Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000154775.c.b	ENSGT00940000156390 #9	ENSGT00940000172425 #11	ENSGT00410000028443	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #27	ENSGT00940000153866.A #28	ENSGT00940000161144 #29	ENSGT00940000155918 #30	ENSGT00940000155939 #32	ENSGT00940000157951 #33	ENSGT01090000260098.B	ENSGT00940000161191.A #34	ENSGT00530000063808.b #35	ENSGT00390000007134	ENSGT00390000011492
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000157567	ENSGT00940000165398	ENSGT00940000158809	ENSGT00440000033408.a #7	ENSGT00940000154775.c.b	ENSGT00940000156390 #9	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #27	ENSGT00940000153866.A #28	ENSGT00940000161144 #29	ENSGT00940000155918 #30	ENSGT00940000154431.e.a.a.a.a.a.a #31	ENSGT00940000155939 #32	ENSGT00940000157951 #33	ENSGT00940000161191.A #34	ENSGT00530000063808.b #35	ENSGT00390000007134	ENSGT00390000011492
Rambouillet Sheep	MODERN SPECIES	4	PLXDC2 (ENSOARG00020023004) #7	ENSOARG00020023295 #8	NEBL (ENSOARG00020023328) #9	ENSOARG00020023735 #10	ENSOARG00020023745 #11	SKIDA1 (ENSOARG00020023795) #12	MLLT10 (ENSOARG00020023844) #13	DNAJC1 (ENSOARG00020024307) #14	ENSOARG00020024323 #15	COMMD3 (ENSOARG00020024334) #16	BMI1 (ENSOARG00020024353) #17	SPAG6 (ENSOARG00020024405) #18	PIP4K2A (ENSOARG00020024466) #19	ARMC3 (ENSOARG00020024507) #20	MSRB2 (ENSOARG00020024574) #21	PTF1A (ENSOARG00020024582) #22	ENSOARG00020024601 #23	OTUD1 (ENSOARG00020024691) #24	KIAA1217 (ENSOARG00020024750) #25	ARHGAP21 (ENSOARG00020025002) #26	PRTFDC1 (ENSOARG00020025193) #27	ENKUR (ENSOARG00020025225) #28	THNSL1 (ENSOARG00020025238) #29	GPR158 (ENSOARG00020025256) #30	ENSOARG00020025314 #31	MYO3A (ENSOARG00020025333) #32	GAD2 (ENSOARG00020025435) #33	FZD8 (ENSOARG00020025454) #34	OPTN (ENSOARG00020003222) #35	PHYH (ENSOARG00020003287) #36	SEPHS1 (ENSOARG00020003364) #37
Goat	MODERN SPECIES	4	MALRD1 (ENSCHIG00000021485)	PLXDC2 (ENSCHIG00000023670) #7	ENSCHIG00000023193	NEBL (ENSCHIG00000023751) #9	SKIDA1 (ENSCHIG00000020595) #12	MLLT10 (ENSCHIG00000010933) #13	DNAJC1 (ENSCHIG00000008531) #14	ENSCHIG00000010411	COMMD3 (ENSCHIG00000017616) #16	BMI1 (ENSCHIG00000016716) #17	SPAG6 (ENSCHIG00000025023) #18	PIP4K2A (ENSCHIG00000022526) #19	ENSCHIG00000007754	ARMC3 (ENSCHIG00000023741) #20	MSRB2 (ENSCHIG00000014549) #21	PTF1A (ENSCHIG00000024165) #22	C10orf67 (ENSCHIG00000014515) #23	OTUD1 (ENSCHIG00000011814) #24	KIAA1217 (ENSCHIG00000022589) #25	ARHGAP21 (ENSCHIG00000018776) #26	PRTFDC1 (ENSCHIG00000019326) #27	ENKUR (ENSCHIG00000009363) #28	GPR158 (ENSCHIG00000025773) #30	ENSCHIG00000013726	ENSCHIG00000011148 #31	MYO3A (ENSCHIG00000015900) #32	GAD2 (ENSCHIG00000021003) #33	FZD8 (ENSCHIG00000026810) #34	OPTN (ENSCHIG00000017855) #35	MCM10 (ENSCHIG00000021952)	UCMA (ENSCHIG00000025422)
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000156390 #9	ENSGT00940000154775.c.b	ENSGT00940000172425 #11	ENSGT00940000170401.d	ENSGT00410000028443	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000009819.a.b.a.a.b.b.i.b	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000162225 #27	ENSGT00940000153866.A #28	ENSGT00940000161144 #29	ENSGT00940000155918.g #30	ENSGT00940000155939 #32	ENSGT00940000157951 #33	ENSGT01090000260098.B	ENSGT00940000161191.A #34	ENSGT00530000063808.b #35	ENSGT00390000007134	ENSGT00390000011492
Bos	ANCESTRAL SPECIES	22	ENSGT00940000156390 #9	ENSGT00940000154775.c.b	ENSGT00940000172425 #11	ENSGT00940000170401.d	ENSGT00410000028443	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000009819.a.b.a.a.b.b.i.b	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000153866.A #28	ENSGT00940000161144 #29	ENSGT00940000155918.g #30	ENSGT00940000155939 #32	ENSGT00940000157951 #33	ENSGT01090000260098.B	ENSGT00940000161191.A #34	ENSGT00530000063808.b #35	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h ##36
Bos_b	ANCESTRAL SPECIES	4	ENSGT00960000190920	ENSGT00940000156390 #9	ENSGT00940000154775.c.b	ENSGT00940000172425 #11	ENSGT00940000170401.d	ENSGT00410000028443	ENSGT00940000153451.a.b #12	ENSGT00940000157711 #13	ENSGT00940000156678 #14	ENSGT00390000015971 #16	ENSGT00940000156042 #17	ENSGT00900000141099 #18	ENSGT00940000156508 #19	ENSGT00940000157476 #20	ENSGT00940000161673 #21	ENSGT00940000161000 #22	ENSGT00390000003836 #23	ENSGT00510000049635 #24	ENSGT00940000156098 #25	ENSGT00940000155406 #26	ENSGT00940000153866.A #28	ENSGT00940000161144 #29	ENSGT00940000155918.g #30	ENSGT00940000155939 #32	ENSGT00940000157951 #33	ENSGT01090000260098.B	ENSGT00940000161191.A #34	ENSGT00530000063808.b #35	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h ##36
Cow	MODERN SPECIES	4	ENSBTAG00000048971	ENSBTAG00000003937	ENSBTAG00000050131	ENSBTAG00000050686	SKIDA1 (ENSBTAG00000044047) #12	MLLT10 (ENSBTAG00000044074) #13	DNAJC1 (ENSBTAG00000033315) #14	ENSBTAG00000025968	ENSBTAG00000051361	COMMD3 (ENSBTAG00000003589) #16	BMI1 (ENSBTAG00000015584) #17	SPAG6 (ENSBTAG00000033291) #18	PIP4K2A (ENSBTAG00000018033) #19	ARMC3 (ENSBTAG00000020929) #20	MSRB2 (ENSBTAG00000044112) #21	PTF1A (ENSBTAG00000047315) #22	OTUD1 (ENSBTAG00000047752) #24	KIAA1217 (ENSBTAG00000018395) #25	ARHGAP21 (ENSBTAG00000021857) #26	ENKUR (ENSBTAG00000015569) #28	THNSL1 (ENSBTAG00000009117) #29	GPR158 (ENSBTAG00000023920) #30	MYO3A (ENSBTAG00000002123) #32	GAD2 (ENSBTAG00000008056) #33	GJD4 (ENSBTAG00000003640)	FZD8 (ENSBTAG00000052989) #34	OPTN (ENSBTAG00000016401) #35	MCM10 (ENSBTAG00000016406)	UCMA (ENSBTAG00000054631)	ENSBTAG00000047869 ##36	PHYH (ENSBTAG00000007700) #36
Hybrid Bos Indicus	MODERN SPECIES	4	ENSBIXG00005021529	PLXDC2 (ENSBIXG00005021627) #7	ENSBIXG00005021704	ENSBIXG00005021732 #11	NEBL (ENSBIXG00005021861) #9	ENSBIXG00005021898	SKIDA1 (ENSBIXG00005021929) #12	MLLT10 (ENSBIXG00005022071) #13	DNAJC1 (ENSBIXG00005022133) #14	BMI1 (ENSBIXG00005007224) #17	SPAG6 (ENSBIXG00005022314) #18	ENSBIXG00005022342	PIP4K2A (ENSBIXG00005022377) #19	ARMC3 (ENSBIXG00005022496) #20	MSRB2 (ENSBIXG00005022544) #21	PTF1A (ENSBIXG00005022569) #22	ENSBIXG00005022633 #23	OTUD1 (ENSBIXG00005003874) #24	ENSBIXG00005022670	KIAA1217 (ENSBIXG00005006893) #25	ARHGAP21 (ENSBIXG00005023435) #26	ENSBIXG00005007388	ENSBIXG00005006004	ENKUR (ENSBIXG00005023626) #28	THNSL1 (ENSBIXG00005023665) #29	GPR158 (ENSBIXG00005023699) #30	MYO3A (ENSBIXG00005023826) #32	GAD2 (ENSBIXG00005004092) #33	FZD8 (ENSBIXG00005005561) #34	ENSBIXG00005023947	OPTN (ENSBIXG00005024077) #35
American bison	MODERN SPECIES	3321	ENSBBBG00000014820	NEBL (ENSBBBG00000014814) #9	ENSBBBG00000014782 #11	ENSBBBG00000003590	ENSBBBG00000014776	SKIDA1 (ENSBBBG00000014768) #12	MLLT10 (ENSBBBG00000014752) #13	DNAJC1 (ENSBBBG00000014621) #14	ENSBBBG00000014606	COMMD3 (ENSBBBG00000014594) #16	BMI1 (ENSBBBG00000014582) #17	SPAG6 (ENSBBBG00000007604) #18	PIP4K2A (ENSBBBG00000003407) #19	ARMC3 (ENSBBBG00000003388) #20	MSRB2 (ENSBBBG00000014479) #21	PTF1A (ENSBBBG00000014471) #22	KIAA1217 (ENSBBBG00000014434) #25	ARHGAP21 (ENSBBBG00000003208) #26	PRTFDC1 (ENSBBBG00000014140) #27	ENKUR (ENSBBBG00000014121) #28	THNSL1 (ENSBBBG00000003174) #29	GPR158 (ENSBBBG00000008747) #30	ENSBBBG00000014091	GAD2 (ENSBBBG00000014080) #33	ENSBBBG00000003133 #34	OPTN (ENSBBBG00000014045) #35	MCM10 (ENSBBBG00000003086)	UCMA (ENSBBBG00000008745)	ENSBBBG00000013955 ##36	ENSBBBG00000003045 #36	SEPHS1 (ENSBBBG00000013939) #37