Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000161498 #22
Euteleostomi	ANCESTRAL SPECIES	33	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152 #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000166447	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00950000184771	ENSGT00940000160776 #32	ENSGT00390000012679 #31	ENSGT00940000156314 #33	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730
Sarcopterygii	ANCESTRAL SPECIES	94	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152 #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT01100000263518.A.a.b	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152 #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000172404	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Theria	ANCESTRAL SPECIES	9	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000172404	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Primates	ANCESTRAL SPECIES	3	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Olive baboon	MODERN SPECIES	8	HOXB6 (ENSPANG00000022891) #7	HOXB5 (ENSPANG00000022889) #8	HOXB4 (ENSPANG00000022888) #9	ENSPANG00000045928 #10	HOXB2 (ENSPANG00000034765) #11	HOXB1 (ENSPANG00000022886) #12	SKAP1 (ENSPANG00000022897) #13	ENSPANG00000026200 #14	SNX11 (ENSPANG00000022898) #15	CBX1 (ENSPANG00000022906) #16	NFE2L1 (ENSPANG00000022904) #17	COPZ2 (ENSPANG00000022903) #18	CDK5RAP3 (ENSPANG00000022902) #19	PNPO (ENSPANG00000022924) #20	SP2 (ENSPANG00000022922) #21	SP6 (ENSPANG00000017158) #22	SCRN2 (ENSPANG00000022920) #23	LRRC46 (ENSPANG00000022918) #24	MRPL10 (ENSPANG00000022926) #25	OSBPL7 (ENSPANG00000022928) #26	TBX21 (ENSPANG00000022107) #27	TBKBP1 (ENSPANG00000022108) #28	KPNB1 (ENSPANG00000022099) #29	NPEPPS (ENSPANG00000022080) #30	MRPL45 (ENSPANG00000022083) #31	GPR179 (ENSPANG00000022074) #32	SOCS7 (ENSPANG00000022062) #33	ARHGAP23 (ENSPANG00000022030) #34	SRCIN1 (ENSPANG00000022035) #35	ENSPANG00000041026 #36	EPOP (ENSPANG00000041909) #37
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Sooty mangabey	MODERN SPECIES	564	HOXB5 (ENSCATG00000027616) #8	HOXB3 (ENSCATG00000031126)	HOXB4 (ENSCATG00000040704) #9	HOXB2 (ENSCATG00000035238) #11	HOXB1 (ENSCATG00000035575) #12	SKAP1 (ENSCATG00000044458) #13	ENSCATG00000019817 #14	SNX11 (ENSCATG00000030351) #15	ENSCATG00000034735 ##16	NFE2L1 (ENSCATG00000040775) #17	COPZ2 (ENSCATG00000042708) #18	CDK5RAP3 (ENSCATG00000006699) #19	PRR15L (ENSCATG00000020186)	PNPO (ENSCATG00000039934) #20	ENSCATG00000003341 #21	SP6 (ENSCATG00000020123) #22	SCRN2 (ENSCATG00000038846) #23	LRRC46 (ENSCATG00000031406) #24	MRPL10 (ENSCATG00000035686) #25	OSBPL7 (ENSCATG00000033623) #26	TBX21 (ENSCATG00000010529) #27	TBKBP1 (ENSCATG00000040564) #28	KPNB1 (ENSCATG00000037124) #29	NPEPPS (ENSCATG00000011160) #30	ENSCATG00000005112 #31	GPR179 (ENSCATG00000016000) #32	SOCS7 (ENSCATG00000038123) #33	ARHGAP23 (ENSCATG00000031687) #34	SRCIN1 (ENSCATG00000035063) #35	ENSCATG00000032235	EPOP (ENSCATG00000021365) #37
Drill	MODERN SPECIES	1297	HOXB6 (ENSMLEG00000029580) #7	HOXB5 (ENSMLEG00000009970) #8	HOXB3 (ENSMLEG00000026268)	HOXB4 (ENSMLEG00000029897) #9	HOXB2 (ENSMLEG00000031955) #11	HOXB1 (ENSMLEG00000037557) #12	SKAP1 (ENSMLEG00000029308) #13	SNX11 (ENSMLEG00000039008) #15	CBX1 (ENSMLEG00000038745) #16	NFE2L1 (ENSMLEG00000039330) #17	COPZ2 (ENSMLEG00000039090) #18	CDK5RAP3 (ENSMLEG00000033869) #19	PRR15L (ENSMLEG00000020212)	PNPO (ENSMLEG00000040872) #20	SP2 (ENSMLEG00000032228) #21	SP6 (ENSMLEG00000027177) #22	SCRN2 (ENSMLEG00000041491) #23	LRRC46 (ENSMLEG00000031583) #24	MRPL10 (ENSMLEG00000042780) #25	OSBPL7 (ENSMLEG00000040663) #26
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b ##36	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.n #31	ENSGT00940000160776 #32	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.a.b	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Rhesus	MODERN SPECIES	7	HOXB5 (ENSMMUG00000051420) #8	ENSMMUG00000045203 #10	HOXB4 (ENSMMUG00000052130) #9	HOXB2 (ENSMMUG00000057001) #11	HOXB1 (ENSMMUG00000022212) #12	SKAP1 (ENSMMUG00000050742) #13	SNX11 (ENSMMUG00000020658) #15	CBX1 (ENSMMUG00000019882) #16	NFE2L1 (ENSMMUG00000021935) #17	COPZ2 (ENSMMUG00000021934) #18	CDK5RAP3 (ENSMMUG00000004760) #19	PRR15L (ENSMMUG00000050551)	PNPO (ENSMMUG00000003325) #20	SP2 (ENSMMUG00000004765) #21	ENSMMUG00000053935 ##36	SP6 (ENSMMUG00000061952) #22	MRPL10 (ENSMMUG00000021486) #23	LRRC46 (ENSMMUG00000061605) #24	OSBPL7 (ENSMMUG00000019039) #26	TBX21 (ENSMMUG00000057231) #27	TBKBP1 (ENSMMUG00000019762) #28	KPNB1 (ENSMMUG00000019760) #29	NPEPPS (ENSMMUG00000005869) #30	MRPL45 (ENSMMUG00000030213) #31	GPR179 (ENSMMUG00000020528) #32	ENSMMUG00000055904	SOCS7 (ENSMMUG00000020531) #33	ARHGAP23 (ENSMMUG00000020020) #34	SRCIN1 (ENSMMUG00000005041) #35	EPOP (ENSMMUG00000013378) #37	MLLT6 (ENSMMUG00000002637)
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000062776 #10	HOXB2 (ENSMFAG00000034146) #11	HOXB1 (ENSMFAG00000052359) #12	SKAP1 (ENSMFAG00000038763) #13	ENSMFAG00000048147	ENSMFAG00000047205	SNX11 (ENSMFAG00000001845) #15	CBX1 (ENSMFAG00000036790) #16	NFE2L1 (ENSMFAG00000035583) #17	COPZ2 (ENSMFAG00000045896) #18	CDK5RAP3 (ENSMFAG00000046364) #19	PRR15L (ENSMFAG00000030161)	PNPO (ENSMFAG00000039285) #20	SP2 (ENSMFAG00000038712) #21	ENSMFAG00000052999 ##36	SP6 (ENSMFAG00000030247) #22	ENSMFAG00000030335 #23	LRRC46 (ENSMFAG00000031915) #24	OSBPL7 (ENSMFAG00000001330) #26	TBX21 (ENSMFAG00000042504) #27	TBKBP1 (ENSMFAG00000001252) #28	KPNB1 (ENSMFAG00000030197) #29	NPEPPS (ENSMFAG00000003608) #30	MRPL45 (ENSMFAG00000043718) #31	GPR179 (ENSMFAG00000002774) #32	ENSMFAG00000064016	SOCS7 (ENSMFAG00000044702) #33	ENSMFAG00000062343 ##36	ENSMFAG00000049053	SRCIN1 (ENSMFAG00000031842) #35	MLLT6 (ENSMFAG00000039477)
Pig-tailed macaque	MODERN SPECIES	494	HOXB5 (ENSMNEG00000039003) #8	HOXB4 (ENSMNEG00000032435) #9	HOXB3 (ENSMNEG00000032425)	HOXB2 (ENSMNEG00000043416) #11	HOXB1 (ENSMNEG00000036848) #12	ENSMNEG00000033446 #14	SKAP1 (ENSMNEG00000015541) #13	SNX11 (ENSMNEG00000034920) #15	CBX1 (ENSMNEG00000039720) #16	NFE2L1 (ENSMNEG00000037921) #17	COPZ2 (ENSMNEG00000038720) #18	CDK5RAP3 (ENSMNEG00000029039) #19	PRR15L (ENSMNEG00000028174)	PNPO (ENSMNEG00000037010) #20	SP2 (ENSMNEG00000029577) #21	SP6 (ENSMNEG00000023861) #22	SCRN2 (ENSMNEG00000031786) #23	LRRC46 (ENSMNEG00000037035) #24	MRPL10 (ENSMNEG00000030905) #25	OSBPL7 (ENSMNEG00000042829) #26	TBX21 (ENSMNEG00000036627) #27	TBKBP1 (ENSMNEG00000039009) #28	KPNB1 (ENSMNEG00000040927) #29	NPEPPS (ENSMNEG00000000757) #30	ENSMNEG00000044663 #31	GPR179 (ENSMNEG00000042928) #32	SOCS7 (ENSMNEG00000032316) #33	ARHGAP23 (ENSMNEG00000037605) #34	ENSMNEG00000035424	SRCIN1 (ENSMNEG00000015519) #35	EPOP (ENSMNEG00000026740) #37
Vervet Monkey	MODERN SPECIES	7	HOXB5 (ENSCSAG00000002529) #8	HOXB4 (ENSCSAG00000002530) #9	HOXB3 (ENSCSAG00000002533)	HOXB2 (ENSCSAG00000002536) #11	HOXB1 (ENSCSAG00000002538) #12	ENSCSAG00000019043 #14	SKAP1 (ENSCSAG00000002542) #13	SNX11 (ENSCSAG00000002545) #15	CBX1 (ENSCSAG00000002547) #16	NFE2L1 (ENSCSAG00000002550) #17	COPZ2 (ENSCSAG00000002558) #18	CDK5RAP3 (ENSCSAG00000002562) #19	PRR15L (ENSCSAG00000019042)	PNPO (ENSCSAG00000002565) #20	SP2 (ENSCSAG00000002567) #21	SP6 (ENSCSAG00000019041) #22	SCRN2 (ENSCSAG00000002569) #23	LRRC46 (ENSCSAG00000002574) #24	MRPL10 (ENSCSAG00000002576) #25	OSBPL7 (ENSCSAG00000002580) #26	TBX21 (ENSCSAG00000002587) #27	TBKBP1 (ENSCSAG00000002598) #28	KPNB1 (ENSCSAG00000002605) #29	NPEPPS (ENSCSAG00000002610) #30	ENSCSAG00000002616 ##31	GPR179 (ENSCSAG00000002621) #32	SOCS7 (ENSCSAG00000002628) #33	ARHGAP23 (ENSCSAG00000002632) #34	SRCIN1 (ENSCSAG00000002635) #35	EPOP (ENSCSAG00000019040) #37	MLLT6 (ENSCSAG00000002640)
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.m ##31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Black snub-nosed monkey	MODERN SPECIES	614																SP6 (ENSRBIG00000030852) #22	LRRC46 (ENSRBIG00000036612) #24	SCRN2 (ENSRBIG00000017158) #23	MRPL10 (ENSRBIG00000008990) #25	OSBPL7 (ENSRBIG00000042030) #26	TBX21 (ENSRBIG00000043622) #27	TBKBP1 (ENSRBIG00000042820) #28	KPNB1 (ENSRBIG00000002254) #29	NPEPPS (ENSRBIG00000031000) #30	MRPL45 (ENSRBIG00000042781) ##31	GPR179 (ENSRBIG00000038216) #32	SOCS7 (ENSRBIG00000034893) #33	ARHGAP23 (ENSRBIG00000044119) #34	SRCIN1 (ENSRBIG00000044193) #35	EPOP (ENSRBIG00000041584) #37	MLLT6 (ENSRBIG00000042606)
Golden snub-nosed monkey	MODERN SPECIES	585	HOXB7 (ENSRROG00000035066)	HOXB6 (ENSRROG00000028093) #7	HOXB5 (ENSRROG00000030674) #8	HOXB3 (ENSRROG00000037630)	HOXB2 (ENSRROG00000044849) #11	HOXB1 (ENSRROG00000042747) #12	SKAP1 (ENSRROG00000031517) #13	SNX11 (ENSRROG00000029464) #15	CBX1 (ENSRROG00000041227) #16	NFE2L1 (ENSRROG00000044774) #17	COPZ2 (ENSRROG00000030969) #18	CDK5RAP3 (ENSRROG00000044651) #19	PRR15L (ENSRROG00000009484)	PNPO (ENSRROG00000044027) #20	SP2 (ENSRROG00000037481) #21	SP6 (ENSRROG00000008983) #22	SCRN2 (ENSRROG00000037252) #23	LRRC46 (ENSRROG00000039559) #24	MRPL10 (ENSRROG00000033938) #25	OSBPL7 (ENSRROG00000017659) #26
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713.h.b #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.i #30	ENSGT00940000155246.j.b.b #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713.h.a #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.i #30	ENSGT00940000155246.j.b.b #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713.h.a.a.b #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.j.b.a #30	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00940000155111.h	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a
Gorilla	MODERN SPECIES	18	HOXB7 (ENSGGOG00000002637)	HOXB6 (ENSGGOG00000002634) #7	HOXB5 (ENSGGOG00000023582) #8	HOXB3 (ENSGGOG00000012838)	HOXB2 (ENSGGOG00000009910) #11	HOXB1 (ENSGGOG00000009904) #12	SKAP1 (ENSGGOG00000012624) #13	ENSGGOG00000025896	CBX1 (ENSGGOG00000024063) #16	NFE2L1 (ENSGGOG00000002268) #17	COPZ2 (ENSGGOG00000002264) #18	ENSGGOG00000022994 #19	PRR15L (ENSGGOG00000037816)	PNPO (ENSGGOG00000003786) #20	SP2 (ENSGGOG00000005330) #21	SP6 (ENSGGOG00000036261) #22	SCRN2 (ENSGGOG00000004547) #23	LRRC46 (ENSGGOG00000012667) #24	MRPL10 (ENSGGOG00000015353) #25	OSBPL7 (ENSGGOG00000015344) #26	TBX21 (ENSGGOG00000002208) #27	TBKBP1 (ENSGGOG00000002206) #28	KPNB1 (ENSGGOG00000008089) #29	ENSGGOG00000022991 #30	EFCAB13 (ENSGGOG00000022715)	ENSGGOG00000023488	ITGB3 (ENSGGOG00000007757)	MYL4 (ENSGGOG00000009722)	CDC27 (ENSGGOG00000014729)	ENSGGOG00000040439	RPRML (ENSGGOG00000000099)
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713.h.a.a.b #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.j.b.a #30	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a
Pan	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713.h.a.a.b #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603.b #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.j.b.a #30	ENSGT00940000153464.A.b.b	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a
Chimpanzee	MODERN SPECIES	8	HOXB6 (ENSPTRG00000009356) #7	HOXB5 (ENSPTRG00000009355) #8	HOXB4 (ENSPTRG00000009354) #9	HOXB3 (ENSPTRG00000052423)	HOXB2 (ENSPTRG00000009352) #11	HOXB1 (ENSPTRG00000009351) #12	SKAP1 (ENSPTRG00000009350) #13	SNX11 (ENSPTRG00000009349) #15	CBX1 (ENSPTRG00000052115) #16	NFE2L1 (ENSPTRG00000022631) #17	COPZ2 (ENSPTRG00000009346) #18	CDK5RAP3 (ENSPTRG00000009345) #19	PRR15L (ENSPTRG00000047216)	PNPO (ENSPTRG00000009343) #20	SP2 (ENSPTRG00000009342) #21	SP6 (ENSPTRG00000009340) #22	SCRN2 (ENSPTRG00000009339) #23	LRRC46 (ENSPTRG00000009338) #24	MRPL10 (ENSPTRG00000009337) #25	OSBPL7 (ENSPTRG00000009336) #26	TBX21 (ENSPTRG00000009335) #27	TBKBP1 (ENSPTRG00000009334) #28	KPNB1 (ENSPTRG00000009333) #29	NPEPPS (ENSPTRG00000009330) #30	ENSPTRG00000048037	ENSPTRG00000045761	EFCAB13 (ENSPTRG00000009329)	MYL4 (ENSPTRG00000024314)	CDC27 (ENSPTRG00000009326)	ENSPTRG00000051416	ENSPTRG00000052446
Bonobo	MODERN SPECIES	8	HOXB6 (ENSPPAG00000032229) #7	HOXB5 (ENSPPAG00000039181) #8	HOXB4 (ENSPPAG00000040659) #9	HOXB3 (ENSPPAG00000032630)	HOXB2 (ENSPPAG00000027417) #11	HOXB1 (ENSPPAG00000039129) #12	SKAP1 (ENSPPAG00000039277) #13	SNX11 (ENSPPAG00000033185) #15	ENSPPAG00000030413 #16	NFE2L1 (ENSPPAG00000031737) #17	COPZ2 (ENSPPAG00000043351) #18	ENSPPAG00000029145 #19	PRR15L (ENSPPAG00000003316)	PNPO (ENSPPAG00000038148) #20	SP2 (ENSPPAG00000027065) #21	SP6 (ENSPPAG00000026169) #22	SCRN2 (ENSPPAG00000028214) #23	LRRC46 (ENSPPAG00000038983) #24	MRPL10 (ENSPPAG00000034452) #25	OSBPL7 (ENSPPAG00000027887) #26	TBX21 (ENSPPAG00000033988) #27	ENSPPAG00000040088 #28	KPNB1 (ENSPPAG00000028842) #29	ENSPPAG00000041383 #30	ENSPPAG00000031240	ENSPPAG00000041328	ENSPPAG00000019537	ITGB3 (ENSPPAG00000030328)	MYL4 (ENSPPAG00000032176)	CDC27 (ENSPPAG00000035989)	RPRML (ENSPPAG00000021337)
Human	MODERN SPECIES	8	HOXB6 (ENSG00000108511) #7	HOXB5 (ENSG00000120075) #8	HOXB4 (ENSG00000182742) #9	HOXB3 (ENSG00000120093)	HOXB2 (ENSG00000173917) #11	HOXB1 (ENSG00000120094) #12	SKAP1 (ENSG00000141293) #13	SNX11 (ENSG00000002919) #15	CBX1 (ENSG00000108468) #16	NFE2L1 (ENSG00000082641) #17	COPZ2 (ENSG00000005243) #18	CDK5RAP3 (ENSG00000108465) #19	PRR15L (ENSG00000167183)	PNPO (ENSG00000108439) #20	SP2 (ENSG00000167182) #21	SP6 (ENSG00000189120) #22	SCRN2 (ENSG00000141295) #23	LRRC46 (ENSG00000141294) #24	MRPL10 (ENSG00000159111) #25	OSBPL7 (ENSG00000006025) #26	TBX21 (ENSG00000073861) #27	TBKBP1 (ENSG00000198933) #28	KPNB1 (ENSG00000108424) #29	NPEPPS (ENSG00000141279) #30	EFCAB13 (ENSG00000178852)	ITGB3 (ENSG00000259207)	MYL4 (ENSG00000198336)	CDC27 (ENSG00000004897)	RPRML (ENSG00000179673)	GOSR2 (ENSG00000108433)	WNT9B (ENSG00000158955)
Orangutan	MODERN SPECIES	8	HOXB6 (ENSPPYG00000008899) #7	HOXB5 (ENSPPYG00000008898) #8	HOXB4 (ENSPPYG00000008897) #9	HOXB3 (ENSPPYG00000008896)	HOXB2 (ENSPPYG00000008895) #11	HOXB1 (ENSPPYG00000008894) #12	SKAP1 (ENSPPYG00000008893) #13	SNX11 (ENSPPYG00000008892) #15	ENSPPYG00000008891 ##16	NFE2L1 (ENSPPYG00000036998) #17	ENSPPYG00000008889 #18	CDK5RAP3 (ENSPPYG00000008888) #19	PRR15L (ENSPPYG00000008887)	PNPO (ENSPPYG00000040967) #20	SP2 (ENSPPYG00000008885) #21	SP6 (ENSPPYG00000008884) #22	SCRN2 (ENSPPYG00000008883) #23	LRRC46 (ENSPPYG00000032761) #24	MRPL10 (ENSPPYG00000008881) #25	OSBPL7 (ENSPPYG00000008880) #26	TBX21 (ENSPPYG00000008879) #27	TBKBP1 (ENSPPYG00000008878) #28	KPNB1 (ENSPPYG00000025935) #29	NPEPPS (ENSPPYG00000008877) #30	MRPL45 (ENSPPYG00000008876) #31	GPR179 (ENSPPYG00000008874) #32	ENSPPYG00000039847	SOCS7 (ENSPPYG00000008873) #33	ARHGAP23 (ENSPPYG00000008872) #34	SRCIN1 (ENSPPYG00000008871) #35	ENSPPYG00000032356
Gibbon	MODERN SPECIES	105	ENSNLEG00000029075	HOXB6 (ENSNLEG00000002585) #7	HOXB5 (ENSNLEG00000002574) #8	HOXB4 (ENSNLEG00000002570) #9	HOXB2 (ENSNLEG00000002566) #11	ENSNLEG00000018815 #12	SKAP1 (ENSNLEG00000002519) #13	SNX11 (ENSNLEG00000002479) #15	ENSNLEG00000002435 #16	NFE2L1 (ENSNLEG00000002415) #17	ENSNLEG00000002409 #18	ENSNLEG00000002109 #19	PRR15L (ENSNLEG00000002102)	PNPO (ENSNLEG00000002062) #20	ENSNLEG00000002058 #21	SP6 (ENSNLEG00000002050) #22	SCRN2 (ENSNLEG00000001940) #23	LRRC46 (ENSNLEG00000001902) #24	MRPL10 (ENSNLEG00000001803) #25	OSBPL7 (ENSNLEG00000001657) #26	ENSNLEG00000001655 #27	ENSNLEG00000032565 #28	KPNB1 (ENSNLEG00000001446) #29
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.a #29	ENSGT00550000074898.b #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.a #29	ENSGT00550000074898.b #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.a #29	ENSGT00550000074898.b #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35
Bolivian squirrel monkey	MODERN SPECIES	86	HOXB5 (ENSSBOG00000018198) #8	HOXB4 (ENSSBOG00000024432) #9	HOXB3 (ENSSBOG00000030844)	HOXB2 (ENSSBOG00000025070) #11	HOXB1 (ENSSBOG00000034875) #12	ENSSBOG00000019520	SKAP1 (ENSSBOG00000029434) #13	SNX11 (ENSSBOG00000026967) #15	ENSSBOG00000031880 ##16	NFE2L1 (ENSSBOG00000023867) #17	COPZ2 (ENSSBOG00000033633) #18	CDK5RAP3 (ENSSBOG00000033272) #19	PRR15L (ENSSBOG00000019240)	PNPO (ENSSBOG00000021213) #20	SP2 (ENSSBOG00000029098) #21	SP6 (ENSSBOG00000014210) #22	SCRN2 (ENSSBOG00000027391) #23	LRRC46 (ENSSBOG00000026980) #24	MRPL10 (ENSSBOG00000004214) #25	OSBPL7 (ENSSBOG00000033435) #26	TBX21 (ENSSBOG00000028744) #27	ENSSBOG00000029189 #28	ENSSBOG00000014766	KPNB1 (ENSSBOG00000030025) #29	NPEPPS (ENSSBOG00000032725) #30	MRPL45 (ENSSBOG00000028242) #31	GPR179 (ENSSBOG00000022698) #32	SOCS7 (ENSSBOG00000031544) #33	ARHGAP23 (ENSSBOG00000017157) #34	ENSSBOG00000020882	SRCIN1 (ENSSBOG00000015321) #35
Capuchin	MODERN SPECIES	228	HOXB6 (ENSCCAG00000022842) #7	HOXB5 (ENSCCAG00000036867) #8	HOXB4 (ENSCCAG00000020311) #9	HOXB3 (ENSCCAG00000013598)	HOXB2 (ENSCCAG00000024035) #11	HOXB1 (ENSCCAG00000027667) #12	ENSCCAG00000019181	SKAP1 (ENSCCAG00000035663) #13	SNX11 (ENSCCAG00000030167) #15	CBX1 (ENSCCAG00000025085) #16	NFE2L1 (ENSCCAG00000029090) #17	COPZ2 (ENSCCAG00000021292) #18	CDK5RAP3 (ENSCCAG00000038053) #19	PNPO (ENSCCAG00000029175) #20	SP2 (ENSCCAG00000038047) #21	SP6 (ENSCCAG00000020330) #22	SCRN2 (ENSCCAG00000031435) #23	LRRC46 (ENSCCAG00000030568) #24	MRPL10 (ENSCCAG00000023150) #25	OSBPL7 (ENSCCAG00000034097) #26	TBX21 (ENSCCAG00000026112) #27	TBKBP1 (ENSCCAG00000026129) #28	ENSCCAG00000029263 #29	NPEPPS (ENSCCAG00000035472) #30	MRPL45 (ENSCCAG00000034579) #31	GPR179 (ENSCCAG00000037056) #32	SOCS7 (ENSCCAG00000033044) #33	ARHGAP23 (ENSCCAG00000025162) #34	SRCIN1 (ENSCCAG00000029783) #35	ENSCCAG00000023743	MLLT6 (ENSCCAG00000028213)
Marmoset	MODERN SPECIES	17	HOXB4 (ENSCJAG00000007480) #9	HOXB3 (ENSCJAG00000007487)	HOXB2 (ENSCJAG00000007494) #11	HOXB1 (ENSCJAG00000007496) #12	ENSCJAG00000038853	SKAP1 (ENSCJAG00000007504) #13	SNX11 (ENSCJAG00000039549) #15	CBX1 (ENSCJAG00000042052) #16	NFE2L1 (ENSCJAG00000007542) #17	ENSCJAG00000058197	COPZ2 (ENSCJAG00000007567) #18	CDK5RAP3 (ENSCJAG00000007669) #19	PRR15L (ENSCJAG00000044487)	PNPO (ENSCJAG00000007693) #20	SP2 (ENSCJAG00000007713) #21	SP6 (ENSCJAG00000043946) #22	SCRN2 (ENSCJAG00000047705) #23	LRRC46 (ENSCJAG00000007776) #24	MRPL10 (ENSCJAG00000007787) #25	OSBPL7 (ENSCJAG00000007585) #26	TBX21 (ENSCJAG00000007796) #27	TBKBP1 (ENSCJAG00000045710) #28	KPNB1 (ENSCJAG00000007834) #29	NPEPPS (ENSCJAG00000007985) #30	ENSCJAG00000048573	MRPL45 (ENSCJAG00000008080) #31	GPR179 (ENSCJAG00000008100) #32	SOCS7 (ENSCJAG00000008108) #33	ENSCJAG00000008111	ARHGAP23 (ENSCJAG00000008112) #34	SRCIN1 (ENSCJAG00000008123) #35
Mas night monkey	MODERN SPECIES	481	HOXB6 (ENSANAG00000023964) #7	HOXB5 (ENSANAG00000024299) #8	HOXB4 (ENSANAG00000024005) #9	HOXB3 (ENSANAG00000032072)	HOXB2 (ENSANAG00000023626) #11	HOXB1 (ENSANAG00000032306) #12	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #13	SNX11 (ENSANAG00000022588) #15	ENSANAG00000036853 ##16	NFE2L1 (ENSANAG00000027606) #17	COPZ2 (ENSANAG00000023309) #18	CDK5RAP3 (ENSANAG00000021880) #19	PNPO (ENSANAG00000026080) #20	SP2 (ENSANAG00000032738) #21	SP6 (ENSANAG00000019338) #22	SCRN2 (ENSANAG00000021482) #23	LRRC46 (ENSANAG00000028496) #24	MRPL10 (ENSANAG00000022792) #25	OSBPL7 (ENSANAG00000021406) #26	TBX21 (ENSANAG00000037999) #27	TBKBP1 (ENSANAG00000020710) #28	ENSANAG00000024932 #29	ENSANAG00000019395	NPEPPS (ENSANAG00000028371) #30	MRPL45 (ENSANAG00000028167) #31	GPR179 (ENSANAG00000033667) #32	SOCS7 (ENSANAG00000028278) #33	ARHGAP23 (ENSANAG00000026348) #34	ENSANAG00000022130	SRCIN1 (ENSANAG00000027395) #35
Tarsier	MODERN SPECIES	7208								SKAP1 (ENSTSYG00000008218) #13	SNX11 (ENSTSYG00000035487) #15	CBX1 (ENSTSYG00000034806) #16	NFE2L1 (ENSTSYG00000011468) #17	COPZ2 (ENSTSYG00000030074) #18	CDK5RAP3 (ENSTSYG00000010313) #19	PNPO (ENSTSYG00000002012) #20	SP2 (ENSTSYG00000013766) #21	SP6 (ENSTSYG00000031192) #22	SCRN2 (ENSTSYG00000003730) #23	LRRC46 (ENSTSYG00000003710) #24	MRPL10 (ENSTSYG00000034759) #25	OSBPL7 (ENSTSYG00000014378) #26
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.h #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.h #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Mouse lemur	MODERN SPECIES	7	HOXB6 (ENSMICG00000042216) #7	HOXB5 (ENSMICG00000047139) #8	HOXB4 (ENSMICG00000043173) #9	HOXB3 (ENSMICG00000007522)	HOXB2 (ENSMICG00000038222) #11	HOXB1 (ENSMICG00000048152) #12	SKAP1 (ENSMICG00000047158) #13	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #15	NFE2L1 (ENSMICG00000014716) #17	ENSMICG00000009510 #16	COPZ2 (ENSMICG00000014097) #18	CDK5RAP3 (ENSMICG00000014077) #19	ENSMICG00000014065 #20	SP2 (ENSMICG00000036051) #21	SP6 (ENSMICG00000047695) #22	SCRN2 (ENSMICG00000004823) #23	LRRC46 (ENSMICG00000004816) #24	MRPL10 (ENSMICG00000048091) #25	OSBPL7 (ENSMICG00000004799) #26	TBX21 (ENSMICG00000035345) #27	TBKBP1 (ENSMICG00000012069) #28	KPNB1 (ENSMICG00000012059) #29	NPEPPS (ENSMICG00000012034) #30	MRPL45 (ENSMICG00000000626) #31	GPR179 (ENSMICG00000000628) #32	SOCS7 (ENSMICG00000000636) #33	ARHGAP23 (ENSMICG00000000638) #34	SRCIN1 (ENSMICG00000000639) #35	MLLT6 (ENSMICG00000002976)	CISD3 (ENSMICG00000030046)
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.h #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Coquerels sifaka	MODERN SPECIES	120	HOXB7 (ENSPCOG00000028248)	HOXB6 (ENSPCOG00000019931) #7	HOXB5 (ENSPCOG00000015692) #8	HOXB4 (ENSPCOG00000022963) #9	HOXB3 (ENSPCOG00000020113)	HOXB2 (ENSPCOG00000017380) #11	HOXB1 (ENSPCOG00000025930) #12	SKAP1 (ENSPCOG00000022221) #13	SNX11 (ENSPCOG00000011015) #15	ENSPCOG00000010902 #16	NFE2L1 (ENSPCOG00000021740) #17	COPZ2 (ENSPCOG00000018359) #18	CDK5RAP3 (ENSPCOG00000016598) #19	PNPO (ENSPCOG00000017906) #20	SP2 (ENSPCOG00000017198) #21	SP6 (ENSPCOG00000008529) #22	SCRN2 (ENSPCOG00000014438) #23	LRRC46 (ENSPCOG00000015829) #24	MRPL10 (ENSPCOG00000025492) #25	OSBPL7 (ENSPCOG00000019714) #26	TBX21 (ENSPCOG00000014387) #27	TBKBP1 (ENSPCOG00000026427) #28	KPNB1 (ENSPCOG00000026259) #29	ENSPCOG00000014331 #30	ENSPCOG00000027158 #30	MRPL45 (ENSPCOG00000014660) #31	GPR179 (ENSPCOG00000007958) #32	SOCS7 (ENSPCOG00000023874) #33	ARHGAP23 (ENSPCOG00000013530) #34	SRCIN1 (ENSPCOG00000008761) #35	MLLT6 (ENSPCOG00000016436)
Greater bamboo lemur	MODERN SPECIES	107								NFE2L1 (ENSPSMG00000007285) #17	ENSPSMG00000007339 #18	ENSPSMG00000007342	ENSPSMG00000007395 #19	PRR15L (ENSPSMG00000007406)	PNPO (ENSPSMG00000007445) #20	SP2 (ENSPSMG00000007456) #21	ENSPSMG00000007462 #21	SP6 (ENSPSMG00000007463) #22	SCRN2 (ENSPSMG00000007491) #23	LRRC46 (ENSPSMG00000007500) #24	MRPL10 (ENSPSMG00000007514) #25	OSBPL7 (ENSPSMG00000007730) #26	TBX21 (ENSPSMG00000007791) #27	TBKBP1 (ENSPSMG00000007810) #28	KPNB1 (ENSPSMG00000007848) #29	NPEPPS (ENSPSMG00000007984) #30	MRPL45 (ENSPSMG00000008060) #31	GPR179 (ENSPSMG00000008075) #32	SOCS7 (ENSPSMG00000008100) #33	ARHGAP23 (ENSPSMG00000008194) #34	SRCIN1 (ENSPSMG00000008297) #35	ENSPSMG00000008308	EPOP (ENSPSMG00000008312) #37
Bushbaby	MODERN SPECIES	133	HOXB6 (ENSOGAG00000008661) #7	HOXB5 (ENSOGAG00000032432) #8	HOXB4 (ENSOGAG00000033709) #9	HOXB3 (ENSOGAG00000032090)	HOXB2 (ENSOGAG00000029280) #11	HOXB1 (ENSOGAG00000031645) #12	SKAP1 (ENSOGAG00000015855) #13	SNX11 (ENSOGAG00000015854) #15	CBX1 (ENSOGAG00000005658) #16	NFE2L1 (ENSOGAG00000025191) #17	COPZ2 (ENSOGAG00000004954) #18	CDK5RAP3 (ENSOGAG00000004951) #19	PRR15L (ENSOGAG00000006187)	PNPO (ENSOGAG00000006186) #20	SP2 (ENSOGAG00000030380) #21	SP6 (ENSOGAG00000030282) #22	SCRN2 (ENSOGAG00000006181) #23	LRRC46 (ENSOGAG00000006177) #24	MRPL10 (ENSOGAG00000006173) #25	OSBPL7 (ENSOGAG00000006166) #26	TBX21 (ENSOGAG00000006160) #27	TBKBP1 (ENSOGAG00000032523) #28	KPNB1 (ENSOGAG00000006153) #29	NPEPPS (ENSOGAG00000006365) #30	MRPL45 (ENSOGAG00000015816) #31	GPR179 (ENSOGAG00000031431) #32	SOCS7 (ENSOGAG00000012422) #33	ARHGAP23 (ENSOGAG00000030856) #34	SRCIN1 (ENSOGAG00000009948) #35	EPOP (ENSOGAG00000030366) #37	MLLT6 (ENSOGAG00000011422)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Glires	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Muroidea	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.a.a ##16	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.a.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Golden Hamster	MODERN SPECIES	674	Hoxb7 (ENSMAUG00000021297)	Hoxb6 (ENSMAUG00000021423) #7	Hoxb5 (ENSMAUG00000021419) #8	Hoxb4 (ENSMAUG00000009367) #9	Hoxb3 (ENSMAUG00000011251)	Hoxb2 (ENSMAUG00000021979) #11	Hoxb1 (ENSMAUG00000013237) #12	Skap1 (ENSMAUG00000022191) #13	Snx11 (ENSMAUG00000021528) #15	ENSMAUG00000003463 #16	Nfe2l1 (ENSMAUG00000020456) #17	Copz2 (ENSMAUG00000010560) #18	Cdk5rap3 (ENSMAUG00000007991) #19	Pnpo (ENSMAUG00000021706) #20	Sp2 (ENSMAUG00000019269) #21	Sp6 (ENSMAUG00000009667) #22	Scrn2 (ENSMAUG00000010014) #23	Lrrc46 (ENSMAUG00000019416) #24	Mrpl10 (ENSMAUG00000000820) #25	Osbpl7 (ENSMAUG00000013876) #26	Tbx21 (ENSMAUG00000017507) #27	Tbkbp1 (ENSMAUG00000018604) #28	Kpnb1 (ENSMAUG00000006211) #29	Npepps (ENSMAUG00000017383) #30	Mrpl45 (ENSMAUG00000021636) #31	ENSMAUG00000015632 #32	Socs7 (ENSMAUG00000015461) #33	Arhgap23 (ENSMAUG00000018856) #34	Srcin1 (ENSMAUG00000021175) #35	Epop (ENSMAUG00000015662) #37	ENSMAUG00000019155
Chinese hamster chok1gshd	MODERN SPECIES	33	Hoxb5 (ENSCGRG00001016167) #8	Hoxb4 (ENSCGRG00001022431) #9	Hoxb3 (ENSCGRG00001016667)	Hoxb2 (ENSCGRG00001017587) #11	Hoxb1 (ENSCGRG00001024619) #12	ENSCGRG00001023355 #13	ENSCGRG00001020759 #13	Snx11 (ENSCGRG00001022221) #15	Cbx1 (ENSCGRG00001014799) ##16	Nfe2l1 (ENSCGRG00001015287) #17	Copz2 (ENSCGRG00001014767) #18	Cdk5rap3 (ENSCGRG00001006966) #19	Prr15l (ENSCGRG00001008926)	Pnpo (ENSCGRG00001018189) #20	Sp2 (ENSCGRG00001010976) #21	Sp6 (ENSCGRG00001002797) #22	Scrn2 (ENSCGRG00001022143) #23	Lrrc46 (ENSCGRG00001019758) #24	Mrpl10 (ENSCGRG00001024199) #25	Osbpl7 (ENSCGRG00001013737) #26	Tbx21 (ENSCGRG00001008276) #27	Tbkbp1 (ENSCGRG00001018526) #28	Kpnb1 (ENSCGRG00001016042) #29	Npepps (ENSCGRG00001005930) #30	Mrpl45 (ENSCGRG00001000066) #31	Gpr179 (ENSCGRG00001014708) #32	Socs7 (ENSCGRG00001021949) #33	Arhgap23 (ENSCGRG00001018199) #34	Srcin1 (ENSCGRG00001017021) #35	ENSCGRG00001002748	Epop (ENSCGRG00001011711) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Northern American deer mouse	MODERN SPECIES	21	Hoxb4 (ENSPEMG00000029805) #9	Hoxb3 (ENSPEMG00000028692)	Hoxb2 (ENSPEMG00000029510) #11	Hoxb1 (ENSPEMG00000023977) #12	Skap1 (ENSPEMG00000000585) #13	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #15	Cbx1 (ENSPEMG00000020976) ##16	Nfe2l1 (ENSPEMG00000010512) #17	Copz2 (ENSPEMG00000011137) #18	Cdk5rap3 (ENSPEMG00000020712) #19	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436)	Pnpo (ENSPEMG00000025094) #20	Sp2 (ENSPEMG00000017112) #21	Sp6 (ENSPEMG00000001231) #22	Scrn2 (ENSPEMG00000020381) #23	Lrrc46 (ENSPEMG00000020507) #24	Mrpl10 (ENSPEMG00000014613) #25	Osbpl7 (ENSPEMG00000001423) #26	Tbx21 (ENSPEMG00000010056) #27	Tbkbp1 (ENSPEMG00000027762) #28	Kpnb1 (ENSPEMG00000017783) #29	Npepps (ENSPEMG00000012220) #30	Mrpl45 (ENSPEMG00000005654) #31	ENSPEMG00000027307 #32	Socs7 (ENSPEMG00000000521) #33	Arhgap23 (ENSPEMG00000004296) #34	Srcin1 (ENSPEMG00000014663) #35	Epop (ENSPEMG00000026437) #37	Mllt6 (ENSPEMG00000015310)
Prairie vole	MODERN SPECIES	114	Hoxb6 (ENSMOCG00000020355) #7	Hoxb5 (ENSMOCG00000014523) #8	Hoxb4 (ENSMOCG00000022964) #9	Hoxb3 (ENSMOCG00000020739)	Hoxb2 (ENSMOCG00000014846) #11	Hoxb1 (ENSMOCG00000002452) #12	Skap1 (ENSMOCG00000018431) #13	Snx11 (ENSMOCG00000019303) #15	Cbx1 (ENSMOCG00000001520) #16	Nfe2l1 (ENSMOCG00000016002) #17	Copz2 (ENSMOCG00000022427) #18	Cdk5rap3 (ENSMOCG00000019534) #19	Prr15l (ENSMOCG00000006695)	Pnpo (ENSMOCG00000011655) #20	Sp2 (ENSMOCG00000020935) #21	Sp6 (ENSMOCG00000007065) #22	Scrn2 (ENSMOCG00000019511) #23	Lrrc46 (ENSMOCG00000016707) #24	Mrpl10 (ENSMOCG00000019451) #25	Osbpl7 (ENSMOCG00000021054) #26	Tbx21 (ENSMOCG00000004097) #27	Tbkbp1 (ENSMOCG00000017020) #28	Kpnb1 (ENSMOCG00000003683) #29	Npepps (ENSMOCG00000011600) #30	Mrpl45 (ENSMOCG00000002139) #31	ENSMOCG00000022822 #32	Socs7 (ENSMOCG00000015144) #33	Arhgap23 (ENSMOCG00000005846) #34	Srcin1 (ENSMOCG00000017212) #35	Epop (ENSMOCG00000020613) #37	Mllt6 (ENSMOCG00000002332)
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Mus	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Mouse	MODERN SPECIES	2	Hoxb6 (ENSMUSG00000000690) #7	Hoxb5 (ENSMUSG00000038700) #8	Hoxb4 (ENSMUSG00000038692) #9	Hoxb3 (ENSMUSG00000048763)	Hoxb2 (ENSMUSG00000075588) #11	Hoxb1 (ENSMUSG00000018973) #12	Skap1 (ENSMUSG00000057058) #13	Snx11 (ENSMUSG00000020876) #15	Cbx1 (ENSMUSG00000018666) #16	Nfe2l1 (ENSMUSG00000038615) #17	Copz2 (ENSMUSG00000018672) #18	Cdk5rap3 (ENSMUSG00000018669) #19	Prr15l (ENSMUSG00000047040)	Pnpo (ENSMUSG00000018659) #20	Sp2 (ENSMUSG00000018678) #21	Sp6 (ENSMUSG00000038560) #22	Scrn2 (ENSMUSG00000020877) #23	Lrrc46 (ENSMUSG00000020878) #24	Mrpl10 (ENSMUSG00000001445) #25	Osbpl7 (ENSMUSG00000038534) #26	Tbx21 (ENSMUSG00000001444) #27	Tbkbp1 (ENSMUSG00000038517) #28	Kpnb1 (ENSMUSG00000001440) #29	Npepps (ENSMUSG00000001441) #30	Mrpl45 (ENSMUSG00000018882) #31	Gpr179 (ENSMUSG00000070337) #32	Socs7 (ENSMUSG00000038485) #33	Arhgap23 (ENSMUSG00000049807) #34	Srcin1 (ENSMUSG00000038453) #35	Epop (ENSMUSG00000043439) #37	Mllt6 (ENSMUSG00000038437)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00800000125316	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
spretus	MODERN SPECIES	2	Hoxb5 (MGP_SPRETEiJ_G0017874) #8	Hoxb4 (MGP_SPRETEiJ_G0017875) #9	Hoxb3 (MGP_SPRETEiJ_G0017876)	Hoxb2 (MGP_SPRETEiJ_G0017877) #11	Hoxb1 (MGP_SPRETEiJ_G0017878) #12	MGP_SPRETEiJ_G0017879 #13	Snx11 (MGP_SPRETEiJ_G0017880) #15	Cbx1 (MGP_SPRETEiJ_G0017881) #16	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #17	Copz2 (MGP_SPRETEiJ_G0017884) #18	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #19	Prr15l (MGP_SPRETEiJ_G0017886)	Pnpo (MGP_SPRETEiJ_G0017887) #20	Sp2 (MGP_SPRETEiJ_G0017888) #21	Sp6 (MGP_SPRETEiJ_G0017889) #22	Scrn2 (MGP_SPRETEiJ_G0017890) #23	Lrrc46 (MGP_SPRETEiJ_G0017891) #24	Mrpl10 (MGP_SPRETEiJ_G0017892) #25	Osbpl7 (MGP_SPRETEiJ_G0017893) #26	Tbx21 (MGP_SPRETEiJ_G0017894) #27	Tbkbp1 (MGP_SPRETEiJ_G0017895) #28	Kpnb1 (MGP_SPRETEiJ_G0017896) #29	Npepps (MGP_SPRETEiJ_G0017897) #30	Mrpl45 (MGP_SPRETEiJ_G0017898) #31	Gpr179 (MGP_SPRETEiJ_G0017899) #32	Socs7 (MGP_SPRETEiJ_G0017900) #33	Arhgap23 (MGP_SPRETEiJ_G0017901) #34	MGP_SPRETEiJ_G0017902	Srcin1 (MGP_SPRETEiJ_G0017903) #35	Epop (MGP_SPRETEiJ_G0017904) #37
Steppe mouse	MODERN SPECIES	3291	Hoxb4 (ENSMSIG00000018777) #9	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771)	Hoxb2 (ENSMSIG00000018769) #11	Hoxb1 (ENSMSIG00000018752) #12	Skap1 (ENSMSIG00000018601) #13	Snx11 (ENSMSIG00000018546) #15	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) #16	Nfe2l1 (ENSMSIG00000018374) #17	Copz2 (ENSMSIG00000018337) #18	Cdk5rap3 (ENSMSIG00000018309) #19	ENSMSIG00000018270	ENSMSIG00000018267 #20	Sp2 (ENSMSIG00000018237) #21	Sp6 (ENSMSIG00000018223) #22	Scrn2 (ENSMSIG00000018202) #23	Lrrc46 (ENSMSIG00000018171) #24	Mrpl10 (ENSMSIG00000018160) #25	Osbpl7 (ENSMSIG00000018093) #26	Tbx21 (ENSMSIG00000018069) #27	Tbkbp1 (ENSMSIG00000018040) #28	Kpnb1 (ENSMSIG00000017971) #29	Npepps (ENSMSIG00000017886) #30	Mrpl45 (ENSMSIG00000017873) #31	Gpr179 (ENSMSIG00000017852) #32	Socs7 (ENSMSIG00000017810) #33	ENSMSIG00000017794	Arhgap23 (ENSMSIG00000017701) #34	Srcin1 (ENSMSIG00000017360) #35	Epop (ENSMSIG00000017344) #37
Ryukyu mouse	MODERN SPECIES	2	Hoxb5 (MGP_CAROLIEiJ_G0017028) #8	Hoxb4 (MGP_CAROLIEiJ_G0017029) #9	Hoxb3 (MGP_CAROLIEiJ_G0017030)	Hoxb2 (MGP_CAROLIEiJ_G0017031) #11	Hoxb1 (MGP_CAROLIEiJ_G0017032) #12	Skap1 (MGP_CAROLIEiJ_G0017033) #13	Snx11 (MGP_CAROLIEiJ_G0017034) #15	Cbx1 (MGP_CAROLIEiJ_G0017035) #16	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #17	Copz2 (MGP_CAROLIEiJ_G0017038) #18	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #19	Prr15l (MGP_CAROLIEiJ_G0017040)	Pnpo (MGP_CAROLIEiJ_G0017041) #20	Sp2 (MGP_CAROLIEiJ_G0017042) #21	Sp6 (MGP_CAROLIEiJ_G0017043) #22	MGP_CAROLIEiJ_G0017044 #23	Lrrc46 (MGP_CAROLIEiJ_G0017045) #24	Mrpl10 (MGP_CAROLIEiJ_G0017046) #25	Osbpl7 (MGP_CAROLIEiJ_G0017047) #26	Tbx21 (MGP_CAROLIEiJ_G0017048) #27	Tbkbp1 (MGP_CAROLIEiJ_G0017049) #28	Kpnb1 (MGP_CAROLIEiJ_G0017050) #29	Npepps (MGP_CAROLIEiJ_G0017051) #30	Mrpl45 (MGP_CAROLIEiJ_G0017052) #31	Gpr179 (MGP_CAROLIEiJ_G0017053) #32	Socs7 (MGP_CAROLIEiJ_G0017054) #33	Arhgap23 (MGP_CAROLIEiJ_G0017055) #34	MGP_CAROLIEiJ_G0017056	Srcin1 (MGP_CAROLIEiJ_G0017057) #35	Epop (MGP_CAROLIEiJ_G0017058) #37
Shrew mouse	MODERN SPECIES	5	Hoxb5 (MGP_PahariEiJ_G0018158) #8	Hoxb4 (MGP_PahariEiJ_G0018159) #9	Hoxb3 (MGP_PahariEiJ_G0018160)	Hoxb2 (MGP_PahariEiJ_G0018161) #11	Hoxb1 (MGP_PahariEiJ_G0018162) #12	Skap1 (MGP_PahariEiJ_G0018163) #13	Snx11 (MGP_PahariEiJ_G0018164) #15	Cbx1 (MGP_PahariEiJ_G0018165) #16	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #17	Copz2 (MGP_PahariEiJ_G0018168) #18	Cdk5rap3 (MGP_PahariEiJ_G0018169) #19	Prr15l (MGP_PahariEiJ_G0018170)	Pnpo (MGP_PahariEiJ_G0018171) #20	Sp2 (MGP_PahariEiJ_G0018172) #21	Sp6 (MGP_PahariEiJ_G0018173) #22	Scrn2 (MGP_PahariEiJ_G0018174) #23	Lrrc46 (MGP_PahariEiJ_G0018175) #24	Mrpl10 (MGP_PahariEiJ_G0018176) #25	Osbpl7 (MGP_PahariEiJ_G0018177) #26	Tbx21 (MGP_PahariEiJ_G0018178) #27	Tbkbp1 (MGP_PahariEiJ_G0018179) #28	Npepps (MGP_PahariEiJ_G0018180) #30	MGP_PahariEiJ_G0018181 #31	Gpr179 (MGP_PahariEiJ_G0018182) #32	Socs7 (MGP_PahariEiJ_G0018183) #33	Arhgap23 (MGP_PahariEiJ_G0018184) #34	MGP_PahariEiJ_G0018185	Srcin1 (MGP_PahariEiJ_G0018186) #35	Epop (MGP_PahariEiJ_G0018187) #37	Mllt6 (MGP_PahariEiJ_G0018188)
Rat	MODERN SPECIES	1	Hoxb6 (ENSRNOG00000007823) #7	Hoxb5 (ENSRNOG00000008010) #8	Hoxb4 (ENSRNOG00000008191) #9	Hoxb3 (ENSRNOG00000008313)	Hoxb2 (ENSRNOG00000008365) #11	Hoxb1 (ENSRNOG00000008506) #12	Skap1 (ENSRNOG00000023881) #13	Snx11 (ENSRNOG00000008642) #15	Cbx1 (ENSRNOG00000008689) #16	Nfe2l1 (ENSRNOG00000008830) #17	Copz2 (ENSRNOG00000009225) #18	Cdk5rap3 (ENSRNOG00000048747) #19	Prr15l (ENSRNOG00000049162)	Pnpo (ENSRNOG00000046493) #20	Sp2 (ENSRNOG00000010492) #21	Sp6 (ENSRNOG00000023551) #22	Scrn2 (ENSRNOG00000010214) #23	Lrrc46 (ENSRNOG00000009902) #24	Mrpl10 (ENSRNOG00000009567) #25	Osbpl7 (ENSRNOG00000009473) #26	Tbx21 (ENSRNOG00000009427) #27	Tbkbp1 (ENSRNOG00000009370) #28	Kpnb1 (ENSRNOG00000009275) #29	AABR07030425.1 (ENSRNOG00000056057)	Npepps (ENSRNOG00000023095) #30	Mrpl45 (ENSRNOG00000010540) #31	Gpr179 (ENSRNOG00000029245) #32	Socs7 (ENSRNOG00000059008) #33	Arhgap23 (ENSRNOG00000022771) #34	Srcin1 (ENSRNOG00000011475) #35	Epop (ENSRNOG00000048187) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hoxb5 (ENSNGAG00000023238) #8	Hoxb4 (ENSNGAG00000021768) #9	Hoxb3 (ENSNGAG00000020227)	Hoxb2 (ENSNGAG00000019089) #11	Hoxb1 (ENSNGAG00000018593) #12	Skap1 (ENSNGAG00000012571) #13	Snx11 (ENSNGAG00000010446) #15	Cbx1 (ENSNGAG00000006760) #16	Nfe2l1 (ENSNGAG00000000736) #17	Copz2 (ENSNGAG00000023713) #18	ENSNGAG00000000747 #19	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432)	Pnpo (ENSNGAG00000020016) #20	Sp2 (ENSNGAG00000017612) #21	Sp6 (ENSNGAG00000015868) #22	Scrn2 (ENSNGAG00000023806) #23	Lrrc46 (ENSNGAG00000022557) #24	Mrpl10 (ENSNGAG00000022195) #25	Osbpl7 (ENSNGAG00000019382) #26	Tbx21 (ENSNGAG00000002476) #27	Tbkbp1 (ENSNGAG00000021163) #28	Kpnb1 (ENSNGAG00000017610) #29	Plekhm1 (ENSNGAG00000013194)	Arhgap27 (ENSNGAG00000021239)	Map3k14 (ENSNGAG00000018057)	Efcab15 (ENSNGAG00000014012)	Fmnl1 (ENSNGAG00000018866)	Hexim2 (ENSNGAG00000008154)	Hexim1 (ENSNGAG00000004671)	Acbd4 (ENSNGAG00000003147)
Lesser Egyptian jerboa	MODERN SPECIES	56	Hoxb6 (ENSJJAG00000000997) #7	Hoxb5 (ENSJJAG00000000763) #8	Hoxb4 (ENSJJAG00000002642) #9	Hoxb3 (ENSJJAG00000007804)	Hoxb2 (ENSJJAG00000009465) #11	Hoxb1 (ENSJJAG00000001073) #12	Skap1 (ENSJJAG00000003458) #13	ENSJJAG00000005754 #15	ENSJJAG00000007753 #16	Nfe2l1 (ENSJJAG00000006432) #17	Copz2 (ENSJJAG00000001025) #18	ENSJJAG00000002511 #19	Prr15l (ENSJJAG00000006478)	Pnpo (ENSJJAG00000023608) #20	Sp2 (ENSJJAG00000003061) #21	Sp6 (ENSJJAG00000006452) #22	Scrn2 (ENSJJAG00000023635) #23	Lrrc46 (ENSJJAG00000010412) #24	Mrpl10 (ENSJJAG00000004046) #25	Osbpl7 (ENSJJAG00000004477) #26	Tbx21 (ENSJJAG00000000813) #27	ENSJJAG00000010141 #28	Kpnb1 (ENSJJAG00000010909) #29	Npepps (ENSJJAG00000005423) #30	ENSJJAG00000009505	ENSJJAG00000002004 #32	Socs7 (ENSJJAG00000007563) #33	ENSJJAG00000002946 #34	Srcin1 (ENSJJAG00000000573) #35	Epop (ENSJJAG00000023234) #37	Mllt6 (ENSJJAG00000000902)
Kangaroo rat	MODERN SPECIES	326	Hoxb8 (ENSDORG00000007906)	Hoxb7 (ENSDORG00000007905)	Hoxb6 (ENSDORG00000023877) #7	Hoxb5 (ENSDORG00000007900) #8	Hoxb4 (ENSDORG00000007899) #9	Hoxb3 (ENSDORG00000007898)	Hoxb2 (ENSDORG00000007897) #11	Hoxb1 (ENSDORG00000007896) #12	Snx11 (ENSDORG00000029078) #15	Cbx1 (ENSDORG00000026399) #16	Nfe2l1 (ENSDORG00000000715) #17	Copz2 (ENSDORG00000013441) #18	Prr15l (ENSDORG00000027427)	Pnpo (ENSDORG00000014110) #20	Sp2 (ENSDORG00000014109) #21	Sp6 (ENSDORG00000026201) #22	Scrn2 (ENSDORG00000002361) #23	Osbpl7 (ENSDORG00000002354) #26	Tbx21 (ENSDORG00000013302) #27	Npepps (ENSDORG00000009627) #30	Socs7 (ENSDORG00000028979) #33	ENSDORG00000007713 #34	Srcin1 (ENSDORG00000007714) #35	Mllt6 (ENSDORG00000016578)	Cisd3 (ENSDORG00000029439)	Pcgf2 (ENSDORG00000016581)	Psmb3 (ENSDORG00000009809)	Pip4k2b (ENSDORG00000009810)	Cwc25 (ENSDORG00000003061)	1700001P01Rik (ENSDORG00000013037)	Rpl23 (ENSDORG00000001372)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.o #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.o #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Arctic ground squirrel	MODERN SPECIES	46	HOXB6 (ENSUPAG00010006317) #7	HOXB5 (ENSUPAG00010006320) #8	HOXB4 (ENSUPAG00010006325) #9	HOXB3 (ENSUPAG00010006328)	HOXB2 (ENSUPAG00010006336) #11	HOXB1 (ENSUPAG00010006340) #12	SKAP1 (ENSUPAG00010006345) #13	SNX11 (ENSUPAG00010006370) #15	CBX1 (ENSUPAG00010006381) #16	NFE2L1 (ENSUPAG00010006396) #17	COPZ2 (ENSUPAG00010006455) #18	CDK5RAP3 (ENSUPAG00010006466) #19	PRR15L (ENSUPAG00010006473)	PNPO (ENSUPAG00010006483) #20	SP2 (ENSUPAG00010006507) #21	SP6 (ENSUPAG00010006522) #22	SCRN2 (ENSUPAG00010006526) #23	LRRC46 (ENSUPAG00010006533) #24	MRPL10 (ENSUPAG00010006539) #25	OSBPL7 (ENSUPAG00010006545) #26	TBX21 (ENSUPAG00010006582) #27	TBKBP1 (ENSUPAG00010006591) #28	KPNB1 (ENSUPAG00010006624) #29	NPEPPS (ENSUPAG00010006649) #30	ENSUPAG00010006685 #31	GPR179 (ENSUPAG00010006698) #32	SOCS7 (ENSUPAG00010006716) #33	ARHGAP23 (ENSUPAG00010006763) #34	SRCIN1 (ENSUPAG00010006849) #35	MLLT6 (ENSUPAG00010006969)	CISD3 (ENSUPAG00010007056)
Squirrel	MODERN SPECIES	90	HOXB6 (ENSSTOG00000020303) #7	HOXB5 (ENSSTOG00000009740) #8	HOXB4 (ENSSTOG00000009734) #9	HOXB3 (ENSSTOG00000025093)	HOXB2 (ENSSTOG00000023586) #11	HOXB1 (ENSSTOG00000028630) #12	SKAP1 (ENSSTOG00000013692) #13	SNX11 (ENSSTOG00000013684) #15	CBX1 (ENSSTOG00000023986) #16	NFE2L1 (ENSSTOG00000013664) #17	ENSSTOG00000027550 #18	CDK5RAP3 (ENSSTOG00000006244) #19	PRR15L (ENSSTOG00000006235)	PNPO (ENSSTOG00000006221) #20	SP2 (ENSSTOG00000015926) #21	SP6 (ENSSTOG00000001607) #22	SCRN2 (ENSSTOG00000027108) #23	LRRC46 (ENSSTOG00000002068) #24	MRPL10 (ENSSTOG00000024617) #25	OSBPL7 (ENSSTOG00000001636) #26	TBX21 (ENSSTOG00000001626) #27	TBKBP1 (ENSSTOG00000023713) #28	KPNB1 (ENSSTOG00000007896) #29	NPEPPS (ENSSTOG00000004901) #30	ENSSTOG00000000304 #31	GPR179 (ENSSTOG00000024299) #32	SOCS7 (ENSSTOG00000000068) #33	ARHGAP23 (ENSSTOG00000029240) #34	SRCIN1 (ENSSTOG00000028994) #35	EPOP (ENSSTOG00000022964) #37	MLLT6 (ENSSTOG00000014229)
Alpin marmot	MODERN SPECIES	126													PRR15L (ENSMMMG00000020424)	PNPO (ENSMMMG00000020407) #20	SP2 (ENSMMMG00000020394) #21	SP6 (ENSMMMG00000020386) #22	SCRN2 (ENSMMMG00000020372) #23	LRRC46 (ENSMMMG00000020356) #24	MRPL10 (ENSMMMG00000020352) #25	OSBPL7 (ENSMMMG00000020336) #26	ENSMMMG00000020333	TBX21 (ENSMMMG00000020329) #27	ENSMMMG00000020322 #28	KPNB1 (ENSMMMG00000020318) #29	NPEPPS (ENSMMMG00000020297) #30	ENSMMMG00000020288 #31	GPR179 (ENSMMMG00000020262) #32	SOCS7 (ENSMMMG00000020236) #33	ARHGAP23 (ENSMMMG00000020178) #34	ENSMMMG00000020172	SRCIN1 (ENSMMMG00000020155) #35
Eurasian red squirrel	MODERN SPECIES	12	HOXB6 (ENSSVLG00005019586) #7	HOXB5 (ENSSVLG00005019546) #8	HOXB4 (ENSSVLG00005019455) #9	HOXB3 (ENSSVLG00005019421)	HOXB2 (ENSSVLG00005019378) #11	HOXB1 (ENSSVLG00005019304) #12	SKAP1 (ENSSVLG00005019232) #13	SNX11 (ENSSVLG00005019122) #15	CBX1 (ENSSVLG00005019034) #16	NFE2L1 (ENSSVLG00005018798) #17	COPZ2 (ENSSVLG00005018641) #18	CDK5RAP3 (ENSSVLG00005018459) #19	PRR15L (ENSSVLG00005018399)	PNPO (ENSSVLG00005018295) #20	ENSSVLG00005018218 #21	SP6 (ENSSVLG00005018194) #22	SCRN2 (ENSSVLG00005018077) #23	LRRC46 (ENSSVLG00005018036) #24	MRPL10 (ENSSVLG00005017985) #25	OSBPL7 (ENSSVLG00005017757) #26	TBX21 (ENSSVLG00005017653) #27	TBKBP1 (ENSSVLG00005017602) #28	KPNB1 (ENSSVLG00005017557) #29	NPEPPS (ENSSVLG00005017198) #30	MRPL45 (ENSSVLG00005017084) #31	ENSSVLG00005017021	GPR179 (ENSSVLG00005016761) #32	SOCS7 (ENSSVLG00005016676) #33	ARHGAP23 (ENSSVLG00005016593) #34	SRCIN1 (ENSSVLG00005016103) #35	ENSSVLG00005016032
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Guinea pig	MODERN SPECIES	53	HOXB6 (ENSCPOG00000040707) #7	HOXB5 (ENSCPOG00000030746) #8	ENSCPOG00000010105	ENSCPOG00000010107	HOXB2 (ENSCPOG00000035468) #11	HOXB1 (ENSCPOG00000022183) #12	SKAP1 (ENSCPOG00000022118) #13	SNX11 (ENSCPOG00000020234) #15	CBX1 (ENSCPOG00000034435) #16	NFE2L1 (ENSCPOG00000030805) #17	COPZ2 (ENSCPOG00000019500) #18	CDK5RAP3 (ENSCPOG00000007275) #19	PRR15L (ENSCPOG00000035567)	PNPO (ENSCPOG00000003187) #20	SP2 (ENSCPOG00000014943) #21	SP6 (ENSCPOG00000007638) #22	SCRN2 (ENSCPOG00000006929) #23	LRRC46 (ENSCPOG00000006925) #24	MRPL10 (ENSCPOG00000037104) #25	OSBPL7 (ENSCPOG00000006914) #26	TBX21 (ENSCPOG00000026273) #27	TBKBP1 (ENSCPOG00000036345) #28	KPNB1 (ENSCPOG00000006566) #29	NPEPPS (ENSCPOG00000006559) #30	MRPL45 (ENSCPOG00000001574) #31	GPR179 (ENSCPOG00000027503) #32	SOCS7 (ENSCPOG00000011473) #33	ARHGAP23 (ENSCPOG00000025821) #34	SRCIN1 (ENSCPOG00000022478) #35	EPOP (ENSCPOG00000026798) #37	MLLT6 (ENSCPOG00000006561)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000158572	ENSGT00390000004574
Degu	MODERN SPECIES	97	HOXB6 (ENSODEG00000016988) #7	HOXB5 (ENSODEG00000017253) #8	HOXB4 (ENSODEG00000017038) #9	HOXB3 (ENSODEG00000017116)	HOXB2 (ENSODEG00000017153) #11	HOXB1 (ENSODEG00000017050) #12	SKAP1 (ENSODEG00000017533) #13	SNX11 (ENSODEG00000017458) #15	CBX1 (ENSODEG00000017272) #16	NFE2L1 (ENSODEG00000017348) #17	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #18	ENSODEG00000017229 #19	PNPO (ENSODEG00000017424) #20	SP2 (ENSODEG00000017126) #21	SP6 (ENSODEG00000017625) #22	SCRN2 (ENSODEG00000017395) #23	LRRC46 (ENSODEG00000017367) #24	MRPL10 (ENSODEG00000017536) #25	OSBPL7 (ENSODEG00000017364) #26	TBX21 (ENSODEG00000017610) #27	ENSODEG00000017455 #28	KPNB1 (ENSODEG00000017287) #29	NPEPPS (ENSODEG00000017337) #30	SOCS7 (ENSODEG00000017559) #33	MRPL45 (ENSODEG00000017631) #31	GPR179 (ENSODEG00000017327) #32	ARHGAP23 (ENSODEG00000017612) #34	SRCIN1 (ENSODEG00000017506) #35	MLLT6 (ENSODEG00000017604)	CISD3 (ENSODEG00000017593)
Long-tailed chinchilla	MODERN SPECIES	158	HOXB6 (ENSCLAG00000015524) #7	HOXB5 (ENSCLAG00000014374) #8	HOXB4 (ENSCLAG00000014725) #9	HOXB3 (ENSCLAG00000015322)	HOXB2 (ENSCLAG00000015271) #11	HOXB1 (ENSCLAG00000013047) #12	SKAP1 (ENSCLAG00000015423) #13	SNX11 (ENSCLAG00000015837) #15	CBX1 (ENSCLAG00000013587) #16	NFE2L1 (ENSCLAG00000014836) #17	COPZ2 (ENSCLAG00000013544) #18	CDK5RAP3 (ENSCLAG00000012292) #19	PRR15L (ENSCLAG00000017903)	PNPO (ENSCLAG00000013871) #20	SP2 (ENSCLAG00000014115) #21	SP6 (ENSCLAG00000016276) #22	LRRC46 (ENSCLAG00000016713) #24	SCRN2 (ENSCLAG00000013965) #23	MRPL10 (ENSCLAG00000015400) #25	OSBPL7 (ENSCLAG00000014839) #26	TBX21 (ENSCLAG00000015235) #27	ENSCLAG00000015338 #28	KPNB1 (ENSCLAG00000017091) #29	NPEPPS (ENSCLAG00000016661) #30	MRPL45 (ENSCLAG00000015324) #31	GPR179 (ENSCLAG00000014803) #32	SOCS7 (ENSCLAG00000015232) #33	ARHGAP23 (ENSCLAG00000014290) #34	SRCIN1 (ENSCLAG00000015589) #35	MLLT6 (ENSCLAG00000013781)	CISD3 (ENSCLAG00000014350)
Naked mole-rat female	MODERN SPECIES	12	HOXB6 (ENSHGLG00000012400) #7	HOXB5 (ENSHGLG00000039265) #8	HOXB4 (ENSHGLG00000034075) #9	HOXB3 (ENSHGLG00000010686)	HOXB2 (ENSHGLG00000010090) #11	HOXB1 (ENSHGLG00000009781) #12	SKAP1 (ENSHGLG00000014563) #13	SNX11 (ENSHGLG00000016837) #15	CBX1 (ENSHGLG00000013574) #16	NFE2L1 (ENSHGLG00000012592) #17	COPZ2 (ENSHGLG00000018543) #18	CDK5RAP3 (ENSHGLG00000019464) #19	PRR15L (ENSHGLG00000014696)	PNPO (ENSHGLG00000013159) #20	SP2 (ENSHGLG00000009902) #21	SP6 (ENSHGLG00000021113) #22	SCRN2 (ENSHGLG00000041375) #23	LRRC46 (ENSHGLG00000035931) #24	MRPL10 (ENSHGLG00000048399) #25	OSBPL7 (ENSHGLG00000012525) #26	TBX21 (ENSHGLG00000012216) #27	TBKBP1 (ENSHGLG00000049817) #28	KPNB1 (ENSHGLG00000014138) #29	ENSHGLG00000012466 #30	ENSHGLG00000010863 #31	ENSHGLG00000050482	ENSHGLG00000041148 #32	SOCS7 (ENSHGLG00000035093) #33	ARHGAP23 (ENSHGLG00000012944) #34	SRCIN1 (ENSHGLG00000010912) #35	ENSHGLG00000021180
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000161529	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.dc #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000158572	ENSGT00390000004574
Rabbit	MODERN SPECIES	10	HOXB8 (ENSOCUG00000029186)	HOXB5 (ENSOCUG00000023093) #8	HOXB6 (ENSOCUG00000011560) #7	HOXB3 (ENSOCUG00000023337)	HOXB2 (ENSOCUG00000024951) #11	HOXB1 (ENSOCUG00000001720) #12	SKAP1 (ENSOCUG00000001717) #13	SNX11 (ENSOCUG00000002309) #15	CBX1 (ENSOCUG00000008021) #16	NFE2L1 (ENSOCUG00000022298) #17	COPZ2 (ENSOCUG00000001802) #18	CDK5RAP3 (ENSOCUG00000012325) #19	PRR15L (ENSOCUG00000017489)	PNPO (ENSOCUG00000017484) #20	SP2 (ENSOCUG00000027415) #21	SP6 (ENSOCUG00000023482) #22	SCRN2 (ENSOCUG00000009457) #23	LRRC46 (ENSOCUG00000009453) #24	MRPL10 (ENSOCUG00000009452) #25	OSBPL7 (ENSOCUG00000009447) #26	TBX21 (ENSOCUG00000012907) #27	TBKBP1 (ENSOCUG00000014771) #28	KPNB1 (ENSOCUG00000015425) #29	NPEPPS (ENSOCUG00000015748) #30	MRPL45 (ENSOCUG00000015690) #31	GPR179 (ENSOCUG00000015704) #32	SOCS7 (ENSOCUG00000015724) #33	ARHGAP23 (ENSOCUG00000011758) #34	SRCIN1 (ENSOCUG00000005505) #35	MLLT6 (ENSOCUG00000027604)	CISD3 (ENSOCUG00000022623)
Pika	MODERN SPECIES	633													CDK5RAP3 (ENSOPRG00000004107) #19	PNPO (ENSOPRG00000004080) #20	SP2 (ENSOPRG00000004048) #21	SP6 (ENSOPRG00000004019) #22	SCRN2 (ENSOPRG00000003992) #23	LRRC46 (ENSOPRG00000003963) #24	MRPL10 (ENSOPRG00000003949) #25	OSBPL7 (ENSOPRG00000003904) #26	TBX21 (ENSOPRG00000003888) #27	TBKBP1 (ENSOPRG00000003843) #28	KPNB1 (ENSOPRG00000003795) #29	NPEPPS (ENSOPRG00000003735) #30
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Suina	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #35
Pig	MODERN SPECIES	3	HOXB6 (ENSSSCG00000017539) #7	HOXB5 (ENSSSCG00000017540) #8	HOXB4 (ENSSSCG00000017535) #9	HOXB3 (ENSSSCG00000017534)	HOXB2 (ENSSSCG00000017533) #11	HOXB1 (ENSSSCG00000017532) #12	SKAP1 (ENSSSCG00000017527) #13	SNX11 (ENSSSCG00000017528) #15	CBX1 (ENSSSCG00000017529) #16	NFE2L1 (ENSSSCG00000017525) #17	COPZ2 (ENSSSCG00000017526) #18	CDK5RAP3 (ENSSSCG00000017524) #19	PRR15L (ENSSSCG00000054179)	PNPO (ENSSSCG00000032782) #20	SP2 (ENSSSCG00000017516) #21	SP6 (ENSSSCG00000017522) #22	SCRN2 (ENSSSCG00000017521) #23	LRRC46 (ENSSSCG00000017520) #24	MRPL10 (ENSSSCG00000017519) #25	OSBPL7 (ENSSSCG00000017518) #26	TBX21 (ENSSSCG00000017517) #27	ENSSSCG00000057498 #28	KPNB1 (ENSSSCG00000017514) #29	NPEPPS (ENSSSCG00000017513) #30	MRPL45 (ENSSSCG00000023263) #31	GPR179 (ENSSSCG00000020884) #32	SOCS7 (ENSSSCG00000018057) #33	ARHGAP23 (ENSSSCG00000018058) #34	ENSSSCG00000045701	ENSSSCG00000046446	SRCIN1 (ENSSSCG00000018056) #35
Chacoan peccary	MODERN SPECIES	145	HOXB6 (ENSCWAG00000022069) #7	HOXB5 (ENSCWAG00000022071) #8	HOXB4 (ENSCWAG00000022074) #9	HOXB3 (ENSCWAG00000022077)	HOXB2 (ENSCWAG00000022078) #11	HOXB1 (ENSCWAG00000022080) #12	SKAP1 (ENSCWAG00000000046) #13	SNX11 (ENSCWAG00000000070) #15	CBX1 (ENSCWAG00000000121) #16	NFE2L1 (ENSCWAG00000000185) #17	COPZ2 (ENSCWAG00000000341) #18	CDK5RAP3 (ENSCWAG00000000377) #19	PRR15L (ENSCWAG00000000410)	PNPO (ENSCWAG00000000427) #20	SP2 (ENSCWAG00000000474) #21	SP6 (ENSCWAG00000000502) #22	SCRN2 (ENSCWAG00000000520) #23	LRRC46 (ENSCWAG00000000570) #24	MRPL10 (ENSCWAG00000000589) #25	OSBPL7 (ENSCWAG00000000623) #26	TBX21 (ENSCWAG00000000709) #27	TBKBP1 (ENSCWAG00000000726) #28	KPNB1 (ENSCWAG00000000755) #29	NPEPPS (ENSCWAG00000000826) #30	MRPL45 (ENSCWAG00000000905) #31	GPR179 (ENSCWAG00000000941) #32	SOCS7 (ENSCWAG00000001002) #33	ARHGAP23 (ENSCWAG00000001049) #34	SRCIN1 (ENSCWAG00000001149) #35	EPOP (ENSCWAG00000001220) #37	MLLT6 (ENSCWAG00000001240)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00860000135964	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Narwhal	MODERN SPECIES	316	HOXB6 (ENSMMNG00015016215) #7	HOXB5 (ENSMMNG00015016235) #8	HOXB4 (ENSMMNG00015016252) #9	HOXB3 (ENSMMNG00015016287)	HOXB2 (ENSMMNG00015016324) #11	HOXB1 (ENSMMNG00015016356) #12	SKAP1 (ENSMMNG00015016386) #13	SNX11 (ENSMMNG00015016452) #15	CBX1 (ENSMMNG00015016582) #16	NFE2L1 (ENSMMNG00015016634) #17	COPZ2 (ENSMMNG00015016743) #18	CDK5RAP3 (ENSMMNG00015016820) #19	PRR15L (ENSMMNG00015016868)	PNPO (ENSMMNG00015016895) #20	SP2 (ENSMMNG00015016948) #21	SP6 (ENSMMNG00015016969) #22	SCRN2 (ENSMMNG00015016985) #23	LRRC46 (ENSMMNG00015017038) #24	MRPL10 (ENSMMNG00015017084) #25	OSBPL7 (ENSMMNG00015017115) #26	TBX21 (ENSMMNG00015017166) #27	TBKBP1 (ENSMMNG00015017190) #28	KPNB1 (ENSMMNG00015017215) #29	NPEPPS (ENSMMNG00015017277) #30	MRPL45 (ENSMMNG00015017435) #31	GPR179 (ENSMMNG00015017480) #32	SOCS7 (ENSMMNG00015017571) #33	ARHGAP23 (ENSMMNG00015017676) #34	SRCIN1 (ENSMMNG00015017795) #35	ENSMMNG00015017965	EPOP (ENSMMNG00015017989) #37
Beluga whale	MODERN SPECIES	26	HOXB5 (ENSDLEG00000004826) #8	HOXB4 (ENSDLEG00000004820) #9	HOXB3 (ENSDLEG00000004817)	HOXB2 (ENSDLEG00000004813) #11	HOXB1 (ENSDLEG00000004807) #12	SKAP1 (ENSDLEG00000004779) #13	SNX11 (ENSDLEG00000004765) #15	CBX1 (ENSDLEG00000004754) ##16	NFE2L1 (ENSDLEG00000004744) #17	ENSDLEG00000004734	COPZ2 (ENSDLEG00000004721) #18	CDK5RAP3 (ENSDLEG00000004709) #19	PRR15L (ENSDLEG00000004704)	PNPO (ENSDLEG00000004701) #20	SP2 (ENSDLEG00000004697) #21	SP6 (ENSDLEG00000004694) #22	SCRN2 (ENSDLEG00000004688) #23	ENSDLEG00000004684	MRPL10 (ENSDLEG00000004678) #25	OSBPL7 (ENSDLEG00000004366) #26	TBX21 (ENSDLEG00000004247) #27	TBKBP1 (ENSDLEG00000004240) #28	KPNB1 (ENSDLEG00000004223) #29	NPEPPS (ENSDLEG00000004076) #30	MRPL45 (ENSDLEG00000004037) #31	GPR179 (ENSDLEG00000004032) #32	SOCS7 (ENSDLEG00000004014) #33	ARHGAP23 (ENSDLEG00000003989) #34	ENSDLEG00000003976	SRCIN1 (ENSDLEG00000003944) #35	ENSDLEG00000003932
Vaquita	MODERN SPECIES	12	HOXB6 (ENSPSNG00000017525) #7	HOXB5 (ENSPSNG00000017559) #8	HOXB4 (ENSPSNG00000017604) #9	HOXB3 (ENSPSNG00000017636)	HOXB2 (ENSPSNG00000017708) #11	HOXB1 (ENSPSNG00000017728) #12	SKAP1 (ENSPSNG00000017760) #13	SNX11 (ENSPSNG00000017889) #15	ENSPSNG00000017984 #16	NFE2L1 (ENSPSNG00000018052) #17	COPZ2 (ENSPSNG00000018262) #18	CDK5RAP3 (ENSPSNG00000018321) #19	PRR15L (ENSPSNG00000018399)	PNPO (ENSPSNG00000018423) #20	SP2 (ENSPSNG00000018528) #21	SP6 (ENSPSNG00000018568) #22	SCRN2 (ENSPSNG00000018588) #23	LRRC46 (ENSPSNG00000018676) #24	ENSPSNG00000018757	OSBPL7 (ENSPSNG00000018799) #26	TBX21 (ENSPSNG00000018852) #27	TBKBP1 (ENSPSNG00000018911) #28	KPNB1 (ENSPSNG00000018946) #29	NPEPPS (ENSPSNG00000019016) #30	MRPL45 (ENSPSNG00000019227) #31	GPR179 (ENSPSNG00000019300) #32	SOCS7 (ENSPSNG00000019467) #33	ARHGAP23 (ENSPSNG00000019589) #34	SRCIN1 (ENSPSNG00000019720) #35	ENSPSNG00000020092	EPOP (ENSPSNG00000020118) #37
Dolphin	MODERN SPECIES	6789														PNPO (ENSTTRG00000012493) #20	SP2 (ENSTTRG00000012483) #21	SP6 (ENSTTRG00000012481) #22	SCRN2 (ENSTTRG00000012472) #23	LRRC46 (ENSTTRG00000012463) #24	MRPL10 (ENSTTRG00000012452) #25	OSBPL7 (ENSTTRG00000012411) #26
Sperm whale	MODERN SPECIES	389																SP6 (ENSPCTG00005015038) #22	LRRC46 (ENSPCTG00005014931) #24	SCRN2 (ENSPCTG00005014718) #23	OSBPL7 (ENSPCTG00005014620) #26
Blue whale	MODERN SPECIES	12	HOXB6 (ENSBMSG00010017746) #7	HOXB5 (ENSBMSG00010017772) #8	HOXB4 (ENSBMSG00010017814) #9	HOXB3 (ENSBMSG00010017838)	HOXB2 (ENSBMSG00010017860) #11	HOXB1 (ENSBMSG00010017892) #12	SKAP1 (ENSBMSG00010017921) #13	SNX11 (ENSBMSG00010018006) #15	CBX1 (ENSBMSG00010018099) #16	NFE2L1 (ENSBMSG00010018163) #17	COPZ2 (ENSBMSG00010018306) #18	CDK5RAP3 (ENSBMSG00010018481) #19	PRR15L (ENSBMSG00010018513)	PNPO (ENSBMSG00010018544) #20	SP2 (ENSBMSG00010018607) #21	SP6 (ENSBMSG00010018628) #22	ENSBMSG00010018650	ENSBMSG00010018673	ENSBMSG00010018688	ENSBMSG00010018708	ENSBMSG00010018759	ENSBMSG00010018791	CA10 (ENSBMSG00010018845)	ENSBMSG00010018906	KIF2B (ENSBMSG00010018945)	ENSBMSG00010019021	COX11 (ENSBMSG00010019249)	STXBP4 (ENSBMSG00010019312)	ENSBMSG00010019451	ENSBMSG00010019467	MMD (ENSBMSG00010019519)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00950000185410	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000154688.b.j	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Goat	MODERN SPECIES	10	HOXB4 (ENSCHIG00000025323) #9	HOXB3 (ENSCHIG00000013978)	HOXB2 (ENSCHIG00000025836) #11	HOXB1 (ENSCHIG00000017872) #12	ENSCHIG00000010180	ENSCHIG00000015920 #13	ENSCHIG00000026878 #13	SNX11 (ENSCHIG00000017547) #15	CBX1 (ENSCHIG00000010985) #16	NFE2L1 (ENSCHIG00000015427) #17	COPZ2 (ENSCHIG00000026544) #18	CDK5RAP3 (ENSCHIG00000025420) #19	PRR15L (ENSCHIG00000008261)	PNPO (ENSCHIG00000004606) #20	SP2 (ENSCHIG00000018648) #21	SP6 (ENSCHIG00000009897) #22	SCRN2 (ENSCHIG00000026802) #23	LRRC46 (ENSCHIG00000015497) #24	MRPL10 (ENSCHIG00000027033) #25	OSBPL7 (ENSCHIG00000023060) #26	TBX21 (ENSCHIG00000021993) #27	TBKBP1 (ENSCHIG00000016860) #28	KPNB1 (ENSCHIG00000014896) #29	NPEPPS (ENSCHIG00000022782) #30	MRPL45 (ENSCHIG00000014110) #31	GPR179 (ENSCHIG00000026098) #32	SOCS7 (ENSCHIG00000012449) #33	ARHGAP23 (ENSCHIG00000023996) #34	SRCIN1 (ENSCHIG00000022297) #35	ENSCHIG00000019374	EPOP (ENSCHIG00000008501) #37
Rambouillet Sheep	MODERN SPECIES	2	HOXB6 (ENSOARG00020022021) #7	HOXB5 (ENSOARG00020022004) #8	HOXB4 (ENSOARG00020021954) #9	HOXB3 (ENSOARG00020021943)	HOXB2 (ENSOARG00020021907) #11	HOXB1 (ENSOARG00020021886) #12	SKAP1 (ENSOARG00020021817) #13	SNX11 (ENSOARG00020021783) #15	CBX1 (ENSOARG00020021741) #16	NFE2L1 (ENSOARG00020021460) #17	COPZ2 (ENSOARG00020021377) #18	CDK5RAP3 (ENSOARG00020021339) #19	PRR15L (ENSOARG00020021319)	PNPO (ENSOARG00020021017) #20	SP2 (ENSOARG00020020972) #21	SP6 (ENSOARG00020020944) #22	SCRN2 (ENSOARG00020020770) #23	LRRC46 (ENSOARG00020020663) #24	MRPL10 (ENSOARG00020020614) #25	OSBPL7 (ENSOARG00020020494) #26	TBX21 (ENSOARG00020020433) #27	TBKBP1 (ENSOARG00020020372) #28	KPNB1 (ENSOARG00020020287) #29	NPEPPS (ENSOARG00020020009) #30	MRPL45 (ENSOARG00020019879) #31	GPR179 (ENSOARG00020019685) #32	SOCS7 (ENSOARG00020019553) #33	ARHGAP23 (ENSOARG00020019239) #34	SRCIN1 (ENSOARG00020018349) #35	ENSOARG00020018303 #37	ENSOARG00020018283
Bovinae	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00960000190232	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35
Bos	ANCESTRAL SPECIES	1	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.i #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.e.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00960000190232	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.i #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.e.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00960000190232	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964
Cow	MODERN SPECIES	10	HOXB6 (ENSBTAG00000050006) #7	HOXB5 (ENSBTAG00000045835) #8	HOXB4 (ENSBTAG00000039599) #9	HOXB3 (ENSBTAG00000021427)	HOXB2 (ENSBTAG00000009979) #11	HOXB1 (ENSBTAG00000007603) #12	SKAP1 (ENSBTAG00000000641) #13	SNX11 (ENSBTAG00000020321) #15	CBX1 (ENSBTAG00000002949) #16	NFE2L1 (ENSBTAG00000013653) #17	COPZ2 (ENSBTAG00000039954) #18	CDK5RAP3 (ENSBTAG00000014202) #19	PRR15L (ENSBTAG00000012249)	PNPO (ENSBTAG00000012259) #20	SP2 (ENSBTAG00000013740) #21	SP6 (ENSBTAG00000001825) #22	SCRN2 (ENSBTAG00000001828) #23	LRRC46 (ENSBTAG00000001830) #24	MRPL10 (ENSBTAG00000001832) #25	OSBPL7 (ENSBTAG00000013523) #26	TBX21 (ENSBTAG00000014199) #27	TBKBP1 (ENSBTAG00000011280) #28	KPNB1 (ENSBTAG00000006586) #29	NPEPPS (ENSBTAG00000011435) #30	MRPL45 (ENSBTAG00000025001) #31	ENSBTAG00000049522	GPR179 (ENSBTAG00000001804) #32	SOCS7 (ENSBTAG00000008535) #33	ARHGAP23 (ENSBTAG00000016911) #34	SRCIN1 (ENSBTAG00000013469) #35	ENSBTAG00000053767
Hybrid Bos Indicus	MODERN SPECIES	10	HOXB5 (ENSBIXG00005029559) #8	HOXB4 (ENSBIXG00005029577) #9	HOXB3 (ENSBIXG00005029591)	HOXB2 (ENSBIXG00005029607) #11	HOXB1 (ENSBIXG00005029618) #12	ENSBIXG00005029636	SKAP1 (ENSBIXG00005029657) #13	SNX11 (ENSBIXG00005029679) #15	CBX1 (ENSBIXG00005029691) #16	NFE2L1 (ENSBIXG00005029748) #17	COPZ2 (ENSBIXG00005029862) #18	CDK5RAP3 (ENSBIXG00005029886) #19	PRR15L (ENSBIXG00005029905)	PNPO (ENSBIXG00005029918) #20	ENSBIXG00005029934 #21	SP6 (ENSBIXG00005029948) #22	SCRN2 (ENSBIXG00005029976) #23	LRRC46 (ENSBIXG00005030008) #24	MRPL10 (ENSBIXG00005030023) #25	OSBPL7 (ENSBIXG00005030039) #26	TBX21 (ENSBIXG00005030084) #27	TBKBP1 (ENSBIXG00005030097) #28	KPNB1 (ENSBIXG00005030131) #29	NPEPPS (ENSBIXG00005030159) #30	MRPL45 (ENSBIXG00005030219) #31	ENSBIXG00005030228	GPR179 (ENSBIXG00005030235) #32	SOCS7 (ENSBIXG00005030269) #33	ARHGAP23 (ENSBIXG00005030331) #34	SRCIN1 (ENSBIXG00005030456) #35	EPOP (ENSBIXG00005030515) #37
Bos_a	ANCESTRAL SPECIES		ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b.i #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.e.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00960000190232	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35
Wild yak	MODERN SPECIES	953																SP6 (ENSBMUG00000000772) #22	SCRN2 (ENSBMUG00000000797) #23	LRRC46 (ENSBMUG00000000816) #24	MRPL10 (ENSBMUG00000000829) #25	OSBPL7 (ENSBMUG00000000874) #26	TBX21 (ENSBMUG00000000904) #27	TBKBP1 (ENSBMUG00000000913) #28	KPNB1 (ENSBMUG00000000951) #29	NPEPPS (ENSBMUG00000001034) #30	MRPL45 (ENSBMUG00000001074) #31	ENSBMUG00000001086	GPR179 (ENSBMUG00000001100) #32	SOCS7 (ENSBMUG00000001131) #33	ARHGAP23 (ENSBMUG00000001176) #34	SRCIN1 (ENSBMUG00000001263) #35	ENSBMUG00000001292
Domestic yak	MODERN SPECIES	10	HOXB6 (ENSBGRG00000021579) #7	HOXB5 (ENSBGRG00000021555) #8	HOXB4 (ENSBGRG00000021501) #9	HOXB3 (ENSBGRG00000021464)	HOXB2 (ENSBGRG00000021425) #11	HOXB1 (ENSBGRG00000021404) #12	SKAP1 (ENSBGRG00000021202) #13	SNX11 (ENSBGRG00000021141) #15	CBX1 (ENSBGRG00000021062) #16	NFE2L1 (ENSBGRG00000020783) #17	COPZ2 (ENSBGRG00000020574) #18	CDK5RAP3 (ENSBGRG00000020283) #19	ENSBGRG00000020194	PNPO (ENSBGRG00000019898) #20	ENSBGRG00000019774 #21	SP6 (ENSBGRG00000019744) #22	SCRN2 (ENSBGRG00000019672) #23	LRRC46 (ENSBGRG00000019490) #24	MRPL10 (ENSBGRG00000019422) #25	OSBPL7 (ENSBGRG00000019260) #26	TBX21 (ENSBGRG00000019171) #27	TBKBP1 (ENSBGRG00000019067) #28	KPNB1 (ENSBGRG00000018571) #29	NPEPPS (ENSBGRG00000018276) #30	ENSBGRG00000018222	MRPL45 (ENSBGRG00000017975) #31	ENSBGRG00000017816 #32	SOCS7 (ENSBGRG00000017476) #33	ARHGAP23 (ENSBGRG00000017050) #34	ENSBGRG00000016987	SRCIN1 (ENSBGRG00000015645) #35
American bison	MODERN SPECIES	3101	HOXB6 (ENSBBBG00000021567) #7	HOXB5 (ENSBBBG00000021577) #8	HOXB4 (ENSBBBG00000021585) #9	HOXB3 (ENSBBBG00000005740)	HOXB2 (ENSBBBG00000021598) #11	HOXB1 (ENSBBBG00000021601) #12	SKAP1 (ENSBBBG00000021634) #13	SNX11 (ENSBBBG00000021652) #15	ENSBBBG00000021675 ##16	NFE2L1 (ENSBBBG00000021740) #17	COPZ2 (ENSBBBG00000021782) #18	CDK5RAP3 (ENSBBBG00000021808) #19	PRR15L (ENSBBBG00000021809)	PNPO (ENSBBBG00000021862) #20	SP2 (ENSBBBG00000021914) #21	SP6 (ENSBBBG00000021924) #22	SCRN2 (ENSBBBG00000021958) #23	LRRC46 (ENSBBBG00000021972) #24	MRPL10 (ENSBBBG00000021983) #25	OSBPL7 (ENSBBBG00000022056) #26	TBX21 (ENSBBBG00000005826) #27	ENSBBBG00000022076 #28	KPNB1 (ENSBBBG00000022131) #29	NPEPPS (ENSBBBG00000022236) #30	ENSBBBG00000022252	MRPL45 (ENSBBBG00000022294) #31	ENSBBBG00000005882 #32	SOCS7 (ENSBBBG00000005889) #33	ENSBBBG00000005896 #34	ENSBBBG00000022356	SRCIN1 (ENSBBBG00000022427) #35
Siberian musk deer	MODERN SPECIES	1210	HOXB4 (ENSMMSG00000024528) #9	ENSMMSG00000024530 #10	HOXB3 (ENSMMSG00000024531)	HOXB2 (ENSMMSG00000024532) #11	HOXB1 (ENSMMSG00000024533) #12	ENSMMSG00000024535	SKAP1 (ENSMMSG00000024536) #13	SNX11 (ENSMMSG00000024538) #15	CBX1 (ENSMMSG00000024540) #16	NFE2L1 (ENSMMSG00000024541) #17	COPZ2 (ENSMMSG00000024546) #18	CDK5RAP3 (ENSMMSG00000024548) #19	PRR15L (ENSMMSG00000024549)	PNPO (ENSMMSG00000024550) #20	SP2 (ENSMMSG00000024551) #21	SP6 (ENSMMSG00000018224) #22	SCRN2 (ENSMMSG00000018238) #23	LRRC46 (ENSMMSG00000018351) #24	MRPL10 (ENSMMSG00000018396) #25	OSBPL7 (ENSMMSG00000018422) #26	ENSMMSG00000018451	TBX21 (ENSMMSG00000018475) #27	TBKBP1 (ENSMMSG00000018512) #28	KPNB1 (ENSMMSG00000018546) #29	NPEPPS (ENSMMSG00000018632) #30	ENSMMSG00000018805	MRPL45 (ENSMMSG00000018849) #31	GPR179 (ENSMMSG00000018906) #32	SOCS7 (ENSMMSG00000019056) #33	ARHGAP23 (ENSMMSG00000019156) #34	SRCIN1 (ENSMMSG00000019355) #35
Yarkand deer	MODERN SPECIES	28	HOXB4 (ENSCHYG00000004668) #9	HOXB3 (ENSCHYG00000004670)	HOXB2 (ENSCHYG00000004674) #11	HOXB1 (ENSCHYG00000004684) #12	SKAP1 (ENSCHYG00000004692) #13	ENSCHYG00000004720	SNX11 (ENSCHYG00000004737) #15	CBX1 (ENSCHYG00000004750) #16	NFE2L1 (ENSCHYG00000004781) #17	COPZ2 (ENSCHYG00000004829) #18	ENSCHYG00000004851	CDK5RAP3 (ENSCHYG00000000101) #19	PRR15L (ENSCHYG00000000125)	PNPO (ENSCHYG00000000157) #20	SP2 (ENSCHYG00000000198) #21	SP6 (ENSCHYG00000000221) #22	SCRN2 (ENSCHYG00000000227) #23	LRRC46 (ENSCHYG00000000251) #24	MRPL10 (ENSCHYG00000000265) #25	OSBPL7 (ENSCHYG00000000286) #26	TBX21 (ENSCHYG00000000318) #27	TBKBP1 (ENSCHYG00000000333) #28	KPNB1 (ENSCHYG00000000360) #29	ENSCHYG00000000411	NPEPPS (ENSCHYG00000000456) #30	MRPL45 (ENSCHYG00000000557) #31	GPR179 (ENSCHYG00000000586) #32	SOCS7 (ENSCHYG00000000633) #33	ARHGAP23 (ENSCHYG00000000727) #34	ENSCHYG00000000749	SRCIN1 (ENSCHYG00000000846) #35
Camelidae	ANCESTRAL SPECIES	60	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.a.a ##16	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Arabian camel	MODERN SPECIES	7	HOXB6 (ENSCDRG00005018029) #7	HOXB5 (ENSCDRG00005018055) #8	HOXB4 (ENSCDRG00005018079) #9	HOXB3 (ENSCDRG00005018104)	HOXB2 (ENSCDRG00005018121) #11	HOXB1 (ENSCDRG00005018147) #12	SKAP1 (ENSCDRG00005018166) #13	SNX11 (ENSCDRG00005018232) #15	CBX1 (ENSCDRG00005018330) ##16	NFE2L1 (ENSCDRG00005018357) #17	ENSCDRG00005018515	COPZ2 (ENSCDRG00005018538) #18	CDK5RAP3 (ENSCDRG00005018564) #19	PRR15L (ENSCDRG00005018636)	SP2 (ENSCDRG00005018756) #21	SP6 (ENSCDRG00005018791) #22	SCRN2 (ENSCDRG00005018805) #23	LRRC46 (ENSCDRG00005018865) #24	MRPL10 (ENSCDRG00005018906) #25	OSBPL7 (ENSCDRG00005018943) #26	TBX21 (ENSCDRG00005018980) #27	TBKBP1 (ENSCDRG00005018994) #28	KPNB1 (ENSCDRG00005019017) #29	NPEPPS (ENSCDRG00005019119) #30	MRPL45 (ENSCDRG00005019287) #31	GPR179 (ENSCDRG00005019342) #32	SOCS7 (ENSCDRG00005019385) #33	ENSCDRG00005019433 #34	SRCIN1 (ENSCDRG00005019469) #35	ENSCDRG00005019591	ENSCDRG00005019601
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #35
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Dog	MODERN SPECIES	37	HOXB5 (ENSCAFG00845009832) #8	HOXB4 (ENSCAFG00845017264) #9	HOXB3 (ENSCAFG00845017188)	HOXB2 (ENSCAFG00845017142) #11	HOXB1 (ENSCAFG00845017096) #12	SKAP1 (ENSCAFG00845016959) #13	SNX11 (ENSCAFG00845016720) #15	CBX1 (ENSCAFG00845016596) #16	NFE2L1 (ENSCAFG00845016388) #17	COPZ2 (ENSCAFG00845016156) #18	CDK5RAP3 (ENSCAFG00845016051) #19	ENSCAFG00845016000	PRR15L (ENSCAFG00845015978)	PNPO (ENSCAFG00845015876) #20	SP2 (ENSCAFG00845015786) #21	SP6 (ENSCAFG00845015746) #22	SCRN2 (ENSCAFG00845015686) #23	LRRC46 (ENSCAFG00845015603) #24	MRPL10 (ENSCAFG00845015539) #25	OSBPL7 (ENSCAFG00845015415) #26	TBX21 (ENSCAFG00845015330) #27	TBKBP1 (ENSCAFG00845015281) #28	KPNB1 (ENSCAFG00845015226) #29	NPEPPS (ENSCAFG00845014931) #30	ENSCAFG00845014840 #31	GPR179 (ENSCAFG00845014777) #32	SOCS7 (ENSCAFG00845014686) #33	ARHGAP23 (ENSCAFG00845014513) #34	SRCIN1 (ENSCAFG00845014295) #35	EPOP (ENSCAFG00845014204) #37	MLLT6 (ENSCAFG00845014142)
Dingo	MODERN SPECIES	150	HOXB6 (ENSCAFG00020023302) #7	HOXB5 (ENSCAFG00020023301) #8	HOXB4 (ENSCAFG00020023297) #9	HOXB3 (ENSCAFG00020023294)	HOXB2 (ENSCAFG00020023293) #11	HOXB1 (ENSCAFG00020023290) #12	SKAP1 (ENSCAFG00020023287) #13	SNX11 (ENSCAFG00020023282) #15	CBX1 (ENSCAFG00020023275) #16	NFE2L1 (ENSCAFG00020023270) #17	COPZ2 (ENSCAFG00020023263) #18	CDK5RAP3 (ENSCAFG00020023258) #19	PRR15L (ENSCAFG00020023256)	PNPO (ENSCAFG00020023249) #20	SP2 (ENSCAFG00020023246) #21	SP6 (ENSCAFG00020023243) #22	SCRN2 (ENSCAFG00020023238) #23	LRRC46 (ENSCAFG00020023236) #24	MRPL10 (ENSCAFG00020023232) #25	OSBPL7 (ENSCAFG00020023225) #26	TBX21 (ENSCAFG00020023221) #27	TBKBP1 (ENSCAFG00020023210) #28	KPNB1 (ENSCAFG00020023205) #29	NPEPPS (ENSCAFG00020023203) #30	ENSCAFG00020023199	MRPL45 (ENSCAFG00020023186) #31	GPR179 (ENSCAFG00020023180) #32	SOCS7 (ENSCAFG00020023179) #33	ARHGAP23 (ENSCAFG00020023111) #34	ENSCAFG00020023090 #35	ENSCAFG00020023078 #35
Red fox	MODERN SPECIES	20	HOXB6 (ENSVVUG00000003359) #7	HOXB5 (ENSVVUG00000003354) #8	ENSVVUG00000003340 #9	HOXB3 (ENSVVUG00000003329)	HOXB2 (ENSVVUG00000003328) #11	HOXB1 (ENSVVUG00000003325) #12	SKAP1 (ENSVVUG00000003297) #13	SNX11 (ENSVVUG00000003276) #15	ENSVVUG00000003272 #16	NFE2L1 (ENSVVUG00000003262) #17	COPZ2 (ENSVVUG00000003249) #18	CDK5RAP3 (ENSVVUG00000003227) #19	PRR15L (ENSVVUG00000003218)	PNPO (ENSVVUG00000003178) #20	SP2 (ENSVVUG00000003171) #21	SP6 (ENSVVUG00000003167) #22	SCRN2 (ENSVVUG00000003154) #23	LRRC46 (ENSVVUG00000003146) #24	MRPL10 (ENSVVUG00000003141) #25	ENSVVUG00000003127 #26	TBX21 (ENSVVUG00000003106) #27	ENSVVUG00000003100 #28	KPNB1 (ENSVVUG00000003085) #29	NPEPPS (ENSVVUG00000003061) #30	MRPL45 (ENSVVUG00000003030) #31	GPR179 (ENSVVUG00000002981) #32	SOCS7 (ENSVVUG00000002941) #33	ARHGAP23 (ENSVVUG00000002610) #34	SRCIN1 (ENSVVUG00000002377) #35	EPOP (ENSVVUG00000002338) #37	MLLT6 (ENSVVUG00000002319)
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #35
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00860000135964	ENSGT00940000153451.a.a.a #37
Ursus	ANCESTRAL SPECIES	67	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00390000005809.c.b	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34
American black bear	MODERN SPECIES	1414							SNX11 (ENSUAMG00000017102) #15	CBX1 (ENSUAMG00000017105) #16	NFE2L1 (ENSUAMG00000017111) #17	ENSUAMG00000017113	COPZ2 (ENSUAMG00000017115) #18	CDK5RAP3 (ENSUAMG00000017117) #19	PRR15L (ENSUAMG00000017119)	PNPO (ENSUAMG00000017122) #20	SP2 (ENSUAMG00000017127) #21	SP6 (ENSUAMG00000017132) #22	SCRN2 (ENSUAMG00000017135) #23	LRRC46 (ENSUAMG00000017138) #24	MRPL10 (ENSUAMG00000017142) #25
Giant Panda	MODERN SPECIES	2220																ENSAMEG00000019912 #22
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C #35
American mink	MODERN SPECIES	92	HOXB4 (ENSNVIG00000006040) #9	HOXB3 (ENSNVIG00000006032)	HOXB2 (ENSNVIG00000006024) #11	HOXB1 (ENSNVIG00000006017) #12	ENSNVIG00000006009	SKAP1 (ENSNVIG00000005974) #13	SNX11 (ENSNVIG00000005959) #15	CBX1 (ENSNVIG00000005946) #16	NFE2L1 (ENSNVIG00000005857) #17	ENSNVIG00000005842	COPZ2 (ENSNVIG00000005837) #18	CDK5RAP3 (ENSNVIG00000005742) #19	PR15L (ENSNVIG00000005731)	PNPO (ENSNVIG00000005692) #20	SP2 (ENSNVIG00000005673) #21	SP6 (ENSNVIG00000005667) #22	SCRN2 (ENSNVIG00000005641) #23	LRRC46 (ENSNVIG00000005619) #24	RM10 (ENSNVIG00000005608) #25	OSBPL7 (ENSNVIG00000005460) #26	TBX21 (ENSNVIG00000005442) #27	ENSNVIG00000005426 #28	KPNB1 (ENSNVIG00000005359) #29	NPEPPS (ENSNVIG00000005313) #30	MRPL45 (ENSNVIG00000005287) #31	GPR179 (ENSNVIG00000005217) #32	SOCS7 (ENSNVIG00000005194) #33	ARHGAP23 (ENSNVIG00000005156) #34	ENSNVIG00000005143	ENSNVIG00000005132	SRCIN1 (ENSNVIG00000004933) #35
Ferret	MODERN SPECIES	270	HOXB7 (ENSMPUG00000015328)	HOXB6 (ENSMPUG00000015322) #7	HOXB5 (ENSMPUG00000015316) #8	HOXB4 (ENSMPUG00000015310) #9	HOXB2 (ENSMPUG00000015309) #11	HOXB1 (ENSMPUG00000015307) #12	SKAP1 (ENSMPUG00000015305) #13	SNX11 (ENSMPUG00000015303) #15	CBX1 (ENSMPUG00000015302) ##16	NFE2L1 (ENSMPUG00000015301) #17	COPZ2 (ENSMPUG00000015292) #18	CDK5RAP3 (ENSMPUG00000015291) #19	PRR15L (ENSMPUG00000020087)	PNPO (ENSMPUG00000015290) #20	SP2 (ENSMPUG00000015289) #21	SP6 (ENSMPUG00000020086) #22	SCRN2 (ENSMPUG00000015288) #23	LRRC46 (ENSMPUG00000015287) #24	MRPL10 (ENSMPUG00000015278) #25	OSBPL7 (ENSMPUG00000015276) #26	ENSMPUG00000015275	ENSMPUG00000015273	TBX21 (ENSMPUG00000015272) #27	TBKBP1 (ENSMPUG00000015271) #28	KPNB1 (ENSMPUG00000015220) #29	NPEPPS (ENSMPUG00000015219) #30	MRPL45 (ENSMPUG00000015218) #31	GPR179 (ENSMPUG00000015211) #32	SOCS7 (ENSMPUG00000015192) #33	ARHGAP23 (ENSMPUG00000015145) #34	SRCIN1 (ENSMPUG00000015140) #35
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000013771.p	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.i #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00860000135964
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000013771.p	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00950000185410	ENSGT00390000004405.b #18	ENSGT00940000154534.a	ENSGT00390000000713 #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.i.a.a #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000013771.p	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00940000154534.a	ENSGT00390000000713 #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679.i.a.a #31	ENSGT00390000012679.i.b #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00930000153020	ENSGT00940000157961.C #35
leopard	MODERN SPECIES	67	HOXB5 (ENSPPRG00000000333) #8	HOXB4 (ENSPPRG00000000220) #9	HOXB3 (ENSPPRG00000022415)	HOXB2 (ENSPPRG00000020926) #11	HOXB1 (ENSPPRG00000017656) #12	ENSPPRG00000017115	ENSPPRG00000016613	SKAP1 (ENSPPRG00000015336) #13	SNX11 (ENSPPRG00000012061) #15	CBX1 (ENSPPRG00000009475) #16	NFE2L1 (ENSPPRG00000009101) #17	COPZ2 (ENSPPRG00000006801) #18	CDK5RAP3 (ENSPPRG00000006376) #19	PNPO (ENSPPRG00000005037) #20	SP2 (ENSPPRG00000003332) #21	SP6 (ENSPPRG00000016089) #22	SCRN2 (ENSPPRG00000002730) #23	LRRC46 (ENSPPRG00000001915) #24	MRPL10 (ENSPPRG00000001188) #25	ENSPPRG00000001011 #26	TBX21 (ENSPPRG00000000491) #27	TBKBP1 (ENSPPRG00000000101) #28	KPNB1 (ENSPPRG00000022879) #29	NPEPPS (ENSPPRG00000020677) #30	ENSPPRG00000014693 #31	GPR179 (ENSPPRG00000013909) #32	SOCS7 (ENSPPRG00000012918) #33	ARHGAP23 (ENSPPRG00000012371) #34	ENSPPRG00000011407	SRCIN1 (ENSPPRG00000011073) #35	ENSPPRG00000015449
lion	MODERN SPECIES	14	HOXB6 (ENSPLOG00000021669) #7	HOXB5 (ENSPLOG00000021683) #8	HOXB4 (ENSPLOG00000021697) #9	HOXB3 (ENSPLOG00000021711)	HOXB2 (ENSPLOG00000021733) #11	HOXB1 (ENSPLOG00000021742) #12	ENSPLOG00000021761	SKAP1 (ENSPLOG00000021790) #13	SNX11 (ENSPLOG00000021872) #15	CBX1 (ENSPLOG00000021907) #16	NFE2L1 (ENSPLOG00000021931) #17	COPZ2 (ENSPLOG00000021972) #18	CDK5RAP3 (ENSPLOG00000022033) #19	PRR15L (ENSPLOG00000022093)	SP2 (ENSPLOG00000022101) #21	SP6 (ENSPLOG00000022115) #22	SCRN2 (ENSPLOG00000022130) #23	LRRC46 (ENSPLOG00000005433) #24	MRPL10 (ENSPLOG00000005459) #25	OSBPL7 (ENSPLOG00000005563) #26	TBX21 (ENSPLOG00000005640) #27	TBKBP1 (ENSPLOG00000005658) #28	KPNB1 (ENSPLOG00000005771) #29	NPEPPS (ENSPLOG00000005888) #30	MRPL45 (ENSPLOG00000006010) #31	GPR179 (ENSPLOG00000006047) #32	SOCS7 (ENSPLOG00000006096) #33	ARHGAP23 (ENSPLOG00000006163) #34	SRCIN1 (ENSPLOG00000006464) #35	EPOP (ENSPLOG00000006763) #37	MLLT6 (ENSPLOG00000006793)
Cat	MODERN SPECIES	245	HOXB5 (ENSFCAG00000039068) #8	HOXB4 (ENSFCAG00000051422) #9	HOXB3 (ENSFCAG00000006408)	HOXB2 (ENSFCAG00000045039) #11	HOXB1 (ENSFCAG00000028151) #12	ENSFCAG00000034133	SKAP1 (ENSFCAG00000004784) #13	SNX11 (ENSFCAG00000009371) #15	CBX1 (ENSFCAG00000006056) ##16	NFE2L1 (ENSFCAG00000009369) #17	COPZ2 (ENSFCAG00000034233) #18	CDK5RAP3 (ENSFCAG00000009367) #19	PRR15L (ENSFCAG00000009366)	PNPO (ENSFCAG00000001300) #20	SP2 (ENSFCAG00000009365) #21	SP6 (ENSFCAG00000009363) #22	SCRN2 (ENSFCAG00000009362) #23	LRRC46 (ENSFCAG00000045119) #24	MRPL10 (ENSFCAG00000009360) #25	OSBPL7 (ENSFCAG00000009359) #26	TBX21 (ENSFCAG00000010607) #27	TBKBP1 (ENSFCAG00000010605) #28	KPNB1 (ENSFCAG00000023994) #29	NPEPPS (ENSFCAG00000027844) #30	MRPL45 (ENSFCAG00000005808) #31	GPR179 (ENSFCAG00000005812) #32	SOCS7 (ENSFCAG00000005815) #33	ARHGAP23 (ENSFCAG00000005816) #34	SRCIN1 (ENSFCAG00000005817) #35	ENSFCAG00000048827	EPOP (ENSFCAG00000036017) #37
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Equus	ANCESTRAL SPECIES		ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Donkey	MODERN SPECIES	4	HOXB7 (ENSEASG00005000556)	HOXB5 (ENSEASG00005000563) #8	HOXB6 (ENSEASG00005000560) #7	HOXB3 (ENSEASG00005000581)	HOXB2 (ENSEASG00005000585) #11	HOXB1 (ENSEASG00005000594) #12	SKAP1 (ENSEASG00005000601) #13	SNX11 (ENSEASG00005000605) #15	CBX1 (ENSEASG00005000607) #16	NFE2L1 (ENSEASG00005000634) #17	COPZ2 (ENSEASG00005000641) #18	CDK5RAP3 (ENSEASG00005000658) #19	PRR15L (ENSEASG00005000660)	PNPO (ENSEASG00005028794) #20	SP2 (ENSEASG00005000667) #21	SP6 (ENSEASG00005036407) #22	SCRN2 (ENSEASG00005000671) #23	LRRC46 (ENSEASG00005000676) #24	MRPL10 (ENSEASG00005027403) #25	OSBPL7 (ENSEASG00005000733) #26	TBX21 (ENSEASG00005000739) #27	TBKBP1 (ENSEASG00005000756) #28	KPNB1 (ENSEASG00005000805) #29	ENSEASG00005000896 #30	ENSEASG00005001461 #31	ENSEASG00005001474 #32	SOCS7 (ENSEASG00005001492) #33	ARHGAP23 (ENSEASG00005001497) #34	SRCIN1 (ENSEASG00005001556) #35	EPOP (ENSEASG00005029689) #37	MLLT6 (ENSEASG00005001776)
Horse	MODERN SPECIES	2	HOXB8 (ENSECAG00000034473)	HOXB5 (ENSECAG00000012439) #8	HOXB4 (ENSECAG00000028576) #9	HOXB3 (ENSECAG00000002707)	HOXB2 (ENSECAG00000012423) #11	HOXB1 (ENSECAG00000011628) #12	SKAP1 (ENSECAG00000010544) #13	SNX11 (ENSECAG00000008117) #15	CBX1 (ENSECAG00000008048) #16	NFE2L1 (ENSECAG00000007777) #17	COPZ2 (ENSECAG00000024471) #18	CDK5RAP3 (ENSECAG00000018688) #19	PRR15L (ENSECAG00000002658)	PNPO (ENSECAG00000014995) #20	SP2 (ENSECAG00000012859) #21	SP6 (ENSECAG00000012853) #22	SCRN2 (ENSECAG00000009826) #23	LRRC46 (ENSECAG00000007543) #24	OSBPL7 (ENSECAG00000019067) #26	TBX21 (ENSECAG00000018160) #27	TBKBP1 (ENSECAG00000016107) #28	KPNB1 (ENSECAG00000014560) #29	NPEPPS (ENSECAG00000007392) #30	MRPL45 (ENSECAG00000000590) #31	GPR179 (ENSECAG00000021843) #32	SOCS7 (ENSECAG00000021699) #33	ARHGAP23 (ENSECAG00000031942) #34	SRCIN1 (ENSECAG00000014219) #35	EPOP (ENSECAG00000036519) #37	MLLT6 (ENSECAG00000012082)	CISD3 (ENSECAG00000011982)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00980000199681 #10	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d.b #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Greater horseshoe bat	MODERN SPECIES	13	HOXB5 (ENSRFEG00010021836) #8	HOXB4 (ENSRFEG00010021844) #9	ENSRFEG00010021849 #10	HOXB3 (ENSRFEG00010021853)	HOXB2 (ENSRFEG00010021859) #11	HOXB1 (ENSRFEG00010021864) #12	SKAP1 (ENSRFEG00010021866) #13	SNX11 (ENSRFEG00010021879) #15	CBX1 (ENSRFEG00010021893) #16	NFE2L1 (ENSRFEG00010021900) #17	COPZ2 (ENSRFEG00010021918) #18	CDK5RAP3 (ENSRFEG00010021928) #19	PRR15L (ENSRFEG00010021936)	PNPO (ENSRFEG00010021942) #20	SP2 (ENSRFEG00010021950) #21	SP6 (ENSRFEG00010021957) #22	SCRN2 (ENSRFEG00010021961) #23	LRRC46 (ENSRFEG00010008197) #24	MRPL10 (ENSRFEG00010008230) #25	OSBPL7 (ENSRFEG00010008272) #26	TBX21 (ENSRFEG00010008382) #27	TBKBP1 (ENSRFEG00010008412) #28	KPNB1 (ENSRFEG00010008460) #29	NPEPPS (ENSRFEG00010008553) #30	MRPL45 (ENSRFEG00010008623) #31	GPR179 (ENSRFEG00010008688) #32	SOCS7 (ENSRFEG00010008940) #33	ARHGAP23 (ENSRFEG00010009067) #34	SRCIN1 (ENSRFEG00010009277) #35	EPOP (ENSRFEG00010009672) #37	MLLT6 (ENSRFEG00010009688)
Megabat	MODERN SPECIES	2332												COPZ2 (ENSPVAG00000004259) #18	CDK5RAP3 (ENSPVAG00000004258) #19	PNPO (ENSPVAG00000004256) #20	SP2 (ENSPVAG00000004255) #21	SP6 (ENSPVAG00000004254) #22	SCRN2 (ENSPVAG00000004253) #23	LRRC46 (ENSPVAG00000004252) #24	MRPL10 (ENSPVAG00000004251) #25	OSBPL7 (ENSPVAG00000004250) #26
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Elephant	MODERN SPECIES	310	HOXB4 (ENSLAFG00000013588) #9	HOXB3 (ENSLAFG00000030335)	ENSLAFG00000030505	HOXB2 (ENSLAFG00000030161) #11	ENSLAFG00000031610 #12	SKAP1 (ENSLAFG00000018530) #13	SNX11 (ENSLAFG00000018529) #15	CBX1 (ENSLAFG00000018526) #16	NFE2L1 (ENSLAFG00000018523) #17	ENSLAFG00000015209 #18	ENSLAFG00000030284	CDK5RAP3 (ENSLAFG00000000339) #19	PRR15L (ENSLAFG00000015553)	PNPO (ENSLAFG00000015550) #20	SP2 (ENSLAFG00000021817) #21	SP6 (ENSLAFG00000010701) #22	SCRN2 (ENSLAFG00000025964) #23	LRRC46 (ENSLAFG00000006826) #24	MRPL10 (ENSLAFG00000028127) #25	OSBPL7 (ENSLAFG00000006819) #26	TBX21 (ENSLAFG00000028463) #27	TBKBP1 (ENSLAFG00000001330) #28	KPNB1 (ENSLAFG00000001328) #29	NPEPPS (ENSLAFG00000001325) #30	MRPL45 (ENSLAFG00000014050) #31	ENSLAFG00000015267 #32	SOCS7 (ENSLAFG00000015279) #33	ARHGAP23 (ENSLAFG00000028622) #34	SRCIN1 (ENSLAFG00000012974) #35	EPOP (ENSLAFG00000023127) #37	MLLT6 (ENSLAFG00000022685)
Tenrec	MODERN SPECIES	7940															PNPO (ENSETEG00000017018) #20	SP6 (ENSETEG00000017017) #22
Xenarthra	ANCESTRAL SPECIES	258							ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27
Armadillo	MODERN SPECIES	825							SKAP1 (ENSDNOG00000039133) #13	SNX11 (ENSDNOG00000032877) #15	CBX1 (ENSDNOG00000040249) #16	NFE2L1 (ENSDNOG00000047006) #17	COPZ2 (ENSDNOG00000037475) #18	CDK5RAP3 (ENSDNOG00000030779) #19	PRR15L (ENSDNOG00000008323)	PNPO (ENSDNOG00000032160) #20	SP2 (ENSDNOG00000013944) #21	SP6 (ENSDNOG00000042665) #22	SCRN2 (ENSDNOG00000034719) #23	LRRC46 (ENSDNOG00000047964) #24	MRPL10 (ENSDNOG00000024176) #25	OSBPL7 (ENSDNOG00000033308) #26	ENSDNOG00000045438 #27
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Opossum	MODERN SPECIES	1	HOXB5 (ENSMODG00000012338) #8	HOXB4 (ENSMODG00000042083) #9	HOXB3 (ENSMODG00000012344)	HOXB2 (ENSMODG00000012347) #11	HOXB1 (ENSMODG00000046816) #12	SKAP1 (ENSMODG00000012360) #13	SNX11 (ENSMODG00000051179) #15	CBX1 (ENSMODG00000012368) #16	NFE2L1 (ENSMODG00000012375) #17	COPZ2 (ENSMODG00000012424) #18	CDK5RAP3 (ENSMODG00000012439) #19	PRR15L (ENSMODG00000024090)	PNPO (ENSMODG00000012446) #20	ENSMODG00000050066	SP2 (ENSMODG00000012452) #21	SP6 (ENSMODG00000012454) #22	SCRN2 (ENSMODG00000012467) #23	LRRC46 (ENSMODG00000012473) #24	MRPL10 (ENSMODG00000038269) #25	OSBPL7 (ENSMODG00000012518) #26	ENSMODG00000012526 #27	ENSMODG00000039000 #28	KPNB1 (ENSMODG00000012505) #29	NPEPPS (ENSMODG00000012557) #30	MRPL45 (ENSMODG00000012560) #31	GPR179 (ENSMODG00000012564) #32	SOCS7 (ENSMODG00000012566) #33	ARHGAP23 (ENSMODG00000012570) #34	SRCIN1 (ENSMODG00000012577) #35	ENSMODG00000012582 #37	MLLT6 (ENSMODG00000012598)
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397.b #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.e #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Common wonbat	MODERN SPECIES	1037	HOXB5 (ENSVURG00010007599) #8	HOXB4 (ENSVURG00010007589) #9	HOXB3 (ENSVURG00010007587)	HOXB2 (ENSVURG00010007579) #11	HOXB1 (ENSVURG00010007572) #12	SKAP1 (ENSVURG00010007559) #13	SNX11 (ENSVURG00010007541) #15	CBX1 (ENSVURG00010007537) #16	NFE2L1 (ENSVURG00010007465) #17	COPZ2 (ENSVURG00010007430) #18	CDK5RAP3 (ENSVURG00010007403) #19	PRR15L (ENSVURG00010007394)	PNPO (ENSVURG00010007376) #20	ENSVURG00010007365	SP2 (ENSVURG00010007347) #21	SP6 (ENSVURG00010007336) #22	SCRN2 (ENSVURG00010007326) #23	LRRC46 (ENSVURG00010007320) #24	MRPL10 (ENSVURG00010007313) #25	OSBPL7 (ENSVURG00010007175) #26	TBX21 (ENSVURG00010007151) #27	TBKBP1 (ENSVURG00010007134) #28	KPNB1 (ENSVURG00010007118) #29	ENSVURG00010007112 #30	MRPL45 (ENSVURG00010007098) #31	ENSVURG00010007072 #32	SOCS7 (ENSVURG00010006912) #33	ARHGAP23 (ENSVURG00010006847) #34	SRCIN1 (ENSVURG00010006777) #35	EPOP (ENSVURG00010006761) #37	MLLT6 (ENSVURG00010006746)
koala	MODERN SPECIES	67	HOXB5 (ENSPCIG00000031080) #8	HOXB4 (ENSPCIG00000000195) #9	HOXB3 (ENSPCIG00000000217)	HOXB2 (ENSPCIG00000000295) #11	HOXB1 (ENSPCIG00000033449) #12	SKAP1 (ENSPCIG00000000339) #13	SNX11 (ENSPCIG00000000612) #15	CBX1 (ENSPCIG00000000630) #16	NFE2L1 (ENSPCIG00000000720) #17	COPZ2 (ENSPCIG00000000757) #18	CDK5RAP3 (ENSPCIG00000000798) #19	PRR15L (ENSPCIG00000000814)	PNPO (ENSPCIG00000000828) #20	ENSPCIG00000000834	SP2 (ENSPCIG00000000843) #21	SP6 (ENSPCIG00000000873) #22	SCRN2 (ENSPCIG00000000883) #23	LRRC46 (ENSPCIG00000000900) #24	MRPL10 (ENSPCIG00000031062) #25	OSBPL7 (ENSPCIG00000000940) #26	ENSPCIG00000000999 #27	TBKBP1 (ENSPCIG00000001017) #28	KPNB1 (ENSPCIG00000001034) #29	NPEPPS (ENSPCIG00000009620) #30	MRPL45 (ENSPCIG00000001069) #31	ENSPCIG00000001092 #32	SOCS7 (ENSPCIG00000001102) #33	ARHGAP23 (ENSPCIG00000001149) #34	SRCIN1 (ENSPCIG00000001224) #35	EPOP (ENSPCIG00000001334) #37	MLLT6 (ENSPCIG00000001404)
Wallaby	MODERN SPECIES	9257																SP6 (ENSMEUG00000007329) #22	SCRN2 (ENSMEUG00000007319) #23	ENSMEUG00000007300 #24	ENSMEUG00000007293 #25	OSBPL7 (ENSMEUG00000007269) #26
Tasmanian devil	MODERN SPECIES	3	HOXB7 (ENSSHAG00000022783)	HOXB5 (ENSSHAG00000024100) #8	HOXB3 (ENSSHAG00000031207)	HOXB2 (ENSSHAG00000012232) #11	HOXB1 (ENSSHAG00000012150) #12	ENSSHAG00000029678	SNX11 (ENSSHAG00000029423) #15	CBX1 (ENSSHAG00000023789) #16	NFE2L1 (ENSSHAG00000026195) #17	COPZ2 (ENSSHAG00000023675) #18	CDK5RAP3 (ENSSHAG00000006548) #19	PRR15L (ENSSHAG00000025985)	PNPO (ENSSHAG00000023730) #20	ENSSHAG00000005930	SP2 (ENSSHAG00000005633) #21	SP6 (ENSSHAG00000030597) #22	SCRN2 (ENSSHAG00000003868) #23	LRRC46 (ENSSHAG00000003740) #24	MRPL10 (ENSSHAG00000030224) #25	OSBPL7 (ENSSHAG00000003116) #26	ENSSHAG00000028042 #27	ENSSHAG00000018315 #27	TBKBP1 (ENSSHAG00000021573) #28	ENSSHAG00000018214 #29	ENSSHAG00000018038 #30	ENSSHAG00000025003 #31	ENSSHAG00000017950 #32	SOCS7 (ENSSHAG00000031561) #33	ARHGAP23 (ENSSHAG00000017726) #34	SRCIN1 (ENSSHAG00000017633) #35	ENSSHAG00000025033
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Common wall lizard	MODERN SPECIES	4	HOXB5 (ENSPMRG00000013170) #8	HOXB4 (ENSPMRG00000013173) #9	HOXB3 (ENSPMRG00000013178)	HOXB2 (ENSPMRG00000013183) #11	HOXB1 (ENSPMRG00000013189) #12	ENSPMRG00000013192	CBX1 (ENSPMRG00000013202) ##16	SNX11 (ENSPMRG00000013221) #15	NFE2L1 (ENSPMRG00000013246) #17	ENSPMRG00000013258	COPZ2 (ENSPMRG00000013275) #18	CDK5RAP3 (ENSPMRG00000013294) #19	PNPO (ENSPMRG00000013310) #20	ENSPMRG00000013316	SP2 (ENSPMRG00000013320) #21	SP6 (ENSPMRG00000013329) #22	SCRN2 (ENSPMRG00000013336) #23	LRRC46 (ENSPMRG00000013345) #24	OSBPL7 (ENSPMRG00000013357) #26	TBX21 (ENSPMRG00000013375) #27	TBKBP1 (ENSPMRG00000013381) #28	KPNB1 (ENSPMRG00000013395) #29	NPEPPS (ENSPMRG00000013437) #30	MRPL45 (ENSPMRG00000013492) #31	GPR179 (ENSPMRG00000013502) #32	SOCS7 (ENSPMRG00000015866) #33	ARHGAP23 (ENSPMRG00000015886) #34	SRCIN1 (ENSPMRG00000015906) #35	ENSPMRG00000015937	ENSPMRG00000015948	MLLT6 (ENSPMRG00000015968)
Argentine black and white tegu	MODERN SPECIES	32	HOXB5 (ENSSMRG00000021839) #8	HOXB4 (ENSSMRG00000021841) #9	HOXB3 (ENSSMRG00000021842)	HOXB2 (ENSSMRG00000021844) #11	HOXB1 (ENSSMRG00000021845) #12	SKAP1 (ENSSMRG00000021847) #13	SNX11 (ENSSMRG00000021848) #15	CBX1 (ENSSMRG00000021849) ##16	NFE2L1 (ENSSMRG00000021850) #17	COPZ2 (ENSSMRG00000021851) #18	CDK5RAP3 (ENSSMRG00000021852) #19	PRR15L (ENSSMRG00000021853)	PNPO (ENSSMRG00000021854) #20	ENSSMRG00000021855	SP2 (ENSSMRG00000021856) #21	SP6 (ENSSMRG00000021857) #22	SCRN2 (ENSSMRG00000021858) #23	LRRC46 (ENSSMRG00000000025) #24	MRPL10 (ENSSMRG00000000096) #25	OSBPL7 (ENSSMRG00000000139) #26	TBX21 (ENSSMRG00000000195) #27	TBKBP1 (ENSSMRG00000000217) #28	KPNB1 (ENSSMRG00000000247) #29	NPEPPS (ENSSMRG00000000307) #30	MRPL45 (ENSSMRG00000000340) #31	GPR179 (ENSSMRG00000000359) #32	SOCS7 (ENSSMRG00000000374) #33	ENSSMRG00000000409	ARHGAP23 (ENSSMRG00000000448) #34	SRCIN1 (ENSSMRG00000000664) #35	ENSSMRG00000002315 #37
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898.e #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776.a #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00960000189742
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439.c #26	ENSGT00940000160397 #27	ENSGT00940000153704.B.e #28	ENSGT00940000153704.B.f #28	ENSGT00550000074898.e #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776.a #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.c.a ##16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590.b #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00960000192469	ENSGT00390000000603 #25	ENSGT00940000157439.c #26	ENSGT00940000160397 #27	ENSGT00940000153704.B.e #28	ENSGT00940000153704.B.f #28	ENSGT00550000074898.e #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776.a #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00960000189742
Eastern brown snake	MODERN SPECIES	49	HOXB5 (ENSPTXG00000013900) #8	HOXB4 (ENSPTXG00000013902) #9	HOXB3 (ENSPTXG00000013904)	HOXB2 (ENSPTXG00000013905) #11	HOXB1 (ENSPTXG00000013906) #12	ENSPTXG00000013907	SKAP1 (ENSPTXG00000013908) #13	SNX11 (ENSPTXG00000013909) #15	ENSPTXG00000013911 ##16	NFE2L1 (ENSPTXG00000013912) #17	COPZ2 (ENSPTXG00000013913) #18	CDK5RAP3 (ENSPTXG00000013914) #19	PRR15L (ENSPTXG00000013915)	PNPO (ENSPTXG00000013916) #20	ENSPTXG00000013917 #21	SP6 (ENSPTXG00000013918) #22	SCRN2 (ENSPTXG00000013919) #23	ENSPTXG00000013920	MRPL10 (ENSPTXG00000013921) #25	OSBPL7 (ENSPTXG00000013922) #26	TBX21 (ENSPTXG00000013928) #27	ENSPTXG00000013929	ENSPTXG00000013930 #28	ENSPTXG00000013931 #29	NPEPPS (ENSPTXG00000013932) #30	MRPL45 (ENSPTXG00000013933) #31	ENSPTXG00000013934 #32	SOCS7 (ENSPTXG00000013935) #33	ARHGAP23 (ENSPTXG00000013936) #34	SRCIN1 (ENSPTXG00000013940) #35	ENSPTXG00000013956
Mainland tiger snake	MODERN SPECIES	29	HOXB6 (ENSNSUG00000007444) #7	HOXB5 (ENSNSUG00000007445) #8	HOXB4 (ENSNSUG00000007447) #9	HOXB3 (ENSNSUG00000007448)	HOXB2 (ENSNSUG00000007449) #11	HOXB1 (ENSNSUG00000007450) #12	SKAP1 (ENSNSUG00000007452) #13	SNX11 (ENSNSUG00000007454) #15	ENSNSUG00000007455 ##16	NFE2L1 (ENSNSUG00000007456) #17	COPZ2 (ENSNSUG00000007459) #18	CDK5RAP3 (ENSNSUG00000007503) #19	PRR15L (ENSNSUG00000007504)	PNPO (ENSNSUG00000007506) #20	ENSNSUG00000007509 #21	SP6 (ENSNSUG00000007513) #22	SCRN2 (ENSNSUG00000007517) #23	ENSNSUG00000007519	MRPL10 (ENSNSUG00000007520) #25	OSBPL7 (ENSNSUG00000007592) #26	TBX21 (ENSNSUG00000007594) #27	TBKBP1 (ENSNSUG00000007595) #28	ENSNSUG00000007596 #29	NPEPPS (ENSNSUG00000008148) #30	MRPL45 (ENSNSUG00000008681) #31	ENSNSUG00000008682 #32	SOCS7 (ENSNSUG00000008683) #33	SRCIN1 (ENSNSUG00000008709) #35	ENSNSUG00000008710	MLLT6 (ENSNSUG00000008711)	ENSNSUG00000008712
Blue-lipped sea krait	MODERN SPECIES	6899																SP6 (ENSLLTG00000015722) #22
Indian cobra	MODERN SPECIES	337	HOXB7 (ENSNNAG00000009344)	HOXB6 (ENSNNAG00000009328) #7	HOXB5 (ENSNNAG00000009308) #8	HOXB4 (ENSNNAG00000009277) #9	HOXB3 (ENSNNAG00000009256)	HOXB2 (ENSNNAG00000009232) #11	HOXB1 (ENSNNAG00000009145) #12	SNX11 (ENSNNAG00000009074) #15	ENSNNAG00000009045 ##16	NFE2L1 (ENSNNAG00000009022) #17	COPZ2 (ENSNNAG00000008924) #18	CDK5RAP3 (ENSNNAG00000008878) #19	PRR15L (ENSNNAG00000008859)	PNPO (ENSNNAG00000008837) #20	ENSNNAG00000008826 #21	SP6 (ENSNNAG00000008820) #22	SCRN2 (ENSNNAG00000008774) #23	ENSNNAG00000008753	MRPL10 (ENSNNAG00000008730) #25	OSBPL7 (ENSNNAG00000008187) #26	TBX21 (ENSNNAG00000008104) #27	TBKBP1 (ENSNNAG00000008059) #28	ENSNNAG00000007982 #29	NPEPPS (ENSNNAG00000007364) #30	MRPL45 (ENSNNAG00000007294) #31	ENSNNAG00000007277 #32	SOCS7 (ENSNNAG00000007201) #33	ARHGAP23 (ENSNNAG00000007152) #34	ENSNNAG00000007142	SRCIN1 (ENSNNAG00000007080) #35	ENSNNAG00000007071
Lizard	MODERN SPECIES	5	HOXB4 (ENSACAG00000006499) #9	HOXB3 (ENSACAG00000006508)	HOXB2 (ENSACAG00000006521) #11	HOXB1 (ENSACAG00000035547) #12	ENSACAG00000041448	ENSACAG00000034966	SKAP1 (ENSACAG00000006534) #13	SNX11 (ENSACAG00000006556) #15	ENSACAG00000006594 ##16	NFE2L1 (ENSACAG00000006615) #17	COPZ2 (ENSACAG00000006651) #18	CDK5RAP3 (ENSACAG00000006686) #19	PRR15L (ENSACAG00000006762)	PNPO (ENSACAG00000006764) #20	SP2 (ENSACAG00000006793) #21	SP6 (ENSACAG00000006831) #22	SCRN2 (ENSACAG00000006837) #23	LRRC46 (ENSACAG00000006887) #24	MRPL10 (ENSACAG00000006889) #25	OSBPL7 (ENSACAG00000006906) #26	TBX21 (ENSACAG00000007044) #27	TBKBP1 (ENSACAG00000007079) #28	KPNB1 (ENSACAG00000007097) #29	NPEPPS (ENSACAG00000007242) #30	MRPL45 (ENSACAG00000007343) #31	GPR179 (ENSACAG00000043732) #32	SOCS7 (ENSACAG00000032737) #33	ARHGAP23 (ENSACAG00000007448) #34	SRCIN1 (ENSACAG00000007498) #35	ENSACAG00000017973 #37	MLLT6 (ENSACAG00000017970)
tuatara	MODERN SPECIES	1705						ENSSPUG00000017491	SKAP1 (ENSSPUG00000017498) #13	SNX11 (ENSSPUG00000017511) #15	CBX1 (ENSSPUG00000017523) ##16	NFE2L1 (ENSSPUG00000017549) #17	COPZ2 (ENSSPUG00000017576) #18	CDK5RAP3 (ENSSPUG00000017587) #19	PRR15L (ENSSPUG00000017603)	ENSSPUG00000017635	SP2 (ENSSPUG00000017648) #21	SP6 (ENSSPUG00000017659) #22	SCRN2 (ENSSPUG00000017669) #23	LRRC46 (ENSSPUG00000017689) #24	MRPL10 (ENSSPUG00000017695) #25	OSBPL7 (ENSSPUG00000017709) #26	TBX21 (ENSSPUG00000017746) #27	TBKBP1 (ENSSPUG00000017792) #28	KPNB1 (ENSSPUG00000017799) #29	NPEPPS (ENSSPUG00000017816) #30	MRPL45 (ENSSPUG00000017848) #31	ENSSPUG00000017870 #32	SOCS7 (ENSSPUG00000017876) #33	ARHGAP23 (ENSSPUG00000017887) #34	ENSSPUG00000017899	SRCIN1 (ENSSPUG00000017913) #35	MLLT6 (ENSSPUG00000017943)
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Three-toed box turtle	MODERN SPECIES	91	HOXB5 (ENSTMTG00000007666) #8	HOXB4 (ENSTMTG00000007660) #9	HOXB3 (ENSTMTG00000007653)	HOXB2 (ENSTMTG00000007640) #11	HOXB1 (ENSTMTG00000007622) #12	SKAP1 (ENSTMTG00000007393) #13	SNX11 (ENSTMTG00000007347) #15	CBX1 (ENSTMTG00000007333) #16	NFE2L1 (ENSTMTG00000007320) #17	COPZ2 (ENSTMTG00000007271) #18	CDK5RAP3 (ENSTMTG00000007229) #19	PRR15L (ENSTMTG00000007217)	PNPO (ENSTMTG00000007206) #20	ENSTMTG00000007188	SP2 (ENSTMTG00000007171) #21	ENSTMTG00000007161 #22	SCRN2 (ENSTMTG00000007144) #23	ENSTMTG00000007129	MRPL10 (ENSTMTG00000007114) #25	ENSTMTG00000007063 #26	ENSTMTG00000007028 #26	TBX21 (ENSTMTG00000007000) #27	TBKBP1 (ENSTMTG00000006974) #28	KPNB1 (ENSTMTG00000006930) #29	NPEPPS (ENSTMTG00000006865) #30	MRPL45 (ENSTMTG00000006838) #31	ENSTMTG00000006740 #32	SOCS7 (ENSTMTG00000006649) #33	ARHGAP23 (ENSTMTG00000006551) #34	SRCIN1 (ENSTMTG00000006192) #35	ENSTMTG00000006135 #37
painted turtle	MODERN SPECIES	2394	HOXB6 (ENSCPBG00000027348) #7	HOXB5 (ENSCPBG00000027349) #8	ENSCPBG00000027351	HOXB2 (ENSCPBG00000027352) #11	HOXB1 (ENSCPBG00000027354) #12	SKAP1 (ENSCPBG00000027357) #13	SNX11 (ENSCPBG00000027362) #15	CBX1 (ENSCPBG00000027366) #16	NFE2L1 (ENSCPBG00000027369) #17	COPZ2 (ENSCPBG00000027373) #18	CDK5RAP3 (ENSCPBG00000027376) #19	PRR15L (ENSCPBG00000027380)	PNPO (ENSCPBG00000027382) #20	ENSCPBG00000027388	SP2 (ENSCPBG00000027391) #21	SP6 (ENSCPBG00000027395) #22	SCRN2 (ENSCPBG00000027397) #23	LRRC46 (ENSCPBG00000027399) #24	MRPL10 (ENSCPBG00000027401) #25	OSBPL7 (ENSCPBG00000027405) #26	TBX21 (ENSCPBG00000027414) #27	ENSCPBG00000027421 #28	KPNB1 (ENSCPBG00000027423) #29	NPEPPS (ENSCPBG00000027428) #30	MRPL45 (ENSCPBG00000027431) #31	ENSCPBG00000027434 #32	ARHGAP23 (ENSCPBG00000027456) #34	SRCIN1 (ENSCPBG00000027469) #35	ENSCPBG00000027476	MLLT6 (ENSCPBG00000027478)	ENSCPBG00000027483
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Abingdon island giant tortoise	MODERN SPECIES	1609	HOXB5 (ENSCABG00000002737) #8	HOXB4 (ENSCABG00000002736) #9	HOXB3 (ENSCABG00000002733)	HOXB2 (ENSCABG00000002731) #11	HOXB1 (ENSCABG00000002728) #12	SKAP1 (ENSCABG00000002721) #13	SNX11 (ENSCABG00000002717) #15	CBX1 (ENSCABG00000002713) #16	NFE2L1 (ENSCABG00000002708) #17	COPZ2 (ENSCABG00000002681) #18	CDK5RAP3 (ENSCABG00000002680) #19	PRR15L (ENSCABG00000002679)	PNPO (ENSCABG00000002678) #20	ENSCABG00000002677	SP2 (ENSCABG00000002675) #21	SP6 (ENSCABG00000002674) #22	SCRN2 (ENSCABG00000002671) #23	ENSCABG00000002668	MRPL10 (ENSCABG00000002666) #25	OSBPL7 (ENSCABG00000002659) #26	TBX21 (ENSCABG00000002657) #27	TBKBP1 (ENSCABG00000002655) #28	KPNB1 (ENSCABG00000002648) #29	NPEPPS (ENSCABG00000002641) #30	MRPL45 (ENSCABG00000002638) #31	ENSCABG00000002635 #32	SOCS7 (ENSCABG00000002631) #33	ARHGAP23 (ENSCABG00000002627) #34	SRCIN1 (ENSCABG00000002622) #35	ENSCABG00000002620 #37	MLLT6 (ENSCABG00000002618)
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Australian saltwater crocodile	MODERN SPECIES	60	HOXB5 (ENSCPRG00005007222) #8	HOXB4 (ENSCPRG00005007218) #9	HOXB3 (ENSCPRG00005007217)	HOXB2 (ENSCPRG00005007216) #11	HOXB1 (ENSCPRG00005007211) #12	SKAP1 (ENSCPRG00005007201) #13	SNX11 (ENSCPRG00005007185) #15	CBX1 (ENSCPRG00005007181) #16	NFE2L1 (ENSCPRG00005007178) #17	COPZ2 (ENSCPRG00005007172) #18	CDK5RAP3 (ENSCPRG00005007163) #19	PRR15L (ENSCPRG00005007160)	PNPO (ENSCPRG00005007155) #20	ENSCPRG00005007151	SP2 (ENSCPRG00005007150) #21	SP6 (ENSCPRG00005007147) #22	SCRN2 (ENSCPRG00005007138) #23	LRRC46 (ENSCPRG00005007132) #24	MRPL10 (ENSCPRG00005007129) #25	OSBPL7 (ENSCPRG00005007117) #26	TBX21 (ENSCPRG00005007057) #27	TBKBP1 (ENSCPRG00005007027) #28	KPNB1 (ENSCPRG00005006998) #29
Aves	ANCESTRAL SPECIES	26	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000158988.a.b	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000000713 #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000158572	ENSGT00940000165589
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000000713 #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b.c #34	ENSGT00940000157961.C #35	ENSGT00940000158572	ENSGT00940000165589
Passeriformes_g	ANCESTRAL SPECIES	50	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000000713 #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b.c #34	ENSGT00940000157961.C #35	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730
Passeroidea	ANCESTRAL SPECIES	49	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000000713 #19	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b.d #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572	ENSGT00940000165589
Zebra finch	MODERN SPECIES	20	ENSTGUG00000026217	HOXB9 (ENSTGUG00000003448)	HOXB8 (ENSTGUG00000003441)	ENSTGUG00000020107	HOXB6 (ENSTGUG00000003435) #7	HOXB5 (ENSTGUG00000003430) #8	ENSTGUG00000021689	HOXB2 (ENSTGUG00000022054) #11	HOXB1 (ENSTGUG00000025694) #12	SKAP1 (ENSTGUG00000029482) #13	ENSTGUG00000026594 #15	NFE2L1 (ENSTGUG00000014715) #17	CDK5RAP3 (ENSTGUG00000016909) #19	PNPO (ENSTGUG00000027633) #20	SP2 (ENSTGUG00000024446) #21	SP6 (ENSTGUG00000027194) #22	SCRN2 (ENSTGUG00000021900) #23	ENSTGUG00000029748	ENSTGUG00000028791 #26	ENSTGUG00000021758 #26	ENSTGUG00000021058 #27	TBKBP1 (ENSTGUG00000026971) #28	KPNB1 (ENSTGUG00000003387) #29	NPEPPS (ENSTGUG00000003339) #30	MRPL45 (ENSTGUG00000003330) #31	GPR179 (ENSTGUG00000020188) #32	SOCS7 (ENSTGUG00000003337) #33	ENSTGUG00000028017	ARHGAP23 (ENSTGUG00000023504) #34	SRCIN1 (ENSTGUG00000017145) #35	ENSTGUG00000022944
Great tit	MODERN SPECIES	304															SP2 (ENSPMJG00000005848) #21	SP6 (ENSPMJG00000005847) #22	SCRN2 (ENSPMJG00000005843) #23	ENSPMJG00000005834 #24	ENSPMJG00000005831	ENSPMJG00000005821 #26	ENSPMJG00000005817 #26	ENSPMJG00000005815	TBKBP1 (ENSPMJG00000005810) #28
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439 #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Kakapo	MODERN SPECIES	12	SMARCD2 (ENSSHBG00005010280)	PSMC5 (ENSSHBG00005010198)	FTSJ3 (ENSSHBG00005010153)	ENSSHBG00005010109	ENSSHBG00005010082	DLX3 (ENSSHBG00005010048)	ENSSHBG00005010020	ENSSHBG00005009990	ENSSHBG00005009969	ENSSHBG00005009950 #15	ENSSHBG00005009936 ##17	CDK5RAP3 (ENSSHBG00005009863) #19	PRR15L (ENSSHBG00005009820)	PNPO (ENSSHBG00005009805) #20	SP2 (ENSSHBG00005009786) #21	SP6 (ENSSHBG00005009774) #22	SCRN2 (ENSSHBG00005009758) #23	ENSSHBG00005009744 #24	MRPL10 (ENSSHBG00005009737) #25	OSBPL7 (ENSSHBG00005009643) #26	TBX21 (ENSSHBG00005009578) #27	ENSSHBG00005009566 #28	ENSSHBG00005009552 #28	KPNB1 (ENSSHBG00005009532) #29	NPEPPS (ENSSHBG00005009482) #30	MRPL45 (ENSSHBG00005009448) #31	GPR179 (ENSSHBG00005009413) #32	SOCS7 (ENSSHBG00005009381) #33	ARHGAP23 (ENSSHBG00005009300) #34	SRCIN1 (ENSSHBG00005009216) #35	ENSSHBG00005009171 #37
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Anatidae	ANCESTRAL SPECIES	70	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26
Pink-footed goose	MODERN SPECIES	305	HOXB7 (ENSABRG00000000473)	HOXB6 (ENSABRG00000000480) #7	HOXB5 (ENSABRG00000000485) #8	HOXB4 (ENSABRG00000000495) #9	HOXB3 (ENSABRG00000000506)	HOXB2 (ENSABRG00000000517) #11	HOXB1 (ENSABRG00000000522) #12	SKAP1 (ENSABRG00000000558) #13	SNX11 (ENSABRG00000000576) #15	CBX1 (ENSABRG00000000584) #16	NFE2L1 (ENSABRG00000000594) #17	ENSABRG00000000606 #18	CDK5RAP3 (ENSABRG00000000636) #19	PNPO (ENSABRG00000000676) #20	SP2 (ENSABRG00000001034) #21	SP6 (ENSABRG00000001100) #22	SCRN2 (ENSABRG00000001107) #23	LRRC46 (ENSABRG00000001138) #24	MRPL10 (ENSABRG00000001154) #25	ENSABRG00000001168 #26
Duck	MODERN SPECIES	2057																SP6 (ENSAPLG00000020678) #22
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000161230	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34	ENSGT00940000157961.C #35	ENSGT00940000153451.a.a.a #37	ENSGT00940000158572
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000161230	ENSGT00940000161108 #7	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152.d #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000157439.i #26	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246.c.a #30	ENSGT00940000155246.c.b #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157961.C #35	ENSGT00940000158572	ENSGT00940000165589
Chicken	MODERN SPECIES	19	HOXB7 (ENSGALG00010023381)	HOXB6 (ENSGALG00010023383) #7	HOXB5 (ENSGALG00010023394) #8	HOXB4 (ENSGALG00010023415) #9	HOXB3 (ENSGALG00010023428)	HOXB2 (ENSGALG00010023438) #11	HOXB1 (ENSGALG00010023454) #12	SKAP1 (ENSGALG00010021479) #13	SNX11 (ENSGALG00010021554) #15	CBX1 (ENSGALG00010021565) #16	NFE2L1 (ENSGALG00010021583) #17	CDK5RAP3 (ENSGALG00010023706) #19	PRR15L (ENSGALG00010023722)	PNPO (ENSGALG00010023726) #20	SP2 (ENSGALG00010023730) #21	SP6 (ENSGALG00010023742) #22	SCRN2 (ENSGALG00010023770) #23	LRRC46 (ENSGALG00010023784) #24	MRPL10 (ENSGALG00010023807) #25	OSBPL7 (ENSGALG00010023841) #26	TBX21 (ENSGALG00010023883) #27	TBKBP1 (ENSGALG00010023903) #28	KPNB1 (ENSGALG00010023927) #29	ENSGALG00010024010 #30	ENSGALG00010021150 #30	MRPL45 (ENSGALG00010024039) #31	ENSGALG00010024047 #32	SOCS7 (ENSGALG00010024122) #33	SRCIN1 (ENSGALG00010024162) #35	MLLT6 (ENSGALG00010022085)	CISD3 (ENSGALG00010022101)
Japanese quail	MODERN SPECIES	19	HOXB8 (ENSCJPG00005019366)	HOXB7 (ENSCJPG00005019367)	HOXB6 (ENSCJPG00005019368) #7	HOXB5 (ENSCJPG00005019369) #8	HOXB4 (ENSCJPG00005019371) #9	HOXB3 (ENSCJPG00005019372)	HOXB2 (ENSCJPG00005019373) #11	HOXB1 (ENSCJPG00005019374) #12	SKAP1 (ENSCJPG00005019375) #13	SNX11 (ENSCJPG00005019376) #15	CBX1 (ENSCJPG00005019377) #16	NFE2L1 (ENSCJPG00005019378) #17	CDK5RAP3 (ENSCJPG00005019379) #19	PRR15L (ENSCJPG00005019386)	SP2 (ENSCJPG00005019387) #21	SP6 (ENSCJPG00005019388) #22	SCRN2 (ENSCJPG00005019389) #23	LRRC46 (ENSCJPG00005019390) #24	MRPL10 (ENSCJPG00005019391) #25	TBX21 (ENSCJPG00005019401) #27	KPNB1 (ENSCJPG00005000892) #29	NPEPPS (ENSCJPG00005000955) #30	MRPL45 (ENSCJPG00005000986) #31	ENSCJPG00005001001 #32	SOCS7 (ENSCJPG00005001011) #33	ARHGAP23 (ENSCJPG00005001122) #34	SRCIN1 (ENSCJPG00005002304) #35	ENSCJPG00005002305	ENSCJPG00005002306 #37	MLLT6 (ENSCJPG00005002307)	PCGF2 (ENSCJPG00005002309)
Anura	ANCESTRAL SPECIES	15	ENSGT00940000158354 #8	ENSGT00940000162072 #9	ENSGT00940000159774	ENSGT00940000155029.c.b #11	ENSGT00940000159503 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #15	ENSGT00940000154152 #16	ENSGT00950000182892.a.b.a.a #17	ENSGT00390000004405.b #18	ENSGT00390000000713 #19	ENSGT00940000154534.a	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590 #21	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00390000000603 #25	ENSGT00940000160397 #27	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065.c	ENSGT00680000100037	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000157982.b #34
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000023190	HOXB3 (ENSLLEG00000023143)	HOXB2 (ENSLLEG00000023108) #11	HOXB1 (ENSLLEG00000023048) #12	SKAP1 (ENSLLEG00000022705) #13	SNX11 (ENSLLEG00000022564) #15	CBX1 (ENSLLEG00000022470) #16	NFE2L1 (ENSLLEG00000022364) #17	COPZ2 (ENSLLEG00000022282) #18	CDK5RAP3 (ENSLLEG00000022067) #19	PRR15L (ENSLLEG00000022006)	PNPO (ENSLLEG00000021591) #20	ENSLLEG00000021466	SP2 (ENSLLEG00000021414) #21	ENSLLEG00000021350	SP6 (ENSLLEG00000021323) #22	SCRN2 (ENSLLEG00000021262) #23	ENSLLEG00000024888 #25	TBX21 (ENSLLEG00000024840) #27	ENSLLEG00000024817	TBKBP1 (ENSLLEG00000024678) #28	ENSLLEG00000024653	KPNB1 (ENSLLEG00000024335) #29	ENSLLEG00000023877 #30	ENSLLEG00000023810	MRPL45 (ENSLLEG00000023547) #31	ENSLLEG00000023454 #32	ENSLLEG00000023420	ENSLLEG00000023353	SOCS7 (ENSLLEG00000023150) #33	ARHGAP23 (ENSLLEG00000022344) #34
Frog	MODERN SPECIES	1	hoxb5 (ENSXETG00000021978) #8	hoxb4 (ENSXETG00000021973) #9	hoxb3 (ENSXETG00000021967)	hoxb2 (ENSXETG00000027353) #11	hoxb1 (ENSXETG00000049208) #12	skap1 (ENSXETG00000027357) #13	snx11 (ENSXETG00000038807) #15	cbx1 (ENSXETG00000021962) #16	nfe2l1 (ENSXETG00000021958) #17	copz2 (ENSXETG00000021957) #18	prr15l (ENSXETG00000032726)	cdk5rap3 (ENSXETG00000027359) #19	XB5788060 [provisional] (ENSXETG00000027360)	sp2 (ENSXETG00000021952) #21	ENSXETG00000043506	sp6 (ENSXETG00000048156) #22	scrn2 (ENSXETG00000021947) #23	lrrc46 (ENSXETG00000045741) #24	tbx21 (ENSXETG00000041059) #27	mrpl10 (ENSXETG00000014749) #25	ENSXETG00000047787	pcgf2 (ENSXETG00000014746)	mllt6 (ENSXETG00000014744)	ENSXETG00000039202 #37	srcin1 (ENSXETG00000014743) #35	ENSXETG00000047667	arhgap23 (ENSXETG00000014740) #34	socs7 (ENSXETG00000034343) #33	gpr179 (ENSXETG00000033123) #32	mrpl45 (ENSXETG00000014731) #31	ENSXETG00000036628
Coelacanth	MODERN SPECIES	278	HOXB6 (ENSLACG00000014999) #7	ENSLACG00000014942	HOXB3 (ENSLACG00000014824)	HOXB2 (ENSLACG00000014790) #11	HOXB1 (ENSLACG00000014698) #12	SNX11 (ENSLACG00000011068) #15	CBX1 (ENSLACG00000010753) #16	NFE2L1 (ENSLACG00000009960) #17	COPZ2 (ENSLACG00000009416) #18	CDK5RAP3 (ENSLACG00000007698) #19	ENSLACG00000007611	ENSLACG00000007610	PRR15L (ENSLACG00000007448)	PNPO (ENSLACG00000007066) #20	SP2 (ENSLACG00000006434) #21	SP6 (ENSLACG00000004875) #22	SCRN2 (ENSLACG00000004181) #23	CHCHD10 (ENSLACG00000001878)	aspdh (ENSLACG00000001117)
Actinopterygii	ANCESTRAL SPECIES	60								ENSGT00940000153451.a.a.a #37	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055	ENSGT00390000004690.a.a	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000172406	ENSGT00940000157439 #26	ENSGT00940000166447	ENSGT00940000153704.B #28	ENSGT00550000074898 #29	ENSGT00940000155246 #30	ENSGT00390000012679 #31	ENSGT00940000160776 #32	ENSGT00940000156314 #33	ENSGT00940000159590 #21	ENSGT00390000011219 #20	ENSGT00940000154534.b.b	ENSGT00390000000713 #19
Neopterygii	ANCESTRAL SPECIES	300												ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055	ENSGT00390000004690.a.a	ENSGT00940000161498 #22	ENSGT00390000013474.b.a #23	ENSGT00940000161315 #24	ENSGT00940000159730	ENSGT00940000165589	ENSGT00940000158572	ENSGT00940000153451.a.a.a #37
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000161498 #22
Clupeocephala	ANCESTRAL SPECIES	402												ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00940000159874	ENSGT00550000074820	ENSGT00940000159730	ENSGT00940000165589.b
Otomorpha	ANCESTRAL SPECIES	509												ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00940000159874	ENSGT00550000074820
Clupeiformes	ANCESTRAL SPECIES	156												ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155258	ENSGT00950000182969.B.c.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.b
Denticle herring	MODERN SPECIES	13	ddx55 (ENSDCDG00000002419)	ptpn11a (ENSDCDG00000002696)	pla2g3 (ENSDCDG00000003288)	ENSDCDG00000003431	pitpnb (ENSDCDG00000003830)	ENSDCDG00000003871	NAA25 (ENSDCDG00000003874)	m17 (ENSDCDG00000003885)	ENSDCDG00000003886	hk1 (ENSDCDG00000003903)	ARHGDIA (ENSDCDG00000004015)	QPRT (ENSDCDG00000004020)	ENSDCDG00000004031	PLA2G12B (ENSDCDG00000004183)	scrn2 (ENSDCDG00000004197) #23	sp6 (ENSDCDG00000004199) #22	cwc25 (ENSDCDG00000004203)	psmb3 (ENSDCDG00000004206)	PIP4K2B (ENSDCDG00000004217)	ENSDCDG00000004348	ENSDCDG00000004351	ENSDCDG00000004358	si:dkey-5n18.1 (ENSDCDG00000004362)	IGFBP4 (ENSDCDG00000004370)	SMARCE1 (ENSDCDG00000004373)	ccr7 (ENSDCDG00000004439)	TNS4 (ENSDCDG00000004441)	KRT222 (ENSDCDG00000004445)	krt96 (ENSDCDG00000004448)	krt94 (ENSDCDG00000004451)	krt15 (ENSDCDG00000004452)
Atlantic herring	MODERN SPECIES	16	ENSCHAG00000002588	ENSCHAG00000002644	ENSCHAG00000002729	ENSCHAG00000002792	ENSCHAG00000002889	ENSCHAG00000002944	ENSCHAG00000003006	ENSCHAG00000003027	ENSCHAG00000003068	ENSCHAG00000003117	ENSCHAG00000003144	ENSCHAG00000003180	ENSCHAG00000003266	ENSCHAG00000003296	scrn2 (ENSCHAG00000003349) #23	ENSCHAG00000003383 #22	psmb3 (ENSCHAG00000003412)	PIP4K2B (ENSCHAG00000003504)	ENSCHAG00000004606	ENSCHAG00000004623	ENSCHAG00000004654	cwc25 (ENSCHAG00000004675)	ENSCHAG00000004690	ENSCHAG00000004712	si:dkey-5n18.1 (ENSCHAG00000004737)	IGFBP4 (ENSCHAG00000004746)	ENSCHAG00000004825	ccr7 (ENSCHAG00000005012)	ENSCHAG00000005033	ENSCHAG00000005053	ENSCHAG00000005108
Otophysi	ANCESTRAL SPECIES	406																ENSGT00940000161498 #22	ENSGT00940000154838.A.f.b.a	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d	ENSGT00640000091701	ENSGT00390000002215.i.a
Characiphysae	ANCESTRAL SPECIES	234																ENSGT00940000161498 #22	ENSGT00940000154838.A.f.b.a	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d	ENSGT00640000091701	ENSGT00390000002215.i.a
Characiphysae_b	ANCESTRAL SPECIES	277																ENSGT00940000161498 #22	ENSGT00940000154838.A.f.b.a	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d	ENSGT00640000091701
Characoidei	ANCESTRAL SPECIES	382																ENSGT00940000161498 #22	ENSGT00940000154838.A.f.b.a	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d	ENSGT00640000091701
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	3261																sp6 (ENSPNAG00000026790) #22
Red-bellied piranha	MODERN SPECIES	1020															ENSPNAG00000017164	sp6 (ENSPNAG00000017174) #22	ENSPNAG00000017191
Red-bellied piranha	MODERN SPECIES	3285																sp6 (ENSPNAG00000026694) #22
Electric eel	MODERN SPECIES	424												ears2 (ENSEEEG00000016576)	ENSEEEG00000016577	ENSEEEG00000016574	cdc37 (ENSEEEG00000016572)	sp6 (ENSEEEG00000016571) #22	ENSEEEG00000016570	BFAR (ENSEEEG00000016569)	txndc11 (ENSEEEG00000016568)	ENSEEEG00000016566	ENSEEEG00000016565	ENSEEEG00000016562	ENSEEEG00000016559	ENSEEEG00000016556	LYPD1 (ENSEEEG00000016555)
Channel catfish	MODERN SPECIES	18						ENSIPUG00000013595	ENSIPUG00000013582	bfar (ENSIPUG00000013569)	ENSIPUG00000013557	txndc11 (ENSIPUG00000013523)	ENSIPUG00000013508	cdc37 (ENSIPUG00000013465)	ENSIPUG00000013452	gga2 (ENSIPUG00000013423)	ears2 (ENSIPUG00000013399)	SP6 (ENSIPUG00000013392) #22	ENSIPUG00000012996	ENSIPUG00000012915	ENSIPUG00000012898	LYPD1 (ENSIPUG00000012881)	ENSIPUG00000012841	ENSIPUG00000012817	TMC7 (ENSIPUG00000012788)	wfikkn1 (ENSIPUG00000012777)	ENSIPUG00000012764	ENSIPUG00000012734	ENSIPUG00000012715	cyp3a65 (ENSIPUG00000012681)	cyp3a65 (ENSIPUG00000012663)	cyp3a27 (ENSIPUG00000012596)	ENSIPUG00000012577
Cyprinoidei	ANCESTRAL SPECIES	234															ENSGT00950000182957.b.a.b.a.a	ENSGT00940000161498 #22	ENSGT00940000154838.A.f.b.a	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d	ENSGT00640000091701	ENSGT00390000002215.i.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1656																ENSGT00940000161498.c #22	ENSGT00940000154838.A.f.b.a.e.a.a
Cyprininae_a	ANCESTRAL SPECIES	1272																ENSGT00940000161498.c #22	ENSGT00940000154838.A.f.b.a.e.a.a
Common carp reference	MODERN SPECIES	27	ENSCCRG00000067189	ENSCCRG00000075413	ENSCCRG00000059004	ENSCCRG00000062508	ENSCCRG00000053280	ENSCCRG00000068819	ENSCCRG00000057705	ENSCCRG00000037713	ENSCCRG00000060598	ENSCCRG00000044677	ENSCCRG00000058017	cyp3a65 (ENSCCRG00000070397)	ENSCCRG00000068565	ENSCCRG00000060371	ENSCCRG00000037500	sp6 (ENSCCRG00000025655) #22	ENSCCRG00000031811	ENSCCRG00000059920	ENSCCRG00000079920	ENSCCRG00000052843	ENSCCRG00000071845	ENSCCRG00000056058	ENSCCRG00000029563	ENSCCRG00000058812	ENSCCRG00000057204	ENSCCRG00000081147	ENSCCRG00000021812	ENSCCRG00000075908	ENSCCRG00000049873	ENSCCRG00000070910	ENSCCRG00000058823
Golden-line barbel	MODERN SPECIES	1099										ENSSGRG00000009918	ENSSGRG00000009919	txndc11 (ENSSGRG00000009921)	ENSSGRG00000009949	ENSSGRG00000009950	ENSSGRG00000009953	sp6 (ENSSGRG00000009957) #22	ENSSGRG00000009958
Cyprininae	ANCESTRAL SPECIES	251	ENSGT00940000160542.i	ENSGT00940000160542.j	ENSGT00940000155412.a.a.b.a.b	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.a.a.a.a.a.a.b.a.b.b.a.a.a.b.b.b.b.a	ENSGT00390000016020	ENSGT00940000159148.b	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b.b	ENSGT00390000005386.r.a	ENSGT00940000153167.A.b	ENSGT00530000063205.A	ENSGT00390000002365.a	ENSGT00940000156947.i	ENSGT00950000182958.b.a.a.a.b.e.a.f	ENSGT00950000182957.b.a.b.a.a.b	ENSGT00940000161498.d #22	ENSGT00940000154838.A.f.b.a.f	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d.a	ENSGT00640000091701	ENSGT00390000002215.i.a.h	ENSGT00390000013443.c.j	ENSGT00390000009759
Goldfish	MODERN SPECIES		MFAP4 (ENSCARG00000002923)	ENSCARG00000002894	ENSCARG00000002876	ENSCARG00000002862	lpar2b (ENSCARG00000002845)	ENSCARG00000002830	rdh8b (ENSCARG00000002819)	ENSCARG00000002808	ENSCARG00000002798	txndc11 (ENSCARG00000002757)	eri2 (ENSCARG00000002741)	thumpd1 (ENSCARG00000002728)	ENSCARG00000002721	cyp3a65 (ENSCARG00000002115)	ENSCARG00000001901	sp6 (ENSCARG00000001895) #22	ENSCARG00000001891	ENSCARG00000001888	ENSCARG00000001877	wfikkn1 (ENSCARG00000001875)	TMC7 (ENSCARG00000001869)	ENSCARG00000001857	LYPD1 (ENSCARG00000001850)	cdc37 (ENSCARG00000001838)	ENSCARG00000001818	slc27a1b (ENSCARG00000001609)	ENSCARG00000001543	ENSCARG00000001542	ENSCARG00000001513	ENSCARG00000001501	ENSCARG00000001498
Cyprininae_a	ANCESTRAL SPECIES	321	ENSGT00940000160446.e.b	ENSGT00940000163377.a.b.a	ENSGT00950000182975.a.b.a.b.a.a.b	ENSGT01050000244941.B.c.a.b	ENSGT00530000063777.a.a.a	ENSGT00940000160542.j	ENSGT00940000155412.a.a.b.a.b	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.a.a.a.a.a.a.b.a.b.b.a.a.a.b.b.b.b.a	ENSGT00390000016020	ENSGT00940000153167.A.b	ENSGT00530000063205.A	ENSGT00390000002365.a	ENSGT00940000156947.i	ENSGT00950000182958.b.a.a.a.b.e.a.f	ENSGT00950000182957.b.a.b.a.a.b	ENSGT00940000161498.d #22	ENSGT00940000154838.A.f.b.a.f	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00640000091701	ENSGT00940000160859.d.a	ENSGT00390000002215.i.a.h	ENSGT00390000013443.c.j.a	ENSGT00390000009759
Common carp reference	MODERN SPECIES	22	lpar2b (ENSCCRG00000046566)	akap8l (ENSCCRG00000060911)	ENSCCRG00000046581	ENSCCRG00000082118	ENSCCRG00000072939	ENSCCRG00000056294	ENSCCRG00000071663	ENSCCRG00000044662	ENSCCRG00000044666	ENSCCRG00000056795	ENSCCRG00000081662	cyp3a65 (ENSCCRG00000044727)	ENSCCRG00000046235	ENSCCRG00000080527	ENSCCRG00000070801	sp6 (ENSCCRG00000038535) #22	ENSCCRG00000025509	ENSCCRG00000013168	ENSCCRG00000073794	ENSCCRG00000034864	ENSCCRG00000081323	ENSCCRG00000062958	ENSCCRG00000062544	ENSCCRG00000079866	ENSCCRG00000000044	ENSCCRG00000067200	ENSCCRG00000000041	ENSCCRG00000000042	ENSCCRG00000060402	ENSCCRG00000009903	ENSCCRG00000058282
Golden-line barbel	MODERN SPECIES	1831															ENSSGRG00000029707	sp6 (ENSSGRG00000029706) #22	ENSSGRG00000029704	wfikkn1 (ENSSGRG00000029703)	TMC7 (ENSSGRG00000029702)
Zebrafish	MODERN SPECIES		akap8l (ENSDARG00000099635)	ENSDARG00000099741	olfm2b (ENSDARG00000102825)	ENSDARG00000098567	col5a3b (ENSDARG00000101816)	rdh8b (ENSDARG00000105060)	txndc11 (ENSDARG00000101291)	parn (ENSDARG00000102634)	ENSDARG00000102091	cyp3a65 (ENSDARG00000103295)	ENSDARG00000100739	ENSDARG00000100190	ENSDARG00000099024	ENSDARG00000099538	ENSDARG00000098620	sp6 (ENSDARG00000099880) #22	ENSDARG00000098899	wfikkn1 (ENSDARG00000101364)
Euteleosteomorpha	ANCESTRAL SPECIES	18	ENSGT00940000176115	ENSGT00390000011880	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155258
Protacanthopterygii	ANCESTRAL SPECIES	76	ENSGT00940000155563.k.b.a.a	ENSGT00390000005412	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155258
Salmoninae	ANCESTRAL SPECIES	394			ENSGT00640000091541.z.a.b	ENSGT00940000169618	ENSGT00940000157351.d	ENSGT00940000159603.b.d	ENSGT00550000075186.c	ENSGT00390000018868.B.b.b	ENSGT00390000006233.c.b.z.c	ENSGT00940000161425.j	ENSGT00390000002761.c.a	ENSGT00940000154838.A.f.b.a.g.b	ENSGT00940000157396.ic.a	ENSGT00390000008798.d.a.f	ENSGT00390000013474.b.a.e.b #23	ENSGT00940000161498 #22	ENSGT00440000039055.gb	ENSGT00550000074820.c	ENSGT00940000159874.g	ENSGT00940000159730.i	ENSGT00940000165589.b.a.a	ENSGT00940000165589.a	ENSGT00940000158572.k.a	ENSGT00940000156782.d.b	ENSGT00940000159647.a	ENSGT00390000003628.a.a.b	ENSGT01030000234667.a.a.a.a.b.e	ENSGT00940000160142.b	ENSGT00940000159655.k	ENSGT00950000182969.B.c.a.b.a
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	188						ENSGT00550000075186.d.a	ENSGT00390000018868.B.b.a	ENSGT00390000006233.c.b.z.d	ENSGT00940000161425.i	ENSGT00390000002761.c.b	ENSGT00940000154838.A.f.b.a.h	ENSGT00940000157396.ic.b	ENSGT00390000008798.d.a.e	ENSGT01090000260890	ENSGT00390000013474.b.a.e.a #23	ENSGT00940000161498.e #22	ENSGT00440000039055.fb
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000159603.b.c	ENSGT00550000075186.d.a	ENSGT00390000018868.B.b.a	ENSGT00390000006233.c.b.z.d	ENSGT00940000161425.i	ENSGT00390000002761.c.b	ENSGT00990000210450.B	ENSGT00940000154838.A.f.b.a.h.a	ENSGT00940000154838.A.f.b.a.g.a	ENSGT00940000154838.A.f.b.a.h.b	ENSGT00940000157396.ic.b	ENSGT00390000008798.d.a.e	ENSGT01090000260890	ENSGT00390000013474.b.a.e.a #23	ENSGT00940000163149.a.a.b.c.b.a.b	ENSGT00940000161498.e #22	ENSGT00440000039055.fb	ENSGT00440000039055.gb.a	ENSGT00550000074820.d	ENSGT00940000159874.h	ENSGT00940000159730.j	ENSGT00940000165589.a	ENSGT00940000158572.k.a	ENSGT01010000229070	ENSGT00390000017614.e.b	ENSGT00940000156782.d.a.a.b	ENSGT00940000159647.a	ENSGT00390000003628.a.a.b	ENSGT01030000234667.a.a.a.a.b.e	ENSGT00940000160142.b	ENSGT00940000159655.k
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000046750	p4hb (ENSSSAG00000046822)	ENSSSAG00000118513	ENSSSAG00000086322	ENSSSAG00000046936	ENSSSAG00000046941	pp12c (ENSSSAG00000046949)	ENSSSAG00000046981	ENSSSAG00000046987	ENSSSAG00000046996	ENSSSAG00000047081	PG12B (ENSSSAG00000047184)	ENSSSAG00000047199	ENSSSAG00000046464 #23	ENSSSAG00000094721	ENSSSAG00000103168 #22	ENSSSAG00000104475	ENSSSAG00000047349	PCGF2 (ENSSSAG00000091923)	ENSSSAG00000094014	ENSSSAG00000048006	ENSSSAG00000048012	ENSSSAG00000048026	ENSSSAG00000116892	ENSSSAG00000048059	SMARCE1 (ENSSSAG00000048097)	ENSSSAG00000048324	TNS4 (ENSSSAG00000048340)	ENSSSAG00000048355	ENSSSAG00000048372	ENSSSAG00000048387
River trout	MODERN SPECIES	31	ENSSTUG00000020975	p4hb (ENSSTUG00000020547)	ppp1r27b (ENSSTUG00000020530)	anapc11 (ENSSTUG00000020524)	ENSSTUG00000020521	ARHGDIA (ENSSTUG00000020513)	ppp1r12c (ENSSTUG00000020378)	QPRT (ENSSTUG00000020364)	ENSSTUG00000020350	ENSSTUG00000020181	ENSSTUG00000020012	ENSSTUG00000019984	PLA2G12B (ENSSTUG00000019967)	ENSSTUG00000019960	scrn2 (ENSSTUG00000019949) #23	sp6 (ENSSTUG00000019942) #22	cwc25 (ENSSTUG00000019921)	psmb3 (ENSSTUG00000019890)	PIP4K2B (ENSSTUG00000019759)	PCGF2 (ENSSTUG00000019738)	ENSSTUG00000019730	MLLT6 (ENSSTUG00000019699)	ENSSTUG00000019683	ENSSTUG00000019676	IGFBP4 (ENSSTUG00000019661)	SMARCE1 (ENSSTUG00000019645)	ccr7 (ENSSTUG00000019632)	TNS4 (ENSSTUG00000019615)	KRT222 (ENSSTUG00000019598)	ENSSTUG00000019577	krt94 (ENSSTUG00000019561)
Oncorhynchus	ANCESTRAL SPECIES	103				ENSGT00940000157351.c.b	ENSGT00940000159603.b.c	ENSGT00550000075186.c.a	ENSGT00390000018868.B.b.a	ENSGT00390000006233.c.b.z.d	ENSGT00940000161425.i	ENSGT00390000002761.c.b	ENSGT00940000154838.A.f.b.a.h	ENSGT00940000154838.A.f.b.a.g.a	ENSGT00390000008798.d.a.e	ENSGT01090000260890	ENSGT00940000163149.a.a.b.c.b.a.a	ENSGT00940000161498.e #22	ENSGT00440000039055.fb	ENSGT00940000159874.h.a.a	ENSGT00940000159730.j	ENSGT00990000204927	ENSGT00940000165589.a	ENSGT00940000158572.k.a	ENSGT01010000229070	ENSGT00940000156782.d.b.b	ENSGT00940000159647.a	ENSGT00390000003628.a.a.b	ENSGT01030000234667.a.a.a.a.b.e	ENSGT00940000160142.b	ENSGT00940000159655.k	ENSGT00950000182969.B.c.a.b.a	ENSGT00940000155258.b.a
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000008945	ENSOMYG00000008812	PPP1R27 (ENSOMYG00000008603)	ENSOMYG00000008590	ENSOMYG00000008573	ARHGDIA (ENSOMYG00000008547)	ENSOMYG00000008493	ENSOMYG00000008419	ENSOMYG00000047928	ENSOMYG00000064657	ENSOMYG00000070835	ENSOMYG00000049462	ENSOMYG00000069035	ENSOMYG00000007849 #23	ENSOMYG00000007788	ENSOMYG00000007773 #22	ENSOMYG00000007750	ENSOMYG00000007720	ENSOMYG00000007552	ENSOMYG00000007316	ENSOMYG00000054408	ENSOMYG00000076301	ENSOMYG00000071206	ENSOMYG00000007260	ENSOMYG00000069383	ENSOMYG00000007234	ENSOMYG00000007110	ENSOMYG00000047975	SMARCE1 (ENSOMYG00000007092)	ENSOMYG00000007053	TNS4 (ENSOMYG00000060429)
Oncorhynchus_a	ANCESTRAL SPECIES	136								ENSGT00390000006233.c.b.z.d	ENSGT00940000161425.i	ENSGT00390000002761.c.b	ENSGT00940000154838.A.f.b.a.h	ENSGT00390000008798.d.a.e	ENSGT01090000260890	ENSGT00390000013474.b.a.f #23	ENSGT00940000163149.a.a.b.c.b.a.a	ENSGT00940000161498.e #22	ENSGT00440000039055.gb.a	ENSGT00550000074820.d	ENSGT00940000159874.h.b	ENSGT00940000159874.h.a.a	ENSGT00940000159730.j	ENSGT00990000204927	ENSGT00940000165589.a	ENSGT00940000158572.k.a	ENSGT01010000229070	ENSGT00940000156782.d.b.a	ENSGT00940000159647.a	ENSGT00390000003628.a.a.b	ENSGT01030000234667.a.a.a.a.b.e	ENSGT00940000160142.b	ENSGT00940000159655.k
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2905	ENSOTSG00005039664	ENSOTSG00005039666	IGFBP4 (ENSOTSG00005039667)	ENSOTSG00005039668	ccr7 (ENSOTSG00005039669)	ENSOTSG00005039670	ENSOTSG00005039671	ENSOTSG00005039672	ENSOTSG00005039673	ENSOTSG00005039675	ENSOTSG00005039680	ENSOTSG00005039683	psmb3 (ENSOTSG00005039706)	ENSOTSG00005039708 #23	ENSOTSG00005039709	sp6 (ENSOTSG00005039712) #22	ENSOTSG00005039713	ENSOTSG00005039715 #23	PLA2G12B (ENSOTSG00005039725)	ENSOTSG00005039728	ENSOTSG00005039731	ppp1r12c (ENSOTSG00005039732)	ARHGDIA (ENSOTSG00005039733)	ppp1r27b (ENSOTSG00005039734)	anapc11 (ENSOTSG00005039735)	ENSOTSG00005039736	p4hb (ENSOTSG00005039743)	ENSOTSG00005042676	ENSOTSG00005042677	ENSOTSG00005042680	samd8 (ENSOTSG00005043330)
Chinook salmon	MODERN SPECIES	2905	ENSOTSG00005035633	ENSOTSG00005035629	IGFBP4 (ENSOTSG00005035627)	ENSOTSG00005035626	ccr7 (ENSOTSG00005035624)	IGFBP4 (ENSOTSG00005035623)	ENSOTSG00005035622	ENSOTSG00005035618	ENSOTSG00005035616	ENSOTSG00005035607	ENSOTSG00005035606	ENSOTSG00005035605	psmb3 (ENSOTSG00005035603)	ENSOTSG00005035602 #23	ENSOTSG00005035601	sp6 (ENSOTSG00005035600) #22	ENSOTSG00005035599	ENSOTSG00005035598 #23	PLA2G12B (ENSOTSG00005035595)	ENSOTSG00005035594	ENSOTSG00005035593	ppp1r12c (ENSOTSG00005035592)	ARHGDIA (ENSOTSG00005035591)	ppp1r27b (ENSOTSG00005035589)	anapc11 (ENSOTSG00005035587)	ENSOTSG00005035585	p4hb (ENSOTSG00005033355)	ENSOTSG00005033349	ENSOTSG00005033343	ENSOTSG00005031118	samd8 (ENSOTSG00005031103)
Coho salmon	MODERN SPECIES	12	anapc11 (ENSOKIG00005031945)	ENSOKIG00005031960	ENSOKIG00005032020	ARHGDIA (ENSOKIG00005032029)	PPP1R12C (ENSOKIG00005032069)	QPRT (ENSOKIG00005032198)	ENSOKIG00005032221	ENSOKIG00005032471	ENSOKIG00005032585	PLA2G12B (ENSOKIG00005032597)	ENSOKIG00005032612	ENSOKIG00005032619	ENSOKIG00005032628	SCRN2 (ENSOKIG00005032633) #23	ENSOKIG00005032667	SP6 (ENSOKIG00005032683) #22	CWC25 (ENSOKIG00005032697)	psmb3 (ENSOKIG00005032720)	PIP4K2B (ENSOKIG00005032768)	PCGF2 (ENSOKIG00005032912)	ENSOKIG00005032925	ENSOKIG00005032948	ENSOKIG00005032961	ENSOKIG00005032987	ENSOKIG00005033032	IGFBP4 (ENSOKIG00005033053)	SMARCE1 (ENSOKIG00005033066)	ENSOKIG00005033083	ccr7 (ENSOKIG00005033088)	TNS4 (ENSOKIG00005033104)	ENSOKIG00005033121
Salmoninae_a	ANCESTRAL SPECIES	58	ENSGT00640000091541.y	ENSGT01070000253837.c	ENSGT00940000157351.c	ENSGT00940000159603.b.c	ENSGT00550000075186.c	ENSGT00390000018868.B.b.b	ENSGT00390000006233.c.b.z.c	ENSGT00940000161425.j	ENSGT00390000002761.c.a	ENSGT00990000210450.A	ENSGT00940000154838.A.f.b.a.g.b	ENSGT00940000157396.ic.a	ENSGT00390000008798.d.a.f	ENSGT00390000013474.b.a.e.b #23	ENSGT00940000163149.a.a.b.c.b.a.b	ENSGT00940000161498.f #22	ENSGT00440000039055.gb.b	ENSGT00550000074820.c	ENSGT00940000159874.g	ENSGT00940000159730.i	ENSGT00940000165589.b.a.a	ENSGT00440000039055.gb.a	ENSGT00550000074820.d	ENSGT00940000159874.h	ENSGT00940000159730.j	ENSGT00990000204927	ENSGT00940000165589.a	ENSGT00940000158572.k.a	ENSGT01010000229070	ENSGT00940000165589.b.b	ENSGT00940000158572.k.b
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00640000091541.z.a.a	ENSGT00940000169618	ENSGT00940000157351.d	ENSGT00940000159603.b.d	ENSGT00550000075186.c.b	ENSGT00390000018868.B.b.b	ENSGT00390000006233.c.b.z.c	ENSGT00940000161425.j	ENSGT00390000002761.c.a	ENSGT00990000210450.A	ENSGT00940000154838.A.f.b.a.g.b	ENSGT00390000008798.d.a.f	ENSGT01000000220975	ENSGT00390000013474.b.a.e.b #23	ENSGT00940000163149.a.a.b.c.b.a.b	ENSGT00940000161498.f #22	ENSGT00440000039055.gb.b	ENSGT00550000074820.c	ENSGT00940000159874.g	ENSGT00940000159730.i	ENSGT00940000165589.b.a.a	ENSGT00990000207434	ENSGT00940000158572.k.b	ENSGT00390000017614.e.b	ENSGT00940000156782.d.a.b	ENSGT00940000159647.b	ENSGT00390000003628.a.a.a	ENSGT01030000234667.a.a.a.a.b.f	ENSGT00940000160142.a	ENSGT00940000159655.l	ENSGT00950000182969.B.c.a.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00640000091541.z.a.a	ENSGT00940000169618	ENSGT00940000157351.d	ENSGT00940000159603.b.d	ENSGT00550000075186.c.b	ENSGT00390000018868.B.b.b	ENSGT00390000006233.c.b.z.c	ENSGT00940000161425.j	ENSGT00390000002761.c.a	ENSGT00990000210450.A	ENSGT00940000154838.A.f.b.a.g.b	ENSGT00390000008798.d.a.f	ENSGT01000000220975	ENSGT00390000013474.b.a.e.b #23	ENSGT00940000163149.a.a.b.c.b.a.b	ENSGT00940000161498.f #22	ENSGT00440000039055.gb.b	ENSGT00550000074820.c	ENSGT00940000159874.g	ENSGT00940000159730.i	ENSGT00940000165589.b.a.a	ENSGT00990000207434	ENSGT00940000158572.k.b	ENSGT00390000017614.e.b	ENSGT00940000156782.d.a.b	ENSGT00940000159647.b	ENSGT00390000003628.a.a.a	ENSGT01030000234667.a.a.a.a.b.f	ENSGT00940000160142.a	ENSGT00940000159655.l	ENSGT00950000182969.B.c.a.b.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	11	ENSOTSG00005027489	ENSOTSG00005027487	NPTX1 (ENSOTSG00005027484)	RPTOR (ENSOTSG00005027393)	p4hb (ENSOTSG00005027368)	ppp1r27b (ENSOTSG00005027361)	anapc11 (ENSOTSG00005027359)	ENSOTSG00005027358	ARHGDIA (ENSOTSG00005027357)	ppp1r12c (ENSOTSG00005027354)	ENSOTSG00005027352	PLA2G12B (ENSOTSG00005027350)	ENSOTSG00005027349	ENSOTSG00005027348 #23	ENSOTSG00005027347	sp6 (ENSOTSG00005027346) #22	cwc25 (ENSOTSG00005027343)	psmb3 (ENSOTSG00005027339)	PIP4K2B (ENSOTSG00005026977)	ENSOTSG00005026963	ENSOTSG00005026962	ENSOTSG00005026961	ENSOTSG00005026958	ENSOTSG00005026956	ENSOTSG00005026952	IGFBP4 (ENSOTSG00005026949)	SMARCE1 (ENSOTSG00005026946)	ccr7 (ENSOTSG00005026943)	TNS4 (ENSOTSG00005026939)	ENSOTSG00005026936	krt15 (ENSOTSG00005026935)
Chinook salmon	MODERN SPECIES	2905	ENSOTSG00005028873	NPTX1 (ENSOTSG00005028872)	RPTOR (ENSOTSG00005028547)	p4hb (ENSOTSG00005027850)	ppp1r27b (ENSOTSG00005027848)	anapc11 (ENSOTSG00005027847)	ENSOTSG00005027846	ARHGDIA (ENSOTSG00005027845)	ppp1r12c (ENSOTSG00005027844)	ENSOTSG00005027843	ENSOTSG00005027842	ENSOTSG00005027820	PLA2G12B (ENSOTSG00005027816)	ENSOTSG00005027777 #23	ENSOTSG00005043749	sp6 (ENSOTSG00005043748) #22	cwc25 (ENSOTSG00005043746)	psmb3 (ENSOTSG00005043741)	PIP4K2B (ENSOTSG00005043347)	ENSOTSG00005043346	ENSOTSG00005043345	ENSOTSG00005043344	ENSOTSG00005043343	ENSOTSG00005043342	ENSOTSG00005043341	IGFBP4 (ENSOTSG00005043340)	SMARCE1 (ENSOTSG00005043339)	ccr7 (ENSOTSG00005043338)	TNS4 (ENSOTSG00005043337)	ENSOTSG00005043336	ENSOTSG00005043335
Coho salmon	MODERN SPECIES		NPTX1 (ENSOKIG00005001856)	RPTOR (ENSOKIG00005002010)	ENSOKIG00005002358	P4HB (ENSOKIG00005002425)	ppp1r27b (ENSOKIG00005002562)	ANAPC11 (ENSOKIG00005002567)	ENSOKIG00005002575	ARHGDIA (ENSOKIG00005002583)	ppp1r12c (ENSOKIG00005002597)	QPRT (ENSOKIG00005002617)	ENSOKIG00005002623	ENSOKIG00005002683	PLA2G12B (ENSOKIG00005002973)	scrn2 (ENSOKIG00005002989) #23	ENSOKIG00005002997	sp6 (ENSOKIG00005002999) #22	cwc25 (ENSOKIG00005003004)	PSMB3 (ENSOKIG00005003016)	PIP4K2B (ENSOKIG00005003026)	PCGF2 (ENSOKIG00005003037)	ENSOKIG00005003056	ENSOKIG00005003062	ENSOKIG00005003073	ENSOKIG00005003089	ENSOKIG00005003097	IGFBP4 (ENSOKIG00005003101)	SMARCE1 (ENSOKIG00005003109)	CCR7 (ENSOKIG00005003116)	TNS4 (ENSOKIG00005003124)	ENSOKIG00005003136	ENSOKIG00005003141
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000020031	ENSOMYG00000073202	ENSOMYG00000019825	ENSOMYG00000019763	PPP1R27 (ENSOMYG00000019753)	ENSOMYG00000019747	ENSOMYG00000019738	ARHGDIA (ENSOMYG00000019732)	ENSOMYG00000019715	ENSOMYG00000019678	ENSOMYG00000019670	vig-2 (ENSOMYG00000019668)	ENSOMYG00000019504	ENSOMYG00000019466	ENSOMYG00000019451 #23	ENSOMYG00000019448 #22	ENSOMYG00000019433	ENSOMYG00000019357	ENSOMYG00000018845	ENSOMYG00000018775	ENSOMYG00000076882	ENSOMYG00000007297	ENSOMYG00000070049	ENSOMYG00000018661	ENSOMYG00000018622	ENSOMYG00000018551	ENSOMYG00000048619	SMARCE1 (ENSOMYG00000018571)	ENSOMYG00000018541	TNS4 (ENSOMYG00000018529)	ENSOMYG00000018514
Salmo	ANCESTRAL SPECIES	56	ENSGT01060000248591.a.a.b.a.b.c	ENSGT00640000091541.z.b	ENSGT00940000157351.d	ENSGT00940000159603.b.d	ENSGT00550000075186.d.b	ENSGT00390000018868.B.b.b	ENSGT00390000006233.c.b.z.c	ENSGT00940000161425.j	ENSGT00390000002761.c.a	ENSGT00990000210450.A	ENSGT00940000154838.A.f.b.a.g.b	ENSGT00940000157396.ic.a	ENSGT00390000008798.d.a.f	ENSGT01000000220975	ENSGT00390000013474.b.a.e.b #23	ENSGT00940000161498.f #22	ENSGT00440000039055.gb.b	ENSGT00550000074820.c	ENSGT00940000159874.g	ENSGT00940000159730.i	ENSGT00940000165589.b.b	ENSGT00940000158572.k.b	ENSGT00940000156782.d.a.a.a	ENSGT00940000159647.b	ENSGT00390000003628.a.a.a	ENSGT01030000234667.a.a.a.a.b.f	ENSGT00940000160142.a	ENSGT00940000159655.l	ENSGT00950000182969.B.c.a.b.b
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000048702	ENSSSAG00000048679	ENSSSAG00000046140	ENSSSAG00000046808	dysi1 (ENSSSAG00000046792)	ENSSSAG00000046778	GDIR (ENSSSAG00000046770)	ENSSSAG00000046720	ENSSSAG00000046602	ENSSSAG00000046537	ENSSSAG00000046527	PG12B (ENSSSAG00000046515)	ENSSSAG00000046490	ENSSSAG00000047305 #23	ENSSSAG00000046453	ENSSSAG00000092873 #22	ccd49 (ENSSSAG00000046421)	psmb3 (ENSSSAG00000046306)	ENSSSAG00000045917	ENSSSAG00000118984	ENSSSAG00000096550	ENSSSAG00000045865	ENSSSAG00000045584	SMARCE1 (ENSSSAG00000045542)	ENSSSAG00000045526	TNS4 (ENSSSAG00000045519)	ENSSSAG00000108632	ENSSSAG00000101879	ENSSSAG00000045481	krt15 (ENSSSAG00000045452)	krt15 (ENSSSAG00000051714)
River trout	MODERN SPECIES	5	RPTOR (ENSSTUG00000043832)	ENSSTUG00000044200	p4hb (ENSSTUG00000044225)	ppp1r27b (ENSSTUG00000044326)	anapc11 (ENSSTUG00000044334)	ENSSTUG00000044344	ARHGDIA (ENSSTUG00000044358)	ppp1r12c (ENSSTUG00000044374)	QPRT (ENSSTUG00000044444)	ENSSTUG00000044449	ENSSTUG00000044462	ENSSTUG00000001802	PLA2G12B (ENSSTUG00000002039)	ENSSTUG00000002231	scrn2 (ENSSTUG00000002412) #23	sp6 (ENSSTUG00000002422) #22	cwc25 (ENSSTUG00000002431)	psmb3 (ENSSTUG00000002443)	PIP4K2B (ENSSTUG00000002518)	ENSSTUG00000002602	ENSSTUG00000002662	MLLT6 (ENSSTUG00000002675)	ENSSTUG00000002701	ENSSTUG00000002919	IGFBP4 (ENSSTUG00000002936)	SMARCE1 (ENSSTUG00000002959)	ccr7 (ENSSTUG00000002982)	TNS4 (ENSSTUG00000003018)	ENSSTUG00000003040	ENSSTUG00000003064	krt15 (ENSSTUG00000003098)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	688	ENSHHUG00000034031	p4hb (ENSHHUG00000033615)	ppp1r27b (ENSHHUG00000033601)	anapc11 (ENSHHUG00000033594)	ENSHHUG00000033584	ARHGDIA (ENSHHUG00000033568)	ppp1r12c (ENSHHUG00000033495)	QPRT (ENSHHUG00000033489)	ENSHHUG00000033480	ENSHHUG00000033455	ENSHHUG00000033437	PLA2G12B (ENSHHUG00000033433)	ENSHHUG00000033429	scrn2 (ENSHHUG00000033424) #23	ENSHHUG00000033422	sp6 (ENSHHUG00000033421) #22	cwc25 (ENSHHUG00000033411)	psmb3 (ENSHHUG00000033328)	ENSHHUG00000033227	ENSHHUG00000033220	ENSHHUG00000033214	ENSHHUG00000033209	ENSHHUG00000033193	ENSHHUG00000033140	ENSHHUG00000033134	IGFBP4 (ENSHHUG00000033132)	SMARCE1 (ENSHHUG00000033128)	ccr7 (ENSHHUG00000033120)	TNS4 (ENSHHUG00000033107)	ENSHHUG00000033104	ENSHHUG00000033100
Huchen	MODERN SPECIES	237											ENSHHUG00000035611	ENSHHUG00000035639	PLA2G12B (ENSHHUG00000035641)	scrn2 (ENSHHUG00000035644) #23	ENSHHUG00000035652	sp6 (ENSHHUG00000035670) #22	cwc25 (ENSHHUG00000035673)	psmb3 (ENSHHUG00000035683)	PIP4K2B (ENSHHUG00000035727)	ENSHHUG00000035754	ENSHHUG00000035773	ENSHHUG00000035778	ENSHHUG00000035783	ENSHHUG00000035795	ENSHHUG00000036196	IGFBP4 (ENSHHUG00000036214)	SMARCE1 (ENSHHUG00000036237)	ccr7 (ENSHHUG00000036251)	TNS4 (ENSHHUG00000036258)	ENSHHUG00000036270	ENSHHUG00000036334
Northern pike	MODERN SPECIES	8	NPTX1 (ENSELUG00000008506)	RPTOR (ENSELUG00000008551)	ENSELUG00000029972	ENSELUG00000008695	p4hb (ENSELUG00000008781)	ppp1r27b (ENSELUG00000008802)	anapc11 (ENSELUG00000008815)	ENSELUG00000008849	ARHGDIA (ENSELUG00000008875)	ppp1r12c (ENSELUG00000008946)	QPRT (ENSELUG00000008969)	ENSELUG00000009031	PLA2G12B (ENSELUG00000009070)	ENSELUG00000024697	scrn2 (ENSELUG00000009096) #23	sp6 (ENSELUG00000009117) #22	cwc25 (ENSELUG00000009127)	psmb3 (ENSELUG00000009149)	PIP4K2B (ENSELUG00000009223)	PCGF2 (ENSELUG00000009280)	ENSELUG00000009303	ENSELUG00000009315	ENSELUG00000009328	ENSELUG00000009377	ENSELUG00000009416	SMARCE1 (ENSELUG00000009457)	ccr7 (ENSELUG00000009468)	TNS4 (ENSELUG00000009488)	KRT222 (ENSELUG00000009512)	krt96 (ENSELUG00000001476)	krt94 (ENSELUG00000009692)
Acanthomorphata	ANCESTRAL SPECIES	62	ENSGT00940000176115	ENSGT00390000011880	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000176115	ENSGT00390000011880	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00940000176115	ENSGT00390000011880	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000176115	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Atherinomorphae	ANCESTRAL SPECIES	53															ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00390000008798.d.a	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Aplocheiloidei	ANCESTRAL SPECIES	99										ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b
Turquoise killifish	MODERN SPECIES	48										QPRT (ENSNFUG00015017241)	PPP1R12C (ENSNFUG00015017209)	ENSNFUG00015017203	ARHGDIA (ENSNFUG00015017196)	ENSNFUG00015017193	scrn2 (ENSNFUG00015017187) #23	sp6 (ENSNFUG00015017182) #22	CWC25 (ENSNFUG00015017175)	PSMB3 (ENSNFUG00015017164)	PIP4K2B (ENSNFUG00015016209)	PCGF2 (ENSNFUG00015016145)	ENSNFUG00015016075	CCRN4L (ENSNFUG00015016059)	ELF2 (ENSNFUG00015016046)	Nfu_g_1_018478 (ENSNFUG00015016040)
Mangrove rivulus	MODERN SPECIES	532												ENSKMAG00000015565	uqcc1 (ENSKMAG00000015522)	fam83c (ENSKMAG00000015504)	scrn2 (ENSKMAG00000015467) #23	sp6 (ENSKMAG00000015443) #22	cwc25 (ENSKMAG00000015418)	psmb3 (ENSKMAG00000015390)	PIP4K2B (ENSKMAG00000015354)	ENSKMAG00000015314	ENSKMAG00000015295	ENSKMAG00000015245	ENSKMAG00000015216	IGFBP4 (ENSKMAG00000015189)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000008798.d.a	ENSGT00550000075186	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000008798.d.a	ENSGT00550000075186	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000008798.d.a	ENSGT00550000075186	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000008798.d.a	ENSGT00550000075186	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a.h	ENSGT00940000165589.a.g	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b
Amazon molly	MODERN SPECIES	263	SEC14L1 (ENSPFOG00000016508)	ENDOV (ENSPFOG00000016616)	NPTX1 (ENSPFOG00000016641)	RPTOR (ENSPFOG00000016673)	ENSPFOG00000016892	p4hb (ENSPFOG00000016930)	ppp1r27b (ENSPFOG00000016955)	PLA2G12B (ENSPFOG00000016957)	anapc11 (ENSPFOG00000016972)	ENSPFOG00000016975	QPRT (ENSPFOG00000017019)	ppp1r12c (ENSPFOG00000017031)	ARHGDIA (ENSPFOG00000017079)	ENSPFOG00000017094	scrn2 (ENSPFOG00000017119) #23	sp6 (ENSPFOG00000020694) #22	cwc25 (ENSPFOG00000017152)	psmb3 (ENSPFOG00000017177)	PIP4K2B (ENSPFOG00000017188)	PCGF2 (ENSPFOG00000017202)	ENSPFOG00000017229	ENSPFOG00000017231	ENSPFOG00000017235
Sailfin molly	MODERN SPECIES	477																sp6 (ENSPLAG00000004527) #22	cwc25 (ENSPLAG00000004535)	psmb3 (ENSPLAG00000004550)	ENSPLAG00000004577	PCGF2 (ENSPLAG00000004584)	ENSPLAG00000004592	ENSPLAG00000004599	ENSPLAG00000004615	ENSPLAG00000004644	IGFBP4 (ENSPLAG00000004670)	SMARCE1 (ENSPLAG00000004694)	ccr7 (ENSPLAG00000004701)	TNS4 (ENSPLAG00000004726)	KRT222 (ENSPLAG00000004746)	krt97 (ENSPLAG00000004767)	ENSPLAG00000004780
Platyfish	MODERN SPECIES	19	ENDOV (ENSXMAG00000017948)	NPTX1 (ENSXMAG00000017951)	RPTOR (ENSXMAG00000017957)	ENSXMAG00000017986	p4hb (ENSXMAG00000021847)	ppp1r27b (ENSXMAG00000028146)	ENSXMAG00000023057	PLA2G12B (ENSXMAG00000018014)	anapc11 (ENSXMAG00000018021)	ENSXMAG00000018022	QPRT (ENSXMAG00000018052)	ppp1r12c (ENSXMAG00000018058)	ARHGDIA (ENSXMAG00000018079)	ENSXMAG00000018086	scrn2 (ENSXMAG00000018095) #23	sp6 (ENSXMAG00000018112) #22	cwc25 (ENSXMAG00000018113)	psmb3 (ENSXMAG00000018120)	PIP4K2B (ENSXMAG00000018124)	ENSXMAG00000018149	ENSXMAG00000018154	ENSXMAG00000018157	ENSXMAG00000018158	ENSXMAG00000018173	IGFBP4 (ENSXMAG00000018176)	SMARCE1 (ENSXMAG00000018179)	ccr7 (ENSXMAG00000018191)	TNS4 (ENSXMAG00000023115)	KRT222 (ENSXMAG00000018192)	krt97 (ENSXMAG00000018197)	RIMS1 (ENSXMAG00000018211)
NAME_4	ANCESTRAL SPECIES	44	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00940000157396.g	ENSGT00390000008798.d.a	ENSGT00550000075186	ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00390000004574	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000163886.A	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b
Mummichog	MODERN SPECIES	253									ENSFHEG00000023238	QPRT (ENSFHEG00000023244)	ppp1r12c (ENSFHEG00000004660)	ARHGDIA (ENSFHEG00000004688)	ENSFHEG00000004698	ENSFHEG00000004708	scrn2 (ENSFHEG00000000127) #23	sp6 (ENSFHEG00000004748) #22	cwc25 (ENSFHEG00000004754)	psmb3 (ENSFHEG00000004761)	PCGF2 (ENSFHEG00000004771)	ENSFHEG00000004779	MLLT6 (ENSFHEG00000004793)	ENSFHEG00000004944	IGFBP4 (ENSFHEG00000004962)	ENSFHEG00000004997	ccr7 (ENSFHEG00000005005)	ENSFHEG00000005008	KRT222 (ENSFHEG00000005026)	krt97 (ENSFHEG00000005039)	RIMS1 (ENSFHEG00000005189)	ENSFHEG00000005302	EEF1A1 (ENSFHEG00000005331)
Sheepshead minnow	MODERN SPECIES	238	ENDOV (ENSCVAG00000007166)	NPTX1 (ENSCVAG00000007192)	RPTOR (ENSCVAG00000007480)	ENSCVAG00000007511	p4hb (ENSCVAG00000007547)	ppp1r27b (ENSCVAG00000007551)	ENSCVAG00000007566	PLA2G12B (ENSCVAG00000007581)	anapc11 (ENSCVAG00000007590)	ENSCVAG00000007645	QPRT (ENSCVAG00000007650)	ppp1r12c (ENSCVAG00000007730)	ARHGDIA (ENSCVAG00000007775)	ENSCVAG00000007789	scrn2 (ENSCVAG00000007800) #23	sp6 (ENSCVAG00000007820) #22	cwc25 (ENSCVAG00000007828)	psmb3 (ENSCVAG00000007852)	PIP4K2B (ENSCVAG00000000973)	ENSCVAG00000007899	ENSCVAG00000007905	ENSCVAG00000007915	ENSCVAG00000007935	ENSCVAG00000000215	IGFBP4 (ENSCVAG00000007964)	SMARCE1 (ENSCVAG00000000216)	ccr7 (ENSCVAG00000008008)	ENSCVAG00000008020	KRT222 (ENSCVAG00000008031)	ENSCVAG00000008051	RIMS1 (ENSCVAG00000008117)
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000165311.b	ENSGT00940000162755	ENSGT00500000045018	ENSGT00940000154987.i.b.a.b	ENSGT00940000155337.`b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00940000153464.B.z.a	ENSGT00530000063410.a.q.b	ENSGT00940000167432	ENSGT01100000263601	ENSGT00940000155345.r	ENSGT00390000012029	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000165311.b	ENSGT00940000162755	ENSGT00500000045018	ENSGT00940000154987.i.b.a.b	ENSGT00940000155337.`b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00940000153464.B.z.a	ENSGT00530000063410.a.q.b	ENSGT00940000167432	ENSGT01100000263601	ENSGT00940000155345.r	ENSGT00390000012029	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Indian medaka	MODERN SPECIES	21	ENSOMEG00000000896	ENSOMEG00000018822	tpcn3 (ENSOMEG00000000912)	pgap4 (ENSOMEG00000018912)	ENSOMEG00000018924	lgalsla (ENSOMEG00000018952)	slc29a2 (ENSOMEG00000018982)	ENSOMEG00000019011	vps54 (ENSOMEG00000019074)	ugp2a (ENSOMEG00000019140)	mdh1aa (ENSOMEG00000019208)	otx2a (ENSOMEG00000019232)	ENSOMEG00000019249	b3gnt2a (ENSOMEG00000000505)	commd1 (ENSOMEG00000019278)	ENSOMEG00000019292 #22	scrn2 (ENSOMEG00000000510) #23	cwc25 (ENSOMEG00000019365)	psmb3 (ENSOMEG00000019384)	PIP4K2B (ENSOMEG00000019420)	PCGF2 (ENSOMEG00000019443)	ENSOMEG00000019451	ENSOMEG00000000515	ENSOMEG00000019506	ENSOMEG00000019537	IGFBP4 (ENSOMEG00000019551)	SMARCE1 (ENSOMEG00000019569)	ccr7 (ENSOMEG00000019575)	TNS4 (ENSOMEG00000019600)	KRT222 (ENSOMEG00000000519)	krt97 (ENSOMEG00000019636)
Javanese ricefish	MODERN SPECIES		ENSOJAG00000008822	tpcn3 (ENSOJAG00000008877)	pgap4 (ENSOJAG00000008998)	lgalsla (ENSOJAG00000009011)	ENSOJAG00000009034	slc29a2 (ENSOJAG00000009047)	ENSOJAG00000009060	vps54 (ENSOJAG00000009180)	ugp2a (ENSOJAG00000010120)	mdh1aa (ENSOJAG00000010826)	otx2a (ENSOJAG00000011100)	ENSOJAG00000011113	b3gnt2a (ENSOJAG00000011165)	commd1 (ENSOJAG00000011177)	scrn2 (ENSOJAG00000011207) #23	ENSOJAG00000011320 #22	cwc25 (ENSOJAG00000011346)	psmb3 (ENSOJAG00000011353)	PIP4K2B (ENSOJAG00000011506)	PCGF2 (ENSOJAG00000012224)	ENSOJAG00000012244	ENSOJAG00000012254	ENSOJAG00000012261	ENSOJAG00000012281	IGFBP4 (ENSOJAG00000012291)	ENSOJAG00000012357	ccr7 (ENSOJAG00000012426)	ENSOJAG00000012502	krt97 (ENSOJAG00000012518)	RIMS1 (ENSOJAG00000012649)	ENSOJAG00000013760
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00940000165311.b	ENSGT00940000162755	ENSGT00500000045018	ENSGT00940000154987.i.b.a.b	ENSGT00940000155337.`b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00390000000583	ENSGT00940000153464.B.z.a	ENSGT00530000063410.a.q.b	ENSGT00940000167432	ENSGT01100000263601	ENSGT00940000155345.r	ENSGT00390000012029	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00990000204927	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Japanese Medaka HdrR	MODERN SPECIES		pgap4 (ENSORLG00000003053)	ENSORLG00000003048	lgalsla (ENSORLG00000003039)	ENSORLG00000003028	ENSORLG00000002992	vps54 (ENSORLG00000002974)	ugp2a (ENSORLG00000002940)	mdh1 (ENSORLG00000002906)	ENSORLG00000027545	otx2a (ENSORLG00000030023)	ENSORLG00000022190	ENSORLG00000002846	b3gnt2a (ENSORLG00000002840)	commd1 (ENSORLG00000022331)	scrn2 (ENSORLG00000002816) #23	sp6 (ENSORLG00000018574) #22	cwc25 (ENSORLG00000018569)	psmb3 (ENSORLG00000019520)	PIP4K2B (ENSORLG00000022409)	ENSORLG00000025709	ENSORLG00000029268	ENSORLG00000027866	ENSORLG00000002702	ENSORLG00000002674	IGFBP4 (ENSORLG00000002661)	SMARCE1 (ENSORLG00000002654)	ccr7 (ENSORLG00000002623)	TNS4 (ENSORLG00000030337)	ENSORLG00000002603	krt97 (ENSORLG00000002594)	ENSORLG00000025457
Chinese medaka	MODERN SPECIES	355				ENSOSIG00000023317	tpcn3 (ENSOSIG00000023331)	pgap4 (ENSOSIG00000023339)	MAL (ENSOSIG00000023343)	lgalsla (ENSOSIG00000023345)	ugp2a (ENSOSIG00000023369)	mdh1aa (ENSOSIG00000023428)	otx2a (ENSOSIG00000023450)	ENSOSIG00000023452	b3gnt2a (ENSOSIG00000023455)	commd1 (ENSOSIG00000023456)	scrn2 (ENSOSIG00000023457) #23	sp6 (ENSOSIG00000023459) #22	cwc25 (ENSOSIG00000023460)	psmb3 (ENSOSIG00000023461)	PIP4K2B (ENSOSIG00000023492)	PCGF2 (ENSOSIG00000023528)	ENSOSIG00000023529	ENSOSIG00000023530	ENSOSIG00000023531	ENSOSIG00000023532	IGFBP4 (ENSOSIG00000023539)	SMARCE1 (ENSOSIG00000023548)	ccr7 (ENSOSIG00000023553)	TNS4 (ENSOSIG00000023557)	ENSOSIG00000023559	krt97 (ENSOSIG00000023561)	RIMS1 (ENSOSIG00000023578)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Pomacentridae	ANCESTRAL SPECIES	85	ENSGT00390000011880.b	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a.e	ENSGT00940000164979.f.b	ENSGT00940000164979.f.a.f	ENSGT00940000158604	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Amphiprion	ANCESTRAL SPECIES		ENSGT00390000011880.b	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a.e	ENSGT00940000164979.f.a.f	ENSGT00940000158604	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000163886.A	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Orange clownfish	MODERN SPECIES	17	NPTX1 (ENSAPEG00000013867)	ENSAPEG00000013817	ENSAPEG00000013796	SEC14L1 (ENSAPEG00000013704)	ENSAPEG00000013625	trim25 (ENSAPEG00000013603)	ENSAPEG00000013598	dgke (ENSAPEG00000013543)	ENSAPEG00000013527	ARHGDIA (ENSAPEG00000013514)	ppp1r12c (ENSAPEG00000013455)	QPRT (ENSAPEG00000013390)	ENSAPEG00000013303	ENSAPEG00000013286	PLA2G12B (ENSAPEG00000013258)	sp6 (ENSAPEG00000013252) #22	scrn2 (ENSAPEG00000013195) #23	cwc25 (ENSAPEG00000013237)	psmb3 (ENSAPEG00000013173)	PCGF2 (ENSAPEG00000013163)	PIP4K2B (ENSAPEG00000013098)	ENSAPEG00000013077	ENSAPEG00000013073	ENSAPEG00000013045	IGFBP4 (ENSAPEG00000013038)	ENSAPEG00000013014	ENSAPEG00000012911	ccr7 (ENSAPEG00000012901)	ENSAPEG00000012886	ENSAPEG00000012880	krt97 (ENSAPEG00000012866)
Clown anemonefish	MODERN SPECIES	1459	ENSAOCG00000001355	ELMOD3 (ENSAOCG00000018962)	star (ENSAOCG00000019006)	ENSAOCG00000019089	ENSAOCG00000019204	trim25 (ENSAOCG00000019228)	ENSAOCG00000019244	dgke (ENSAOCG00000019289)	ENSAOCG00000019305	ARHGDIA (ENSAOCG00000001401)	ppp1r12c (ENSAOCG00000019396)	QPRT (ENSAOCG00000019407)	ENSAOCG00000019520	ENSAOCG00000019547	PLA2G12B (ENSAOCG00000019569)	sp6 (ENSAOCG00000019578) #22	ENSAOCG00000019588	ENSAOCG00000019605	scrn2 (ENSAOCG00000019626) #23	psmb3 (ENSAOCG00000019661)	PIP4K2B (ENSAOCG00000019691)	PCGF2 (ENSAOCG00000019708)	ENSAOCG00000019713	ENSAOCG00000019723	ENSAOCG00000019750	SV2A (ENSAOCG00000002686)	sf3b4 (ENSAOCG00000019801)	LIX1L (ENSAOCG00000001459)	ENSAOCG00000019820	pabpc1b (ENSAOCG00000019839)	ENSAOCG00000019854
Spiny chromis	MODERN SPECIES	156									ARHGDIA (ENSAPOG00000000689)	ppp1r12c (ENSAPOG00000001573)	QPRT (ENSAPOG00000001558)	ENSAPOG00000000734	ENSAPOG00000001518	PLA2G12B (ENSAPOG00000001509)	scrn2 (ENSAPOG00000001499) #23	sp6 (ENSAPOG00000001496) #22	ENSAPOG00000001491	psmb3 (ENSAPOG00000001487)	PIP4K2B (ENSAPOG00000001480)	PCGF2 (ENSAPOG00000001472)	ENSAPOG00000001464	ENSAPOG00000001460	ENSAPOG00000001457	ENSAPOG00000001448	IGFBP4 (ENSAPOG00000001441)	SMARCE1 (ENSAPOG00000001434)	ccr7 (ENSAPOG00000001424)	TNS4 (ENSAPOG00000001417)	ENSAPOG00000001409	krt97 (ENSAPOG00000001393)	RIMS1 (ENSAPOG00000001369)
Bicolor damselfish	MODERN SPECIES	1184	ENSSPAG00000016831	galnt7 (ENSSPAG00000016871)	SARAF (ENSSPAG00000016911)	zgc:153146 (ENSSPAG00000016928)	slc43a3a (ENSSPAG00000016959)	ENSSPAG00000017015	ENSSPAG00000017019	ENSSPAG00000017028	ARHGDIA (ENSSPAG00000017055)	ppp1r12c (ENSSPAG00000017097)	QPRT (ENSSPAG00000017153)	ENSSPAG00000017164	ENSSPAG00000017205	PLA2G12B (ENSSPAG00000017226)	scrn2 (ENSSPAG00000017248) #23	sp6 (ENSSPAG00000017277) #22	ENSSPAG00000017291	psmb3 (ENSSPAG00000017299)	PIP4K2B (ENSSPAG00000017327)
Cichlidae	ANCESTRAL SPECIES	32	ENSGT00550000075186	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00550000075186	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a.j	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00550000075186	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a.j	ENSGT00940000154761.yb.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00550000075186	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a.i.a	ENSGT00940000154761.yb.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00550000075186	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a.i.a	ENSGT00940000154761.yb.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a.i.a	ENSGT00940000154838.A.f.b.a.i.b	ENSGT00940000154761.yb.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Zebra mbuna	MODERN SPECIES	1109	ENDOV (ENSMZEG00005011897)	NPTX1 (ENSMZEG00005011906)	RPTOR (ENSMZEG00005011947)	ENSMZEG00005012050	p4hb (ENSMZEG00005012069)	ppp1r27b (ENSMZEG00005012088)	ENSMZEG00005012096	ARHGDIA (ENSMZEG00005012104)	ppp1r12c (ENSMZEG00005012130)	QPRT (ENSMZEG00005012143)	ENSMZEG00005012162	ENSMZEG00005012209	DNAH6 (ENSMZEG00005012256)	PLA2G12B (ENSMZEG00005012357)	scrn2 (ENSMZEG00005012384) #23	sp6 (ENSMZEG00005012407) #22	cwc25 (ENSMZEG00005012421)	psmb3 (ENSMZEG00005012437)	PIP4K2B (ENSMZEG00005012456)	ENSMZEG00005012474	ENSMZEG00005012482	ENSMZEG00005012487	ENSMZEG00005012493	ENSMZEG00005012520	IGFBP4 (ENSMZEG00005012532)	ENSMZEG00005012542	ccr7 (ENSMZEG00005012551)	ENSMZEG00005012559	KRT222 (ENSMZEG00005012564)	krt97 (ENSMZEG00005012578)	RIMS1 (ENSMZEG00005012628)
Eastern happy	MODERN SPECIES	18	NPTX1 (ENSACLG00000010331)	RPTOR (ENSACLG00000010253)	ENSACLG00000010219	p4hb (ENSACLG00000010198)	ppp1r27b (ENSACLG00000010191)	ENSACLG00000010184	ARHGDIA (ENSACLG00000010157)	ppp1r12c (ENSACLG00000010109)	QPRT (ENSACLG00000010103)	ENSACLG00000010067	ENSACLG00000010035	DNAH6 (ENSACLG00000009935)	ENSACLG00000009924	PLA2G12B (ENSACLG00000009918)	scrn2 (ENSACLG00000009357) #23	sp6 (ENSACLG00000009353) #22	cwc25 (ENSACLG00000009352)	psmb3 (ENSACLG00000009343)	PIP4K2B (ENSACLG00000009331)	PCGF2 (ENSACLG00000009320)	ENSACLG00000009316	ENSACLG00000009310	ENSACLG00000009306	MLLT6 (ENSACLG00000009259)	ENSACLG00000009242	IGFBP4 (ENSACLG00000009214)	SMARCE1 (ENSACLG00000009146)	ccr7 (ENSACLG00000009137)	TNS4 (ENSACLG00000009099)	krt97 (ENSACLG00000009073)	KRT222 (ENSACLG00000009030)
P. nyererei	MODERN SPECIES	466													DNAH6 (ENSPNYG00000006265)	PLA2G12B (ENSPNYG00000006210)	scrn2 (ENSPNYG00000006183) #23	sp6 (ENSPNYG00000006168) #22	ENSPNYG00000006153	psmb3 (ENSPNYG00000006129)	PIP4K2B (ENSPNYG00000006093)	PCGF2 (ENSPNYG00000006066)	ENSPNYG00000006048	ENSPNYG00000006003	ENSPNYG00000005951	IGFBP4 (ENSPNYG00000005940)	SMARCE1 (ENSPNYG00000005893)	ccr7 (ENSPNYG00000005879)	TNS4 (ENSPNYG00000005850)	KRT222 (ENSPNYG00000005823)	krt97 (ENSPNYG00000005805)	RIMS1 (ENSPNYG00000005657)	ENSPNYG00000005614
Burton s mouthbrooder	MODERN SPECIES	297	NPTX1 (ENSHBUG00000001536)	RPTOR (ENSHBUG00000001516)	ENSHBUG00000001480	p4hb (ENSHBUG00000001460)	ppp1r27b (ENSHBUG00000001457)	ENSHBUG00000001454	ARHGDIA (ENSHBUG00000001450)	ppp1r12c (ENSHBUG00000001445)	QPRT (ENSHBUG00000001434)	ENSHBUG00000001430	DNAH6 (ENSHBUG00000001420)	ENSHBUG00000001410	ENSHBUG00000001404	PLA2G12B (ENSHBUG00000001401)	scrn2 (ENSHBUG00000001400) #23	sp6 (ENSHBUG00000001395) #22	cwc25 (ENSHBUG00000001392)	psmb3 (ENSHBUG00000001388)	PIP4K2B (ENSHBUG00000001386)	ENSHBUG00000001381	ENSHBUG00000001378	ENSHBUG00000001376	MLLT6 (ENSHBUG00000001374)	ENSHBUG00000001369	IGFBP4 (ENSHBUG00000001367)	ENSHBUG00000001362	ccr7 (ENSHBUG00000001358)	ENSHBUG00000001355	KRT222 (ENSHBUG00000001354)	krt97 (ENSHBUG00000001352)	RIMS1 (ENSHBUG00000001343)
Lyretail cichlid	MODERN SPECIES	355	ENSNBRG00000017694	ENSNBRG00000017687	NPTX1 (ENSNBRG00000017670)	RPTOR (ENSNBRG00000017604)	ENSNBRG00000017581	p4hb (ENSNBRG00000017507)	ppp1r27b (ENSNBRG00000017478)	ENSNBRG00000017460	arhgdia (ENSNBRG00000017445)	ENSNBRG00000017404	QPRT (ENSNBRG00000017394)	ENSNBRG00000017326	DNAH6 (ENSNBRG00000017181)	PLA2G12B (ENSNBRG00000017140)	scrn2 (ENSNBRG00000017121) #23	sp6 (ENSNBRG00000017116) #22	ENSNBRG00000017108	psmb3 (ENSNBRG00000017100)	PIP4K2B (ENSNBRG00000017074)	PCGF2 (ENSNBRG00000017053)	MLLT6 (ENSNBRG00000017019)	ENSNBRG00000016974	IGFBP4 (ENSNBRG00000016951)	ENSNBRG00000016940	ENSNBRG00000016920	ccr7 (ENSNBRG00000016910)	KRT222 (ENSNBRG00000016891)	krt97 (ENSNBRG00000016868)	ENSNBRG00000016853	ENSNBRG00000016819	ENSNBRG00000016788
Nile tilapia	MODERN SPECIES	18	ENDOV (ENSONIG00000003328)	NPTX1 (ENSONIG00000003326)	RPTOR (ENSONIG00000003320)	ENSONIG00000003318	p4hb (ENSONIG00000003312)	ENSONIG00000003298	ENSONIG00000003296	ARHGDIA (ENSONIG00000029138)	ppp1r12c (ENSONIG00000003286)	QPRT (ENSONIG00000003285)	ENSONIG00000003258	ENSONIG00000027407	ENSONIG00000022381	PLA2G12B (ENSONIG00000003257)	scrn2 (ENSONIG00000003254) #23	ENSONIG00000030944 #22	cwc25 (ENSONIG00000003251)	psmb3 (ENSONIG00000003248)	PIP4K2B (ENSONIG00000003243)	pcgf2 (ENSONIG00000038864)	ENSONIG00000040594	ENSONIG00000021334	ENSONIG00000033771	ENSONIG00000030601	ENSONIG00000037854	ENSONIG00000040034	ENSONIG00000030994	ENSONIG00000004189	ENSONIG00000004185	ENSONIG00000041833	ENSONIG00000029917
Midas cichlid	MODERN SPECIES	99														PLA2G12B (ENSACIG00000024154)	scrn2 (ENSACIG00000024152) #23	sp6 (ENSACIG00000024151) #22	ENSACIG00000024149	psmb3 (ENSACIG00000024147)	PIP4K2B (ENSACIG00000024145)	PCGF2 (ENSACIG00000024144)	ENSACIG00000024142	ENSACIG00000024141	ENSACIG00000024139	ENSACIG00000024138	IGFBP4 (ENSACIG00000024136)	ENSACIG00000024134	SMARCE1 (ENSACIG00000024132)	ccr7 (ENSACIG00000024130)	TNS4 (ENSACIG00000024129)	KRT222 (ENSACIG00000024127)	krt97 (ENSACIG00000024122)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Ballan wrasse	MODERN SPECIES	433												QPRT (ENSLBEG00000016209)	ENSLBEG00000016319	PLA2G12B (ENSLBEG00000016526)	scrn2 (ENSLBEG00000016542) #23	sp6 (ENSLBEG00000016575) #22	ENSLBEG00000016596	psmb3 (ENSLBEG00000016607)	PIP4K2B (ENSLBEG00000016634)	PCGF2 (ENSLBEG00000016694)	ENSLBEG00000016710	ENSLBEG00000016724	ENSLBEG00000016746	ENSLBEG00000016783	IGFBP4 (ENSLBEG00000016814)	ENSLBEG00000016880	ENSLBEG00000016913	ENSLBEG00000016975	krt97 (ENSLBEG00000016985)	RIMS1 (ENSLBEG00000017095)	ENSLBEG00000017226
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Gilthead seabream	MODERN SPECIES		NPTX1 (ENSSAUG00010000538)	RPTOR (ENSSAUG00010000603)	ENSSAUG00010001113	p4hb (ENSSAUG00010001143)	ppp1r27b (ENSSAUG00010001167)	anapc11 (ENSSAUG00010001169)	ENSSAUG00010001172	ARHGDIA (ENSSAUG00010001177)	ppp1r12c (ENSSAUG00010001182)	QPRT (ENSSAUG00010001186)	ENSSAUG00010001191	ENSSAUG00010001222	PLA2G12B (ENSSAUG00010001236)	ENSSAUG00010001239	scrn2 (ENSSAUG00010001246) #23	sp6 (ENSSAUG00010001249) #22	cwc25 (ENSSAUG00010001252)	psmb3 (ENSSAUG00010001256)	PIP4K2B (ENSSAUG00010001269)	PCGF2 (ENSSAUG00010001448)	ENSSAUG00010001451	ENSSAUG00010001460	ENSSAUG00010001464	IGFBP4 (ENSSAUG00010001470)	SMARCE1 (ENSSAUG00010001477)	ccr7 (ENSSAUG00010001767)	TNS4 (ENSSAUG00010001774)	KRT222 (ENSSAUG00010001784)	krt97 (ENSSAUG00010001794)	RIMS1 (ENSSAUG00010001933)	ENSSAUG00010005554
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000163886.A	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b
European seabass	MODERN SPECIES	20	ENSDLAG00005012106	ENSDLAG00005012070	ENSDLAG00005012002	ENSDLAG00005033647	ENSDLAG00005032887	ENSDLAG00005030671	ENSDLAG00005033035	ENSDLAG00005031292	ENSDLAG00005011946	ENSDLAG00005011857	ENSDLAG00005026883	ENSDLAG00005011754	ENSDLAG00005027503	ENSDLAG00005011745	ENSDLAG00005011733 #23	ENSDLAG00005028937 #22	ENSDLAG00005011712	ENSDLAG00005011694	ENSDLAG00005011020	ENSDLAG00005027787	ENSDLAG00005010978	ENSDLAG00005028105	ENSDLAG00005031104	ENSDLAG00005027046	ENSDLAG00005034319	ENSDLAG00005020540	ENSDLAG00005020535	ENSDLAG00005030630	ENSDLAG00005020105	ENSDLAG00005019909	ENSDLAG00005030833
Large yellow croaker	MODERN SPECIES		pcdh10b (ENSLCRG00005000069)	ENSLCRG00005000075	ENSLCRG00005000077	pcdh18b (ENSLCRG00005000102)	ENSLCRG00005000108	ENSLCRG00005000124	ARHGDIA (ENSLCRG00005000135)	ppp1r12c (ENSLCRG00005000143)	QPRT (ENSLCRG00005000156)	ENSLCRG00005000221	ENSLCRG00005000330	ENSLCRG00005000340	PLA2G12B (ENSLCRG00005000349)	scrn2 (ENSLCRG00005000352) #23	ENSLCRG00005000355	sp6 (ENSLCRG00005000359) #22	cwc25 (ENSLCRG00005000362)	psmb3 (ENSLCRG00005000367)	PIP4K2B (ENSLCRG00005000406)	PCGF2 (ENSLCRG00005000539)	ENSLCRG00005000548	ENSLCRG00005000550	ENSLCRG00005000552	ENSLCRG00005000558	IGFBP4 (ENSLCRG00005000562)	ENSLCRG00005000567	ccr7 (ENSLCRG00005000569)	ENSLCRG00005000570	KRT222 (ENSLCRG00005000572)	krt97 (ENSLCRG00005000574)	RIMS1 (ENSLCRG00005000583)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Lumpfish	MODERN SPECIES		ENDOV (ENSCLMG00005004148)	NPTX1 (ENSCLMG00005004150)	RPTOR (ENSCLMG00005004157)	ENSCLMG00005004217	p4hb (ENSCLMG00005004223)	ppp1r27b (ENSCLMG00005004990)	anapc11 (ENSCLMG00005004991)	ALYREF (ENSCLMG00005004995)	ARHGDIA (ENSCLMG00005004998)	ppp1r12c (ENSCLMG00005005002)	QPRT (ENSCLMG00005005009)	ENSCLMG00005005020	ENSCLMG00005005252	PLA2G12B (ENSCLMG00005005254)	scrn2 (ENSCLMG00005005255) #23	sp6 (ENSCLMG00005005256) #22	cwc25 (ENSCLMG00005005259)	psmb3 (ENSCLMG00005005260)	PIP4K2B (ENSCLMG00005005265)	PCGF2 (ENSCLMG00005005370)	ENSCLMG00005005371	ENSCLMG00005005372	ENSCLMG00005005376	ENSCLMG00005005377	IGFBP4 (ENSCLMG00005005378)	SMARCE1 (ENSCLMG00005005381)	ccr7 (ENSCLMG00005005401)	TNS4 (ENSCLMG00005005404)	KRT222 (ENSCLMG00005005407)	krt97 (ENSCLMG00005005409)	RIMS1 (ENSCLMG00005005411)
Stickleback	MODERN SPECIES	4	RPTOR (ENSGACG00000018193)	ENSGACG00000018191	ENSGACG00000018190	p4hb (ENSGACG00000018185)	ppp1r27b (ENSGACG00000018184)	ENSGACG00000018183	ALYREF (ENSGACG00000018178)	ARHGDIA (ENSGACG00000018170)	ppp1r12c (ENSGACG00000018168)	QPRT (ENSGACG00000018165)	ENSGACG00000018163	PLA2G12B (ENSGACG00000018160)	ENSGACG00000018158	ENSGACG00000018157	scrn2 (ENSGACG00000018155) #23	sp6 (ENSGACG00000018154) #22	cwc25 (ENSGACG00000018153)	psmb3 (ENSGACG00000018151)	PIP4K2B (ENSGACG00000018135)	ENSGACG00000018128	ENSGACG00000018126	ENSGACG00000018124	ENSGACG00000018123	IGFBP4 (ENSGACG00000018120)	SMARCE1 (ENSGACG00000018114)	ccr7 (ENSGACG00000018112)	ENSGACG00000018111	KRT222 (ENSGACG00000018110)	ENSGACG00000018109	krt97 (ENSGACG00000018108)	RIMS1 (ENSGACG00000018104)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT01100000263476.B.b.a.b
Pike perch	MODERN SPECIES	63	ENSSLUG00000012682	p4hb (ENSSLUG00000012730)	ppp1r27b (ENSSLUG00000012828)	anapc11 (ENSSLUG00000012831)	ENSSLUG00000012838	ENSSLUG00000012843	ALYREF (ENSSLUG00000012854)	ARHGDIA (ENSSLUG00000012858)	arhgdia (ENSSLUG00000012864)	ppp1r12c (ENSSLUG00000012870)	QPRT (ENSSLUG00000012879)	ENSSLUG00000012895	ENSSLUG00000012928	PLA2G12B (ENSSLUG00000012938)	scrn2 (ENSSLUG00000012943) #23	sp6 (ENSSLUG00000012948) #22	cwc25 (ENSSLUG00000012953)	psmb3 (ENSSLUG00000012958)	PIP4K2B (ENSSLUG00000012990)	PCGF2 (ENSSLUG00000013383)	ENSSLUG00000013388	ENSSLUG00000013394	ENSSLUG00000013402	IGFBP4 (ENSSLUG00000013419)	ENSSLUG00000013444	ccr7 (ENSSLUG00000013687)	KRT222 (ENSSLUG00000013698)	krt97 (ENSSLUG00000013711)	RIMS1 (ENSSLUG00000013795)	ENSSLUG00000014045	ENSSLUG00000014320
Channel bull blenny	MODERN SPECIES		ENSCGOG00000007777	RPTOR (ENSCGOG00000007849)	NPTX1 (ENSCGOG00000009983)	ENDOV (ENSCGOG00000009985)	SEC14L1 (ENSCGOG00000010010)	ENSCGOG00000010968	ENSCGOG00000010983	ALYREF (ENSCGOG00000010984)	ARHGDIA (ENSCGOG00000010986)	ppp1r12c (ENSCGOG00000010989)	QPRT (ENSCGOG00000010990)	ENSCGOG00000010993	ENSCGOG00000011103	PLA2G12B (ENSCGOG00000011106)	scrn2 (ENSCGOG00000011115) #23	sp6 (ENSCGOG00000011120) #22	cwc25 (ENSCGOG00000011122)	PIP4K2B (ENSCGOG00000011168)	psmb3 (ENSCGOG00000012333)	PCGF2 (ENSCGOG00000012372)	ENSCGOG00000012376	MLLT6 (ENSCGOG00000012377)	ENSCGOG00000012379	IGFBP4 (ENSCGOG00000012381)	ENSCGOG00000012385	ccr7 (ENSCGOG00000012485)	KRT222 (ENSCGOG00000012489)	krt97 (ENSCGOG00000012511)	RIMS1 (ENSCGOG00000012729)	ENSCGOG00000013545	EEF1A1 (ENSCGOG00000013916)
Tetraodontidae	ANCESTRAL SPECIES	34	ENSGT01050000244961.a.a.a	ENSGT01050000244893.c.b.b.a	ENSGT00390000007786.a.a	ENSGT00940000156686	ENSGT00940000160720.b.a	ENSGT00930000152222	ENSGT01030000234601.n.b.b.h	ENSGT01100000263516.a.a.b	ENSGT00390000006233.c.b.z	ENSGT00390000018868.B.b	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00390000004574	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b
Fugu	MODERN SPECIES	8	CACNG4 (ENSTRUG00000000689)	cacng1a (ENSTRUG00000000658)	helz (ENSTRUG00000000488)	PITPNC1 (ENSTRUG00000000443)	ENSTRUG00000027722	ENSTRUG00000021582	ENSTRUG00000027683	ENSTRUG00000001904	ARHGDIA (ENSTRUG00000032502)	ENSTRUG00000033049	p4hb (ENSTRUG00000003279)	ppp1r27b (ENSTRUG00000028568)	anapc11 (ENSTRUG00000033227)	PLA2G12B (ENSTRUG00000004301)	scrn2 (ENSTRUG00000004440) #23	sp6 (ENSTRUG00000004645) #22	cwc25 (ENSTRUG00000004650)	psmb3 (ENSTRUG00000020542)	PIP4K2B (ENSTRUG00000005059)	PCGF2 (ENSTRUG00000005461)	ENSTRUG00000019673	MLLT6 (ENSTRUG00000005677)	ENSTRUG00000032866	igfbp4 (ENSTRUG00000006441)	SMARCE1 (ENSTRUG00000006702)	ccr7 (ENSTRUG00000019936)	TNS4 (ENSTRUG00000028150)	ENSTRUG00000006989	krt97 (ENSTRUG00000007514)	RIMS1 (ENSTRUG00000008061)	ENSTRUG00000008301
Tetraodon	MODERN SPECIES	10	APOH (ENSTNIG00000014127)	ENSTNIG00000014128	ENSTNIG00000014129	cacng5a (ENSTNIG00000014130)	helz (ENSTNIG00000014131)	PITPNC1 (ENSTNIG00000014132)	ENSTNIG00000014133	ENSTNIG00000014134	ARHGDIA (ENSTNIG00000014135)	ENSTNIG00000014136	p4hb (ENSTNIG00000014137)	ppp1r27b (ENSTNIG00000014138)	anapc11 (ENSTNIG00000014139)	ENSTNIG00000014140	scrn2 (ENSTNIG00000014141) #23	sp6 (ENSTNIG00000014142) #22	cwc25 (ENSTNIG00000014143)	psmb3 (ENSTNIG00000014144)	PIP4K2B (ENSTNIG00000014145)	PCGF2 (ENSTNIG00000014146)	ENSTNIG00000014147	ENSTNIG00000014148	IGFBP4 (ENSTNIG00000014149)	SMARCE1 (ENSTNIG00000014150)	ENSTNIG00000014151	ENSTNIG00000014152	krt97 (ENSTNIG00000014153)	RIMS1 (ENSTNIG00000014154)	ENSTNIG00000014155	EEF1A1 (ENSTNIG00000014156)	RIN2 (ENSTNIG00000014157)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Carangaria	ANCESTRAL SPECIES		ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Carangaria_A	ANCESTRAL SPECIES	53	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Greater amberjack	MODERN SPECIES	20	ENDOV (ENSSDUG00000003581)	NPTX1 (ENSSDUG00000003594)	RPTOR (ENSSDUG00000003627)	ENSSDUG00000003863	p4hb (ENSSDUG00000003928)	ppp1r27b (ENSSDUG00000003960)	anapc11 (ENSSDUG00000003972)	ALYREF (ENSSDUG00000003992)	ARHGDIA (ENSSDUG00000004011)	ppp1r12c (ENSSDUG00000004046)	QPRT (ENSSDUG00000004106)	ENSSDUG00000004152	ENSSDUG00000004213	PLA2G12B (ENSSDUG00000004225)	scrn2 (ENSSDUG00000004242) #23	sp6 (ENSSDUG00000004269) #22	cwc25 (ENSSDUG00000004302)	psmb3 (ENSSDUG00000004313)	PIP4K2B (ENSSDUG00000004328)	PCGF2 (ENSSDUG00000004355)	ENSSDUG00000004372	ENSSDUG00000004391	ENSSDUG00000004409	IGFBP4 (ENSSDUG00000004535)	SMARCE1 (ENSSDUG00000004575)	ccr7 (ENSSDUG00000004599)	TNS4 (ENSSDUG00000004606)	KRT222 (ENSSDUG00000004623)	krt97 (ENSSDUG00000004640)	RIMS1 (ENSSDUG00000004667)	ENSSDUG00000004802
Yellowtail amberjack	MODERN SPECIES	2917						anapc11 (ENSSLDG00000005334)	ALYREF (ENSSLDG00000005386)	ARHGDIA (ENSSLDG00000005414)	ppp1r12c (ENSSLDG00000005464)	QPRT (ENSSLDG00000005532)	ENSSLDG00000005549	ENSSLDG00000005582	ENSSLDG00000005669	PLA2G12B (ENSSLDG00000005688)	scrn2 (ENSSLDG00000005719) #23	sp6 (ENSSLDG00000005744) #22	cwc25 (ENSSLDG00000005761)	psmb3 (ENSSLDG00000005782)	PIP4K2B (ENSSLDG00000005820)	PCGF2 (ENSSLDG00000005848)	ENSSLDG00000005874	ENSSLDG00000005895	ENSSLDG00000005941	IGFBP4 (ENSSLDG00000005980)	SMARCE1 (ENSSLDG00000006022)	ccr7 (ENSSLDG00000006071)	TNS4 (ENSSLDG00000006086)	ENSSLDG00000006101	krt97 (ENSSLDG00000006134)	RIMS1 (ENSSLDG00000006173)	ENSSLDG00000006336
Barramundi perch	MODERN SPECIES	78	RPTOR (ENSLCAG00010010545)	ENSLCAG00010010482	p4hb (ENSLCAG00010010453)	ppp1r27b (ENSLCAG00010010438)	anapc11 (ENSLCAG00010010435)	ENSLCAG00010010431	ENSLCAG00010010429	ARHGDIA (ENSLCAG00010010426)	ppp1r12c (ENSLCAG00010010417)	QPRT (ENSLCAG00010010413)	ENSLCAG00010010399	ENSLCAG00010010365	ENSLCAG00010010345	PLA2G12B (ENSLCAG00010010337)	scrn2 (ENSLCAG00010010329) #23	sp6 (ENSLCAG00010010305) #22	ENSLCAG00010010293	cwc25 (ENSLCAG00010010290)	psmb3 (ENSLCAG00010010283)	PIP4K2B (ENSLCAG00010009836)	PCGF2 (ENSLCAG00010009756)	ENSLCAG00010009755	ENSLCAG00010009753	ENSLCAG00010009750	ENSLCAG00010009745	IGFBP4 (ENSLCAG00010009741)	SMARCE1 (ENSLCAG00010009739)	ccr7 (ENSLCAG00010009735)	TNS4 (ENSLCAG00010009731)	ENSLCAG00010009723	ENSLCAG00010009719
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT00940000155386.a	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00410000025615	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00390000004574	ENSGT00940000165589.b	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT00940000164415	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655
Turbot	MODERN SPECIES	20	ENSSMAG00000011521	ENSSMAG00000025058	RPTOR (ENSSMAG00000011312)	ENSSMAG00000011244	ENSSMAG00000011219	PPP1R27 (ENSSMAG00000011215)	ENSSMAG00000011206	ENSSMAG00000011169	ARHGDIA (ENSSMAG00000011165)	ENSSMAG00000011110	ENSSMAG00000011098	ENSSMAG00000011013	ENSSMAG00000010998	ENSSMAG00000010990	ENSSMAG00000010973 #23	ENSSMAG00000010966 #22	ENSSMAG00000010953	ENSSMAG00000010938	ENSSMAG00000010892	ENSSMAG00000010883	ENSSMAG00000025924	ENSSMAG00000010788	ENSSMAG00000010750	ENSSMAG00000010766	ENSSMAG00000033401	ENSSMAG00000028167	ENSSMAG00000010672	ENSSMAG00000010660	ENSSMAG00000010642	ENSSMAG00000010629	ENSSMAG00000034272
Tongue sole	MODERN SPECIES	19										ppp1r12c (ENSCSEG00000016438)	QPRT (ENSCSEG00000016436)	ENSCSEG00000016341	ENSCSEG00000016329	PLA2G12B (ENSCSEG00000016322)	scrn2 (ENSCSEG00000016312) #23	sp6 (ENSCSEG00000016307) #22	cwc25 (ENSCSEG00000016305)	psmb3 (ENSCSEG00000016289)	PIP4K2B (ENSCSEG00000016276)	PCGF2 (ENSCSEG00000016264)	ENSCSEG00000016258	ENSCSEG00000016247	aspscr1 (ENSCSEG00000016235)	ENSCSEG00000016228	ENSCSEG00000016224	tk1 (ENSCSEG00000016219)	afmid (ENSCSEG00000016202)	ldb1b (ENSCSEG00000016177)	armh3 (ENSCSEG00000016153)	jupa (ENSCSEG00000016113)	ENSCSEG00000016091
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Zig-zag eel	MODERN SPECIES		ENDOV (ENSMAMG00000005788)	ENSMAMG00000005769	RPTOR (ENSMAMG00000005603)	ENSMAMG00000005505	ENSMAMG00000005484	PPP1R27 (ENSMAMG00000005477)	ENSMAMG00000024335	ENSMAMG00000005464	ARHGDIA (ENSMAMG00000005441)	ENSMAMG00000005377	ENSMAMG00000005338	ENSMAMG00000005269	ENSMAMG00000005236	ENSMAMG00000005225	ENSMAMG00000005212 #23	ENSMAMG00000005207 #22	ENSMAMG00000005194	ENSMAMG00000005176	ENSMAMG00000027210	ENSMAMG00000027712	ENSMAMG00000005098	ENSMAMG00000005080	ENSMAMG00000005064	ENSMAMG00000005046	IGFBP4 (ENSMAMG00000024259)	SMARCE1 (ENSMAMG00000004987)	ENSMAMG00000004972	TNS4 (ENSMAMG00000004954)	KRT222 (ENSMAMG00000004914)	ENSMAMG00000004898	ENSMAMG00000004685
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000011880.b	ENSGT01060000248591.a.a.b.a.b	ENSGT00640000091541	ENSGT01070000253837.c	ENSGT00940000157351	ENSGT00940000159603.b	ENSGT00550000075186	ENSGT00940000155397.a.a.c.b.b.a	ENSGT00390000018868.B.b	ENSGT00390000006233.c.b.z	ENSGT00940000161425	ENSGT00390000002761	ENSGT00940000154838.A.f.b.a	ENSGT00390000008798.d.a	ENSGT00390000013474.b.a #23	ENSGT00940000161498 #22	ENSGT00440000039055	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000159730	ENSGT00940000165589.b	ENSGT00940000165589.a	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z
Climbing perch	MODERN SPECIES		RPTOR (ENSATEG00000000099)	ENSATEG00000000276	ENSATEG00000000306	ENSATEG00000000363	ANAPC11 (ENSATEG00000000368)	ENSATEG00000000371	ENSATEG00000000382	ENSATEG00000000414	ENSATEG00000000439	ENSATEG00000000518	ENSATEG00000000538	ENSATEG00000000674	ENSATEG00000000747	PLA2G12B (ENSATEG00000028640)	ENSATEG00000000776 #23	ENSATEG00000000781 #22	ENSATEG00000000799	ENSATEG00000000850	ENSATEG00000000878	ENSATEG00000000924	ENSATEG00000027169	ENSATEG00000029246	ENSATEG00000026777	ENSATEG00000000975	IGFBP4 (ENSATEG00000029296)	SMARCE1 (ENSATEG00000001011)	ENSATEG00000001048	TNS4 (ENSATEG00000001057)	ENSATEG00000001064	ENSATEG00000001074	ENSATEG00000001090
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000016168	RPTOR (ENSBSLG00000015895)	ENSBSLG00000015868	p4hb (ENSBSLG00000015266)	ppp1r27b (ENSBSLG00000015036)	anapc11 (ENSBSLG00000015032)	ENSBSLG00000015029	ARHGDIA (ENSBSLG00000015005)	ppp1r12c (ENSBSLG00000014946)	QPRT (ENSBSLG00000014932)	ENSBSLG00000014724	ENSBSLG00000014664	ENSBSLG00000014559	PLA2G12B (ENSBSLG00000014546)	scrn2 (ENSBSLG00000014246) #23	SP6 (ENSBSLG00000014223) #22	psmb3 (ENSBSLG00000014211)	cwc25 (ENSBSLG00000014179)	PIP4K2B (ENSBSLG00000013638)	ENSBSLG00000013577	ENSBSLG00000013548	ENSBSLG00000013536	ENSBSLG00000013529	IGFBP4 (ENSBSLG00000013496)	SMARCE1 (ENSBSLG00000013234)	ENSBSLG00000013189	TNS4 (ENSBSLG00000013135)	ENSBSLG00000013096	krt97 (ENSBSLG00000013055)	RIMS1 (ENSBSLG00000012635)	ENSBSLG00000012166
Tiger tail seahorse	MODERN SPECIES	282														ENSHCOG00000002477	scrn2 (ENSHCOG00000002463) #23	ENSHCOG00000002444 #22	cwc25 (ENSHCOG00000002434)	psmb3 (ENSHCOG00000002426)	PIP4K2B (ENSHCOG00000002414)	ENSHCOG00000002406	ENSHCOG00000002396	ENSHCOG00000002394	ENSHCOG00000002382	ENSHCOG00000002378	ENSHCOG00000002365	IGFBP4 (ENSHCOG00000002356)	SMARCE1 (ENSHCOG00000002350)	ccr7 (ENSHCOG00000002334)	ENSHCOG00000002328	KRT222 (ENSHCOG00000002317)	krt97 (ENSHCOG00000002298)
Pinecone sodierfish	MODERN SPECIES		SEC14L1 (ENSMMDG00005007089)	ENDOV (ENSMMDG00005007139)	NPTX1 (ENSMMDG00005007140)	RPTOR (ENSMMDG00005007160)	ENSMMDG00005008872	p4hb (ENSMMDG00005008877)	ppp1r27b (ENSMMDG00005008918)	anapc11 (ENSMMDG00005008927)	ALYREF (ENSMMDG00005008930)	ARHGDIA (ENSMMDG00005008934)	ppp1r12c (ENSMMDG00005008940)	QPRT (ENSMMDG00005008942)	ENSMMDG00005008949	PLA2G12B (ENSMMDG00005008964)	scrn2 (ENSMMDG00005008966) #23	sp6 (ENSMMDG00005008967) #22	cwc25 (ENSMMDG00005008969)	psmb3 (ENSMMDG00005008971)	PIP4K2B (ENSMMDG00005009013)	ENSMMDG00005011086	ENSMMDG00005011089	ENSMMDG00005011094	ENSMMDG00005011097	IGFBP4 (ENSMMDG00005011101)	ENSMMDG00005011107	ccr7 (ENSMMDG00005002640)	KRT222 (ENSMMDG00005002657)	krt97 (ENSMMDG00005002686)	RIMS1 (ENSMMDG00005002730)	ENSMMDG00005002966	ENSMMDG00005004464
Cod	MODERN SPECIES	16	ENDOV (ENSGMOG00000017580)	ENSGMOG00000008585	RPTOR (ENSGMOG00000013162)	ENSGMOG00000022507	ENSGMOG00000013136	ENSGMOG00000013131	ANAPC11 (ENSGMOG00000031405)	ENSGMOG00000024527	ARHGDIA (ENSGMOG00000036600)	ENSGMOG00000013089	ENSGMOG00000013083	ENSGMOG00000013045	ENSGMOG00000013035	ENSGMOG00000026681	ENSGMOG00000013009 #23	ENSGMOG00000020473 #22	ENSGMOG00000013001	ENSGMOG00000012997	ENSGMOG00000035645	ENSGMOG00000012982	ENSGMOG00000025980	ENSGMOG00000037042	ENSGMOG00000031763	ENSGMOG00000012958	ENSGMOG00000012950	ENSGMOG00000020472	ENSGMOG00000024201	ENSGMOG00000012911	ENSGMOG00000012882	ENSGMOG00000017769	ENSGMOG00000034797
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000161498 #22
P. kingsleyae	MODERN SPECIES	21	ENSPKIG00000006539	CGAS (ENSPKIG00000006564)	ENSPKIG00000006606	ENSPKIG00000006640	RIMS1 (ENSPKIG00000006743)	cwc25 (ENSPKIG00000007116)	rpl23 (ENSPKIG00000007151)	ENSPKIG00000007182	psmb3 (ENSPKIG00000007218)	ENSPKIG00000007254	ENSPKIG00000007284	KRT222 (ENSPKIG00000007309)	krt97 (ENSPKIG00000007337)	ENSPKIG00000007357 #32	ENSPKIG00000007402	sp6 (ENSPKIG00000007504) #22	ENSPKIG00000007519	mrpl45 (ENSPKIG00000007551) #31	ENSPKIG00000007597	ccr7 (ENSPKIG00000007679)	SMARCE1 (ENSPKIG00000007708)	krt94 (ENSPKIG00000007736)	sp2 (ENSPKIG00000007769) #21	npepps (ENSPKIG00000007832) #30	ENSPKIG00000007889	ENSPKIG00000007944	RNF40 (ENSPKIG00000007994)	mrpl4 (ENSPKIG00000008086)	ENSPKIG00000008104	ENSPKIG00000008132	chmp2a (ENSPKIG00000008158)
Spotted gar	MODERN SPECIES	653	ENSLOCG00000013599	krt94 (ENSLOCG00000013607)	krt98 (ENSLOCG00000013624)	krt99 (ENSLOCG00000013640)	eif1 (ENSLOCG00000013648)	ENSLOCG00000013653	jupa (ENSLOCG00000013664)	MLLT6 (ENSLOCG00000013676)	ENSLOCG00000013683 #37	ENSLOCG00000013685	ENSLOCG00000013689	psmb3 (ENSLOCG00000013692)	PIP4K2B (ENSLOCG00000013700)	cwc25 (ENSLOCG00000013707)	rpl23 (ENSLOCG00000013711)	sp6 (ENSLOCG00000013714) #22	scrn2 (ENSLOCG00000013717) #23	ENSLOCG00000013725 #24	sp2 (ENSLOCG00000013729) #21	socs7 (ENSLOCG00000013736) #33	ENSLOCG00000013743 #32	mrpl45 (ENSLOCG00000013748) #31	kpnb1 (ENSLOCG00000013753) #29	npepps (ENSLOCG00000013761) #30	ENSLOCG00000013776	ENSLOCG00000013783	ENSLOCG00000013786	ENSLOCG00000013789
Reedfish	MODERN SPECIES	5	IGFBP4 (ENSECRG00000020370)	ENSECRG00000020379	ENSECRG00000020399	ENSECRG00000020410	ENSECRG00000020424	IKZF3 (ENSECRG00000020457)	ENSECRG00000020548	ENSECRG00000021253	MLLT6 (ENSECRG00000021273)	ENSECRG00000021306	ENSECRG00000021318	psmb3 (ENSECRG00000021352)	PIP4K2B (ENSECRG00000021387)	cwc25 (ENSECRG00000021449)	rpl23 (ENSECRG00000021683)	sp6 (ENSECRG00000021701) #22	scrn2 (ENSECRG00000021718) #23	ENSECRG00000021739 #24	ENSECRG00000021760	osbpl7 (ENSECRG00000021785) #26	tbx21 (ENSECRG00000021828)	TBKBP1 (ENSECRG00000021849) #28	kpnb1 (ENSECRG00000021968) #29	npepps (ENSECRG00000022066) #30	ENSECRG00000022086	ENSECRG00000022093	mrpl45 (ENSECRG00000022099) #31	ENSECRG00000022119 #32	socs7 (ENSECRG00000022134) #33	sp2 (ENSECRG00000022144) #21	pnpo (ENSECRG00000022161) #20
Elephant shark	MODERN SPECIES	1917															MED1 (ENSCMIG00000014098)	SP6 (ENSCMIG00000014095) #22