Rodentia_A ANCESTRAL SPECIES 14 ENSGT00940000155135 ENSGT00940000158503 ENSGT00940000162575 ENSGT00390000012177 ENSGT00940000158121 ENSGT00390000004352 ENSGT00940000163478 ENSGT00940000153094 ENSGT00940000154279.e.b.b.b ENSGT00940000153770.s.b.a.a ENSGT00940000154279.e.b.b.a ENSGT00940000162515 #9 ENSGT00940000154279.e.b.a ENSGT00940000153924.m.a ENSGT00940000154869.b.b #7 ENSGT00940000161868 #22 ENSGT00940000161976 #23 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.a #28 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.kb.b.b.b ##24 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00940000162631 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 Sciuridae ANCESTRAL SPECIES 44 ENSGT00940000153048.B.d.c.b ##11 ENSGT00940000162421.b.b.b #12 ENSGT00940000154039.a.a.a.j #10 ENSGT00940000153048.B.d.c.a.b.b.a #17 ENSGT00940000153048.B.d.c.a.a #11 ENSGT00940000154413.e #15 ENSGT00940000154279.e.a.d ENSGT00940000154413.f ##15 ENSGT00940000161868 #22 ENSGT00940000161976 #23 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.a #28 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.kb.b.b.b ##24 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00940000162631 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 Marmotini ANCESTRAL SPECIES 56 ENSGT00940000161868 #22 ENSGT00940000161976 #23 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.a #28 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.kb.b.b.b ##24 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00940000162631 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 Alpin marmot MODERN SPECIES 63 ENSMMMG00000003067 #7 ENSMMMG00000003055 #8 ENSMMMG00000003054 #9 ENSMMMG00000003043 #10 ENSMMMG00000003030 #11 ENSMMMG00000003018 #12 ENSMMMG00000003009 #13 ENSMMMG00000003005 #14 ENSMMMG00000002995 #15 ENSMMMG00000002977 #16 ENSMMMG00000002972 #17 ENSMMMG00000002964 #18 ENSMMMG00000002956 #19 ENSMMMG00000002942 #20 ENSMMMG00000002924 #21 PAX8 (ENSMMMG00000002865) #22 PSD4 (ENSMMMG00000002787) #23 IL1RN (ENSMMMG00000002728) #24 IL1F10 (ENSMMMG00000002716) #25 IL36RN (ENSMMMG00000002694) #26 ENSMMMG00000002672 #27 IL36A (ENSMMMG00000002651) #28 ENSMMMG00000002626 #29 IL1B (ENSMMMG00000002615) #30 IL1A (ENSMMMG00000002589) #31 CKAP2L (ENSMMMG00000002568) #32 SLC20A1 (ENSMMMG00000002525) #33 ENSMMMG00000002509 #34 CHCHD5 (ENSMMMG00000002505) #35 POLR1B (ENSMMMG00000002463) #36 TTL (ENSMMMG00000002449) #37 Marmotini_b ANCESTRAL SPECIES 174 ENSGT00940000161868 #22 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.a #28 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.kb.b.b.b ##24 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00940000162631 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 ENSGT00940000161907 #37 Squirrel MODERN SPECIES 383 PAX8 (ENSSTOG00000024664) #22 ENSSTOG00000014455 IL1RN (ENSSTOG00000014450) #24 IL1F10 (ENSSTOG00000014447) #25 IL36RN (ENSSTOG00000014442) #26 ENSSTOG00000014564 #27 IL36A (ENSSTOG00000001732) #28 IL36G (ENSSTOG00000001727) #29 ENSSTOG00000027018 ##24 IL37 (ENSSTOG00000008646) ##24 IL1B (ENSSTOG00000002292) #30 IL1A (ENSSTOG00000002285) #31 CKAP2L (ENSSTOG00000025468) #32 SLC20A1 (ENSSTOG00000008202) #33 CHCHD5 (ENSSTOG00000008190) #35 POLR1B (ENSSTOG00000008160) #36 Eurasian red squirrel MODERN SPECIES 5 ENSSVLG00005021980 ENSSVLG00005022012 ENSSVLG00005022087 ##11 ENSSVLG00005022131 #12 ENSSVLG00005022162 ENSSVLG00005022225 #17 ENSSVLG00005022258 ##9 ENSSVLG00005022282 ##9 ENSSVLG00005022318 ##12 ENSSVLG00005022349 ENSSVLG00005022375 ENSSVLG00005022390 ENSSVLG00005005354 #15 ENSSVLG00005005425 ENSSVLG00005005443 ##15 PAX8 (ENSSVLG00005005544) #22 ENSSVLG00005005771 #23 IL1RN (ENSSVLG00005005840) #24 IL1F10 (ENSSVLG00005005916) #25 IL36RN (ENSSVLG00005005954) #26 ENSSVLG00005005994 #27 IL36A (ENSSVLG00005006035) #28 IL36G (ENSSVLG00005006084) #29 IL37 (ENSSVLG00005006202) ##24 IL1B (ENSSVLG00005006237) #30 ENSSVLG00005006289 #31 ENSSVLG00005006322 #31 CKAP2L (ENSSVLG00005006391) #32 SLC20A1 (ENSSVLG00005006537) #33 CHCHD5 (ENSSVLG00005006621) #35 POLR1B (ENSSVLG00005006694) #36 Hystricomorpha ANCESTRAL SPECIES 8 ENSGT00940000155135.j.b ENSGT00940000155135.j.a ENSGT00940000158503 ENSGT00940000162575 ENSGT00390000012177 ENSGT00940000158121 ENSGT00390000004352 ENSGT00840000130051 #8 ENSGT00940000154413.h #15 ENSGT00940000162421.a.a.b ##12 ENSGT00940000153048.A.b ##11 ENSGT00940000153770.s.b.a.a ENSGT00940000154279.e.b.b.a ENSGT00940000153094.i.b ENSGT00940000154869.b.b #7 ENSGT00940000161868 #22 ENSGT00940000161976.i #23 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.a #28 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.kb.b.b.b ##24 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 ENSGT00940000161907 #37 Hystricomorpha_a ANCESTRAL SPECIES 52 ENSGT00940000161868 #22 ENSGT00940000161976.i #23 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.a #28 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.kb.b.b.b ##24 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 ENSGT00940000161907 #37 Guinea pig MODERN SPECIES 73 ENSCPOG00000010975 FGFRL1 (ENSCPOG00000008031) IDUA (ENSCPOG00000013790) SLC26A1 (ENSCPOG00000013797) DGKQ (ENSCPOG00000002313) TMEM175 (ENSCPOG00000026846) GAK (ENSCPOG00000013147) CPLX1 (ENSCPOG00000039819) PCGF3 (ENSCPOG00000034430) SLC49A3 (ENSCPOG00000007487) ENSCPOG00000008678 PDE6B (ENSCPOG00000022569) PIGG (ENSCPOG00000005447) ENSCPOG00000036063 ENSCPOG00000035445 PAX8 (ENSCPOG00000012011) #22 PSD4 (ENSCPOG00000011999) #23 IL1RN (ENSCPOG00000038324) #24 IL1F10 (ENSCPOG00000008348) #25 IL36RN (ENSCPOG00000008529) #26 ENSCPOG00000034366 #27 ENSCPOG00000039065 #27 ENSCPOG00000035813 #28 ENSCPOG00000039744 #29 ENSCPOG00000023405 ##24 ENSCPOG00000026714 ##24 ENSCPOG00000036528 #29 ENSCPOG00000040372 #28 ENSCPOG00000037328 #27 IL1B (ENSCPOG00000001975) #30 IL1A (ENSCPOG00000026158) #31 Hystricomorpha_b ANCESTRAL SPECIES 59 ENSGT00940000161868 #22 ENSGT00940000161976.i #23 ENSGT00950000182943.kb.b.a.b.b.a #24 ENSGT00950000182943.kb.b.a.b.b.b #25 ENSGT00950000182943.kb.b.a.b.a #26 ENSGT00950000182943.kb.b.b.a.b #27 ENSGT00950000182943.kb.b.b.a.a.b #29 ENSGT00950000182943.jb #30 ENSGT00390000013353 #31 ENSGT00530000063691.a #32 ENSGT00390000014879.c.a #33 ENSGT00390000007919 #35 ENSGT00950000183132.B #36 ENSGT00940000161907 #37 ENSGT01030000234543.E ENSGT00940000157396 Degu MODERN SPECIES 93 ENSODEG00000007829 ##12 ENSODEG00000019210 ENSODEG00000005578 ENSODEG00000006398 ##11 PAX8 (ENSODEG00000005692) #22 PSD4 (ENSODEG00000005583) #23 IL1RN (ENSODEG00000006153) #24 IL1F10 (ENSODEG00000005739) #25 IL36RN (ENSODEG00000006210) #26 ENSODEG00000007018 IL36A (ENSODEG00000005630) #28 ENSODEG00000019269 IL1B (ENSODEG00000006687) #30 CKAP2L (ENSODEG00000005587) #32 SLC20A1 (ENSODEG00000006024) #33 CHCHD5 (ENSODEG00000005670) #35 POLR1B (ENSODEG00000005501) #36 TTL (ENSODEG00000007061) #37 ENSODEG00000007009 ZC3H6 (ENSODEG00000009099) Long-tailed chinchilla MODERN SPECIES 177 ENSCLAG00000005318 ##12 ENSCLAG00000005407 ENSCLAG00000003098 #12 ENSCLAG00000003413 ENSCLAG00000003934 ##12 ENSCLAG00000004101 ##12 ENSCLAG00000004289 ##12 ENSCLAG00000004473 ENSCLAG00000006465 ENSCLAG00000003750 #15 ENSCLAG00000007227 ##12 ENSCLAG00000009359 ##12 ENSCLAG00000009390 #15 ENSCLAG00000009569 ##11 ENSCLAG00000003355 PAX8 (ENSCLAG00000004013) #22 PSD4 (ENSCLAG00000004856) #23 IL1RN (ENSCLAG00000004988) #24 IL1F10 (ENSCLAG00000005905) #25 IL36RN (ENSCLAG00000003646) #26 ENSCLAG00000003697 #27 ENSCLAG00000003745 #27 ENSCLAG00000004006 #27 IL36G (ENSCLAG00000004281) #29 ENSCLAG00000017636 IL1B (ENSCLAG00000003778) #30 IL1A (ENSCLAG00000004178) #31 CKAP2L (ENSCLAG00000004664) #32 SLC20A1 (ENSCLAG00000005137) #33 CHCHD5 (ENSCLAG00000005483) #35 POLR1B (ENSCLAG00000004899) #36 Naked mole-rat female MODERN SPECIES 23 ENSHGLG00000037102 FEM1C (ENSHGLG00000043263) TICAM2 (ENSHGLG00000033848) TMED7 (ENSHGLG00000039198) CDO1 (ENSHGLG00000019411) ATG12 (ENSHGLG00000041482) ENSHGLG00000007878 ENSHGLG00000040438 LVRN (ENSHGLG00000009169) ARL14EPL (ENSHGLG00000033293) COMMD10 (ENSHGLG00000035743) ENSHGLG00000035376 SEMA6A (ENSHGLG00000014606) ENSHGLG00000006231 #15 ENSHGLG00000041113 #7 PAX8 (ENSHGLG00000015233) #22 ENSHGLG00000040841 ENSHGLG00000038423 #23 ENSHGLG00000016761 #23 IL1RN (ENSHGLG00000048066) #24 IL1F10 (ENSHGLG00000049458) #25 IL36RN (ENSHGLG00000007845) #26 IL36B (ENSHGLG00000006883) #27 ENSHGLG00000042739 IL36A (ENSHGLG00000005025) #28 IL36G (ENSHGLG00000040519) #29 ENSHGLG00000008467 ENSHGLG00000034136 ##24 ENSHGLG00000007464 ##24 IL1B (ENSHGLG00000006083) #30 IL1A (ENSHGLG00000047729) #31