036261) #22	SCRN2 (ENSGGOG00000004547) #23	LRRC46 (ENSGGOG00000012667) #24	MRPL10 (ENSGGOG00000015353) #25	OSBPL7 (ENSGGOG00000015344) #26	TBX21 (ENSGGOG00000002208) #27	TBKBP1 (ENSGGOG00000002206) #28	KPNB1 (ENSGGOG00000008089) #29	ENSGGOG00000022991 #30	EFCAB13 (ENSGGOG00000022715)	ENSGGOG00000023488	ITGB3 (ENSGGOG00000007757)	MYL4 (ENSGGOG00000009722)	CDC27 (ENSGGOG00000014729)	ENSGGOG00000040439	RPRML (ENSGGOG00000000099)
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713.h.a.a.b #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.j.b.a #30	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a
Pan	ANCESTRAL SPECIES	3	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713.h.a.a.b #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.j.b.a #30	ENSGT00940000153464.A.b.b	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a
Chimpanzee	MODERN SPECIES	8	HOXB6 (ENSPTRG00000009356)	HOXB5 (ENSPTRG00000009355) #7	HOXB4 (ENSPTRG00000009354) #8	HOXB3 (ENSPTRG00000052423) #9	HOXB2 (ENSPTRG00000009352) #10	HOXB1 (ENSPTRG00000009351) #11	SKAP1 (ENSPTRG00000009350) #12	SNX11 (ENSPTRG00000009349) #13	CBX1 (ENSPTRG00000052115) #14	NFE2L1 (ENSPTRG00000022631) #16	COPZ2 (ENSPTRG00000009346) #17	CDK5RAP3 (ENSPTRG00000009345) #18	PRR15L (ENSPTRG00000047216) #19	PNPO (ENSPTRG00000009343) #20	SP2 (ENSPTRG00000009342) #21	SP6 (ENSPTRG00000009340) #22	SCRN2 (ENSPTRG00000009339) #23	LRRC46 (ENSPTRG00000009338) #24	MRPL10 (ENSPTRG00000009337) #25	OSBPL7 (ENSPTRG00000009336) #26	TBX21 (ENSPTRG00000009335) #27	TBKBP1 (ENSPTRG00000009334) #28	KPNB1 (ENSPTRG00000009333) #29	NPEPPS (ENSPTRG00000009330) #30	ENSPTRG00000048037	ENSPTRG00000045761	EFCAB13 (ENSPTRG00000009329)	MYL4 (ENSPTRG00000024314)	CDC27 (ENSPTRG00000009326)	ENSPTRG00000051416	ENSPTRG00000052446
Bonobo	MODERN SPECIES	8	HOXB6 (ENSPPAG00000032229)	HOXB5 (ENSPPAG00000039181) #7	HOXB4 (ENSPPAG00000040659) #8	HOXB3 (ENSPPAG00000032630) #9	HOXB2 (ENSPPAG00000027417) #10	HOXB1 (ENSPPAG00000039129) #11	SKAP1 (ENSPPAG00000039277) #12	SNX11 (ENSPPAG00000033185) #13	ENSPPAG00000030413 #14	NFE2L1 (ENSPPAG00000031737) #16	COPZ2 (ENSPPAG00000043351) #17	ENSPPAG00000029145 #18	PRR15L (ENSPPAG00000003316) #19	PNPO (ENSPPAG00000038148) #20	SP2 (ENSPPAG00000027065) #21	SP6 (ENSPPAG00000026169) #22	SCRN2 (ENSPPAG00000028214) #23	LRRC46 (ENSPPAG00000038983) #24	MRPL10 (ENSPPAG00000034452) #25	OSBPL7 (ENSPPAG00000027887) #26	TBX21 (ENSPPAG00000033988) #27	ENSPPAG00000040088 #28	KPNB1 (ENSPPAG00000028842) #29	ENSPPAG00000041383 #30	ENSPPAG00000031240	ENSPPAG00000041328	ENSPPAG00000019537	ITGB3 (ENSPPAG00000030328)	MYL4 (ENSPPAG00000032176)	CDC27 (ENSPPAG00000035989)	RPRML (ENSPPAG00000021337)
Human	MODERN SPECIES	8	HOXB6 (ENSG00000108511)	HOXB5 (ENSG00000120075) #7	HOXB4 (ENSG00000182742) #8	HOXB3 (ENSG00000120093) #9	HOXB2 (ENSG00000173917) #10	HOXB1 (ENSG00000120094) #11	SKAP1 (ENSG00000141293) #12	SNX11 (ENSG00000002919) #13	CBX1 (ENSG00000108468) #14	NFE2L1 (ENSG00000082641) #16	COPZ2 (ENSG00000005243) #17	CDK5RAP3 (ENSG00000108465) #18	PRR15L (ENSG00000167183) #19	PNPO (ENSG00000108439) #20	SP2 (ENSG00000167182) #21	SP6 (ENSG00000189120) #22	SCRN2 (ENSG00000141295) #23	LRRC46 (ENSG00000141294) #24	MRPL10 (ENSG00000159111) #25	OSBPL7 (ENSG00000006025) #26	TBX21 (ENSG00000073861) #27	TBKBP1 (ENSG00000198933) #28	KPNB1 (ENSG00000108424) #29	NPEPPS (ENSG00000141279) #30	EFCAB13 (ENSG00000178852)	ITGB3 (ENSG00000259207)	MYL4 (ENSG00000198336)	CDC27 (ENSG00000004897)	RPRML (ENSG00000179673)	GOSR2 (ENSG00000108433)	WNT9B (ENSG00000158955)
Orangutan	MODERN SPECIES	8	HOXB6 (ENSPPYG00000008899)	HOXB5 (ENSPPYG00000008898) #7	HOXB4 (ENSPPYG00000008897) #8	HOXB3 (ENSPPYG00000008896) #9	HOXB2 (ENSPPYG00000008895) #10	HOXB1 (ENSPPYG00000008894) #11	SKAP1 (ENSPPYG00000008893) #12	SNX11 (ENSPPYG00000008892) #13	ENSPPYG00000008891 ##14	NFE2L1 (ENSPPYG00000036998) #16	ENSPPYG00000008889 #17	CDK5RAP3 (ENSPPYG00000008888) #18	PRR15L (ENSPPYG00000008887) #19	PNPO (ENSPPYG00000040967) #20	SP2 (ENSPPYG00000008885) #21	SP6 (ENSPPYG00000008884) #22	SCRN2 (ENSPPYG00000008883) #23	LRRC46 (ENSPPYG00000032761) #24	MRPL10 (ENSPPYG00000008881) #25	OSBPL7 (ENSPPYG00000008880) #26	TBX21 (ENSPPYG00000008879) #27	TBKBP1 (ENSPPYG00000008878) #28	KPNB1 (ENSPPYG00000025935) #29	NPEPPS (ENSPPYG00000008877) #30	MRPL45 (ENSPPYG00000008876) #31	GPR179 (ENSPPYG00000008874) #32	ENSPPYG00000039847	SOCS7 (ENSPPYG00000008873) #33	ARHGAP23 (ENSPPYG00000008872) #34	SRCIN1 (ENSPPYG00000008871) #36	ENSPPYG00000032356
Gibbon	MODERN SPECIES	105	ENSNLEG00000029075	HOXB6 (ENSNLEG00000002585)	HOXB5 (ENSNLEG00000002574) #7	HOXB4 (ENSNLEG00000002570) #8	HOXB2 (ENSNLEG00000002566) #10	ENSNLEG00000018815 #11	SKAP1 (ENSNLEG00000002519) #12	SNX11 (ENSNLEG00000002479) #13	ENSNLEG00000002435 #14	NFE2L1 (ENSNLEG00000002415) #16	ENSNLEG00000002409 #17	ENSNLEG00000002109 #18	PRR15L (ENSNLEG00000002102) #19	PNPO (ENSNLEG00000002062) #20	ENSNLEG00000002058 #21	SP6 (ENSNLEG00000002050) #22	SCRN2 (ENSNLEG00000001940) #23	LRRC46 (ENSNLEG00000001902) #24	MRPL10 (ENSNLEG00000001803) #25	OSBPL7 (ENSNLEG00000001657) #26	ENSNLEG00000001655 #27	ENSNLEG00000032565 #28	KPNB1 (ENSNLEG00000001446) #29
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Sooty mangabey	MODERN SPECIES	564	HOXB5 (ENSCATG00000027616) #7	HOXB3 (ENSCATG00000031126) #9	HOXB4 (ENSCATG00000040704) #8	HOXB2 (ENSCATG00000035238) #10	HOXB1 (ENSCATG00000035575) #11	SKAP1 (ENSCATG00000044458) #12	ENSCATG00000019817	SNX11 (ENSCATG00000030351) #13	ENSCATG00000034735 ##14	NFE2L1 (ENSCATG00000040775) #16	COPZ2 (ENSCATG00000042708) #17	CDK5RAP3 (ENSCATG00000006699) #18	PRR15L (ENSCATG00000020186) #19	PNPO (ENSCATG00000039934) #20	ENSCATG00000003341 #21	SP6 (ENSCATG00000020123) #22	SCRN2 (ENSCATG00000038846) #23	LRRC46 (ENSCATG00000031406) #24	MRPL10 (ENSCATG00000035686) #25	OSBPL7 (ENSCATG00000033623) #26	TBX21 (ENSCATG00000010529) #27	TBKBP1 (ENSCATG00000040564) #28	KPNB1 (ENSCATG00000037124) #29	NPEPPS (ENSCATG00000011160) #30	ENSCATG00000005112 #31	GPR179 (ENSCATG00000016000) #32	SOCS7 (ENSCATG00000038123) #33	ARHGAP23 (ENSCATG00000031687) #34	SRCIN1 (ENSCATG00000035063) #36	ENSCATG00000032235	EPOP (ENSCATG00000021365) #37
Drill	MODERN SPECIES	1297	HOXB6 (ENSMLEG00000029580)	HOXB5 (ENSMLEG00000009970) #7	HOXB3 (ENSMLEG00000026268) #9	HOXB4 (ENSMLEG00000029897) #8	HOXB2 (ENSMLEG00000031955) #10	HOXB1 (ENSMLEG00000037557) #11	SKAP1 (ENSMLEG00000029308) #12	SNX11 (ENSMLEG00000039008) #13	CBX1 (ENSMLEG00000038745) #14	NFE2L1 (ENSMLEG00000039330) #16	COPZ2 (ENSMLEG00000039090) #17	CDK5RAP3 (ENSMLEG00000033869) #18	PRR15L (ENSMLEG00000020212) #19	PNPO (ENSMLEG00000040872) #20	SP2 (ENSMLEG00000032228) #21	SP6 (ENSMLEG00000027177) #22	SCRN2 (ENSMLEG00000041491) #23	LRRC46 (ENSMLEG00000031583) #24	MRPL10 (ENSMLEG00000042780) #25	OSBPL7 (ENSMLEG00000040663) #26
Olive baboon	MODERN SPECIES	8	HOXB6 (ENSPANG00000022891)	HOXB5 (ENSPANG00000022889) #7	HOXB4 (ENSPANG00000022888) #8	ENSPANG00000045928	HOXB2 (ENSPANG00000034765) #10	HOXB1 (ENSPANG00000022886) #11	SKAP1 (ENSPANG00000022897) #12	ENSPANG00000026200	SNX11 (ENSPANG00000022898) #13	CBX1 (ENSPANG00000022906) #14	NFE2L1 (ENSPANG00000022904) #16	COPZ2 (ENSPANG00000022903) #17	CDK5RAP3 (ENSPANG00000022902) #18	PNPO (ENSPANG00000022924) #20	SP2 (ENSPANG00000022922) #21	SP6 (ENSPANG00000017158) #22	SCRN2 (ENSPANG00000022920) #23	LRRC46 (ENSPANG00000022918) #24	MRPL10 (ENSPANG00000022926) #25	OSBPL7 (ENSPANG00000022928) #26	TBX21 (ENSPANG00000022107) #27	TBKBP1 (ENSPANG00000022108) #28	KPNB1 (ENSPANG00000022099) #29	NPEPPS (ENSPANG00000022080) #30	MRPL45 (ENSPANG00000022083) #31	GPR179 (ENSPANG00000022074) #32	SOCS7 (ENSPANG00000022062) #33	ARHGAP23 (ENSPANG00000022030) #34	SRCIN1 (ENSPANG00000022035) #36	ENSPANG00000041026	EPOP (ENSPANG00000041909) #37
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.a.b	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Rhesus	MODERN SPECIES	7	HOXB5 (ENSMMUG00000051420) #7	ENSMMUG00000045203	HOXB4 (ENSMMUG00000052130) #8	HOXB2 (ENSMMUG00000057001) #10	HOXB1 (ENSMMUG00000022212) #11	SKAP1 (ENSMMUG00000050742) #12	SNX11 (ENSMMUG00000020658) #13	CBX1 (ENSMMUG00000019882) #14	NFE2L1 (ENSMMUG00000021935) #16	COPZ2 (ENSMMUG00000021934) #17	CDK5RAP3 (ENSMMUG00000004760) #18	PRR15L (ENSMMUG00000050551) #19	PNPO (ENSMMUG00000003325) #20	SP2 (ENSMMUG00000004765) #21	ENSMMUG00000053935	SP6 (ENSMMUG00000061952) #22	MRPL10 (ENSMMUG00000021486) #23	LRRC46 (ENSMMUG00000061605) #24	OSBPL7 (ENSMMUG00000019039) #26	TBX21 (ENSMMUG00000057231) #27	TBKBP1 (ENSMMUG00000019762) #28	KPNB1 (ENSMMUG00000019760) #29	NPEPPS (ENSMMUG00000005869) #30	MRPL45 (ENSMMUG00000030213) #31	GPR179 (ENSMMUG00000020528) #32	ENSMMUG00000055904	SOCS7 (ENSMMUG00000020531) #33	ARHGAP23 (ENSMMUG00000020020) #34	SRCIN1 (ENSMMUG00000005041) #36	EPOP (ENSMMUG00000013378) #37	MLLT6 (ENSMMUG00000002637)
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000062776	HOXB2 (ENSMFAG00000034146) #10	HOXB1 (ENSMFAG00000052359) #11	SKAP1 (ENSMFAG00000038763) #12	ENSMFAG00000048147	ENSMFAG00000047205	SNX11 (ENSMFAG00000001845) #13	CBX1 (ENSMFAG00000036790) #14	NFE2L1 (ENSMFAG00000035583) #16	COPZ2 (ENSMFAG00000045896) #17	CDK5RAP3 (ENSMFAG00000046364) #18	PRR15L (ENSMFAG00000030161) #19	PNPO (ENSMFAG00000039285) #20	SP2 (ENSMFAG00000038712) #21	ENSMFAG00000052999	SP6 (ENSMFAG00000030247) #22	ENSMFAG00000030335 #23	LRRC46 (ENSMFAG00000031915) #24	OSBPL7 (ENSMFAG00000001330) #26	TBX21 (ENSMFAG00000042504) #27	TBKBP1 (ENSMFAG00000001252) #28	KPNB1 (ENSMFAG00000030197) #29	NPEPPS (ENSMFAG00000003608) #30	MRPL45 (ENSMFAG00000043718) #31	GPR179 (ENSMFAG00000002774) #32	ENSMFAG00000064016	SOCS7 (ENSMFAG00000044702) #33	ENSMFAG00000062343	ENSMFAG00000049053	SRCIN1 (ENSMFAG00000031842) #36	MLLT6 (ENSMFAG00000039477)
Pig-tailed macaque	MODERN SPECIES	494	HOXB5 (ENSMNEG00000039003) #7	HOXB4 (ENSMNEG00000032435) #8	HOXB3 (ENSMNEG00000032425) #9	HOXB2 (ENSMNEG00000043416) #10	HOXB1 (ENSMNEG00000036848) #11	ENSMNEG00000033446	SKAP1 (ENSMNEG00000015541) #12	SNX11 (ENSMNEG00000034920) #13	CBX1 (ENSMNEG00000039720) #14	NFE2L1 (ENSMNEG00000037921) #16	COPZ2 (ENSMNEG00000038720) #17	CDK5RAP3 (ENSMNEG00000029039) #18	PRR15L (ENSMNEG00000028174) #19	PNPO (ENSMNEG00000037010) #20	SP2 (ENSMNEG00000029577) #21	SP6 (ENSMNEG00000023861) #22	SCRN2 (ENSMNEG00000031786) #23	LRRC46 (ENSMNEG00000037035) #24	MRPL10 (ENSMNEG00000030905) #25	OSBPL7 (ENSMNEG00000042829) #26	TBX21 (ENSMNEG00000036627) #27	TBKBP1 (ENSMNEG00000039009) #28	KPNB1 (ENSMNEG00000040927) #29	NPEPPS (ENSMNEG00000000757) #30	ENSMNEG00000044663 #31	GPR179 (ENSMNEG00000042928) #32	SOCS7 (ENSMNEG00000032316) #33	ARHGAP23 (ENSMNEG00000037605) #34	ENSMNEG00000035424	SRCIN1 (ENSMNEG00000015519) #36	EPOP (ENSMNEG00000026740) #37
Vervet Monkey	MODERN SPECIES	7	HOXB5 (ENSCSAG00000002529) #7	HOXB4 (ENSCSAG00000002530) #8	HOXB3 (ENSCSAG00000002533) #9	HOXB2 (ENSCSAG00000002536) #10	HOXB1 (ENSCSAG00000002538) #11	ENSCSAG00000019043	SKAP1 (ENSCSAG00000002542) #12	SNX11 (ENSCSAG00000002545) #13	CBX1 (ENSCSAG00000002547) #14	NFE2L1 (ENSCSAG00000002550) #16	COPZ2 (ENSCSAG00000002558) #17	CDK5RAP3 (ENSCSAG00000002562) #18	PRR15L (ENSCSAG00000019042) #19	PNPO (ENSCSAG00000002565) #20	SP2 (ENSCSAG00000002567) #21	SP6 (ENSCSAG00000019041) #22	SCRN2 (ENSCSAG00000002569) #23	LRRC46 (ENSCSAG00000002574) #24	MRPL10 (ENSCSAG00000002576) #25	OSBPL7 (ENSCSAG00000002580) #26	TBX21 (ENSCSAG00000002587) #27	TBKBP1 (ENSCSAG00000002598) #28	KPNB1 (ENSCSAG00000002605) #29	NPEPPS (ENSCSAG00000002610) #30	ENSCSAG00000002616 #31	GPR179 (ENSCSAG00000002621) #32	SOCS7 (ENSCSAG00000002628) #33	ARHGAP23 (ENSCSAG00000002632) #34	SRCIN1 (ENSCSAG00000002635) #36	EPOP (ENSCSAG00000019040) #37	MLLT6 (ENSCSAG00000002640)
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.m #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Black snub-nosed monkey	MODERN SPECIES	614																SP6 (ENSRBIG00000030852) #22	LRRC46 (ENSRBIG00000036612) #24	SCRN2 (ENSRBIG00000017158) #23	MRPL10 (ENSRBIG00000008990) #25	OSBPL7 (ENSRBIG00000042030) #26	TBX21 (ENSRBIG00000043622) #27	TBKBP1 (ENSRBIG00000042820) #28	KPNB1 (ENSRBIG00000002254) #29	NPEPPS (ENSRBIG00000031000) #30	MRPL45 (ENSRBIG00000042781) #31	GPR179 (ENSRBIG00000038216) #32	SOCS7 (ENSRBIG00000034893) #33	ARHGAP23 (ENSRBIG00000044119) #34	SRCIN1 (ENSRBIG00000044193) #36	EPOP (ENSRBIG00000041584) #37	MLLT6 (ENSRBIG00000042606)
Golden snub-nosed monkey	MODERN SPECIES	585	HOXB7 (ENSRROG00000035066)	HOXB6 (ENSRROG00000028093)	HOXB5 (ENSRROG00000030674) #7	HOXB3 (ENSRROG00000037630) #9	HOXB2 (ENSRROG00000044849) #10	HOXB1 (ENSRROG00000042747) #11	SKAP1 (ENSRROG00000031517) #12	SNX11 (ENSRROG00000029464) #13	CBX1 (ENSRROG00000041227) #14	NFE2L1 (ENSRROG00000044774) #16	COPZ2 (ENSRROG00000030969) #17	CDK5RAP3 (ENSRROG00000044651) #18	PRR15L (ENSRROG00000009484) #19	PNPO (ENSRROG00000044027) #20	SP2 (ENSRROG00000037481) #21	SP6 (ENSRROG00000008983) #22	SCRN2 (ENSRROG00000037252) #23	LRRC46 (ENSRROG00000039559) #24	MRPL10 (ENSRROG00000033938) #25	OSBPL7 (ENSRROG00000017659) #26
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.a #29	ENSGT00550000074898.b #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.a #29	ENSGT00550000074898.b #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.a #29	ENSGT00550000074898.b #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36
Bolivian squirrel monkey	MODERN SPECIES	86	HOXB5 (ENSSBOG00000018198) #7	HOXB4 (ENSSBOG00000024432) #8	HOXB3 (ENSSBOG00000030844) #9	HOXB2 (ENSSBOG00000025070) #10	HOXB1 (ENSSBOG00000034875) #11	ENSSBOG00000019520	SKAP1 (ENSSBOG00000029434) #12	SNX11 (ENSSBOG00000026967) #13	ENSSBOG00000031880 ##14	NFE2L1 (ENSSBOG00000023867) #16	COPZ2 (ENSSBOG00000033633) #17	CDK5RAP3 (ENSSBOG00000033272) #18	PRR15L (ENSSBOG00000019240) #19	PNPO (ENSSBOG00000021213) #20	SP2 (ENSSBOG00000029098) #21	SP6 (ENSSBOG00000014210) #22	SCRN2 (ENSSBOG00000027391) #23	LRRC46 (ENSSBOG00000026980) #24	MRPL10 (ENSSBOG00000004214) #25	OSBPL7 (ENSSBOG00000033435) #26	TBX21 (ENSSBOG00000028744) #27	ENSSBOG00000029189 #28	ENSSBOG00000014766	KPNB1 (ENSSBOG00000030025) #29	NPEPPS (ENSSBOG00000032725) #30	MRPL45 (ENSSBOG00000028242) #31	GPR179 (ENSSBOG00000022698) #32	SOCS7 (ENSSBOG00000031544) #33	ARHGAP23 (ENSSBOG00000017157) #34	ENSSBOG00000020882	SRCIN1 (ENSSBOG00000015321) #36
Capuchin	MODERN SPECIES	228	HOXB6 (ENSCCAG00000022842)	HOXB5 (ENSCCAG00000036867) #7	HOXB4 (ENSCCAG00000020311) #8	HOXB3 (ENSCCAG00000013598) #9	HOXB2 (ENSCCAG00000024035) #10	HOXB1 (ENSCCAG00000027667) #11	ENSCCAG00000019181	SKAP1 (ENSCCAG00000035663) #12	SNX11 (ENSCCAG00000030167) #13	CBX1 (ENSCCAG00000025085) #14	NFE2L1 (ENSCCAG00000029090) #16	COPZ2 (ENSCCAG00000021292) #17	CDK5RAP3 (ENSCCAG00000038053) #18	PNPO (ENSCCAG00000029175) #20	SP2 (ENSCCAG00000038047) #21	SP6 (ENSCCAG00000020330) #22	SCRN2 (ENSCCAG00000031435) #23	LRRC46 (ENSCCAG00000030568) #24	MRPL10 (ENSCCAG00000023150) #25	OSBPL7 (ENSCCAG00000034097) #26	TBX21 (ENSCCAG00000026112) #27	TBKBP1 (ENSCCAG00000026129) #28	ENSCCAG00000029263 #29	NPEPPS (ENSCCAG00000035472) #30	MRPL45 (ENSCCAG00000034579) #31	GPR179 (ENSCCAG00000037056) #32	SOCS7 (ENSCCAG00000033044) #33	ARHGAP23 (ENSCCAG00000025162) #34	SRCIN1 (ENSCCAG00000029783) #36	ENSCCAG00000023743	MLLT6 (ENSCCAG00000028213)
Marmoset	MODERN SPECIES	17	HOXB4 (ENSCJAG00000007480) #8	HOXB3 (ENSCJAG00000007487) #9	HOXB2 (ENSCJAG00000007494) #10	HOXB1 (ENSCJAG00000007496) #11	ENSCJAG00000038853	SKAP1 (ENSCJAG00000007504) #12	SNX11 (ENSCJAG00000039549) #13	CBX1 (ENSCJAG00000042052) #14	NFE2L1 (ENSCJAG00000007542) #16	ENSCJAG00000058197	COPZ2 (ENSCJAG00000007567) #17	CDK5RAP3 (ENSCJAG00000007669) #18	PRR15L (ENSCJAG00000044487) #19	PNPO (ENSCJAG00000007693) #20	SP2 (ENSCJAG00000007713) #21	SP6 (ENSCJAG00000043946) #22	SCRN2 (ENSCJAG00000047705) #23	LRRC46 (ENSCJAG00000007776) #24	MRPL10 (ENSCJAG00000007787) #25	OSBPL7 (ENSCJAG00000007585) #26	TBX21 (ENSCJAG00000007796) #27	TBKBP1 (ENSCJAG00000045710) #28	KPNB1 (ENSCJAG00000007834) #29	NPEPPS (ENSCJAG00000007985) #30	ENSCJAG00000048573	MRPL45 (ENSCJAG00000008080) #31	GPR179 (ENSCJAG00000008100) #32	SOCS7 (ENSCJAG00000008108) #33	ENSCJAG00000008111	ARHGAP23 (ENSCJAG00000008112) #34	SRCIN1 (ENSCJAG00000008123) #36
Mas night monkey	MODERN SPECIES	481	HOXB6 (ENSANAG00000023964)	HOXB5 (ENSANAG00000024299) #7	HOXB4 (ENSANAG00000024005) #8	HOXB3 (ENSANAG00000032072) #9	HOXB2 (ENSANAG00000023626) #10	HOXB1 (ENSANAG00000032306) #11	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #12	SNX11 (ENSANAG00000022588) #13	ENSANAG00000036853 ##14	NFE2L1 (ENSANAG00000027606) #16	COPZ2 (ENSANAG00000023309) #17	CDK5RAP3 (ENSANAG00000021880) #18	PNPO (ENSANAG00000026080) #20	SP2 (ENSANAG00000032738) #21	SP6 (ENSANAG00000019338) #22	SCRN2 (ENSANAG00000021482) #23	LRRC46 (ENSANAG00000028496) #24	MRPL10 (ENSANAG00000022792) #25	OSBPL7 (ENSANAG00000021406) #26	TBX21 (ENSANAG00000037999) #27	TBKBP1 (ENSANAG00000020710) #28	ENSANAG00000024932 #29	ENSANAG00000019395	NPEPPS (ENSANAG00000028371) #30	MRPL45 (ENSANAG00000028167) #31	GPR179 (ENSANAG00000033667) #32	SOCS7 (ENSANAG00000028278) #33	ARHGAP23 (ENSANAG00000026348) #34	ENSANAG00000022130	SRCIN1 (ENSANAG00000027395) #36
Tarsier	MODERN SPECIES	7208								SKAP1 (ENSTSYG00000008218) #12	SNX11 (ENSTSYG00000035487) #13	CBX1 (ENSTSYG00000034806) #14	NFE2L1 (ENSTSYG00000011468) #16	COPZ2 (ENSTSYG00000030074) #17	CDK5RAP3 (ENSTSYG00000010313) #18	PNPO (ENSTSYG00000002012) #20	SP2 (ENSTSYG00000013766) #21	SP6 (ENSTSYG00000031192) #22	SCRN2 (ENSTSYG00000003730) #23	LRRC46 (ENSTSYG00000003710) #24	MRPL10 (ENSTSYG00000034759) #25	OSBPL7 (ENSTSYG00000014378) #26
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.h #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.h #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Mouse lemur	MODERN SPECIES	7	HOXB6 (ENSMICG00000042216)	HOXB5 (ENSMICG00000047139) #7	HOXB4 (ENSMICG00000043173) #8	HOXB3 (ENSMICG00000007522) #9	HOXB2 (ENSMICG00000038222) #10	HOXB1 (ENSMICG00000048152) #11	SKAP1 (ENSMICG00000047158) #12	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #13	NFE2L1 (ENSMICG00000014716) #16	ENSMICG00000009510 #14	COPZ2 (ENSMICG00000014097) #17	CDK5RAP3 (ENSMICG00000014077) #18	ENSMICG00000014065 #20	SP2 (ENSMICG00000036051) #21	SP6 (ENSMICG00000047695) #22	SCRN2 (ENSMICG00000004823) #23	LRRC46 (ENSMICG00000004816) #24	MRPL10 (ENSMICG00000048091) #25	OSBPL7 (ENSMICG00000004799) #26	TBX21 (ENSMICG00000035345) #27	TBKBP1 (ENSMICG00000012069) #28	KPNB1 (ENSMICG00000012059) #29	NPEPPS (ENSMICG00000012034) #30	MRPL45 (ENSMICG00000000626) #31	GPR179 (ENSMICG00000000628) #32	SOCS7 (ENSMICG00000000636) #33	ARHGAP23 (ENSMICG00000000638) #34	SRCIN1 (ENSMICG00000000639) #36	MLLT6 (ENSMICG00000002976)	CISD3 (ENSMICG00000030046)
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.h #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Coquerels sifaka	MODERN SPECIES	120	HOXB7 (ENSPCOG00000028248)	HOXB6 (ENSPCOG00000019931)	HOXB5 (ENSPCOG00000015692) #7	HOXB4 (ENSPCOG00000022963) #8	HOXB3 (ENSPCOG00000020113) #9	HOXB2 (ENSPCOG00000017380) #10	HOXB1 (ENSPCOG00000025930) #11	SKAP1 (ENSPCOG00000022221) #12	SNX11 (ENSPCOG00000011015) #13	ENSPCOG00000010902 #14	NFE2L1 (ENSPCOG00000021740) #16	COPZ2 (ENSPCOG00000018359) #17	CDK5RAP3 (ENSPCOG00000016598) #18	PNPO (ENSPCOG00000017906) #20	SP2 (ENSPCOG00000017198) #21	SP6 (ENSPCOG00000008529) #22	SCRN2 (ENSPCOG00000014438) #23	LRRC46 (ENSPCOG00000015829) #24	MRPL10 (ENSPCOG00000025492) #25	OSBPL7 (ENSPCOG00000019714) #26	TBX21 (ENSPCOG00000014387) #27	TBKBP1 (ENSPCOG00000026427) #28	KPNB1 (ENSPCOG00000026259) #29	ENSPCOG00000014331 #30	ENSPCOG00000027158 #30	MRPL45 (ENSPCOG00000014660) #31	GPR179 (ENSPCOG00000007958) #32	SOCS7 (ENSPCOG00000023874) #33	ARHGAP23 (ENSPCOG00000013530) #34	SRCIN1 (ENSPCOG00000008761) #36	MLLT6 (ENSPCOG00000016436)
Greater bamboo lemur	MODERN SPECIES	107								NFE2L1 (ENSPSMG00000007285) #16	ENSPSMG00000007339 #17	ENSPSMG00000007342	ENSPSMG00000007395 #18	PRR15L (ENSPSMG00000007406) #19	PNPO (ENSPSMG00000007445) #20	SP2 (ENSPSMG00000007456) #21	ENSPSMG00000007462 #21	SP6 (ENSPSMG00000007463) #22	SCRN2 (ENSPSMG00000007491) #23	LRRC46 (ENSPSMG00000007500) #24	MRPL10 (ENSPSMG00000007514) #25	OSBPL7 (ENSPSMG00000007730) #26	TBX21 (ENSPSMG00000007791) #27	TBKBP1 (ENSPSMG00000007810) #28	KPNB1 (ENSPSMG00000007848) #29	NPEPPS (ENSPSMG00000007984) #30	MRPL45 (ENSPSMG00000008060) #31	GPR179 (ENSPSMG00000008075) #32	SOCS7 (ENSPSMG00000008100) #33	ARHGAP23 (ENSPSMG00000008194) #34	SRCIN1 (ENSPSMG00000008297) #36	ENSPSMG00000008308	EPOP (ENSPSMG00000008312) #37
Bushbaby	MODERN SPECIES	133	HOXB6 (ENSOGAG00000008661)	HOXB5 (ENSOGAG00000032432) #7	HOXB4 (ENSOGAG00000033709) #8	HOXB3 (ENSOGAG00000032090) #9	HOXB2 (ENSOGAG00000029280) #10	HOXB1 (ENSOGAG00000031645) #11	SKAP1 (ENSOGAG00000015855) #12	SNX11 (ENSOGAG00000015854) #13	CBX1 (ENSOGAG00000005658) #14	NFE2L1 (ENSOGAG00000025191) #16	COPZ2 (ENSOGAG00000004954) #17	CDK5RAP3 (ENSOGAG00000004951) #18	PRR15L (ENSOGAG00000006187) #19	PNPO (ENSOGAG00000006186) #20	SP2 (ENSOGAG00000030380) #21	SP6 (ENSOGAG00000030282) #22	SCRN2 (ENSOGAG00000006181) #23	LRRC46 (ENSOGAG00000006177) #24	MRPL10 (ENSOGAG00000006173) #25	OSBPL7 (ENSOGAG00000006166) #26	TBX21 (ENSOGAG00000006160) #27	TBKBP1 (ENSOGAG00000032523) #28	KPNB1 (ENSOGAG00000006153) #29	NPEPPS (ENSOGAG00000006365) #30	MRPL45 (ENSOGAG00000015816) #31	GPR179 (ENSOGAG00000031431) #32	SOCS7 (ENSOGAG00000012422) #33	ARHGAP23 (ENSOGAG00000030856) #34	SRCIN1 (ENSOGAG00000009948) #36	EPOP (ENSOGAG00000030366) #37	MLLT6 (ENSOGAG00000011422)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Suina	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #36
Pig	MODERN SPECIES	3	HOXB6 (ENSSSCG00000017539)	HOXB5 (ENSSSCG00000017540) #7	HOXB4 (ENSSSCG00000017535) #8	HOXB3 (ENSSSCG00000017534) #9	HOXB2 (ENSSSCG00000017533) #10	HOXB1 (ENSSSCG00000017532) #11	SKAP1 (ENSSSCG00000017527) #12	SNX11 (ENSSSCG00000017528) #13	CBX1 (ENSSSCG00000017529) #14	NFE2L1 (ENSSSCG00000017525) #16	COPZ2 (ENSSSCG00000017526) #17	CDK5RAP3 (ENSSSCG00000017524) #18	PRR15L (ENSSSCG00000054179) #19	PNPO (ENSSSCG00000032782) #20	SP2 (ENSSSCG00000017516) #21	SP6 (ENSSSCG00000017522) #22	SCRN2 (ENSSSCG00000017521) #23	LRRC46 (ENSSSCG00000017520) #24	MRPL10 (ENSSSCG00000017519) #25	OSBPL7 (ENSSSCG00000017518) #26	TBX21 (ENSSSCG00000017517) #27	ENSSSCG00000057498 #28	KPNB1 (ENSSSCG00000017514) #29	NPEPPS (ENSSSCG00000017513) #30	MRPL45 (ENSSSCG00000023263) #31	GPR179 (ENSSSCG00000020884) #32	SOCS7 (ENSSSCG00000018057) #33	ARHGAP23 (ENSSSCG00000018058) #34	ENSSSCG00000045701	ENSSSCG00000046446	SRCIN1 (ENSSSCG00000018056) #36
Chacoan peccary	MODERN SPECIES	145	HOXB6 (ENSCWAG00000022069)	HOXB5 (ENSCWAG00000022071) #7	HOXB4 (ENSCWAG00000022074) #8	HOXB3 (ENSCWAG00000022077) #9	HOXB2 (ENSCWAG00000022078) #10	HOXB1 (ENSCWAG00000022080) #11	SKAP1 (ENSCWAG00000000046) #12	SNX11 (ENSCWAG00000000070) #13	CBX1 (ENSCWAG00000000121) #14	NFE2L1 (ENSCWAG00000000185) #16	COPZ2 (ENSCWAG00000000341) #17	CDK5RAP3 (ENSCWAG00000000377) #18	PRR15L (ENSCWAG00000000410) #19	PNPO (ENSCWAG00000000427) #20	SP2 (ENSCWAG00000000474) #21	SP6 (ENSCWAG00000000502) #22	SCRN2 (ENSCWAG00000000520) #23	LRRC46 (ENSCWAG00000000570) #24	MRPL10 (ENSCWAG00000000589) #25	OSBPL7 (ENSCWAG00000000623) #26	TBX21 (ENSCWAG00000000709) #27	TBKBP1 (ENSCWAG00000000726) #28	KPNB1 (ENSCWAG00000000755) #29	NPEPPS (ENSCWAG00000000826) #30	MRPL45 (ENSCWAG00000000905) #31	GPR179 (ENSCWAG00000000941) #32	SOCS7 (ENSCWAG00000001002) #33	ARHGAP23 (ENSCWAG00000001049) #34	SRCIN1 (ENSCWAG00000001149) #36	EPOP (ENSCWAG00000001220) #37	MLLT6 (ENSCWAG00000001240)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Narwhal	MODERN SPECIES	316	HOXB6 (ENSMMNG00015016215)	HOXB5 (ENSMMNG00015016235) #7	HOXB4 (ENSMMNG00015016252) #8	HOXB3 (ENSMMNG00015016287) #9	HOXB2 (ENSMMNG00015016324) #10	HOXB1 (ENSMMNG00015016356) #11	SKAP1 (ENSMMNG00015016386) #12	SNX11 (ENSMMNG00015016452) #13	CBX1 (ENSMMNG00015016582) #14	NFE2L1 (ENSMMNG00015016634) #16	COPZ2 (ENSMMNG00015016743) #17	CDK5RAP3 (ENSMMNG00015016820) #18	PRR15L (ENSMMNG00015016868) #19	PNPO (ENSMMNG00015016895) #20	SP2 (ENSMMNG00015016948) #21	SP6 (ENSMMNG00015016969) #22	SCRN2 (ENSMMNG00015016985) #23	LRRC46 (ENSMMNG00015017038) #24	MRPL10 (ENSMMNG00015017084) #25	OSBPL7 (ENSMMNG00015017115) #26	TBX21 (ENSMMNG00015017166) #27	TBKBP1 (ENSMMNG00015017190) #28	KPNB1 (ENSMMNG00015017215) #29	NPEPPS (ENSMMNG00015017277) #30	MRPL45 (ENSMMNG00015017435) #31	GPR179 (ENSMMNG00015017480) #32	SOCS7 (ENSMMNG00015017571) #33	ARHGAP23 (ENSMMNG00015017676) #34	SRCIN1 (ENSMMNG00015017795) #36	ENSMMNG00015017965	EPOP (ENSMMNG00015017989) #37
Beluga whale	MODERN SPECIES	26	HOXB5 (ENSDLEG00000004826) #7	HOXB4 (ENSDLEG00000004820) #8	HOXB3 (ENSDLEG00000004817) #9	HOXB2 (ENSDLEG00000004813) #10	HOXB1 (ENSDLEG00000004807) #11	SKAP1 (ENSDLEG00000004779) #12	SNX11 (ENSDLEG00000004765) #13	CBX1 (ENSDLEG00000004754) ##14	NFE2L1 (ENSDLEG00000004744) #16	ENSDLEG00000004734	COPZ2 (ENSDLEG00000004721) #17	CDK5RAP3 (ENSDLEG00000004709) #18	PRR15L (ENSDLEG00000004704) #19	PNPO (ENSDLEG00000004701) #20	SP2 (ENSDLEG00000004697) #21	SP6 (ENSDLEG00000004694) #22	SCRN2 (ENSDLEG00000004688) #23	ENSDLEG00000004684	MRPL10 (ENSDLEG00000004678) #25	OSBPL7 (ENSDLEG00000004366) #26	TBX21 (ENSDLEG00000004247) #27	TBKBP1 (ENSDLEG00000004240) #28	KPNB1 (ENSDLEG00000004223) #29	NPEPPS (ENSDLEG00000004076) #30	MRPL45 (ENSDLEG00000004037) #31	GPR179 (ENSDLEG00000004032) #32	SOCS7 (ENSDLEG00000004014) #33	ARHGAP23 (ENSDLEG00000003989) #34	ENSDLEG00000003976	SRCIN1 (ENSDLEG00000003944) #36	ENSDLEG00000003932
Vaquita	MODERN SPECIES	12	HOXB6 (ENSPSNG00000017525)	HOXB5 (ENSPSNG00000017559) #7	HOXB4 (ENSPSNG00000017604) #8	HOXB3 (ENSPSNG00000017636) #9	HOXB2 (ENSPSNG00000017708) #10	HOXB1 (ENSPSNG00000017728) #11	SKAP1 (ENSPSNG00000017760) #12	SNX11 (ENSPSNG00000017889) #13	ENSPSNG00000017984 #14	NFE2L1 (ENSPSNG00000018052) #16	COPZ2 (ENSPSNG00000018262) #17	CDK5RAP3 (ENSPSNG00000018321) #18	PRR15L (ENSPSNG00000018399) #19	PNPO (ENSPSNG00000018423) #20	SP2 (ENSPSNG00000018528) #21	SP6 (ENSPSNG00000018568) #22	SCRN2 (ENSPSNG00000018588) #23	LRRC46 (ENSPSNG00000018676) #24	ENSPSNG00000018757	OSBPL7 (ENSPSNG00000018799) #26	TBX21 (ENSPSNG00000018852) #27	TBKBP1 (ENSPSNG00000018911) #28	KPNB1 (ENSPSNG00000018946) #29	NPEPPS (ENSPSNG00000019016) #30	MRPL45 (ENSPSNG00000019227) #31	GPR179 (ENSPSNG00000019300) #32	SOCS7 (ENSPSNG00000019467) #33	ARHGAP23 (ENSPSNG00000019589) #34	SRCIN1 (ENSPSNG00000019720) #36	ENSPSNG00000020092	EPOP (ENSPSNG00000020118) #37
Dolphin	MODERN SPECIES	6789														PNPO (ENSTTRG00000012493) #20	SP2 (ENSTTRG00000012483) #21	SP6 (ENSTTRG00000012481) #22	SCRN2 (ENSTTRG00000012472) #23	LRRC46 (ENSTTRG00000012463) #24	MRPL10 (ENSTTRG00000012452) #25	OSBPL7 (ENSTTRG00000012411) #26
Sperm whale	MODERN SPECIES	389																SP6 (ENSPCTG00005015038) #22	LRRC46 (ENSPCTG00005014931) #24	SCRN2 (ENSPCTG00005014718) #23	OSBPL7 (ENSPCTG00005014620) #26
Blue whale	MODERN SPECIES	12	HOXB6 (ENSBMSG00010017746)	HOXB5 (ENSBMSG00010017772) #7	HOXB4 (ENSBMSG00010017814) #8	HOXB3 (ENSBMSG00010017838) #9	HOXB2 (ENSBMSG00010017860) #10	HOXB1 (ENSBMSG00010017892) #11	SKAP1 (ENSBMSG00010017921) #12	SNX11 (ENSBMSG00010018006) #13	CBX1 (ENSBMSG00010018099) #14	NFE2L1 (ENSBMSG00010018163) #16	COPZ2 (ENSBMSG00010018306) #17	CDK5RAP3 (ENSBMSG00010018481) #18	PRR15L (ENSBMSG00010018513) #19	PNPO (ENSBMSG00010018544) #20	SP2 (ENSBMSG00010018607) #21	SP6 (ENSBMSG00010018628) #22	ENSBMSG00010018650	ENSBMSG00010018673	ENSBMSG00010018688	ENSBMSG00010018708	ENSBMSG00010018759	ENSBMSG00010018791	CA10 (ENSBMSG00010018845)	ENSBMSG00010018906	KIF2B (ENSBMSG00010018945)	ENSBMSG00010019021	COX11 (ENSBMSG00010019249)	STXBP4 (ENSBMSG00010019312)	ENSBMSG00010019451	ENSBMSG00010019467	MMD (ENSBMSG00010019519)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000154688.b.j	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Goat	MODERN SPECIES	10	HOXB4 (ENSCHIG00000025323) #8	HOXB3 (ENSCHIG00000013978) #9	HOXB2 (ENSCHIG00000025836) #10	HOXB1 (ENSCHIG00000017872) #11	ENSCHIG00000010180	ENSCHIG00000015920 #12	ENSCHIG00000026878 #12	SNX11 (ENSCHIG00000017547) #13	CBX1 (ENSCHIG00000010985) #14	NFE2L1 (ENSCHIG00000015427) #16	COPZ2 (ENSCHIG00000026544) #17	CDK5RAP3 (ENSCHIG00000025420) #18	PRR15L (ENSCHIG00000008261) #19	PNPO (ENSCHIG00000004606) #20	SP2 (ENSCHIG00000018648) #21	SP6 (ENSCHIG00000009897) #22	SCRN2 (ENSCHIG00000026802) #23	LRRC46 (ENSCHIG00000015497) #24	MRPL10 (ENSCHIG00000027033) #25	OSBPL7 (ENSCHIG00000023060) #26	TBX21 (ENSCHIG00000021993) #27	TBKBP1 (ENSCHIG00000016860) #28	KPNB1 (ENSCHIG00000014896) #29	NPEPPS (ENSCHIG00000022782) #30	MRPL45 (ENSCHIG00000014110) #31	GPR179 (ENSCHIG00000026098) #32	SOCS7 (ENSCHIG00000012449) #33	ARHGAP23 (ENSCHIG00000023996) #34	SRCIN1 (ENSCHIG00000022297) #36	ENSCHIG00000019374	EPOP (ENSCHIG00000008501) #37
Rambouillet Sheep	MODERN SPECIES	2	HOXB6 (ENSOARG00020022021)	HOXB5 (ENSOARG00020022004) #7	HOXB4 (ENSOARG00020021954) #8	HOXB3 (ENSOARG00020021943) #9	HOXB2 (ENSOARG00020021907) #10	HOXB1 (ENSOARG00020021886) #11	SKAP1 (ENSOARG00020021817) #12	SNX11 (ENSOARG00020021783) #13	CBX1 (ENSOARG00020021741) #14	NFE2L1 (ENSOARG00020021460) #16	COPZ2 (ENSOARG00020021377) #17	CDK5RAP3 (ENSOARG00020021339) #18	PRR15L (ENSOARG00020021319) #19	PNPO (ENSOARG00020021017) #20	SP2 (ENSOARG00020020972) #21	SP6 (ENSOARG00020020944) #22	SCRN2 (ENSOARG00020020770) #23	LRRC46 (ENSOARG00020020663) #24	MRPL10 (ENSOARG00020020614) #25	OSBPL7 (ENSOARG00020020494) #26	TBX21 (ENSOARG00020020433) #27	TBKBP1 (ENSOARG00020020372) #28	KPNB1 (ENSOARG00020020287) #29	NPEPPS (ENSOARG00020020009) #30	MRPL45 (ENSOARG00020019879) #31	GPR179 (ENSOARG00020019685) #32	SOCS7 (ENSOARG00020019553) #33	ARHGAP23 (ENSOARG00020019239) #34	SRCIN1 (ENSOARG00020018349) #36	ENSOARG00020018303 #37	ENSOARG00020018283
Bovinae	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00960000190232	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36
Bos	ANCESTRAL SPECIES	1	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.i #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.e.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00960000190232	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.i #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.e.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00960000190232	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964
Cow	MODERN SPECIES	10	HOXB6 (ENSBTAG00000050006)	HOXB5 (ENSBTAG00000045835) #7	HOXB4 (ENSBTAG00000039599) #8	HOXB3 (ENSBTAG00000021427) #9	HOXB2 (ENSBTAG00000009979) #10	HOXB1 (ENSBTAG00000007603) #11	SKAP1 (ENSBTAG00000000641) #12	SNX11 (ENSBTAG00000020321) #13	CBX1 (ENSBTAG00000002949) #14	NFE2L1 (ENSBTAG00000013653) #16	COPZ2 (ENSBTAG00000039954) #17	CDK5RAP3 (ENSBTAG00000014202) #18	PRR15L (ENSBTAG00000012249) #19	PNPO (ENSBTAG00000012259) #20	SP2 (ENSBTAG00000013740) #21	SP6 (ENSBTAG00000001825) #22	SCRN2 (ENSBTAG00000001828) #23	LRRC46 (ENSBTAG00000001830) #24	MRPL10 (ENSBTAG00000001832) #25	OSBPL7 (ENSBTAG00000013523) #26	TBX21 (ENSBTAG00000014199) #27	TBKBP1 (ENSBTAG00000011280) #28	KPNB1 (ENSBTAG00000006586) #29	NPEPPS (ENSBTAG00000011435) #30	MRPL45 (ENSBTAG00000025001) #31	ENSBTAG00000049522	GPR179 (ENSBTAG00000001804) #32	SOCS7 (ENSBTAG00000008535) #33	ARHGAP23 (ENSBTAG00000016911) #34	SRCIN1 (ENSBTAG00000013469) #36	ENSBTAG00000053767
Hybrid Bos Indicus	MODERN SPECIES	10	HOXB5 (ENSBIXG00005029559) #7	HOXB4 (ENSBIXG00005029577) #8	HOXB3 (ENSBIXG00005029591) #9	HOXB2 (ENSBIXG00005029607) #10	HOXB1 (ENSBIXG00005029618) #11	ENSBIXG00005029636	SKAP1 (ENSBIXG00005029657) #12	SNX11 (ENSBIXG00005029679) #13	CBX1 (ENSBIXG00005029691) #14	NFE2L1 (ENSBIXG00005029748) #16	COPZ2 (ENSBIXG00005029862) #17	CDK5RAP3 (ENSBIXG00005029886) #18	PRR15L (ENSBIXG00005029905) #19	PNPO (ENSBIXG00005029918) #20	ENSBIXG00005029934 #21	SP6 (ENSBIXG00005029948) #22	SCRN2 (ENSBIXG00005029976) #23	LRRC46 (ENSBIXG00005030008) #24	MRPL10 (ENSBIXG00005030023) #25	OSBPL7 (ENSBIXG00005030039) #26	TBX21 (ENSBIXG00005030084) #27	TBKBP1 (ENSBIXG00005030097) #28	KPNB1 (ENSBIXG00005030131) #29	NPEPPS (ENSBIXG00005030159) #30	MRPL45 (ENSBIXG00005030219) #31	ENSBIXG00005030228	GPR179 (ENSBIXG00005030235) #32	SOCS7 (ENSBIXG00005030269) #33	ARHGAP23 (ENSBIXG00005030331) #34	SRCIN1 (ENSBIXG00005030456) #36	EPOP (ENSBIXG00005030515) #37
Bos_a	ANCESTRAL SPECIES		ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b.i #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.e.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00960000190232	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36
Wild yak	MODERN SPECIES	953																SP6 (ENSBMUG00000000772) #22	SCRN2 (ENSBMUG00000000797) #23	LRRC46 (ENSBMUG00000000816) #24	MRPL10 (ENSBMUG00000000829) #25	OSBPL7 (ENSBMUG00000000874) #26	TBX21 (ENSBMUG00000000904) #27	TBKBP1 (ENSBMUG00000000913) #28	KPNB1 (ENSBMUG00000000951) #29	NPEPPS (ENSBMUG00000001034) #30	MRPL45 (ENSBMUG00000001074) #31	ENSBMUG00000001086	GPR179 (ENSBMUG00000001100) #32	SOCS7 (ENSBMUG00000001131) #33	ARHGAP23 (ENSBMUG00000001176) #34	SRCIN1 (ENSBMUG00000001263) #36	ENSBMUG00000001292
Domestic yak	MODERN SPECIES	10	HOXB6 (ENSBGRG00000021579)	HOXB5 (ENSBGRG00000021555) #7	HOXB4 (ENSBGRG00000021501) #8	HOXB3 (ENSBGRG00000021464) #9	HOXB2 (ENSBGRG00000021425) #10	HOXB1 (ENSBGRG00000021404) #11	SKAP1 (ENSBGRG00000021202) #12	SNX11 (ENSBGRG00000021141) #13	CBX1 (ENSBGRG00000021062) #14	NFE2L1 (ENSBGRG00000020783) #16	COPZ2 (ENSBGRG00000020574) #17	CDK5RAP3 (ENSBGRG00000020283) #18	ENSBGRG00000020194 #19	PNPO (ENSBGRG00000019898) #20	ENSBGRG00000019774 #21	SP6 (ENSBGRG00000019744) #22	SCRN2 (ENSBGRG00000019672) #23	LRRC46 (ENSBGRG00000019490) #24	MRPL10 (ENSBGRG00000019422) #25	OSBPL7 (ENSBGRG00000019260) #26	TBX21 (ENSBGRG00000019171) #27	TBKBP1 (ENSBGRG00000019067) #28	KPNB1 (ENSBGRG00000018571) #29	NPEPPS (ENSBGRG00000018276) #30	ENSBGRG00000018222	MRPL45 (ENSBGRG00000017975) #31	ENSBGRG00000017816 #32	SOCS7 (ENSBGRG00000017476) #33	ARHGAP23 (ENSBGRG00000017050) #34	ENSBGRG00000016987	SRCIN1 (ENSBGRG00000015645) #36
American bison	MODERN SPECIES	3101	HOXB6 (ENSBBBG00000021567)	HOXB5 (ENSBBBG00000021577) #7	HOXB4 (ENSBBBG00000021585) #8	HOXB3 (ENSBBBG00000005740) #9	HOXB2 (ENSBBBG00000021598) #10	HOXB1 (ENSBBBG00000021601) #11	SKAP1 (ENSBBBG00000021634) #12	SNX11 (ENSBBBG00000021652) #13	ENSBBBG00000021675 ##14	NFE2L1 (ENSBBBG00000021740) #16	COPZ2 (ENSBBBG00000021782) #17	CDK5RAP3 (ENSBBBG00000021808) #18	PRR15L (ENSBBBG00000021809) #19	PNPO (ENSBBBG00000021862) #20	SP2 (ENSBBBG00000021914) #21	SP6 (ENSBBBG00000021924) #22	SCRN2 (ENSBBBG00000021958) #23	LRRC46 (ENSBBBG00000021972) #24	MRPL10 (ENSBBBG00000021983) #25	OSBPL7 (ENSBBBG00000022056) #26	TBX21 (ENSBBBG00000005826) #27	ENSBBBG00000022076 #28	KPNB1 (ENSBBBG00000022131) #29	NPEPPS (ENSBBBG00000022236) #30	ENSBBBG00000022252	MRPL45 (ENSBBBG00000022294) #31	ENSBBBG00000005882 #32	SOCS7 (ENSBBBG00000005889) #33	ENSBBBG00000005896 #34	ENSBBBG00000022356	SRCIN1 (ENSBBBG00000022427) #36
Siberian musk deer	MODERN SPECIES	1210	HOXB4 (ENSMMSG00000024528) #8	ENSMMSG00000024530	HOXB3 (ENSMMSG00000024531) #9	HOXB2 (ENSMMSG00000024532) #10	HOXB1 (ENSMMSG00000024533) #11	ENSMMSG00000024535	SKAP1 (ENSMMSG00000024536) #12	SNX11 (ENSMMSG00000024538) #13	CBX1 (ENSMMSG00000024540) #14	NFE2L1 (ENSMMSG00000024541) #16	COPZ2 (ENSMMSG00000024546) #17	CDK5RAP3 (ENSMMSG00000024548) #18	PRR15L (ENSMMSG00000024549) #19	PNPO (ENSMMSG00000024550) #20	SP2 (ENSMMSG00000024551) #21	SP6 (ENSMMSG00000018224) #22	SCRN2 (ENSMMSG00000018238) #23	LRRC46 (ENSMMSG00000018351) #24	MRPL10 (ENSMMSG00000018396) #25	OSBPL7 (ENSMMSG00000018422) #26	ENSMMSG00000018451	TBX21 (ENSMMSG00000018475) #27	TBKBP1 (ENSMMSG00000018512) #28	KPNB1 (ENSMMSG00000018546) #29	NPEPPS (ENSMMSG00000018632) #30	ENSMMSG00000018805	MRPL45 (ENSMMSG00000018849) #31	GPR179 (ENSMMSG00000018906) #32	SOCS7 (ENSMMSG00000019056) #33	ARHGAP23 (ENSMMSG00000019156) #34	SRCIN1 (ENSMMSG00000019355) #36
Yarkand deer	MODERN SPECIES	28	HOXB4 (ENSCHYG00000004668) #8	HOXB3 (ENSCHYG00000004670) #9	HOXB2 (ENSCHYG00000004674) #10	HOXB1 (ENSCHYG00000004684) #11	SKAP1 (ENSCHYG00000004692) #12	ENSCHYG00000004720	SNX11 (ENSCHYG00000004737) #13	CBX1 (ENSCHYG00000004750) #14	NFE2L1 (ENSCHYG00000004781) #16	COPZ2 (ENSCHYG00000004829) #17	ENSCHYG00000004851	CDK5RAP3 (ENSCHYG00000000101) #18	PRR15L (ENSCHYG00000000125) #19	PNPO (ENSCHYG00000000157) #20	SP2 (ENSCHYG00000000198) #21	SP6 (ENSCHYG00000000221) #22	SCRN2 (ENSCHYG00000000227) #23	LRRC46 (ENSCHYG00000000251) #24	MRPL10 (ENSCHYG00000000265) #25	OSBPL7 (ENSCHYG00000000286) #26	TBX21 (ENSCHYG00000000318) #27	TBKBP1 (ENSCHYG00000000333) #28	KPNB1 (ENSCHYG00000000360) #29	ENSCHYG00000000411	NPEPPS (ENSCHYG00000000456) #30	MRPL45 (ENSCHYG00000000557) #31	GPR179 (ENSCHYG00000000586) #32	SOCS7 (ENSCHYG00000000633) #33	ARHGAP23 (ENSCHYG00000000727) #34	ENSCHYG00000000749	SRCIN1 (ENSCHYG00000000846) #36
Camelidae	ANCESTRAL SPECIES	60	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.a.a ##14	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Arabian camel	MODERN SPECIES	7	HOXB6 (ENSCDRG00005018029)	HOXB5 (ENSCDRG00005018055) #7	HOXB4 (ENSCDRG00005018079) #8	HOXB3 (ENSCDRG00005018104) #9	HOXB2 (ENSCDRG00005018121) #10	HOXB1 (ENSCDRG00005018147) #11	SKAP1 (ENSCDRG00005018166) #12	SNX11 (ENSCDRG00005018232) #13	CBX1 (ENSCDRG00005018330) ##14	NFE2L1 (ENSCDRG00005018357) #16	ENSCDRG00005018515	COPZ2 (ENSCDRG00005018538) #17	CDK5RAP3 (ENSCDRG00005018564) #18	PRR15L (ENSCDRG00005018636) #19	SP2 (ENSCDRG00005018756) #21	SP6 (ENSCDRG00005018791) #22	SCRN2 (ENSCDRG00005018805) #23	LRRC46 (ENSCDRG00005018865) #24	MRPL10 (ENSCDRG00005018906) #25	OSBPL7 (ENSCDRG00005018943) #26	TBX21 (ENSCDRG00005018980) #27	TBKBP1 (ENSCDRG00005018994) #28	KPNB1 (ENSCDRG00005019017) #29	NPEPPS (ENSCDRG00005019119) #30	MRPL45 (ENSCDRG00005019287) #31	GPR179 (ENSCDRG00005019342) #32	SOCS7 (ENSCDRG00005019385) #33	ENSCDRG00005019433 #34	SRCIN1 (ENSCDRG00005019469) #36	ENSCDRG00005019591	ENSCDRG00005019601
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #36
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Dog	MODERN SPECIES	37	HOXB5 (ENSCAFG00845009832) #7	HOXB4 (ENSCAFG00845017264) #8	HOXB3 (ENSCAFG00845017188) #9	HOXB2 (ENSCAFG00845017142) #10	HOXB1 (ENSCAFG00845017096) #11	SKAP1 (ENSCAFG00845016959) #12	SNX11 (ENSCAFG00845016720) #13	CBX1 (ENSCAFG00845016596) #14	NFE2L1 (ENSCAFG00845016388) #16	COPZ2 (ENSCAFG00845016156) #17	CDK5RAP3 (ENSCAFG00845016051) #18	ENSCAFG00845016000	PRR15L (ENSCAFG00845015978) #19	PNPO (ENSCAFG00845015876) #20	SP2 (ENSCAFG00845015786) #21	SP6 (ENSCAFG00845015746) #22	SCRN2 (ENSCAFG00845015686) #23	LRRC46 (ENSCAFG00845015603) #24	MRPL10 (ENSCAFG00845015539) #25	OSBPL7 (ENSCAFG00845015415) #26	TBX21 (ENSCAFG00845015330) #27	TBKBP1 (ENSCAFG00845015281) #28	KPNB1 (ENSCAFG00845015226) #29	NPEPPS (ENSCAFG00845014931) #30	ENSCAFG00845014840 #31	GPR179 (ENSCAFG00845014777) #32	SOCS7 (ENSCAFG00845014686) #33	ARHGAP23 (ENSCAFG00845014513) #34	SRCIN1 (ENSCAFG00845014295) #36	EPOP (ENSCAFG00845014204) #37	MLLT6 (ENSCAFG00845014142)
Dingo	MODERN SPECIES	150	HOXB6 (ENSCAFG00020023302)	HOXB5 (ENSCAFG00020023301) #7	HOXB4 (ENSCAFG00020023297) #8	HOXB3 (ENSCAFG00020023294) #9	HOXB2 (ENSCAFG00020023293) #10	HOXB1 (ENSCAFG00020023290) #11	SKAP1 (ENSCAFG00020023287) #12	SNX11 (ENSCAFG00020023282) #13	CBX1 (ENSCAFG00020023275) #14	NFE2L1 (ENSCAFG00020023270) #16	COPZ2 (ENSCAFG00020023263) #17	CDK5RAP3 (ENSCAFG00020023258) #18	PRR15L (ENSCAFG00020023256) #19	PNPO (ENSCAFG00020023249) #20	SP2 (ENSCAFG00020023246) #21	SP6 (ENSCAFG00020023243) #22	SCRN2 (ENSCAFG00020023238) #23	LRRC46 (ENSCAFG00020023236) #24	MRPL10 (ENSCAFG00020023232) #25	OSBPL7 (ENSCAFG00020023225) #26	TBX21 (ENSCAFG00020023221) #27	TBKBP1 (ENSCAFG00020023210) #28	KPNB1 (ENSCAFG00020023205) #29	NPEPPS (ENSCAFG00020023203) #30	ENSCAFG00020023199	MRPL45 (ENSCAFG00020023186) #31	GPR179 (ENSCAFG00020023180) #32	SOCS7 (ENSCAFG00020023179) #33	ARHGAP23 (ENSCAFG00020023111) #34	ENSCAFG00020023090 #36	ENSCAFG00020023078 #36
Red fox	MODERN SPECIES	20	HOXB6 (ENSVVUG00000003359)	HOXB5 (ENSVVUG00000003354) #7	ENSVVUG00000003340 #8	HOXB3 (ENSVVUG00000003329) #9	HOXB2 (ENSVVUG00000003328) #10	HOXB1 (ENSVVUG00000003325) #11	SKAP1 (ENSVVUG00000003297) #12	SNX11 (ENSVVUG00000003276) #13	ENSVVUG00000003272 #14	NFE2L1 (ENSVVUG00000003262) #16	COPZ2 (ENSVVUG00000003249) #17	CDK5RAP3 (ENSVVUG00000003227) #18	PRR15L (ENSVVUG00000003218) #19	PNPO (ENSVVUG00000003178) #20	SP2 (ENSVVUG00000003171) #21	SP6 (ENSVVUG00000003167) #22	SCRN2 (ENSVVUG00000003154) #23	LRRC46 (ENSVVUG00000003146) #24	MRPL10 (ENSVVUG00000003141) #25	ENSVVUG00000003127 #26	TBX21 (ENSVVUG00000003106) #27	ENSVVUG00000003100 #28	KPNB1 (ENSVVUG00000003085) #29	NPEPPS (ENSVVUG00000003061) #30	MRPL45 (ENSVVUG00000003030) #31	GPR179 (ENSVVUG00000002981) #32	SOCS7 (ENSVVUG00000002941) #33	ARHGAP23 (ENSVVUG00000002610) #34	SRCIN1 (ENSVVUG00000002377) #36	EPOP (ENSVVUG00000002338) #37	MLLT6 (ENSVVUG00000002319)
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #36
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Ursus	ANCESTRAL SPECIES	67	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00390000005809.c.b	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34
American black bear	MODERN SPECIES	1414							SNX11 (ENSUAMG00000017102) #13	CBX1 (ENSUAMG00000017105) #14	NFE2L1 (ENSUAMG00000017111) #16	ENSUAMG00000017113	COPZ2 (ENSUAMG00000017115) #17	CDK5RAP3 (ENSUAMG00000017117) #18	PRR15L (ENSUAMG00000017119) #19	PNPO (ENSUAMG00000017122) #20	SP2 (ENSUAMG00000017127) #21	SP6 (ENSUAMG00000017132) #22	SCRN2 (ENSUAMG00000017135) #23	LRRC46 (ENSUAMG00000017138) #24	MRPL10 (ENSUAMG00000017142) #25
Giant Panda	MODERN SPECIES	2220																ENSAMEG00000019912 #22
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #36
American mink	MODERN SPECIES	92	HOXB4 (ENSNVIG00000006040) #8	HOXB3 (ENSNVIG00000006032) #9	HOXB2 (ENSNVIG00000006024) #10	HOXB1 (ENSNVIG00000006017) #11	ENSNVIG00000006009	SKAP1 (ENSNVIG00000005974) #12	SNX11 (ENSNVIG00000005959) #13	CBX1 (ENSNVIG00000005946) #14	NFE2L1 (ENSNVIG00000005857) #16	ENSNVIG00000005842	COPZ2 (ENSNVIG00000005837) #17	CDK5RAP3 (ENSNVIG00000005742) #18	PR15L (ENSNVIG00000005731) #19	PNPO (ENSNVIG00000005692) #20	SP2 (ENSNVIG00000005673) #21	SP6 (ENSNVIG00000005667) #22	SCRN2 (ENSNVIG00000005641) #23	LRRC46 (ENSNVIG00000005619) #24	RM10 (ENSNVIG00000005608) #25	OSBPL7 (ENSNVIG00000005460) #26	TBX21 (ENSNVIG00000005442) #27	ENSNVIG00000005426 #28	KPNB1 (ENSNVIG00000005359) #29	NPEPPS (ENSNVIG00000005313) #30	MRPL45 (ENSNVIG00000005287) #31	GPR179 (ENSNVIG00000005217) #32	SOCS7 (ENSNVIG00000005194) #33	ARHGAP23 (ENSNVIG00000005156) #34	ENSNVIG00000005143	ENSNVIG00000005132	SRCIN1 (ENSNVIG00000004933) #36
Ferret	MODERN SPECIES	270	HOXB7 (ENSMPUG00000015328)	HOXB6 (ENSMPUG00000015322)	HOXB5 (ENSMPUG00000015316) #7	HOXB4 (ENSMPUG00000015310) #8	HOXB2 (ENSMPUG00000015309) #10	HOXB1 (ENSMPUG00000015307) #11	SKAP1 (ENSMPUG00000015305) #12	SNX11 (ENSMPUG00000015303) #13	CBX1 (ENSMPUG00000015302) ##14	NFE2L1 (ENSMPUG00000015301) #16	COPZ2 (ENSMPUG00000015292) #17	CDK5RAP3 (ENSMPUG00000015291) #18	PRR15L (ENSMPUG00000020087) #19	PNPO (ENSMPUG00000015290) #20	SP2 (ENSMPUG00000015289) #21	SP6 (ENSMPUG00000020086) #22	SCRN2 (ENSMPUG00000015288) #23	LRRC46 (ENSMPUG00000015287) #24	MRPL10 (ENSMPUG00000015278) #25	OSBPL7 (ENSMPUG00000015276) #26	ENSMPUG00000015275	ENSMPUG00000015273	TBX21 (ENSMPUG00000015272) #27	TBKBP1 (ENSMPUG00000015271) #28	KPNB1 (ENSMPUG00000015220) #29	NPEPPS (ENSMPUG00000015219) #30	MRPL45 (ENSMPUG00000015218) #31	GPR179 (ENSMPUG00000015211) #32	SOCS7 (ENSMPUG00000015192) #33	ARHGAP23 (ENSMPUG00000015145) #34	SRCIN1 (ENSMPUG00000015140) #36
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000013771.p	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.i #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00860000135964
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000013771.p	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00950000185410	ENSGT00390000004405.b #17	ENSGT00940000154534.a #19	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.i.a.a #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000013771.p	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00940000154534.a #19	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.i.a.a #31	ENSGT00390000012679.i.b #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #36
leopard	MODERN SPECIES	67	HOXB5 (ENSPPRG00000000333) #7	HOXB4 (ENSPPRG00000000220) #8	HOXB3 (ENSPPRG00000022415) #9	HOXB2 (ENSPPRG00000020926) #10	HOXB1 (ENSPPRG00000017656) #11	ENSPPRG00000017115	ENSPPRG00000016613	SKAP1 (ENSPPRG00000015336) #12	SNX11 (ENSPPRG00000012061) #13	CBX1 (ENSPPRG00000009475) #14	NFE2L1 (ENSPPRG00000009101) #16	COPZ2 (ENSPPRG00000006801) #17	CDK5RAP3 (ENSPPRG00000006376) #18	PNPO (ENSPPRG00000005037) #20	SP2 (ENSPPRG00000003332) #21	SP6 (ENSPPRG00000016089) #22	SCRN2 (ENSPPRG00000002730) #23	LRRC46 (ENSPPRG00000001915) #24	MRPL10 (ENSPPRG00000001188) #25	ENSPPRG00000001011 #26	TBX21 (ENSPPRG00000000491) #27	TBKBP1 (ENSPPRG00000000101) #28	KPNB1 (ENSPPRG00000022879) #29	NPEPPS (ENSPPRG00000020677) #30	ENSPPRG00000014693 #31	GPR179 (ENSPPRG00000013909) #32	SOCS7 (ENSPPRG00000012918) #33	ARHGAP23 (ENSPPRG00000012371) #34	ENSPPRG00000011407	SRCIN1 (ENSPPRG00000011073) #36	ENSPPRG00000015449
lion	MODERN SPECIES	14	HOXB6 (ENSPLOG00000021669)	HOXB5 (ENSPLOG00000021683) #7	HOXB4 (ENSPLOG00000021697) #8	HOXB3 (ENSPLOG00000021711) #9	HOXB2 (ENSPLOG00000021733) #10	HOXB1 (ENSPLOG00000021742) #11	ENSPLOG00000021761	SKAP1 (ENSPLOG00000021790) #12	SNX11 (ENSPLOG00000021872) #13	CBX1 (ENSPLOG00000021907) #14	NFE2L1 (ENSPLOG00000021931) #16	COPZ2 (ENSPLOG00000021972) #17	CDK5RAP3 (ENSPLOG00000022033) #18	PRR15L (ENSPLOG00000022093) #19	SP2 (ENSPLOG00000022101) #21	SP6 (ENSPLOG00000022115) #22	SCRN2 (ENSPLOG00000022130) #23	LRRC46 (ENSPLOG00000005433) #24	MRPL10 (ENSPLOG00000005459) #25	OSBPL7 (ENSPLOG00000005563) #26	TBX21 (ENSPLOG00000005640) #27	TBKBP1 (ENSPLOG00000005658) #28	KPNB1 (ENSPLOG00000005771) #29	NPEPPS (ENSPLOG00000005888) #30	MRPL45 (ENSPLOG00000006010) #31	GPR179 (ENSPLOG00000006047) #32	SOCS7 (ENSPLOG00000006096) #33	ARHGAP23 (ENSPLOG00000006163) #34	SRCIN1 (ENSPLOG00000006464) #36	EPOP (ENSPLOG00000006763) #37	MLLT6 (ENSPLOG00000006793)
Cat	MODERN SPECIES	245	HOXB5 (ENSFCAG00000039068) #7	HOXB4 (ENSFCAG00000051422) #8	HOXB3 (ENSFCAG00000006408) #9	HOXB2 (ENSFCAG00000045039) #10	HOXB1 (ENSFCAG00000028151) #11	ENSFCAG00000034133	SKAP1 (ENSFCAG00000004784) #12	SNX11 (ENSFCAG00000009371) #13	CBX1 (ENSFCAG00000006056) ##14	NFE2L1 (ENSFCAG00000009369) #16	COPZ2 (ENSFCAG00000034233) #17	CDK5RAP3 (ENSFCAG00000009367) #18	PRR15L (ENSFCAG00000009366) #19	PNPO (ENSFCAG00000001300) #20	SP2 (ENSFCAG00000009365) #21	SP6 (ENSFCAG00000009363) #22	SCRN2 (ENSFCAG00000009362) #23	LRRC46 (ENSFCAG00000045119) #24	MRPL10 (ENSFCAG00000009360) #25	OSBPL7 (ENSFCAG00000009359) #26	TBX21 (ENSFCAG00000010607) #27	TBKBP1 (ENSFCAG00000010605) #28	KPNB1 (ENSFCAG00000023994) #29	NPEPPS (ENSFCAG00000027844) #30	MRPL45 (ENSFCAG00000005808) #31	GPR179 (ENSFCAG00000005812) #32	SOCS7 (ENSFCAG00000005815) #33	ARHGAP23 (ENSFCAG00000005816) #34	SRCIN1 (ENSFCAG00000005817) #36	ENSFCAG00000048827	EPOP (ENSFCAG00000036017) #37
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Equus	ANCESTRAL SPECIES		ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Donkey	MODERN SPECIES	4	HOXB7 (ENSEASG00005000556)	HOXB5 (ENSEASG00005000563) #7	HOXB6 (ENSEASG00005000560)	HOXB3 (ENSEASG00005000581) #9	HOXB2 (ENSEASG00005000585) #10	HOXB1 (ENSEASG00005000594) #11	SKAP1 (ENSEASG00005000601) #12	SNX11 (ENSEASG00005000605) #13	CBX1 (ENSEASG00005000607) #14	NFE2L1 (ENSEASG00005000634) #16	COPZ2 (ENSEASG00005000641) #17	CDK5RAP3 (ENSEASG00005000658) #18	PRR15L (ENSEASG00005000660) #19	PNPO (ENSEASG00005028794) #20	SP2 (ENSEASG00005000667) #21	SP6 (ENSEASG00005036407) #22	SCRN2 (ENSEASG00005000671) #23	LRRC46 (ENSEASG00005000676) #24	MRPL10 (ENSEASG00005027403) #25	OSBPL7 (ENSEASG00005000733) #26	TBX21 (ENSEASG00005000739) #27	TBKBP1 (ENSEASG00005000756) #28	KPNB1 (ENSEASG00005000805) #29	ENSEASG00005000896 #30	ENSEASG00005001461 #31	ENSEASG00005001474 #32	SOCS7 (ENSEASG00005001492) #33	ARHGAP23 (ENSEASG00005001497) #34	SRCIN1 (ENSEASG00005001556) #36	EPOP (ENSEASG00005029689) #37	MLLT6 (ENSEASG00005001776)
Horse	MODERN SPECIES	2	HOXB8 (ENSECAG00000034473)	HOXB5 (ENSECAG00000012439) #7	HOXB4 (ENSECAG00000028576) #8	HOXB3 (ENSECAG00000002707) #9	HOXB2 (ENSECAG00000012423) #10	HOXB1 (ENSECAG00000011628) #11	SKAP1 (ENSECAG00000010544) #12	SNX11 (ENSECAG00000008117) #13	CBX1 (ENSECAG00000008048) #14	NFE2L1 (ENSECAG00000007777) #16	COPZ2 (ENSECAG00000024471) #17	CDK5RAP3 (ENSECAG00000018688) #18	PRR15L (ENSECAG00000002658) #19	PNPO (ENSECAG00000014995) #20	SP2 (ENSECAG00000012859) #21	SP6 (ENSECAG00000012853) #22	SCRN2 (ENSECAG00000009826) #23	LRRC46 (ENSECAG00000007543) #24	OSBPL7 (ENSECAG00000019067) #26	TBX21 (ENSECAG00000018160) #27	TBKBP1 (ENSECAG00000016107) #28	KPNB1 (ENSECAG00000014560) #29	NPEPPS (ENSECAG00000007392) #30	MRPL45 (ENSECAG00000000590) #31	GPR179 (ENSECAG00000021843) #32	SOCS7 (ENSECAG00000021699) #33	ARHGAP23 (ENSECAG00000031942) #34	SRCIN1 (ENSECAG00000014219) #36	EPOP (ENSECAG00000036519) #37	MLLT6 (ENSECAG00000012082)	CISD3 (ENSECAG00000011982)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00980000199681	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d.b #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Greater horseshoe bat	MODERN SPECIES	13	HOXB5 (ENSRFEG00010021836) #7	HOXB4 (ENSRFEG00010021844) #8	ENSRFEG00010021849	HOXB3 (ENSRFEG00010021853) #9	HOXB2 (ENSRFEG00010021859) #10	HOXB1 (ENSRFEG00010021864) #11	SKAP1 (ENSRFEG00010021866) #12	SNX11 (ENSRFEG00010021879) #13	CBX1 (ENSRFEG00010021893) #14	NFE2L1 (ENSRFEG00010021900) #16	COPZ2 (ENSRFEG00010021918) #17	CDK5RAP3 (ENSRFEG00010021928) #18	PRR15L (ENSRFEG00010021936) #19	PNPO (ENSRFEG00010021942) #20	SP2 (ENSRFEG00010021950) #21	SP6 (ENSRFEG00010021957) #22	SCRN2 (ENSRFEG00010021961) #23	LRRC46 (ENSRFEG00010008197) #24	MRPL10 (ENSRFEG00010008230) #25	OSBPL7 (ENSRFEG00010008272) #26	TBX21 (ENSRFEG00010008382) #27	TBKBP1 (ENSRFEG00010008412) #28	KPNB1 (ENSRFEG00010008460) #29	NPEPPS (ENSRFEG00010008553) #30	MRPL45 (ENSRFEG00010008623) #31	GPR179 (ENSRFEG00010008688) #32	SOCS7 (ENSRFEG00010008940) #33	ARHGAP23 (ENSRFEG00010009067) #34	SRCIN1 (ENSRFEG00010009277) #36	EPOP (ENSRFEG00010009672) #37	MLLT6 (ENSRFEG00010009688)
Megabat	MODERN SPECIES	2332												COPZ2 (ENSPVAG00000004259) #17	CDK5RAP3 (ENSPVAG00000004258) #18	PNPO (ENSPVAG00000004256) #20	SP2 (ENSPVAG00000004255) #21	SP6 (ENSPVAG00000004254) #22	SCRN2 (ENSPVAG00000004253) #23	LRRC46 (ENSPVAG00000004252) #24	MRPL10 (ENSPVAG00000004251) #25	OSBPL7 (ENSPVAG00000004250) #26
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Elephant	MODERN SPECIES	310	HOXB4 (ENSLAFG00000013588) #8	HOXB3 (ENSLAFG00000030335) #9	ENSLAFG00000030505	HOXB2 (ENSLAFG00000030161) #10	ENSLAFG00000031610 #11	SKAP1 (ENSLAFG00000018530) #12	SNX11 (ENSLAFG00000018529) #13	CBX1 (ENSLAFG00000018526) #14	NFE2L1 (ENSLAFG00000018523) #16	ENSLAFG00000015209 #17	ENSLAFG00000030284	CDK5RAP3 (ENSLAFG00000000339) #18	PRR15L (ENSLAFG00000015553) #19	PNPO (ENSLAFG00000015550) #20	SP2 (ENSLAFG00000021817) #21	SP6 (ENSLAFG00000010701) #22	SCRN2 (ENSLAFG00000025964) #23	LRRC46 (ENSLAFG00000006826) #24	MRPL10 (ENSLAFG00000028127) #25	OSBPL7 (ENSLAFG00000006819) #26	TBX21 (ENSLAFG00000028463) #27	TBKBP1 (ENSLAFG00000001330) #28	KPNB1 (ENSLAFG00000001328) #29	NPEPPS (ENSLAFG00000001325) #30	MRPL45 (ENSLAFG00000014050) #31	ENSLAFG00000015267 #32	SOCS7 (ENSLAFG00000015279) #33	ARHGAP23 (ENSLAFG00000028622) #34	SRCIN1 (ENSLAFG00000012974) #36	EPOP (ENSLAFG00000023127) #37	MLLT6 (ENSLAFG00000022685)
Tenrec	MODERN SPECIES	7940															PNPO (ENSETEG00000017018) #20	SP6 (ENSETEG00000017017) #22
Xenarthra	ANCESTRAL SPECIES	258							ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27
Armadillo	MODERN SPECIES	825							SKAP1 (ENSDNOG00000039133) #12	SNX11 (ENSDNOG00000032877) #13	CBX1 (ENSDNOG00000040249) #14	NFE2L1 (ENSDNOG00000047006) #16	COPZ2 (ENSDNOG00000037475) #17	CDK5RAP3 (ENSDNOG00000030779) #18	PRR15L (ENSDNOG00000008323) #19	PNPO (ENSDNOG00000032160) #20	SP2 (ENSDNOG00000013944) #21	SP6 (ENSDNOG00000042665) #22	SCRN2 (ENSDNOG00000034719) #23	LRRC46 (ENSDNOG00000047964) #24	MRPL10 (ENSDNOG00000024176) #25	OSBPL7 (ENSDNOG00000033308) #26	ENSDNOG00000045438 #27
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Opossum	MODERN SPECIES	1	HOXB5 (ENSMODG00000012338) #7	HOXB4 (ENSMODG00000042083) #8	HOXB3 (ENSMODG00000012344) #9	HOXB2 (ENSMODG00000012347) #10	HOXB1 (ENSMODG00000046816) #11	SKAP1 (ENSMODG00000012360) #12	SNX11 (ENSMODG00000051179) #13	CBX1 (ENSMODG00000012368) #14	NFE2L1 (ENSMODG00000012375) #16	COPZ2 (ENSMODG00000012424) #17	CDK5RAP3 (ENSMODG00000012439) #18	PRR15L (ENSMODG00000024090) #19	PNPO (ENSMODG00000012446) #20	ENSMODG00000050066	SP2 (ENSMODG00000012452) #21	SP6 (ENSMODG00000012454) #22	SCRN2 (ENSMODG00000012467) #23	LRRC46 (ENSMODG00000012473) #24	MRPL10 (ENSMODG00000038269) #25	OSBPL7 (ENSMODG00000012518) #26	ENSMODG00000012526 #27	ENSMODG00000039000 #28	KPNB1 (ENSMODG00000012505) #29	NPEPPS (ENSMODG00000012557) #30	MRPL45 (ENSMODG00000012560) #31	GPR179 (ENSMODG00000012564) #32	SOCS7 (ENSMODG00000012566) #33	ARHGAP23 (ENSMODG00000012570) #34	SRCIN1 (ENSMODG00000012577) #36	ENSMODG00000012582 #37	MLLT6 (ENSMODG00000012598)
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.e #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Common wonbat	MODERN SPECIES	1037	HOXB5 (ENSVURG00010007599) #7	HOXB4 (ENSVURG00010007589) #8	HOXB3 (ENSVURG00010007587) #9	HOXB2 (ENSVURG00010007579) #10	HOXB1 (ENSVURG00010007572) #11	SKAP1 (ENSVURG00010007559) #12	SNX11 (ENSVURG00010007541) #13	CBX1 (ENSVURG00010007537) #14	NFE2L1 (ENSVURG00010007465) #16	COPZ2 (ENSVURG00010007430) #17	CDK5RAP3 (ENSVURG00010007403) #18	PRR15L (ENSVURG00010007394) #19	PNPO (ENSVURG00010007376) #20	ENSVURG00010007365	SP2 (ENSVURG00010007347) #21	SP6 (ENSVURG00010007336) #22	SCRN2 (ENSVURG00010007326) #23	LRRC46 (ENSVURG00010007320) #24	MRPL10 (ENSVURG00010007313) #25	OSBPL7 (ENSVURG00010007175) #26	TBX21 (ENSVURG00010007151) #27	TBKBP1 (ENSVURG00010007134) #28	KPNB1 (ENSVURG00010007118) #29	ENSVURG00010007112 #30	MRPL45 (ENSVURG00010007098) #31	ENSVURG00010007072 #32	SOCS7 (ENSVURG00010006912) #33	ARHGAP23 (ENSVURG00010006847) #34	SRCIN1 (ENSVURG00010006777) #36	EPOP (ENSVURG00010006761) #37	MLLT6 (ENSVURG00010006746)
koala	MODERN SPECIES	67	HOXB5 (ENSPCIG00000031080) #7	HOXB4 (ENSPCIG00000000195) #8	HOXB3 (ENSPCIG00000000217) #9	HOXB2 (ENSPCIG00000000295) #10	HOXB1 (ENSPCIG00000033449) #11	SKAP1 (ENSPCIG00000000339) #12	SNX11 (ENSPCIG00000000612) #13	CBX1 (ENSPCIG00000000630) #14	NFE2L1 (ENSPCIG00000000720) #16	COPZ2 (ENSPCIG00000000757) #17	CDK5RAP3 (ENSPCIG00000000798) #18	PRR15L (ENSPCIG00000000814) #19	PNPO (ENSPCIG00000000828) #20	ENSPCIG00000000834	SP2 (ENSPCIG00000000843) #21	SP6 (ENSPCIG00000000873) #22	SCRN2 (ENSPCIG00000000883) #23	LRRC46 (ENSPCIG00000000900) #24	MRPL10 (ENSPCIG00000031062) #25	OSBPL7 (ENSPCIG00000000940) #26	ENSPCIG00000000999 #27	TBKBP1 (ENSPCIG00000001017) #28	KPNB1 (ENSPCIG00000001034) #29	NPEPPS (ENSPCIG00000009620) #30	MRPL45 (ENSPCIG00000001069) #31	ENSPCIG00000001092 #32	SOCS7 (ENSPCIG00000001102) #33	ARHGAP23 (ENSPCIG00000001149) #34	SRCIN1 (ENSPCIG00000001224) #36	EPOP (ENSPCIG00000001334) #37	MLLT6 (ENSPCIG00000001404)
Wallaby	MODERN SPECIES	9257																SP6 (ENSMEUG00000007329) #22	SCRN2 (ENSMEUG00000007319) #23	ENSMEUG00000007300 #24	ENSMEUG00000007293 #25	OSBPL7 (ENSMEUG00000007269) #26
Tasmanian devil	MODERN SPECIES	3	HOXB7 (ENSSHAG00000022783)	HOXB5 (ENSSHAG00000024100) #7	HOXB3 (ENSSHAG00000031207) #9	HOXB2 (ENSSHAG00000012232) #10	HOXB1 (ENSSHAG00000012150) #11	ENSSHAG00000029678	SNX11 (ENSSHAG00000029423) #13	CBX1 (ENSSHAG00000023789) #14	NFE2L1 (ENSSHAG00000026195) #16	COPZ2 (ENSSHAG00000023675) #17	CDK5RAP3 (ENSSHAG00000006548) #18	PRR15L (ENSSHAG00000025985) #19	PNPO (ENSSHAG00000023730) #20	ENSSHAG00000005930	SP2 (ENSSHAG00000005633) #21	SP6 (ENSSHAG00000030597) #22	SCRN2 (ENSSHAG00000003868) #23	LRRC46 (ENSSHAG00000003740) #24	MRPL10 (ENSSHAG00000030224) #25	OSBPL7 (ENSSHAG00000003116) #26	ENSSHAG00000028042 #27	ENSSHAG00000018315 #27	TBKBP1 (ENSSHAG00000021573) #28	ENSSHAG00000018214 #29	ENSSHAG00000018038 #30	ENSSHAG00000025003 #31	ENSSHAG00000017950 #32	SOCS7 (ENSSHAG00000031561) #33	ARHGAP23 (ENSSHAG00000017726) #34	SRCIN1 (ENSSHAG00000017633) #36	ENSSHAG00000025033
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Common wall lizard	MODERN SPECIES	4	HOXB5 (ENSPMRG00000013170) #7	HOXB4 (ENSPMRG00000013173) #8	HOXB3 (ENSPMRG00000013178) #9	HOXB2 (ENSPMRG00000013183) #10	HOXB1 (ENSPMRG00000013189) #11	ENSPMRG00000013192	CBX1 (ENSPMRG00000013202) ##14	SNX11 (ENSPMRG00000013221) #13	NFE2L1 (ENSPMRG00000013246) #16	ENSPMRG00000013258	COPZ2 (ENSPMRG00000013275) #17	CDK5RAP3 (ENSPMRG00000013294) #18	PNPO (ENSPMRG00000013310) #20	ENSPMRG00000013316	SP2 (ENSPMRG00000013320) #21	SP6 (ENSPMRG00000013329) #22	SCRN2 (ENSPMRG00000013336) #23	LRRC46 (ENSPMRG00000013345) #24	OSBPL7 (ENSPMRG00000013357) #26	TBX21 (ENSPMRG00000013375) #27	TBKBP1 (ENSPMRG00000013381) #28	KPNB1 (ENSPMRG00000013395) #29	NPEPPS (ENSPMRG00000013437) #30	MRPL45 (ENSPMRG00000013492) #31	GPR179 (ENSPMRG00000013502) #32	SOCS7 (ENSPMRG00000015866) #33	ARHGAP23 (ENSPMRG00000015886) #34	SRCIN1 (ENSPMRG00000015906) #36	ENSPMRG00000015937	ENSPMRG00000015948	MLLT6 (ENSPMRG00000015968)
Argentine black and white tegu	MODERN SPECIES	32	HOXB5 (ENSSMRG00000021839) #7	HOXB4 (ENSSMRG00000021841) #8	HOXB3 (ENSSMRG00000021842) #9	HOXB2 (ENSSMRG00000021844) #10	HOXB1 (ENSSMRG00000021845) #11	SKAP1 (ENSSMRG00000021847) #12	SNX11 (ENSSMRG00000021848) #13	CBX1 (ENSSMRG00000021849) ##14	NFE2L1 (ENSSMRG00000021850) #16	COPZ2 (ENSSMRG00000021851) #17	CDK5RAP3 (ENSSMRG00000021852) #18	PRR15L (ENSSMRG00000021853) #19	PNPO (ENSSMRG00000021854) #20	ENSSMRG00000021855	SP2 (ENSSMRG00000021856) #21	SP6 (ENSSMRG00000021857) #22	SCRN2 (ENSSMRG00000021858) #23	LRRC46 (ENSSMRG00000000025) #24	MRPL10 (ENSSMRG00000000096) #25	OSBPL7 (ENSSMRG00000000139) #26	TBX21 (ENSSMRG00000000195) #27	TBKBP1 (ENSSMRG00000000217) #28	KPNB1 (ENSSMRG00000000247) #29	NPEPPS (ENSSMRG00000000307) #30	MRPL45 (ENSSMRG00000000340) #31	GPR179 (ENSSMRG00000000359) #32	SOCS7 (ENSSMRG00000000374) #33	ENSSMRG00000000409	ARHGAP23 (ENSSMRG00000000448) #34	SRCIN1 (ENSSMRG00000000664) #36	ENSSMRG00000002315 #37
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.e #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776.a #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00960000189742
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439.c #26	ENSGT00940000160397 #27	ENSGT00940000153704.B.e #28	ENSGT00940000153704.B.f #28	ENSGT00550000074898.e #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776.a #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.c.a ##14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439.c #26	ENSGT00940000160397 #27	ENSGT00940000153704.B.e #28	ENSGT00940000153704.B.f #28	ENSGT00550000074898.e #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776.a #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00960000189742
Eastern brown snake	MODERN SPECIES	49	HOXB5 (ENSPTXG00000013900) #7	HOXB4 (ENSPTXG00000013902) #8	HOXB3 (ENSPTXG00000013904) #9	HOXB2 (ENSPTXG00000013905) #10	HOXB1 (ENSPTXG00000013906) #11	ENSPTXG00000013907	SKAP1 (ENSPTXG00000013908) #12	SNX11 (ENSPTXG00000013909) #13	ENSPTXG00000013911 ##14	NFE2L1 (ENSPTXG00000013912) #16	COPZ2 (ENSPTXG00000013913) #17	CDK5RAP3 (ENSPTXG00000013914) #18	PRR15L (ENSPTXG00000013915) #19	PNPO (ENSPTXG00000013916) #20	ENSPTXG00000013917 #21	SP6 (ENSPTXG00000013918) #22	SCRN2 (ENSPTXG00000013919) #23	ENSPTXG00000013920	MRPL10 (ENSPTXG00000013921) #25	OSBPL7 (ENSPTXG00000013922) #26	TBX21 (ENSPTXG00000013928) #27	ENSPTXG00000013929	ENSPTXG00000013930 #28	ENSPTXG00000013931 #29	NPEPPS (ENSPTXG00000013932) #30	MRPL45 (ENSPTXG00000013933) #31	ENSPTXG00000013934 #32	SOCS7 (ENSPTXG00000013935) #33	ARHGAP23 (ENSPTXG00000013936) #34	SRCIN1 (ENSPTXG00000013940) #36	ENSPTXG00000013956
Mainland tiger snake	MODERN SPECIES	29	HOXB6 (ENSNSUG00000007444)	HOXB5 (ENSNSUG00000007445) #7	HOXB4 (ENSNSUG00000007447) #8	HOXB3 (ENSNSUG00000007448) #9	HOXB2 (ENSNSUG00000007449) #10	HOXB1 (ENSNSUG00000007450) #11	SKAP1 (ENSNSUG00000007452) #12	SNX11 (ENSNSUG00000007454) #13	ENSNSUG00000007455 ##14	NFE2L1 (ENSNSUG00000007456) #16	COPZ2 (ENSNSUG00000007459) #17	CDK5RAP3 (ENSNSUG00000007503) #18	PRR15L (ENSNSUG00000007504) #19	PNPO (ENSNSUG00000007506) #20	ENSNSUG00000007509 #21	SP6 (ENSNSUG00000007513) #22	SCRN2 (ENSNSUG00000007517) #23	ENSNSUG00000007519	MRPL10 (ENSNSUG00000007520) #25	OSBPL7 (ENSNSUG00000007592) #26	TBX21 (ENSNSUG00000007594) #27	TBKBP1 (ENSNSUG00000007595) #28	ENSNSUG00000007596 #29	NPEPPS (ENSNSUG00000008148) #30	MRPL45 (ENSNSUG00000008681) #31	ENSNSUG00000008682 #32	SOCS7 (ENSNSUG00000008683) #33	SRCIN1 (ENSNSUG00000008709) #36	ENSNSUG00000008710	MLLT6 (ENSNSUG00000008711)	ENSNSUG00000008712
Blue-lipped sea krait	MODERN SPECIES	6899																SP6 (ENSLLTG00000015722) #22
Indian cobra	MODERN SPECIES	337	HOXB7 (ENSNNAG00000009344)	HOXB6 (ENSNNAG00000009328)	HOXB5 (ENSNNAG00000009308) #7	HOXB4 (ENSNNAG00000009277) #8	HOXB3 (ENSNNAG00000009256) #9	HOXB2 (ENSNNAG00000009232) #10	HOXB1 (ENSNNAG00000009145) #11	SNX11 (ENSNNAG00000009074) #13	ENSNNAG00000009045 ##14	NFE2L1 (ENSNNAG00000009022) #16	COPZ2 (ENSNNAG00000008924) #17	CDK5RAP3 (ENSNNAG00000008878) #18	PRR15L (ENSNNAG00000008859) #19	PNPO (ENSNNAG00000008837) #20	ENSNNAG00000008826 #21	SP6 (ENSNNAG00000008820) #22	SCRN2 (ENSNNAG00000008774) #23	ENSNNAG00000008753	MRPL10 (ENSNNAG00000008730) #25	OSBPL7 (ENSNNAG00000008187) #26	TBX21 (ENSNNAG00000008104) #27	TBKBP1 (ENSNNAG00000008059) #28	ENSNNAG00000007982 #29	NPEPPS (ENSNNAG00000007364) #30	MRPL45 (ENSNNAG00000007294) #31	ENSNNAG00000007277 #32	SOCS7 (ENSNNAG00000007201) #33	ARHGAP23 (ENSNNAG00000007152) #34	ENSNNAG00000007142	SRCIN1 (ENSNNAG00000007080) #36	ENSNNAG00000007071
Lizard	MODERN SPECIES	5	HOXB4 (ENSACAG00000006499) #8	HOXB3 (ENSACAG00000006508) #9	HOXB2 (ENSACAG00000006521) #10	HOXB1 (ENSACAG00000035547) #11	ENSACAG00000041448	ENSACAG00000034966	SKAP1 (ENSACAG00000006534) #12	SNX11 (ENSACAG00000006556) #13	ENSACAG00000006594 ##14	NFE2L1 (ENSACAG00000006615) #16	COPZ2 (ENSACAG00000006651) #17	CDK5RAP3 (ENSACAG00000006686) #18	PRR15L (ENSACAG00000006762) #19	PNPO (ENSACAG00000006764) #20	SP2 (ENSACAG00000006793) #21	SP6 (ENSACAG00000006831) #22	SCRN2 (ENSACAG00000006837) #23	LRRC46 (ENSACAG00000006887) #24	MRPL10 (ENSACAG00000006889) #25	OSBPL7 (ENSACAG00000006906) #26	TBX21 (ENSACAG00000007044) #27	TBKBP1 (ENSACAG00000007079) #28	KPNB1 (ENSACAG00000007097) #29	NPEPPS (ENSACAG00000007242) #30	MRPL45 (ENSACAG00000007343) #31	GPR179 (ENSACAG00000043732) #32	SOCS7 (ENSACAG00000032737) #33	ARHGAP23 (ENSACAG00000007448) #34	SRCIN1 (ENSACAG00000007498) #36	ENSACAG00000017973 #37	MLLT6 (ENSACAG00000017970)
tuatara	MODERN SPECIES	1705						ENSSPUG00000017491	SKAP1 (ENSSPUG00000017498) #12	SNX11 (ENSSPUG00000017511) #13	CBX1 (ENSSPUG00000017523) ##14	NFE2L1 (ENSSPUG00000017549) #16	COPZ2 (ENSSPUG00000017576) #17	CDK5RAP3 (ENSSPUG00000017587) #18	PRR15L (ENSSPUG00000017603) #19	ENSSPUG00000017635	SP2 (ENSSPUG00000017648) #21	SP6 (ENSSPUG00000017659) #22	SCRN2 (ENSSPUG00000017669) #23	LRRC46 (ENSSPUG00000017689) #24	MRPL10 (ENSSPUG00000017695) #25	OSBPL7 (ENSSPUG00000017709) #26	TBX21 (ENSSPUG00000017746) #27	TBKBP1 (ENSSPUG00000017792) #28	KPNB1 (ENSSPUG00000017799) #29	NPEPPS (ENSSPUG00000017816) #30	MRPL45 (ENSSPUG00000017848) #31	ENSSPUG00000017870 #32	SOCS7 (ENSSPUG00000017876) #33	ARHGAP23 (ENSSPUG00000017887) #34	ENSSPUG00000017899	SRCIN1 (ENSSPUG00000017913) #36	MLLT6 (ENSSPUG00000017943)
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Three-toed box turtle	MODERN SPECIES	91	HOXB5 (ENSTMTG00000007666) #7	HOXB4 (ENSTMTG00000007660) #8	HOXB3 (ENSTMTG00000007653) #9	HOXB2 (ENSTMTG00000007640) #10	HOXB1 (ENSTMTG00000007622) #11	SKAP1 (ENSTMTG00000007393) #12	SNX11 (ENSTMTG00000007347) #13	CBX1 (ENSTMTG00000007333) #14	NFE2L1 (ENSTMTG00000007320) #16	COPZ2 (ENSTMTG00000007271) #17	CDK5RAP3 (ENSTMTG00000007229) #18	PRR15L (ENSTMTG00000007217) #19	PNPO (ENSTMTG00000007206) #20	ENSTMTG00000007188	SP2 (ENSTMTG00000007171) #21	ENSTMTG00000007161 #22	SCRN2 (ENSTMTG00000007144) #23	ENSTMTG00000007129	MRPL10 (ENSTMTG00000007114) #25	ENSTMTG00000007063 #26	ENSTMTG00000007028 #26	TBX21 (ENSTMTG00000007000) #27	TBKBP1 (ENSTMTG00000006974) #28	KPNB1 (ENSTMTG00000006930) #29	NPEPPS (ENSTMTG00000006865) #30	MRPL45 (ENSTMTG00000006838) #31	ENSTMTG00000006740 #32	SOCS7 (ENSTMTG00000006649) #33	ARHGAP23 (ENSTMTG00000006551) #34	SRCIN1 (ENSTMTG00000006192) #36	ENSTMTG00000006135 #37
painted turtle	MODERN SPECIES	2394	HOXB6 (ENSCPBG00000027348)	HOXB5 (ENSCPBG00000027349) #7	ENSCPBG00000027351	HOXB2 (ENSCPBG00000027352) #10	HOXB1 (ENSCPBG00000027354) #11	SKAP1 (ENSCPBG00000027357) #12	SNX11 (ENSCPBG00000027362) #13	CBX1 (ENSCPBG00000027366) #14	NFE2L1 (ENSCPBG00000027369) #16	COPZ2 (ENSCPBG00000027373) #17	CDK5RAP3 (ENSCPBG00000027376) #18	PRR15L (ENSCPBG00000027380) #19	PNPO (ENSCPBG00000027382) #20	ENSCPBG00000027388	SP2 (ENSCPBG00000027391) #21	SP6 (ENSCPBG00000027395) #22	SCRN2 (ENSCPBG00000027397) #23	LRRC46 (ENSCPBG00000027399) #24	MRPL10 (ENSCPBG00000027401) #25	OSBPL7 (ENSCPBG00000027405) #26	TBX21 (ENSCPBG00000027414) #27	ENSCPBG00000027421 #28	KPNB1 (ENSCPBG00000027423) #29	NPEPPS (ENSCPBG00000027428) #30	MRPL45 (ENSCPBG00000027431) #31	ENSCPBG00000027434 #32	ARHGAP23 (ENSCPBG00000027456) #34	SRCIN1 (ENSCPBG00000027469) #36	ENSCPBG00000027476	MLLT6 (ENSCPBG00000027478)	ENSCPBG00000027483
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Abingdon island giant tortoise	MODERN SPECIES	1609	HOXB5 (ENSCABG00000002737) #7	HOXB4 (ENSCABG00000002736) #8	HOXB3 (ENSCABG00000002733) #9	HOXB2 (ENSCABG00000002731) #10	HOXB1 (ENSCABG00000002728) #11	SKAP1 (ENSCABG00000002721) #12	SNX11 (ENSCABG00000002717) #13	CBX1 (ENSCABG00000002713) #14	NFE2L1 (ENSCABG00000002708) #16	COPZ2 (ENSCABG00000002681) #17	CDK5RAP3 (ENSCABG00000002680) #18	PRR15L (ENSCABG00000002679) #19	PNPO (ENSCABG00000002678) #20	ENSCABG00000002677	SP2 (ENSCABG00000002675) #21	SP6 (ENSCABG00000002674) #22	SCRN2 (ENSCABG00000002671) #23	ENSCABG00000002668	MRPL10 (ENSCABG00000002666) #25	OSBPL7 (ENSCABG00000002659) #26	TBX21 (ENSCABG00000002657) #27	TBKBP1 (ENSCABG00000002655) #28	KPNB1 (ENSCABG00000002648) #29	NPEPPS (ENSCABG00000002641) #30	MRPL45 (ENSCABG00000002638) #31	ENSCABG00000002635 #32	SOCS7 (ENSCABG00000002631) #33	ARHGAP23 (ENSCABG00000002627) #34	SRCIN1 (ENSCABG00000002622) #36	ENSCABG00000002620 #37	MLLT6 (ENSCABG00000002618)
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Australian saltwater crocodile	MODERN SPECIES	60	HOXB5 (ENSCPRG00005007222) #7	HOXB4 (ENSCPRG00005007218) #8	HOXB3 (ENSCPRG00005007217) #9	HOXB2 (ENSCPRG00005007216) #10	HOXB1 (ENSCPRG00005007211) #11	SKAP1 (ENSCPRG00005007201) #12	SNX11 (ENSCPRG00005007185) #13	CBX1 (ENSCPRG00005007181) #14	NFE2L1 (ENSCPRG00005007178) #16	COPZ2 (ENSCPRG00005007172) #17	CDK5RAP3 (ENSCPRG00005007163) #18	PRR15L (ENSCPRG00005007160) #19	PNPO (ENSCPRG00005007155) #20	ENSCPRG00005007151	SP2 (ENSCPRG00005007150) #21	SP6 (ENSCPRG00005007147) #22	SCRN2 (ENSCPRG00005007138) #23	LRRC46 (ENSCPRG00005007132) #24	MRPL10 (ENSCPRG00005007129) #25	OSBPL7 (ENSCPRG00005007117) #26	TBX21 (ENSCPRG00005007057) #27	TBKBP1 (ENSCPRG00005007027) #28	KPNB1 (ENSCPRG00005006998) #29
Aves	ANCESTRAL SPECIES	26	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000158572	ENSGT00940000165589
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b.c #34	ENSGT00940000157961.C #36	ENSGT00940000158572	ENSGT00940000165589
Passeriformes_g	ANCESTRAL SPECIES	50	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b.c #34	ENSGT00940000157961.C #36	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730
Passeroidea	ANCESTRAL SPECIES	49	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b.d #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572	ENSGT00940000165589
Zebra finch	MODERN SPECIES	20	ENSTGUG00000026217	HOXB9 (ENSTGUG00000003448)	HOXB8 (ENSTGUG00000003441)	ENSTGUG00000020107	HOXB6 (ENSTGUG00000003435)	HOXB5 (ENSTGUG00000003430) #7	ENSTGUG00000021689	HOXB2 (ENSTGUG00000022054) #10	HOXB1 (ENSTGUG00000025694) #11	SKAP1 (ENSTGUG00000029482) #12	ENSTGUG00000026594 #13	NFE2L1 (ENSTGUG00000014715) #16	CDK5RAP3 (ENSTGUG00000016909) #18	PNPO (ENSTGUG00000027633) #20	SP2 (ENSTGUG00000024446) #21	SP6 (ENSTGUG00000027194) #22	SCRN2 (ENSTGUG00000021900) #23	ENSTGUG00000029748	ENSTGUG00000028791 #26	ENSTGUG00000021758 #26	ENSTGUG00000021058 #27	TBKBP1 (ENSTGUG00000026971) #28	KPNB1 (ENSTGUG00000003387) #29	NPEPPS (ENSTGUG00000003339) #30	MRPL45 (ENSTGUG00000003330) #31	GPR179 (ENSTGUG00000020188) #32	SOCS7 (ENSTGUG00000003337) #33	ENSTGUG00000028017	ARHGAP23 (ENSTGUG00000023504) #34	SRCIN1 (ENSTGUG00000017145) #36	ENSTGUG00000022944
Great tit	MODERN SPECIES	304															SP2 (ENSPMJG00000005848) #21	SP6 (ENSPMJG00000005847) #22	SCRN2 (ENSPMJG00000005843) #23	ENSPMJG00000005834 #24	ENSPMJG00000005831	ENSPMJG00000005821 #26	ENSPMJG00000005817 #26	ENSPMJG00000005815	TBKBP1 (ENSPMJG00000005810) #28
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Kakapo	MODERN SPECIES	12	SMARCD2 (ENSSHBG00005010280)	PSMC5 (ENSSHBG00005010198)	FTSJ3 (ENSSHBG00005010153)	ENSSHBG00005010109	ENSSHBG00005010082	DLX3 (ENSSHBG00005010048)	ENSSHBG00005010020	ENSSHBG00005009990	ENSSHBG00005009969	ENSSHBG00005009950 #13	ENSSHBG00005009936 ##16	CDK5RAP3 (ENSSHBG00005009863) #18	PRR15L (ENSSHBG00005009820) #19	PNPO (ENSSHBG00005009805) #20	SP2 (ENSSHBG00005009786) #21	SP6 (ENSSHBG00005009774) #22	SCRN2 (ENSSHBG00005009758) #23	ENSSHBG00005009744 #24	MRPL10 (ENSSHBG00005009737) #25	OSBPL7 (ENSSHBG00005009643) #26	TBX21 (ENSSHBG00005009578) #27	ENSSHBG00005009566 #28	ENSSHBG00005009552 #28	KPNB1 (ENSSHBG00005009532) #29	NPEPPS (ENSSHBG00005009482) #30	MRPL45 (ENSSHBG00005009448) #31	GPR179 (ENSSHBG00005009413) #32	SOCS7 (ENSSHBG00005009381) #33	ARHGAP23 (ENSSHBG00005009300) #34	SRCIN1 (ENSSHBG00005009216) #36	ENSSHBG00005009171 #37
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Anatidae	ANCESTRAL SPECIES	70	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26
Pink-footed goose	MODERN SPECIES	305	HOXB7 (ENSABRG00000000473)	HOXB6 (ENSABRG00000000480)	HOXB5 (ENSABRG00000000485) #7	HOXB4 (ENSABRG00000000495) #8	HOXB3 (ENSABRG00000000506) #9	HOXB2 (ENSABRG00000000517) #10	HOXB1 (ENSABRG00000000522) #11	SKAP1 (ENSABRG00000000558) #12	SNX11 (ENSABRG00000000576) #13	CBX1 (ENSABRG00000000584) #14	NFE2L1 (ENSABRG00000000594) #16	ENSABRG00000000606 #17	CDK5RAP3 (ENSABRG00000000636) #18	PNPO (ENSABRG00000000676) #20	SP2 (ENSABRG00000001034) #21	SP6 (ENSABRG00000001100) #22	SCRN2 (ENSABRG00000001107) #23	LRRC46 (ENSABRG00000001138) #24	MRPL10 (ENSABRG00000001154) #25	ENSABRG00000001168 #26
Duck	MODERN SPECIES	2057																SP6 (ENSAPLG00000020678) #22
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #36	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152.d #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.c.a #30	ENSGT00940000155246.c.b #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157961.C #36	ENSGT00940000158572	ENSGT00940000165589
Chicken	MODERN SPECIES	19	HOXB7 (ENSGALG00010023381)	HOXB6 (ENSGALG00010023383)	HOXB5 (ENSGALG00010023394) #7	HOXB4 (ENSGALG00010023415) #8	HOXB3 (ENSGALG00010023428) #9	HOXB2 (ENSGALG00010023438) #10	HOXB1 (ENSGALG00010023454) #11	SKAP1 (ENSGALG00010021479) #12	SNX11 (ENSGALG00010021554) #13	CBX1 (ENSGALG00010021565) #14	NFE2L1 (ENSGALG00010021583) #16	CDK5RAP3 (ENSGALG00010023706) #18	PRR15L (ENSGALG00010023722) #19	PNPO (ENSGALG00010023726) #20	SP2 (ENSGALG00010023730) #21	SP6 (ENSGALG00010023742) #22	SCRN2 (ENSGALG00010023770) #23	LRRC46 (ENSGALG00010023784) #24	MRPL10 (ENSGALG00010023807) #25	OSBPL7 (ENSGALG00010023841) #26	TBX21 (ENSGALG00010023883) #27	TBKBP1 (ENSGALG00010023903) #28	KPNB1 (ENSGALG00010023927) #29	ENSGALG00010024010 #30	ENSGALG00010021150 #30	MRPL45 (ENSGALG00010024039) #31	ENSGALG00010024047 #32	SOCS7 (ENSGALG00010024122) #33	SRCIN1 (ENSGALG00010024162) #36	MLLT6 (ENSGALG00010022085)	CISD3 (ENSGALG00010022101)
Japanese quail	MODERN SPECIES	19	HOXB8 (ENSCJPG00005019366)	HOXB7 (ENSCJPG00005019367)	HOXB6 (ENSCJPG00005019368)	HOXB5 (ENSCJPG00005019369) #7	HOXB4 (ENSCJPG00005019371) #8	HOXB3 (ENSCJPG00005019372) #9	HOXB2 (ENSCJPG00005019373) #10	HOXB1 (ENSCJPG00005019374) #11	SKAP1 (ENSCJPG00005019375) #12	SNX11 (ENSCJPG00005019376) #13	CBX1 (ENSCJPG00005019377) #14	NFE2L1 (ENSCJPG00005019378) #16	CDK5RAP3 (ENSCJPG00005019379) #18	PRR15L (ENSCJPG00005019386) #19	SP2 (ENSCJPG00005019387) #21	SP6 (ENSCJPG00005019388) #22	SCRN2 (ENSCJPG00005019389) #23	LRRC46 (ENSCJPG00005019390) #24	MRPL10 (ENSCJPG00005019391) #25	TBX21 (ENSCJPG00005019401) #27	KPNB1 (ENSCJPG00005000892) #29	NPEPPS (ENSCJPG00005000955) #30	MRPL45 (ENSCJPG00005000986) #31	ENSCJPG00005001001 #32	SOCS7 (ENSCJPG00005001011) #33	ARHGAP23 (ENSCJPG00005001122) #34	SRCIN1 (ENSCJPG00005002304) #36	ENSCJPG00005002305	ENSCJPG00005002306 #37	MLLT6 (ENSCJPG00005002307)	PCGF2 (ENSCJPG00005002309)
Anura	ANCESTRAL SPECIES	15	ENSGT00940000158354 #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503 #11	ENSGT00390000017856.b #12	ENSGT00940000160113 #13	ENSGT00940000154152 #14	ENSGT00950000182892.a.b.a.a #16	ENSGT00390000004405.b #17	ENSGT00390000000713 #18	ENSGT00940000154534.a #19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065.c	ENSGT00680000100037	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000023190	HOXB3 (ENSLLEG00000023143) #9	HOXB2 (ENSLLEG00000023108) #10	HOXB1 (ENSLLEG00000023048) #11	SKAP1 (ENSLLEG00000022705) #12	SNX11 (ENSLLEG00000022564) #13	CBX1 (ENSLLEG00000022470) #14	NFE2L1 (ENSLLEG00000022364) #16	COPZ2 (ENSLLEG00000022282) #17	CDK5RAP3 (ENSLLEG00000022067) #18	PRR15L (ENSLLEG00000022006) #19	PNPO (ENSLLEG00000021591) #20	ENSLLEG00000021466	SP2 (ENSLLEG00000021414) #21	ENSLLEG00000021350	SP6 (ENSLLEG00000021323) #22	SCRN2 (ENSLLEG00000021262) #23	ENSLLEG00000024888 #25	TBX21 (ENSLLEG00000024840) #27	ENSLLEG00000024817	TBKBP1 (ENSLLEG00000024678) #28	ENSLLEG00000024653	KPNB1 (ENSLLEG00000024335) #29	ENSLLEG00000023877 #30	ENSLLEG00000023810	MRPL45 (ENSLLEG00000023547) #31	ENSLLEG00000023454 #32	ENSLLEG00000023420	ENSLLEG00000023353	SOCS7 (ENSLLEG00000023150) #33	ARHGAP23 (ENSLLEG00000022344) #34
Frog	MODERN SPECIES	1	hoxb5 (ENSXETG00000021978) #7	hoxb4 (ENSXETG00000021973) #8	hoxb3 (ENSXETG00000021967) #9	hoxb2 (ENSXETG00000027353) #10	hoxb1 (ENSXETG00000049208) #11	skap1 (ENSXETG00000027357) #12	snx11 (ENSXETG00000038807) #13	cbx1 (ENSXETG00000021962) #14	nfe2l1 (ENSXETG00000021958) #16	copz2 (ENSXETG00000021957) #17	prr15l (ENSXETG00000032726) #19	cdk5rap3 (ENSXETG00000027359) #18	XB5788060 [provisional] (ENSXETG00000027360)	sp2 (ENSXETG00000021952) #21	ENSXETG00000043506	sp6 (ENSXETG00000048156) #22	scrn2 (ENSXETG00000021947) #23	lrrc46 (ENSXETG00000045741) #24	tbx21 (ENSXETG00000041059) #27	mrpl10 (ENSXETG00000014749) #25	ENSXETG00000047787	pcgf2 (ENSXETG00000014746)	mllt6 (ENSXETG00000014744)	ENSXETG00000039202 #37	srcin1 (ENSXETG00000014743) #36	ENSXETG00000047667	arhgap23 (ENSXETG00000014740) #34	socs7 (ENSXETG00000034343) #33	gpr179 (ENSXETG00000033123) #32	mrpl45 (ENSXETG00000014731) #31	ENSXETG00000036628