Rodentia	ANCESTRAL SPECIES	24	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00410000028443	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Rodentia_B	ANCESTRAL SPECIES	32	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Myomorpha	ANCESTRAL SPECIES	34	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Muroidea	ANCESTRAL SPECIES	35	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000154775.c.b #9	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836
Prairie vole	MODERN SPECIES	3	Plxdc2 (ENSMOCG00000000221) #7	ENSMOCG00000019870 #8	ENSMOCG00000014869 #9	ENSMOCG00000013215 #10	ENSMOCG00000015083 #11	ENSMOCG00000010042 #12	Mllt10 (ENSMOCG00000019375) #13	ENSMOCG00000012260 #14	Dnajc1 (ENSMOCG00000020661) #15	Commd3 (ENSMOCG00000013135) #16	Bmi1 (ENSMOCG00000001923) #17	Spag6 (ENSMOCG00000012127) #18	Pip4k2a (ENSMOCG00000014771) #19	Armc3 (ENSMOCG00000016132) #20	Msrb2 (ENSMOCG00000002345) #21	Ptf1a (ENSMOCG00000021307) #22	4921504E06Rik (ENSMOCG00000022878) #23	ENSMOCG00000019005 #24	Plekhh2 (ENSMOCG00000021081) #25	ENSMOCG00000022049 #26	Dync2li1 (ENSMOCG00000008462) #27	Abcg5 (ENSMOCG00000014554) #28	Abcg8 (ENSMOCG00000006071) #29	ENSMOCG00000006048 #30	Ppm1b (ENSMOCG00000004793) #31	Slc3a1 (ENSMOCG00000016321) #32	Prepl (ENSMOCG00000003160) #33	Camkmt (ENSMOCG00000019864) #34	ENSMOCG00000021682 #35	Six3 (ENSMOCG00000003464) #36	Six2 (ENSMOCG00000012865) #37
Northern American deer mouse	MODERN SPECIES	18	Malrd1 (ENSPEMG00000012195)	Plxdc2 (ENSPEMG00000016755) #7	Nebl (ENSPEMG00000022900) #11	Skida1 (ENSPEMG00000002718) #12	Mllt10 (ENSPEMG00000006812) #13	ENSPEMG00000013058	Dnajc1 (ENSPEMG00000008697) #15	ENSPEMG00000029096	Commd3 (ENSPEMG00000009565) #16	Bmi1 (ENSPEMG00000029551) #17	Spag6 (ENSPEMG00000026080) #18	Pip4k2a (ENSPEMG00000011868) #19	Armc3 (ENSPEMG00000012860) #20	Msrb2 (ENSPEMG00000024021) #21	ENSPEMG00000025913	Ptf1a (ENSPEMG00000013454) #22	Etl4 (ENSPEMG00000016350)	Arhgap21 (ENSPEMG00000016926)	ENSPEMG00000008669	Enkur (ENSPEMG00000019522)	Thnsl1 (ENSPEMG00000019380)	Gpr158 (ENSPEMG00000020025)	Myo3a (ENSPEMG00000019498)	Gad2 (ENSPEMG00000019483)	Apbb1ip (ENSPEMG00000023687)	Pdss1 (ENSPEMG00000014017)	Abi1 (ENSPEMG00000022633)	Acbd5 (ENSPEMG00000022231)	Mastl (ENSPEMG00000022732)	Yme1l1 (ENSPEMG00000022499)	ENSPEMG00000026720
Cricetinae	ANCESTRAL SPECIES	26	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000154775.c.b #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Chinese hamster chok1gshd	MODERN SPECIES	317	Cacnb2 (ENSCGRG00001017190)	Nsun6 (ENSCGRG00001023166)	Arl5b (ENSCGRG00001016642)	Malrd1 (ENSCGRG00001022517)	Plxdc2 (ENSCGRG00001024180) #7	Nebl (ENSCGRG00001009495) #11	Skida1 (ENSCGRG00001015186) #12	Mllt10 (ENSCGRG00001013820) #13	Dnajc1 (ENSCGRG00001020513) #15	Commd3 (ENSCGRG00001017290) #16	Bmi1 (ENSCGRG00001001400) #17	Spag6 (ENSCGRG00001015624) #18	Pip4k2a (ENSCGRG00001007191) #19	Armc3 (ENSCGRG00001020234) #20	Msrb2 (ENSCGRG00001021607) #21	Ptf1a (ENSCGRG00001018977) #22	4921504E06Rik (ENSCGRG00001011440) #23	ENSCGRG00001010382	Otud1 (ENSCGRG00001005968)	Etl4 (ENSCGRG00001017877)	Arhgap21 (ENSCGRG00001016768)	ENSCGRG00001021203	Enkur (ENSCGRG00001019789)	Thnsl1 (ENSCGRG00001002158)	ENSCGRG00001000506	Gpr158 (ENSCGRG00001020901)	ENSCGRG00001008346	Myo3a (ENSCGRG00001010156)	Gad2 (ENSCGRG00001016806)	Apbb1ip (ENSCGRG00001024669)	ENSCGRG00001021110
Golden Hamster	MODERN SPECIES	751			ENSMAUG00000018668 #11	ENSMAUG00000017747 #11	ENSMAUG00000000039 #9	Skida1 (ENSMAUG00000018417) #12	ENSMAUG00000017173 #13	ENSMAUG00000017357 #13	Dnajc1 (ENSMAUG00000004858) #15	Commd3 (ENSMAUG00000017810) #16	Bmi1 (ENSMAUG00000012431) #17	Spag6 (ENSMAUG00000016297) #18	Pip4k2a (ENSMAUG00000012593) #19	Armc3 (ENSMAUG00000010005) #20	Msrb2 (ENSMAUG00000011556) #21	Ptf1a (ENSMAUG00000010725) #22	4921504E06Rik (ENSMAUG00000011632) #23	Otud1 (ENSMAUG00000009704)	ENSMAUG00000009350	ENSMAUG00000004145	Arhgap21 (ENSMAUG00000003592)	Enkur (ENSMAUG00000000129)	Thnsl1 (ENSMAUG00000018216)	Gpr158 (ENSMAUG00000018973)	ENSMAUG00000007073	ENSMAUG00000018624	Gad2 (ENSMAUG00000017847)	Apbb1ip (ENSMAUG00000014421)	Pdss1 (ENSMAUG00000000067)	Abi1 (ENSMAUG00000018844)	Mastl (ENSMAUG00000013771)
Murinae	ANCESTRAL SPECIES	27	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Mus	ANCESTRAL SPECIES	1	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00860000136241	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00950000183868	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00860000136241	ENSGT00940000162492.g.a	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00950000183868	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00860000136241	ENSGT00940000162492.g.a	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Mus_C	ANCESTRAL SPECIES	30	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00860000136241	ENSGT00940000162492.g.a	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.d #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
spretus	MODERN SPECIES	11	Arl5b (MGP_SPRETEiJ_G0024113)	Malrd1 (MGP_SPRETEiJ_G0024114)	Plxdc2 (MGP_SPRETEiJ_G0024115) #7	Nebl (MGP_SPRETEiJ_G0024116) #11	MGP_SPRETEiJ_G0024117	Skida1 (MGP_SPRETEiJ_G0024118) #12	Mllt10 (MGP_SPRETEiJ_G0024119) #13	Dnajc1 (MGP_SPRETEiJ_G0024120) #15	Commd3 (MGP_SPRETEiJ_G0024121) #16	Bmi1 (MGP_SPRETEiJ_G0024122) #17	Spag6 (MGP_SPRETEiJ_G0024123) #18	Pip4k2a (MGP_SPRETEiJ_G0024124) #19	MGP_SPRETEiJ_G0024125	Armc3 (MGP_SPRETEiJ_G0024126) #20	MGP_SPRETEiJ_G0024127 #21	Ptf1a (MGP_SPRETEiJ_G0024128) #22	4921504E06Rik (MGP_SPRETEiJ_G0024129) #23	Otud1 (MGP_SPRETEiJ_G0024130)	Etl4 (MGP_SPRETEiJ_G0024131)	Arhgap21 (MGP_SPRETEiJ_G0024132)	Enkur (MGP_SPRETEiJ_G0024133)	Thnsl1 (MGP_SPRETEiJ_G0024134)	Gpr158 (MGP_SPRETEiJ_G0024135)	MGP_SPRETEiJ_G0024136	Gad2 (MGP_SPRETEiJ_G0024137)	Apbb1ip (MGP_SPRETEiJ_G0024138)	Pdss1 (MGP_SPRETEiJ_G0024139)	Abi1 (MGP_SPRETEiJ_G0024140)	Acbd5 (MGP_SPRETEiJ_G0024141)	Mastl (MGP_SPRETEiJ_G0024142)	MGP_SPRETEiJ_G0024143
Steppe mouse	MODERN SPECIES	79														Armc3 (ENSMSIG00000011261) #20	ENSMSIG00000011240 #21	Ptf1a (ENSMSIG00000011231) #22	4921504E06Rik (ENSMSIG00000011108) #23	Otud1 (ENSMSIG00000011092)
Mouse	MODERN SPECIES	11	Arl5b (ENSMUSG00000017418)	Malrd1 (ENSMUSG00000075520)	Plxdc2 (ENSMUSG00000026748) #7	Nebl (ENSMUSG00000053702) #11	H2al2a (ENSMUSG00000062651)	Skida1 (ENSMUSG00000054074) #12	Mllt10 (ENSMUSG00000026743) #13	Dnajc1 (ENSMUSG00000026740) #15	Commd3 (ENSMUSG00000051154) #16	Bmi1 (ENSMUSG00000026739) #17	Spag6 (ENSMUSG00000037708) #18	Carlr (ENSMUSG00000097638)	Pip4k2a (ENSMUSG00000026737) #19	Armc3 (ENSMUSG00000037683) #20	Msrb2 (ENSMUSG00000023094) #21	Ptf1a (ENSMUSG00000026735) #22	4921504E06Rik (ENSMUSG00000026734) #23	Otud1 (ENSMUSG00000043415)	Etl4 (ENSMUSG00000036617)	Arhgap21 (ENSMUSG00000036591)	Enkur (ENSMUSG00000026679)	Thnsl1 (ENSMUSG00000048550)	Gpr158 (ENSMUSG00000045967)	Myo3a (ENSMUSG00000025716)	Gad2 (ENSMUSG00000026787)	Apbb1ip (ENSMUSG00000026786)	Pdss1 (ENSMUSG00000026784)	Abi1 (ENSMUSG00000058835)	Acbd5 (ENSMUSG00000026781)	Mastl (ENSMUSG00000026779)	Yme1l1 (ENSMUSG00000026775)
Ryukyu mouse	MODERN SPECIES	11	Malrd1 (MGP_CAROLIEiJ_G0023198)	Plxdc2 (MGP_CAROLIEiJ_G0023199) #7	Nebl (MGP_CAROLIEiJ_G0023200) #11	H2al2a (MGP_CAROLIEiJ_G0023201)	MGP_CAROLIEiJ_G0023202	Skida1 (MGP_CAROLIEiJ_G0023203) #12	Mllt10 (MGP_CAROLIEiJ_G0023204) #13	Dnajc1 (MGP_CAROLIEiJ_G0023205) #15	Commd3 (MGP_CAROLIEiJ_G0023206) #16	Bmi1 (MGP_CAROLIEiJ_G0023207) #17	Spag6 (MGP_CAROLIEiJ_G0023208) #18	Pip4k2a (MGP_CAROLIEiJ_G0023209) #19	MGP_CAROLIEiJ_G0023210	Armc3 (MGP_CAROLIEiJ_G0023211) #20	Msrb2 (MGP_CAROLIEiJ_G0023212) #21	Ptf1a (MGP_CAROLIEiJ_G0023213) #22	4921504E06Rik (MGP_CAROLIEiJ_G0023214) #23	Otud1 (MGP_CAROLIEiJ_G0023215)	Etl4 (MGP_CAROLIEiJ_G0023216)	Arhgap21 (MGP_CAROLIEiJ_G0023217)	Enkur (MGP_CAROLIEiJ_G0023218)	Thnsl1 (MGP_CAROLIEiJ_G0023219)	Gpr158 (MGP_CAROLIEiJ_G0023220)	Myo3a (MGP_CAROLIEiJ_G0023221)	Gad2 (MGP_CAROLIEiJ_G0023222)	Apbb1ip (MGP_CAROLIEiJ_G0023223)	Pdss1 (MGP_CAROLIEiJ_G0023224)	Abi1 (MGP_CAROLIEiJ_G0023225)	Acbd5 (MGP_CAROLIEiJ_G0023226)	MGP_CAROLIEiJ_G0023227	Nxph2 (MGP_CAROLIEiJ_G0023228)
Shrew mouse	MODERN SPECIES	16	Arl5b (MGP_PahariEiJ_G0024654)	Malrd1 (MGP_PahariEiJ_G0024655)	Plxdc2 (MGP_PahariEiJ_G0024656) #7	MGP_PahariEiJ_G0024657 #11	MGP_PahariEiJ_G0024658	Skida1 (MGP_PahariEiJ_G0024659) #12	Mllt10 (MGP_PahariEiJ_G0024660) #13	Dnajc1 (MGP_PahariEiJ_G0024661) #15	Commd3 (MGP_PahariEiJ_G0024662) #16	Bmi1 (MGP_PahariEiJ_G0024663) #17	Spag6 (MGP_PahariEiJ_G0024664) #18	Pip4k2a (MGP_PahariEiJ_G0024665) #19	MGP_PahariEiJ_G0024666	Armc3 (MGP_PahariEiJ_G0024667) #20	Msrb2 (MGP_PahariEiJ_G0024668) #21	Ptf1a (MGP_PahariEiJ_G0024669) #22	4921504E06Rik (MGP_PahariEiJ_G0024670) #23	Otud1 (MGP_PahariEiJ_G0024671)	Etl4 (MGP_PahariEiJ_G0024672)	Arhgap21 (MGP_PahariEiJ_G0024673)	Enkur (MGP_PahariEiJ_G0024674)	Thnsl1 (MGP_PahariEiJ_G0024675)	Gpr158 (MGP_PahariEiJ_G0024676)	Myo3a (MGP_PahariEiJ_G0024677)	Gad2 (MGP_PahariEiJ_G0024678)	Apbb1ip (MGP_PahariEiJ_G0024679)	Pdss1 (MGP_PahariEiJ_G0024680)	Abi1 (MGP_PahariEiJ_G0024681)	Acbd5 (MGP_PahariEiJ_G0024682)	Mastl (MGP_PahariEiJ_G0024683)	Yme1l1 (MGP_PahariEiJ_G0024684)
Rat	MODERN SPECIES	8	Malrd1 (ENSRNOG00000052916)	Plxdc2 (ENSRNOG00000000142) #7	Nebl (ENSRNOG00000049452) #11	AABR07028748.1 (ENSRNOG00000030638)	ENSRNOG00000064328	Skida1 (ENSRNOG00000033330) #12	Mllt10 (ENSRNOG00000022249) #13	Dnajc1 (ENSRNOG00000000150) #15	Commd3 (ENSRNOG00000016383) #16	Bmi1 (ENSRNOG00000016585) #17	Spag6 (ENSRNOG00000022021) #18	Pip4k2a (ENSRNOG00000016670) #19	Armc3 (ENSRNOG00000016716) #20	LOC100912261 (ENSRNOG00000016710)	Msrb2 (ENSRNOG00000016873) #21	Ptf1a (ENSRNOG00000016902) #22	LOC681241 (ENSRNOG00000021898) #23	Otud1 (ENSRNOG00000016950)	Etl4 (ENSRNOG00000008666)	Arhgap21 (ENSRNOG00000008659)	Prtfdc1 (ENSRNOG00000024874)	Enkur (ENSRNOG00000018631)	Thnsl1 (ENSRNOG00000033076)	RGD1566369 (ENSRNOG00000005017)	Gpr158 (ENSRNOG00000024832)	Myo3a (ENSRNOG00000018478)	LOC108348601 (ENSRNOG00000009861) ##14	Gad2 (ENSRNOG00000018200)	Apbb1ip (ENSRNOG00000017803)	Pdss1 (ENSRNOG00000048849)	Abi1 (ENSRNOG00000031325)
Upper Galilee mountains blind mole rat	MODERN SPECIES	766						Skida1 (ENSNGAG00000015063) #12	ENSNGAG00000014094 #13	ENSNGAG00000016959 #13	Dnajc1 (ENSNGAG00000012108) #15	Commd3 (ENSNGAG00000017480) #16	Bmi1 (ENSNGAG00000011641) #17	Spag6 (ENSNGAG00000005709) #18	Pip4k2a (ENSNGAG00000017166) #19	Armc3 (ENSNGAG00000019613) #20	Msrb2 (ENSNGAG00000010957) #21	Ptf1a (ENSNGAG00000019098) #22	ENSNGAG00000020805 #23	Etl4 (ENSNGAG00000018888)	Arhgap21 (ENSNGAG00000023892)	ENSNGAG00000017519	Enkur (ENSNGAG00000022372)	Thnsl1 (ENSNGAG00000012864)	Gpr158 (ENSNGAG00000015623)	ENSNGAG00000003034	ENSNGAG00000005791	Gad2 (ENSNGAG00000011494)	Apbb1ip (ENSNGAG00000013646)	Pdss1 (ENSNGAG00000009014)	Abi1 (ENSNGAG00000020649)	Acbd5 (ENSNGAG00000023308)	Mastl (ENSNGAG00000021730)
Lesser Egyptian jerboa	MODERN SPECIES	155	ENSJJAG00000011711	Plxdc2 (ENSJJAG00000013553) #7	Nebl (ENSJJAG00000021442) #11	Skida1 (ENSJJAG00000019370) #12	Mllt10 (ENSJJAG00000021182) #13	Dnajc1 (ENSJJAG00000010472) #15	ENSJJAG00000011084	Commd3 (ENSJJAG00000012114) #16	Bmi1 (ENSJJAG00000014179) #17	ENSJJAG00000015114 #18	ENSJJAG00000012533	ENSJJAG00000015184	ENSJJAG00000015280	Pip4k2a (ENSJJAG00000017862) #19	Armc3 (ENSJJAG00000019464) #20	Ptf1a (ENSJJAG00000011977) #22	ENSJJAG00000013222 #23	ENSJJAG00000012558	Trappc8 (ENSJJAG00000017593)	ENSJJAG00000012726	ENSJJAG00000012690	ENSJJAG00000008537	ENSJJAG00000010419	ENSJJAG00000011466
Kangaroo rat	MODERN SPECIES	343	Plxdc2 (ENSDORG00000005916) #7	ENSDORG00000025971 #11	ENSDORG00000014081 #11	ENSDORG00000001203 #9	ENSDORG00000006912	Skida1 (ENSDORG00000026721) #12	Mllt10 (ENSDORG00000005045) #13	ENSDORG00000029663	Dnajc1 (ENSDORG00000005047) #15	Commd3 (ENSDORG00000027082) #16	Bmi1 (ENSDORG00000027813) #17	ENSDORG00000005587 #18	Pip4k2a (ENSDORG00000002100) #19	Armc3 (ENSDORG00000000892) #20	Msrb2 (ENSDORG00000007658) #21	Ptf1a (ENSDORG00000026200) #22	Otud1 (ENSDORG00000025924)	Etl4 (ENSDORG00000011137)	Arhgap21 (ENSDORG00000006139)	ENSDORG00000000872	Enkur (ENSDORG00000015534)	Thnsl1 (ENSDORG00000028470)	ENSDORG00000024997	Gpr158 (ENSDORG00000000417)	ENSDORG00000028759	ENSDORG00000028584	Gad2 (ENSDORG00000004189)	Apbb1ip (ENSDORG00000009613)	Pdss1 (ENSDORG00000004641)	Abi1 (ENSDORG00000004644)	Acbd5 (ENSDORG00000011034)
Rodentia_A	ANCESTRAL SPECIES	25	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144.b	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Marmotini	ANCESTRAL SPECIES	21	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144.b	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Marmotini_b	ANCESTRAL SPECIES	15	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00390000006922.m.a	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144.b	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Arctic ground squirrel	MODERN SPECIES	240													ARMC3 (ENSUPAG00010020821) #20	MSRB2 (ENSUPAG00010020854) #21	ENSUPAG00010020861	PTF1A (ENSUPAG00010020868) #22	OTUD1 (ENSUPAG00010020876)	KIAA1217 (ENSUPAG00010020897)	ARHGAP21 (ENSUPAG00010021811)	PRTFDC1 (ENSUPAG00010021815)	ENKUR (ENSUPAG00010021816)	THNSL1 (ENSUPAG00010021817)	GPR158 (ENSUPAG00010021820)	MYO3A (ENSUPAG00010021823)	GAD2 (ENSUPAG00010021871)
Squirrel	MODERN SPECIES	120	NSUN6 (ENSSTOG00000004317)	ARL5B (ENSSTOG00000027859)	MALRD1 (ENSSTOG00000034625)	PLXDC2 (ENSSTOG00000005048) #7	NEBL (ENSSTOG00000020521) #11	SKIDA1 (ENSSTOG00000005865) #12	MLLT10 (ENSSTOG00000016486) #13	DNAJC1 (ENSSTOG00000002303) #15	COMMD3 (ENSSTOG00000001638) #16	BMI1 (ENSSTOG00000001647) #17	SPAG6 (ENSSTOG00000001651) #18	PIP4K2A (ENSSTOG00000001661) #19	ARMC3 (ENSSTOG00000009417) #20	ENSSTOG00000013900 #21	ENSSTOG00000019871	PTF1A (ENSSTOG00000022679) #22	ENSSTOG00000010976 #23	EIF4E (ENSSTOG00000002230)	METAP1 (ENSSTOG00000006210)	ADH5 (ENSSTOG00000006233)	ADH4 (ENSSTOG00000029406)	ENSSTOG00000026896	ENSSTOG00000019811	ADH7 (ENSSTOG00000006815)	C4orf17 (ENSSTOG00000013616)	TRMT10A (ENSSTOG00000005064)	MTTP (ENSSTOG00000006428)	C4orf54 (ENSSTOG00000026836)	DAPP1 (ENSSTOG00000010934)	LAMTOR3 (ENSSTOG00000010944)	DNAJB14 (ENSSTOG00000021338)
Eurasian red squirrel	MODERN SPECIES	3	PLXDC2 (ENSSVLG00005014950) #7	ENSSVLG00005014900	NEBL (ENSSVLG00005014393) #11	ENSSVLG00005014360	ENSSVLG00005014330	SKIDA1 (ENSSVLG00005014278) #12	MLLT10 (ENSSVLG00005013802) #13	DNAJC1 (ENSSVLG00005013420) #15	ENSSVLG00005013284	COMMD3 (ENSSVLG00005018569) #16	ENSSVLG00005018484 #17	SPAG6 (ENSSVLG00005018268) #18	PIP4K2A (ENSSVLG00005018202) #19	ARMC3 (ENSSVLG00005017564) #20	MSRB2 (ENSSVLG00005017505) #21	PTF1A (ENSSVLG00005017462) #22	ENSSVLG00005017420	OTUD1 (ENSSVLG00005016919)	KIAA1217 (ENSSVLG00005015769)	ARHGAP21 (ENSSVLG00005014772)	ENSSVLG00005014651	PRTFDC1 (ENSSVLG00005014583)	ENKUR (ENSSVLG00005014473)	THNSL1 (ENSSVLG00005014444)	ENSSVLG00005014402	GPR158 (ENSSVLG00005014159)	ENSSVLG00005014103	ENSSVLG00005014026	GAD2 (ENSSVLG00005013824)	APBB1IP (ENSSVLG00005013617)	ENSSVLG00005013262
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000035788	ENSHGLG00000006963 #11	SKIDA1 (ENSHGLG00000005858) #12	ENSHGLG00000043040	MLLT10 (ENSHGLG00000004757) #13	DNAJC1 (ENSHGLG00000004425) #15	ENSHGLG00000044999	ENSHGLG00000036320	ENSHGLG00000050921	ENSHGLG00000004324 #16	BMI1 (ENSHGLG00000032421) #17	ENSHGLG00000047021	PIP4K2A (ENSHGLG00000041790) #19	ARMC3 (ENSHGLG00000010508) #20	MSRB2 (ENSHGLG00000009558) #21	ENSHGLG00000013293 #22	ENSHGLG00000038637 #26	ENSHGLG00000011626 #16	ENSHGLG00000008277	ENSHGLG00000036882	ARHGAP21 (ENSHGLG00000008443)	ENKUR (ENSHGLG00000005349)	ENSHGLG00000004916	ENSHGLG00000045437	ENSHGLG00000044566	ENSHGLG00000047037	ENSHGLG00000044474	ENSHGLG00000034504	ENSHGLG00000040816	ENSHGLG00000004801	ENSHGLG00000048157
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.e.b #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836
Guinea pig	MODERN SPECIES	91			ARL5B (ENSCPOG00000005856)	MALRD1 (ENSCPOG00000033227)	PLXDC2 (ENSCPOG00000007300) #7	NEBL (ENSCPOG00000013320) #11	SKIDA1 (ENSCPOG00000014676) #12	MLLT10 (ENSCPOG00000008764) #13	DNAJC1 (ENSCPOG00000012322) #15	COMMD3 (ENSCPOG00000015426) #16	BMI1 (ENSCPOG00000040651) #17	ENSCPOG00000036027 #18	PIP4K2A (ENSCPOG00000007557) #19	ARMC3 (ENSCPOG00000013110) #20	MSRB2 (ENSCPOG00000007526) #21	PTF1A (ENSCPOG00000022828) #22	KIAA1217 (ENSCPOG00000003578)	IQSEC1 (ENSCPOG00000024771)	NUP210 (ENSCPOG00000009066)	HDAC11 (ENSCPOG00000006628)	FBLN2 (ENSCPOG00000006125)	WNT7A (ENSCPOG00000039003)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #11	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #15	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.e.b #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Degu	MODERN SPECIES	186														ARMC3 (ENSODEG00000002341) #20	MSRB2 (ENSODEG00000002295) #21	PTF1A (ENSODEG00000002261) #22	OTUD1 (ENSODEG00000002122)	ENSODEG00000003530	KIAA1217 (ENSODEG00000003130)	ARHGAP21 (ENSODEG00000003667)	PRTFDC1 (ENSODEG00000003390)	ENSODEG00000003316	ENSODEG00000003305	ENSODEG00000003243	ENKUR (ENSODEG00000003177)	ENSODEG00000004103	GPR158 (ENSODEG00000004004)	MYO3A (ENSODEG00000003447)	GAD2 (ENSODEG00000002488)	ENSODEG00000002425	ENSODEG00000002394
Long-tailed chinchilla	MODERN SPECIES	136	NSUN6 (ENSCLAG00000008092)	ARL5B (ENSCLAG00000007016)	MALRD1 (ENSCLAG00000005010)	PLXDC2 (ENSCLAG00000006978) #7	NEBL (ENSCLAG00000008890) #11	SKIDA1 (ENSCLAG00000006225) #12	MLLT10 (ENSCLAG00000011519) #13	DNAJC1 (ENSCLAG00000006988) #15	COMMD3 (ENSCLAG00000004946) #16	ENSCLAG00000013918 #17	ENSCLAG00000006642 #18	PIP4K2A (ENSCLAG00000007419) #19	ARMC3 (ENSCLAG00000006328) #20	MSRB2 (ENSCLAG00000005941) #21	ENSCLAG00000017726	PTF1A (ENSCLAG00000007259) #22	ENSCLAG00000006751	ENSCLAG00000007180	KIAA1217 (ENSCLAG00000015492)	ENSCLAG00000005271	ENKUR (ENSCLAG00000008963)	THNSL1 (ENSCLAG00000012933)	GPR158 (ENSCLAG00000011756)	MYO3A (ENSCLAG00000005793)	GAD2 (ENSCLAG00000006714)	APBB1IP (ENSCLAG00000007811)	ENSCLAG00000004989	PDSS1 (ENSCLAG00000011631)	ABI1 (ENSCLAG00000010653)	ACBD5 (ENSCLAG00000006783)	MASTL (ENSCLAG00000006587)