Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094	ENSGT00940000154279.e.b.b.b	ENSGT00940000153770.s.b.a.a	ENSGT00940000154279.e.b.b.a	ENSGT00940000162515	ENSGT00940000154279.e.b.a	ENSGT00940000153924.m.a	ENSGT00940000154869.b.b	ENSGT00940000161868 #22	ENSGT00940000161976 #23	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.a #34	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.kb.b.b.b #32	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000155135.j.b	ENSGT00940000155135.j.a	ENSGT00940000158503	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00840000130051	ENSGT00940000154413.h	ENSGT00940000162421.a.a.b	ENSGT00940000153048.A.b	ENSGT00940000153770.s.b.a.a	ENSGT00940000154279.e.b.b.a	ENSGT00940000153094.i.b	ENSGT00940000154869.b.b	ENSGT00940000161868 #22	ENSGT00940000161976.i #23	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.a #34	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.kb.b.b.b #32	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B	ENSGT00940000161907
Hystricomorpha_a	ANCESTRAL SPECIES	52																ENSGT00940000161868 #22	ENSGT00940000161976.i #23	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.a #34	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.kb.b.b.b #32	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B	ENSGT00940000161907
Guinea pig	MODERN SPECIES	73	ENSCPOG00000010975 #7	FGFRL1 (ENSCPOG00000008031) #8	IDUA (ENSCPOG00000013790) #9	SLC26A1 (ENSCPOG00000013797) #10	DGKQ (ENSCPOG00000002313) #11	TMEM175 (ENSCPOG00000026846) #12	GAK (ENSCPOG00000013147) #13	CPLX1 (ENSCPOG00000039819) #14	PCGF3 (ENSCPOG00000034430) #15	SLC49A3 (ENSCPOG00000007487) #16	ENSCPOG00000008678 #17	PDE6B (ENSCPOG00000022569) #18	PIGG (ENSCPOG00000005447) #19	ENSCPOG00000036063 #20	ENSCPOG00000035445 #21	PAX8 (ENSCPOG00000012011) #22	PSD4 (ENSCPOG00000011999) #23	IL1RN (ENSCPOG00000038324) #24	IL1F10 (ENSCPOG00000008348) #25	IL36RN (ENSCPOG00000008529) #26	ENSCPOG00000034366 #27	ENSCPOG00000039065 #28	ENSCPOG00000035813 #29	ENSCPOG00000039744 #30	ENSCPOG00000023405 #31	ENSCPOG00000026714 #32	ENSCPOG00000036528 #33	ENSCPOG00000040372 #34	ENSCPOG00000037328 #35	IL1B (ENSCPOG00000001975) #36	IL1A (ENSCPOG00000026158) #37
Hystricomorpha_b	ANCESTRAL SPECIES	59																ENSGT00940000161868 #22	ENSGT00940000161976.i #23	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B	ENSGT00940000161907	ENSGT01030000234543.E	ENSGT00940000157396
Degu	MODERN SPECIES	93												ENSODEG00000007829	ENSODEG00000019210	ENSODEG00000005578	ENSODEG00000006398	PAX8 (ENSODEG00000005692) #22	PSD4 (ENSODEG00000005583) #23	IL1RN (ENSODEG00000006153) #24	IL1F10 (ENSODEG00000005739) #25	IL36RN (ENSODEG00000006210) #26	ENSODEG00000007018	IL36A (ENSODEG00000005630) #34	ENSODEG00000019269	IL1B (ENSODEG00000006687) #36	CKAP2L (ENSODEG00000005587)	SLC20A1 (ENSODEG00000006024)	CHCHD5 (ENSODEG00000005670)	POLR1B (ENSODEG00000005501)	TTL (ENSODEG00000007061)	ENSODEG00000007009	ZC3H6 (ENSODEG00000009099)
Long-tailed chinchilla	MODERN SPECIES	177	ENSCLAG00000005318	ENSCLAG00000005407	ENSCLAG00000003098	ENSCLAG00000003413	ENSCLAG00000003934	ENSCLAG00000004101	ENSCLAG00000004289	ENSCLAG00000004473	ENSCLAG00000006465	ENSCLAG00000003750	ENSCLAG00000007227	ENSCLAG00000009359	ENSCLAG00000009390	ENSCLAG00000009569	ENSCLAG00000003355	PAX8 (ENSCLAG00000004013) #22	PSD4 (ENSCLAG00000004856) #23	IL1RN (ENSCLAG00000004988) #24	IL1F10 (ENSCLAG00000005905) #25	IL36RN (ENSCLAG00000003646) #26	ENSCLAG00000003697 #35	ENSCLAG00000003745 #35	ENSCLAG00000004006 #35	IL36G (ENSCLAG00000004281) #33	ENSCLAG00000017636	IL1B (ENSCLAG00000003778) #36	IL1A (ENSCLAG00000004178) #37	CKAP2L (ENSCLAG00000004664)	SLC20A1 (ENSCLAG00000005137)	CHCHD5 (ENSCLAG00000005483)	POLR1B (ENSCLAG00000004899)
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000037102	FEM1C (ENSHGLG00000043263)	TICAM2 (ENSHGLG00000033848)	TMED7 (ENSHGLG00000039198)	CDO1 (ENSHGLG00000019411)	ATG12 (ENSHGLG00000041482)	ENSHGLG00000007878	ENSHGLG00000040438	LVRN (ENSHGLG00000009169)	ARL14EPL (ENSHGLG00000033293)	COMMD10 (ENSHGLG00000035743)	ENSHGLG00000035376	SEMA6A (ENSHGLG00000014606)	ENSHGLG00000006231	ENSHGLG00000041113	PAX8 (ENSHGLG00000015233) #22	ENSHGLG00000040841	ENSHGLG00000038423 ##23	ENSHGLG00000016761 #23	IL1RN (ENSHGLG00000048066) #24	IL1F10 (ENSHGLG00000049458) #25	IL36RN (ENSHGLG00000007845) #26	IL36B (ENSHGLG00000006883) #35	ENSHGLG00000042739	IL36A (ENSHGLG00000005025) #34	IL36G (ENSHGLG00000040519) #33	ENSHGLG00000008467	ENSHGLG00000034136 #32	ENSHGLG00000007464 #32	IL1B (ENSHGLG00000006083) #36	IL1A (ENSHGLG00000047729) #37
Sciuridae	ANCESTRAL SPECIES	44								ENSGT00940000153048.B.d.c.b	ENSGT00940000162421.b.b.b	ENSGT00940000154039.a.a.a.j	ENSGT00940000153048.B.d.c.a.b.b.a	ENSGT00940000153048.B.d.c.a.a	ENSGT00940000154413.e	ENSGT00940000154279.e.a.d	ENSGT00940000154413.f	ENSGT00940000161868 #22	ENSGT00940000161976 #23	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.a #34	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.kb.b.b.b #32	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B
Marmotini	ANCESTRAL SPECIES	56																ENSGT00940000161868 #22	ENSGT00940000161976 #23	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.a #34	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.kb.b.b.b #32	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B
Alpin marmot	MODERN SPECIES	63	ENSMMMG00000003067	ENSMMMG00000003055	ENSMMMG00000003054	ENSMMMG00000003043	ENSMMMG00000003030	ENSMMMG00000003018	ENSMMMG00000003009	ENSMMMG00000003005	ENSMMMG00000002995	ENSMMMG00000002977	ENSMMMG00000002972	ENSMMMG00000002964	ENSMMMG00000002956	ENSMMMG00000002942	ENSMMMG00000002924	PAX8 (ENSMMMG00000002865) #22	PSD4 (ENSMMMG00000002787) #23	IL1RN (ENSMMMG00000002728) #24	IL1F10 (ENSMMMG00000002716) #25	IL36RN (ENSMMMG00000002694) #26	ENSMMMG00000002672 #35	IL36A (ENSMMMG00000002651) #34	ENSMMMG00000002626 #33	IL1B (ENSMMMG00000002615) #36	IL1A (ENSMMMG00000002589) #37	CKAP2L (ENSMMMG00000002568)	SLC20A1 (ENSMMMG00000002525)	ENSMMMG00000002509	CHCHD5 (ENSMMMG00000002505)	POLR1B (ENSMMMG00000002463)	TTL (ENSMMMG00000002449)
Marmotini_b	ANCESTRAL SPECIES	174																ENSGT00940000161868 #22	ENSGT00950000182943.kb.b.a.b.b.a #24	ENSGT00950000182943.kb.b.a.b.b.b #25	ENSGT00950000182943.kb.b.a.b.a #26	ENSGT00950000182943.kb.b.b.a.b #35	ENSGT00950000182943.kb.b.b.a.a.a #34	ENSGT00950000182943.kb.b.b.a.a.b #33	ENSGT00950000182943.kb.b.b.b #32	ENSGT00950000182943.jb #36	ENSGT00390000013353 #37	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00390000007919	ENSGT00950000183132.B	ENSGT00940000161907
Squirrel	MODERN SPECIES	383																PAX8 (ENSSTOG00000024664) #22	ENSSTOG00000014455	IL1RN (ENSSTOG00000014450) #24	IL1F10 (ENSSTOG00000014447) #25	IL36RN (ENSSTOG00000014442) #26	ENSSTOG00000014564 #35	IL36A (ENSSTOG00000001732) #34	IL36G (ENSSTOG00000001727) #33	ENSSTOG00000027018 #32	IL37 (ENSSTOG00000008646) #32	IL1B (ENSSTOG00000002292) #36	IL1A (ENSSTOG00000002285) #37	CKAP2L (ENSSTOG00000025468)	SLC20A1 (ENSSTOG00000008202)	CHCHD5 (ENSSTOG00000008190)	POLR1B (ENSSTOG00000008160)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005021980	ENSSVLG00005022012	ENSSVLG00005022087	ENSSVLG00005022131	ENSSVLG00005022162	ENSSVLG00005022225	ENSSVLG00005022258	ENSSVLG00005022282	ENSSVLG00005022318	ENSSVLG00005022349	ENSSVLG00005022375	ENSSVLG00005022390	ENSSVLG00005005354	ENSSVLG00005005425	ENSSVLG00005005443	PAX8 (ENSSVLG00005005544) #22	ENSSVLG00005005771 #23	IL1RN (ENSSVLG00005005840) #24	IL1F10 (ENSSVLG00005005916) #25	IL36RN (ENSSVLG00005005954) #26	ENSSVLG00005005994 #35	IL36A (ENSSVLG00005006035) #34	IL36G (ENSSVLG00005006084) #33	IL37 (ENSSVLG00005006202) #32	IL1B (ENSSVLG00005006237) #36	ENSSVLG00005006289 #37	ENSSVLG00005006322 #37	CKAP2L (ENSSVLG00005006391)	SLC20A1 (ENSSVLG00005006537)	CHCHD5 (ENSSVLG00005006621)	POLR1B (ENSSVLG00005006694)