Rodentia_A	ANCESTRAL SPECIES	25	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #28	ENSGT00940000153866.A #29	ENSGT00940000161144 #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #28	ENSGT00940000153866.A #29	ENSGT00940000161144.b #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Eurasian red squirrel	MODERN SPECIES	3	PLXDC2 (ENSSVLG00005014950) #7	ENSSVLG00005014900 #8	NEBL (ENSSVLG00005014393) #9	ENSSVLG00005014360 #10	ENSSVLG00005014330 #11	SKIDA1 (ENSSVLG00005014278) #12	MLLT10 (ENSSVLG00005013802) #13	DNAJC1 (ENSSVLG00005013420) #14	ENSSVLG00005013284 #15	COMMD3 (ENSSVLG00005018569) #16	ENSSVLG00005018484 #17	SPAG6 (ENSSVLG00005018268) #18	PIP4K2A (ENSSVLG00005018202) #19	ARMC3 (ENSSVLG00005017564) #20	MSRB2 (ENSSVLG00005017505) #21	PTF1A (ENSSVLG00005017462) #22	ENSSVLG00005017420 #23	OTUD1 (ENSSVLG00005016919) #24	KIAA1217 (ENSSVLG00005015769) #25	ARHGAP21 (ENSSVLG00005014772) #26	ENSSVLG00005014651 #27	PRTFDC1 (ENSSVLG00005014583) #28	ENKUR (ENSSVLG00005014473) #29	THNSL1 (ENSSVLG00005014444) #30	ENSSVLG00005014402 #31	GPR158 (ENSSVLG00005014159) #32	ENSSVLG00005014103 #33	ENSSVLG00005014026 #34	GAD2 (ENSSVLG00005013824) #35	APBB1IP (ENSSVLG00005013617) #36	ENSSVLG00005013262 #37
Marmotini	ANCESTRAL SPECIES	21	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #28	ENSGT00940000153866.A #29	ENSGT00940000161144.b #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Marmotini_b	ANCESTRAL SPECIES	15	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00390000006922.m.a	ENSGT00940000161000 #22	ENSGT00390000003836	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #28	ENSGT00940000153866.A #29	ENSGT00940000161144.b #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350
Arctic ground squirrel	MODERN SPECIES	240													ARMC3 (ENSUPAG00010020821) #20	MSRB2 (ENSUPAG00010020854) #21	ENSUPAG00010020861	PTF1A (ENSUPAG00010020868) #22	OTUD1 (ENSUPAG00010020876) #24	KIAA1217 (ENSUPAG00010020897) #25	ARHGAP21 (ENSUPAG00010021811) #26	PRTFDC1 (ENSUPAG00010021815) #28	ENKUR (ENSUPAG00010021816) #29	THNSL1 (ENSUPAG00010021817) #30	GPR158 (ENSUPAG00010021820) #32	MYO3A (ENSUPAG00010021823)	GAD2 (ENSUPAG00010021871) #35
Squirrel	MODERN SPECIES	120	NSUN6 (ENSSTOG00000004317)	ARL5B (ENSSTOG00000027859)	MALRD1 (ENSSTOG00000034625)	PLXDC2 (ENSSTOG00000005048) #7	NEBL (ENSSTOG00000020521) #9	SKIDA1 (ENSSTOG00000005865) #12	MLLT10 (ENSSTOG00000016486) #13	DNAJC1 (ENSSTOG00000002303) #14	COMMD3 (ENSSTOG00000001638) #16	BMI1 (ENSSTOG00000001647) #17	SPAG6 (ENSSTOG00000001651) #18	PIP4K2A (ENSSTOG00000001661) #19	ARMC3 (ENSSTOG00000009417) #20	ENSSTOG00000013900 #21	ENSSTOG00000019871	PTF1A (ENSSTOG00000022679) #22	ENSSTOG00000010976	EIF4E (ENSSTOG00000002230)	METAP1 (ENSSTOG00000006210)	ADH5 (ENSSTOG00000006233)	ADH4 (ENSSTOG00000029406)	ENSSTOG00000026896	ENSSTOG00000019811	ADH7 (ENSSTOG00000006815)	C4orf17 (ENSSTOG00000013616)	TRMT10A (ENSSTOG00000005064)	MTTP (ENSSTOG00000006428)	C4orf54 (ENSSTOG00000026836)	DAPP1 (ENSSTOG00000010934)	LAMTOR3 (ENSSTOG00000010944)	DNAJB14 (ENSSTOG00000021338)
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000153866.A #29	ENSGT00940000161144 #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000035788	ENSHGLG00000006963 #9	SKIDA1 (ENSHGLG00000005858) #12	ENSHGLG00000043040	MLLT10 (ENSHGLG00000004757) #13	DNAJC1 (ENSHGLG00000004425) #14	ENSHGLG00000044999	ENSHGLG00000036320	ENSHGLG00000050921	ENSHGLG00000004324 #16	BMI1 (ENSHGLG00000032421) #17	ENSHGLG00000047021	PIP4K2A (ENSHGLG00000041790) #19	ARMC3 (ENSHGLG00000010508) #20	MSRB2 (ENSHGLG00000009558) #21	ENSHGLG00000013293 #22	ENSHGLG00000038637	ENSHGLG00000011626 #16	ENSHGLG00000008277 #25	ENSHGLG00000036882	ARHGAP21 (ENSHGLG00000008443) #26	ENKUR (ENSHGLG00000005349) #29	ENSHGLG00000004916 #30	ENSHGLG00000045437	ENSHGLG00000044566	ENSHGLG00000047037	ENSHGLG00000044474	ENSHGLG00000034504	ENSHGLG00000040816	ENSHGLG00000004801 #32	ENSHGLG00000048157 #34
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.e.b #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000153866.A #29	ENSGT00940000161144 #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836
Guinea pig	MODERN SPECIES	91			ARL5B (ENSCPOG00000005856)	MALRD1 (ENSCPOG00000033227)	PLXDC2 (ENSCPOG00000007300) #7	NEBL (ENSCPOG00000013320) #9	SKIDA1 (ENSCPOG00000014676) #12	MLLT10 (ENSCPOG00000008764) #13	DNAJC1 (ENSCPOG00000012322) #14	COMMD3 (ENSCPOG00000015426) #16	BMI1 (ENSCPOG00000040651) #17	ENSCPOG00000036027 #18	PIP4K2A (ENSCPOG00000007557) #19	ARMC3 (ENSCPOG00000013110) #20	MSRB2 (ENSCPOG00000007526) #21	PTF1A (ENSCPOG00000022828) #22	KIAA1217 (ENSCPOG00000003578) #25	IQSEC1 (ENSCPOG00000024771)	NUP210 (ENSCPOG00000009066)	HDAC11 (ENSCPOG00000006628)	FBLN2 (ENSCPOG00000006125)	WNT7A (ENSCPOG00000039003)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00950000182837.a.b.a	ENSGT00940000155370	ENSGT00940000157567	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099.e.b #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #28	ENSGT00940000153866.A #29	ENSGT00940000161144 #30	ENSGT00940000155918 #32	ENSGT00940000155939	ENSGT00940000157951 #35	ENSGT00940000156105 #36	ENSGT00390000005508.b #37	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002
Degu	MODERN SPECIES	186														ARMC3 (ENSODEG00000002341) #20	MSRB2 (ENSODEG00000002295) #21	PTF1A (ENSODEG00000002261) #22	OTUD1 (ENSODEG00000002122) #24	ENSODEG00000003530	KIAA1217 (ENSODEG00000003130) #25	ARHGAP21 (ENSODEG00000003667) #26	PRTFDC1 (ENSODEG00000003390) #28	ENSODEG00000003316	ENSODEG00000003305	ENSODEG00000003243	ENKUR (ENSODEG00000003177) #29	ENSODEG00000004103	GPR158 (ENSODEG00000004004) #32	MYO3A (ENSODEG00000003447)	GAD2 (ENSODEG00000002488) #35	ENSODEG00000002425	ENSODEG00000002394
Long-tailed chinchilla	MODERN SPECIES	136	NSUN6 (ENSCLAG00000008092)	ARL5B (ENSCLAG00000007016)	MALRD1 (ENSCLAG00000005010)	PLXDC2 (ENSCLAG00000006978) #7	NEBL (ENSCLAG00000008890) #9	SKIDA1 (ENSCLAG00000006225) #12	MLLT10 (ENSCLAG00000011519) #13	DNAJC1 (ENSCLAG00000006988) #14	COMMD3 (ENSCLAG00000004946) #16	ENSCLAG00000013918 #17	ENSCLAG00000006642 #18	PIP4K2A (ENSCLAG00000007419) #19	ARMC3 (ENSCLAG00000006328) #20	MSRB2 (ENSCLAG00000005941) #21	ENSCLAG00000017726	PTF1A (ENSCLAG00000007259) #22	ENSCLAG00000006751	ENSCLAG00000007180	KIAA1217 (ENSCLAG00000015492) #25	ENSCLAG00000005271 #26	ENKUR (ENSCLAG00000008963) #29	THNSL1 (ENSCLAG00000012933) #30	GPR158 (ENSCLAG00000011756) #32	MYO3A (ENSCLAG00000005793)	GAD2 (ENSCLAG00000006714) #35	APBB1IP (ENSCLAG00000007811) #36	ENSCLAG00000004989 #37	PDSS1 (ENSCLAG00000011631)	ABI1 (ENSCLAG00000010653)	ACBD5 (ENSCLAG00000006783)	MASTL (ENSCLAG00000006587)