Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000005342 #7	ENSGT00390000013043 #8	ENSGT00950000182932.B #9	ENSGT00940000159015	ENSGT00390000011904 #11	ENSGT00940000160120 #12	ENSGT00940000157217 #13	ENSGT00500000045231 #14	ENSGT00390000010318 #15	ENSGT00390000000973.a.b #16	ENSGT00510000046908.a.b #17	ENSGT00390000002216 #18	ENSGT00940000158581 #19	ENSGT00830000128422 #20	ENSGT00390000017459 #21	ENSGT00940000160151 #22	ENSGT00960000190697	ENSGT00390000015863 #23	ENSGT00390000002245	ENSGT00940000159741	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000005342 #7	ENSGT00390000013043 #8	ENSGT00950000182932.B #9	ENSGT00940000159015	ENSGT00390000011904.k #11	ENSGT00940000160120 #12	ENSGT00940000157217 #13	ENSGT00500000045231 #14	ENSGT00390000010318 #15	ENSGT00390000000973.a.b #16	ENSGT00510000046908.a.b #17	ENSGT00390000002216 #18	ENSGT00940000158581 #19	ENSGT00830000128422 #20	ENSGT00390000017459 #21	ENSGT00940000160151 #22	ENSGT00390000015863.i #23	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a
Goat	MODERN SPECIES	25	NELFA (ENSCHIG00000018283) #7	C4orf48 (ENSCHIG00000002106) #8	NAT8L (ENSCHIG00000015781) #9	ENSCHIG00000007680 #10	ENSCHIG00000014089 #11	MXD4 (ENSCHIG00000024119) #12	ZFYVE28 (ENSCHIG00000011539) #13	CFAP99 (ENSCHIG00000015798) #14	RNF4 (ENSCHIG00000003435) #15	FAM193A (ENSCHIG00000022591) #16	TNIP2 (ENSCHIG00000013890) #17	SH3BP2 (ENSCHIG00000011116) #18	ADD1 (ENSCHIG00000023797) #19	ENSCHIG00000014284 #20	NOP14 (ENSCHIG00000026702) #21	GRK4 (ENSCHIG00000021914) #22	ENSCHIG00000026634 #23	NKX1-1 (ENSCHIG00000025512) #24	UVSSA (ENSCHIG00000019552) #25	MAEA (ENSCHIG00000025892) #26	CTBP1 (ENSCHIG00000025244) #27	SPON2 (ENSCHIG00000018579) #28	ENSCHIG00000012949 #29	IDUA (ENSCHIG00000025809) #30	SLC26A1 (ENSCHIG00000004233) #31	DGKQ (ENSCHIG00000022963) #32	CPLX1 (ENSCHIG00000012118) #33	PCGF3 (ENSCHIG00000017751) #34	SLC49A3 (ENSCHIG00000024366) #35	ENSCHIG00000013611 #36	PDE6B (ENSCHIG00000020394) #37
Rambouillet Sheep	MODERN SPECIES	22	NAT8L (ENSOARG00020023001) #9	ENSOARG00020022986 #10	POLN (ENSOARG00020022890)	HAUS3 (ENSOARG00020022851) #11	MXD4 (ENSOARG00020022801) #12	ENSOARG00020022734 #13	ENSOARG00020022674 #13	CFAP99 (ENSOARG00020022601) #14	RNF4 (ENSOARG00020022503) #15	FAM193A (ENSOARG00020022278) #16	TNIP2 (ENSOARG00020022129) #17	SH3BP2 (ENSOARG00020021902) #18	ADD1 (ENSOARG00020021785) #19	ENSOARG00020021647 #20	NOP14 (ENSOARG00020021463) #21	GRK4 (ENSOARG00020021071) #22	HTT (ENSOARG00020020229) #23	MSANTD1 (ENSOARG00020020116)	RGS12 (ENSOARG00020019415)	HGFAC (ENSOARG00020019211)	DOK7 (ENSOARG00020019127)	LRPAP1 (ENSOARG00020019028)	ADRA2C (ENSOARG00020018999)	HMX1 (ENSOARG00020018963)	CPZ (ENSOARG00020018772)	ENSOARG00020018563	ACOX3 (ENSOARG00020018378)	HTRA3 (ENSOARG00020018235)	SH3TC1 (ENSOARG00020017981)	ABLIM2 (ENSOARG00020012027)	AFAP1 (ENSOARG00020011241)
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000005342 #7	ENSGT00390000013043 #8	ENSGT00950000182932.B #9	ENSGT00940000159015	ENSGT00390000011904 #11	ENSGT00940000160120 #12	ENSGT00940000157217 #13	ENSGT00500000045231 #14	ENSGT00390000010318 #15	ENSGT00390000000973.a.b #16	ENSGT00510000046908.a.b #17	ENSGT00390000002216 #18	ENSGT00940000158581 #19	ENSGT00830000128422 #20	ENSGT00390000017459 #21	ENSGT00940000160151 #22	ENSGT00960000190697	ENSGT00390000015863 #23	ENSGT00390000002245	ENSGT00940000159741.t	ENSGT00940000159741.s	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423
Bos	ANCESTRAL SPECIES	15	ENSGT00390000005342 #7	ENSGT00390000013043 #8	ENSGT00950000182932.B #9	ENSGT00940000159015	ENSGT00390000011904 #11	ENSGT00940000160120 #12	ENSGT00940000157217 #13	ENSGT00500000045231 #14	ENSGT00390000010318 #15	ENSGT00390000000973.a.b #16	ENSGT00510000046908.a.b #17	ENSGT00390000002216 #18	ENSGT00940000158581 #19	ENSGT00830000128422 #20	ENSGT00390000017459 #21	ENSGT00940000160151 #22	ENSGT00390000015863 #23	ENSGT00390000002245	ENSGT00940000159741.t	ENSGT00940000159741.s	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855.c	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570
Bos_b	ANCESTRAL SPECIES	14	ENSGT00390000005342 #7	ENSGT00390000013043 #8	ENSGT00950000182932.B #9	ENSGT00940000159015	ENSGT00390000011904 #11	ENSGT00940000160120 #12	ENSGT00940000157217 #13	ENSGT00500000045231 #14	ENSGT00390000010318 #15	ENSGT00390000000973.a.b #16	ENSGT00510000046908.a.b #17	ENSGT00390000002216 #18	ENSGT00940000158581 #19	ENSGT00830000128422 #20	ENSGT00390000017459 #21	ENSGT00940000160151 #22	ENSGT00390000015863 #23	ENSGT00390000002245	ENSGT00940000159741.t	ENSGT00940000159741.s	ENSGT00960000192929	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855.c	ENSGT01100000263828.b	ENSGT00940000161707.b	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570
Hybrid Bos Indicus	MODERN SPECIES	25	NAT8L (ENSBIXG00005008838) #9	ENSBIXG00005006191	POLN (ENSBIXG00005000322)	ENSBIXG00005008965 #11	MXD4 (ENSBIXG00005008980) #12	ENSBIXG00005009002 #13	ENSBIXG00005009025 #13	CFAP99 (ENSBIXG00005009067) #14	RNF4 (ENSBIXG00005005461) #15	FAM193A (ENSBIXG00005009399) #16	TNIP2 (ENSBIXG00005009483) #17	SH3BP2 (ENSBIXG00005009588) #18	ADD1 (ENSBIXG00005009740) #19	ENSBIXG00005009806 #20	NOP14 (ENSBIXG00005009826) #21	GRK4 (ENSBIXG00005010030) #22	HTT (ENSBIXG00005006419) #23	MSANTD1 (ENSBIXG00005010285)	RGS12 (ENSBIXG00005010377)	DOK7 (ENSBIXG00005010412)	ENSBIXG00005010446	ENSBIXG00005010466	ADRA2C (ENSBIXG00005010512)	HMX1 (ENSBIXG00005010552)	CPZ (ENSBIXG00005000693)	TRMT44 (ENSBIXG00005010670)	ACOX3 (ENSBIXG00005010819)	HTRA3 (ENSBIXG00005000973)	SH3TC1 (ENSBIXG00005000986)	ABLIM2 (ENSBIXG00005001027)	ENSBIXG00005001052
Cow	MODERN SPECIES	25	NELFA (ENSBTAG00000017921) #7	C6H4orf48 (ENSBTAG00000031395) #8	ENSBTAG00000053874 #9	POLN (ENSBTAG00000017296)	HAUS3 (ENSBTAG00000024787) #11	MXD4 (ENSBTAG00000015209) #12	ZFYVE28 (ENSBTAG00000006683) #13	CFAP99 (ENSBTAG00000054376) #14	RNF4 (ENSBTAG00000027453) #15	FAM193A (ENSBTAG00000009744) #16	TNIP2 (ENSBTAG00000015126)	SH3BP2 (ENSBTAG00000013996) #18	ADD1 (ENSBTAG00000021128) #19	MFSD10 (ENSBTAG00000021130) #20	NOP14 (ENSBTAG00000001504) #21	GRK4 (ENSBTAG00000001505) #22	ENSBTAG00000054535	HTT (ENSBTAG00000001506) #23	MSANTD1 (ENSBTAG00000003776)	ENSBTAG00000052058	ENSBTAG00000052328	ENSBTAG00000016714	HGFAC (ENSBTAG00000017335)	DOK7 (ENSBTAG00000009742)	LRPAP1 (ENSBTAG00000000073)	ADRA2C (ENSBTAG00000045994)	HMX1 (ENSBTAG00000031197)	CPZ (ENSBTAG00000014803)	TRMT44 (ENSBTAG00000004797)	ACOX3 (ENSBTAG00000004893)	HTRA3 (ENSBTAG00000047613)
Bos_a	ANCESTRAL SPECIES	61	ENSGT00390000005342 #7	ENSGT00390000013043 #8	ENSGT00950000182932.B #9	ENSGT00940000159015	ENSGT00390000011904 #11	ENSGT00940000160120 #12	ENSGT00940000157217 #13	ENSGT00500000045231 #14	ENSGT00390000010318 #15	ENSGT00390000000973.a.b #16	ENSGT00510000046908.a.b #17	ENSGT00390000002216 #18	ENSGT00940000158581 #19	ENSGT00830000128422 #20	ENSGT00390000017459 #21	ENSGT00940000160151 #22	ENSGT00390000015863 #23	ENSGT00390000002245	ENSGT00940000159741.s	ENSGT00940000159778	ENSGT00390000015386	ENSGT00390000004855.c	ENSGT00940000162580	ENSGT00940000156391	ENSGT00390000000645	ENSGT00940000159423	ENSGT00940000159570	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT00940000164031
Domestic yak	MODERN SPECIES	25	ENSBGRG00000016908 #9	POLN (ENSBGRG00000016638)	ENSBGRG00000016598 #27	HAUS3 (ENSBGRG00000016524) #11	ENSBGRG00000016319 #12	ENSBGRG00000016224 #13	ENSBGRG00000016089 #13	CFAP99 (ENSBGRG00000015852) #14	RNF4 (ENSBGRG00000015725) #15	FAM193A (ENSBGRG00000015247) #16	TNIP2 (ENSBGRG00000015105) #17	SH3BP2 (ENSBGRG00000014755) #18	ADD1 (ENSBGRG00000014564) #19	ENSBGRG00000014329 #20	NOP14 (ENSBGRG00000014192) #21	GRK4 (ENSBGRG00000013724) #22	HTT (ENSBGRG00000008977) #23	MSANTD1 (ENSBGRG00000008700)	ENSBGRG00000008554	HGFAC (ENSBGRG00000008451)	DOK7 (ENSBGRG00000008376)	LRPAP1 (ENSBGRG00000008251)	ENSBGRG00000008212	HMX1 (ENSBGRG00000010610)	CPZ (ENSBGRG00000010490)	TRMT44 (ENSBGRG00000010431)	ACOX3 (ENSBGRG00000009913)	HTRA3 (ENSBGRG00000009786)	SH3TC1 (ENSBGRG00000009550)	ABLIM2 (ENSBGRG00000008458)	AFAP1 (ENSBGRG00000008121)
Wild yak	MODERN SPECIES	651						HAUS3 (ENSBMUG00000024829) #11	ENSBMUG00000024833 #12	ENSBMUG00000024846 #13	CFAP99 (ENSBMUG00000024856) #14	RNF4 (ENSBMUG00000024879) #15	FAM193A (ENSBMUG00000024969) #16	ENSBMUG00000024982	SH3BP2 (ENSBMUG00000024994) #18	ADD1 (ENSBMUG00000025041) #19	NOP14 (ENSBMUG00000025142) #21	GRK4 (ENSBMUG00000025302) #22	HTT (ENSBMUG00000026120) #23	MSANTD1 (ENSBMUG00000026206)
American bison	MODERN SPECIES	1988														ENSBBBG00000004613	NOP14 (ENSBBBG00000018601) #21	GRK4 (ENSBBBG00000018548) #22	ENSBBBG00000018450	ENSBBBG00000018444 #23	MSANTD1 (ENSBBBG00000018436)	ENSBBBG00000006965	ENSBBBG00000018405	HGFAC (ENSBBBG00000018371)	ENSBBBG00000018258