Euteleostomi	ANCESTRAL SPECIES	61											ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00970000198076	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Sarcopterygii	ANCESTRAL SPECIES	88												ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00970000198076	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00390000007027	ENSGT00940000157721 #7	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301
Amniota	ANCESTRAL SPECIES	9	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Mammalia	ANCESTRAL SPECIES	5	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Theria	ANCESTRAL SPECIES	3	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Eutheria	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Artiodactyla	ANCESTRAL SPECIES		ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417.u.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417.u.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417.u.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Cetacea	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417.v #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243.c.a.a #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a.e #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000154277.a.b.b.m.b #24	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154169.A.l #34	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417.v #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243.c.a.a #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a.e #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000154277.a.b.b.m.b #24	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154169.A.l #34	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.k	ENSGT00730000111209
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417.v #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243.c.a.a #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a.e #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000154277.a.b.b.m.b #24	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154169.A.l #34	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.k	ENSGT00730000111209
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417.v #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00390000015470.m.a	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243.c.a.a #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a.e #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000154277.a.b.b.m.b #24	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154169.A.l #34	ENSGT00940000154568 #37	ENSGT00990000212760 #35	ENSGT00390000017639.b ##36	ENSGT00940000158755
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417.v #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00390000015470.m.a	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243.c.a.a #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a.e #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000154277.a.b.b.m.b #24	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154169.A.l #34	ENSGT00940000154568 #37	ENSGT00990000212760 #35	ENSGT00390000017639.b ##36	ENSGT00940000158755
Narwhal	MODERN SPECIES	304	MYSM1 (ENSMMNG00015022102) #7	JUN (ENSMMNG00015022101) #8	FGGY (ENSMMNG00015022099) #9	HOOK1 (ENSMMNG00015022098) #10	CYP2J2 (ENSMMNG00015022097) #11	ENSMMNG00015022096 #12	NFIA (ENSMMNG00015022095) #13	TM2D1 (ENSMMNG00015022092) #14	PATJ (ENSMMNG00015022091) #15	ENSMMNG00015022090 #16	KANK4 (ENSMMNG00015022089) #17	ENSMMNG00015022087 #18	ANGPTL3 (ENSMMNG00015022086) #19	DOCK7 (ENSMMNG00015022084) #20	ATG4C (ENSMMNG00015022082) #21	FOXD3 (ENSMMNG00015022081) #22	ALG6 (ENSMMNG00015022080) #23	ENSMMNG00015022076 #24	ITGB3BP (ENSMMNG00015022074) #25	EFCAB7 (ENSMMNG00015022073) #26	PGM1 (ENSMMNG00015022072) #27	ROR1 (ENSMMNG00015022071) #28	UBE2U (ENSMMNG00015022070) #29	CACHD1 (ENSMMNG00015022069) #30	RAVER2 (ENSMMNG00015022068) #31	JAK1 (ENSMMNG00015022067) #32	ENSMMNG00015022065 #33	ENSMMNG00015022064 #34	ENSMMNG00015022063 #35	ENSMMNG00015022062 #36	ENSMMNG00015022054 #37
Beluga whale	MODERN SPECIES	74	MYSM1 (ENSDLEG00000019577) #7	JUN (ENSDLEG00000019588) #8	FGGY (ENSDLEG00000019599) #9	HOOK1 (ENSDLEG00000019616) #10	CYP2J2 (ENSDLEG00000019634) #11	NFIA (ENSDLEG00000019647) #13	TM2D1 (ENSDLEG00000019664) #14	PATJ (ENSDLEG00000019785) #15	ENSDLEG00000020682	ENSDLEG00000020688 #16	KANK4 (ENSDLEG00000020692) #17	USP1 (ENSDLEG00000020714) #18	DOCK7 (ENSDLEG00000010129) #20	ANGPTL3 (ENSDLEG00000021249) #19	ATG4C (ENSDLEG00000021255) #21	FOXD3 (ENSDLEG00000021257) #22	ALG6 (ENSDLEG00000021260) #23	ITGB3BP (ENSDLEG00000021262) #25	ENSDLEG00000021263 #24	EFCAB7 (ENSDLEG00000021268) #26	PGM1 (ENSDLEG00000021272) #27	ROR1 (ENSDLEG00000021274) #28	UBE2U (ENSDLEG00000021278) #29	CACHD1 (ENSDLEG00000021280) #30	RAVER2 (ENSDLEG00000021287) #31	JAK1 (ENSDLEG00000021291) #32	ENSDLEG00000021294 #33	ENSDLEG00000021295 #34	ENSDLEG00000021299 #37	ENSDLEG00000021300 #35	ENSDLEG00000021302 ##36
Vaquita	MODERN SPECIES		FGGY (ENSPSNG00000001878) #9	HOOK1 (ENSPSNG00000001959) #10	CYP2J2 (ENSPSNG00000002001) #11	ENSPSNG00000002024 #12	NFIA (ENSPSNG00000002205) #13	ENSPSNG00000002380	TM2D1 (ENSPSNG00000002408) #14	PATJ (ENSPSNG00000002448) #15	ENSPSNG00000002480	ENSPSNG00000002492 #16	KANK4 (ENSPSNG00000002529) #17	USP1 (ENSPSNG00000002605) #18	DOCK7 (ENSPSNG00000002635) #20	ANGPTL3 (ENSPSNG00000002721) #19	ATG4C (ENSPSNG00000002761) #21	FOXD3 (ENSPSNG00000002801) #22	ALG6 (ENSPSNG00000002827) #23	ITGB3BP (ENSPSNG00000002857) #25	ENSPSNG00000002872	ENSPSNG00000002888 #24	EFCAB7 (ENSPSNG00000002909) #26	PGM1 (ENSPSNG00000002952) #27	ROR1 (ENSPSNG00000003007) #28	UBE2U (ENSPSNG00000003039) #29	CACHD1 (ENSPSNG00000003080) #30	RAVER2 (ENSPSNG00000003159) #31	JAK1 (ENSPSNG00000003215) #32	ENSPSNG00000003242	ENSPSNG00000003270 #34	ENSPSNG00000003289 #37	ENSPSNG00000003300 #35
Sperm whale	MODERN SPECIES	15	MYSM1 (ENSPCTG00005022773) #7	HOOK1 (ENSPCTG00005022771) #10	FGGY (ENSPCTG00005022765) #9	CYP2J2 (ENSPCTG00005022760) #11	ENSPCTG00005022759 #12	NFIA (ENSPCTG00005022749) #13	TM2D1 (ENSPCTG00005022746) #14	ENSPCTG00005022745	PATJ (ENSPCTG00005022726) #15	ENSPCTG00005022724 #16	KANK4 (ENSPCTG00005022722) #17	USP1 (ENSPCTG00005022719) #18	ANGPTL3 (ENSPCTG00005022717) #19	DOCK7 (ENSPCTG00005022710) #20	ENSPCTG00005022703 #21	FOXD3 (ENSPCTG00005022700) #22	ALG6 (ENSPCTG00005022695) #23	ENSPCTG00005022690	ENSPCTG00005022689 ##24	ITGB3BP (ENSPCTG00005022687) #25	EFCAB7 (ENSPCTG00005022682) #26	ROR1 (ENSPCTG00005022678) #28	UBE2U (ENSPCTG00005022676) #29	CACHD1 (ENSPCTG00005022667) #30	RAVER2 (ENSPCTG00005022653) #31	JAK1 (ENSPCTG00005022651) #32	ENSPCTG00005022639 #34	AK4 (ENSPCTG00005022622) #37	DNAJC6 (ENSPCTG00005022551)	LEPROT (ENSPCTG00005022488)	LEPR (ENSPCTG00005022108)
Blue whale	MODERN SPECIES		FGGY (ENSBMSG00010001218) #9	HOOK1 (ENSBMSG00010001303) #10	CYP2J2 (ENSBMSG00010001319) #11	ENSBMSG00010001338 #12	NFIA (ENSBMSG00010001455) #13	TM2D1 (ENSBMSG00010001753) #14	PATJ (ENSBMSG00010001826) #15	ENSBMSG00010002038 #16	KANK4 (ENSBMSG00010002062) #17	ENSBMSG00010002165	ENSBMSG00010002182 #18	DOCK7 (ENSBMSG00010002212) #20	ANGPTL3 (ENSBMSG00010002379) #19	ENSBMSG00010002413	ENSBMSG00010002428 #21	FOXD3 (ENSBMSG00010002458) #22	ALG6 (ENSBMSG00010002470) #23	ITGB3BP (ENSBMSG00010002488) #25	ENSBMSG00010002519 #24	EFCAB7 (ENSBMSG00010002542) #26	PGM1 (ENSBMSG00010002593) #27	ROR1 (ENSBMSG00010002655) #28	UBE2U (ENSBMSG00010002698) #29	CACHD1 (ENSBMSG00010002730) #30	RAVER2 (ENSBMSG00010002835) #31	JAK1 (ENSBMSG00010002874) #32	ENSBMSG00010003046 #33	ENSBMSG00010003053 #34	ENSBMSG00010003064 #37	ENSBMSG00010003088 #35	DNAJC6 (ENSBMSG00010003114)
Pecora	ANCESTRAL SPECIES	2	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417.u.a.b ##11	ENSGT00940000155417.u.a.a.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.j	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000155417.u.a.b.a.a.a ##11	ENSGT00940000155417.u.a.b.a.a.b ##11	ENSGT00940000155417.u.a.b.a.b ##11	ENSGT00940000155417.u.a.a.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.j	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000155417.u.a.b.a.a.a ##11	ENSGT00940000155417.u.a.b.a.a.b ##11	ENSGT00940000155417.u.a.a.b ##11	ENSGT00940000155417.u.a.a.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.j	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000159251 #10	ENSGT00940000155417.u.a.b.a.a.a ##11	ENSGT00940000155417.u.a.b.a.a.b ##11	ENSGT00940000155417.u.a.a.b ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.j	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Rambouillet Sheep	MODERN SPECIES		HOOK1 (ENSOARG00020023235) #10	CYP2J (ENSOARG00020023337) ##11	ENSOARG00020023639 #12	ENSOARG00020023663 ##11	NFIA (ENSOARG00020023719) #13	TM2D1 (ENSOARG00020024049) #14	PATJ (ENSOARG00020024177) #15	ENSOARG00020025242	ENSOARG00020025248 #16	ENSOARG00020025257 #16	KANK4 (ENSOARG00020025276) #17	USP1 (ENSOARG00020025306) #18	DOCK7 (ENSOARG00020025422) #20	ANGPTL3 (ENSOARG00020025829) #19	ATG4C (ENSOARG00020025832) #21	FOXD3 (ENSOARG00020025839) #22	ALG6 (ENSOARG00020025843) #23	ITGB3BP (ENSOARG00020025849) #25	ROR1 (ENSOARG00020025892) #28	UBE2U (ENSOARG00020025900) #29	CACHD1 (ENSOARG00020025918) #30	RAVER2 (ENSOARG00020025947) #31	JAK1 (ENSOARG00020025959) #32	ENSOARG00020025972 #37	DNAJC6 (ENSOARG00020025984)	LEPROT (ENSOARG00020026025)	LEPR (ENSOARG00020006509)	PDE4B (ENSOARG00020007182)	SGIP1 (ENSOARG00020007630)	ENSOARG00020008215	DYNLT5 (ENSOARG00020008255)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000155417.u.a.b.a.a.b ##11	ENSGT00940000155417.u.a.a.b ##11	ENSGT00940000155417.u.a.a.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00740000117158	ENSGT00940000162456.p	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a.j	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Bos	ANCESTRAL SPECIES		ENSGT00940000155417.u.a.b.a.a.b ##11	ENSGT00940000155417.u.a.a.b ##11	ENSGT00940000155417.u.a.a.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00740000117158	ENSGT00940000162456.p	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.u #37	ENSGT00940000158755	ENSGT00390000006503.a.j	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000155417.u.a.b.a.a.a.a ##11	ENSGT00940000155417.u.a.b.a.a.b ##11	ENSGT00940000155417.u.a.a.b ##11	ENSGT00940000155417.u.a.a.a ##11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00740000117158	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336.c.a #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.u #37	ENSGT00940000158755	ENSGT00390000006503.a.i.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Cow	MODERN SPECIES	22	ENSBTAG00000053766 ##11	ENSBTAG00000051904 ##11	ENSBTAG00000051542 ##11	C3H1orf87 (ENSBTAG00000009481) #12	NFIA (ENSBTAG00000000074) #13	ENSBTAG00000009769	TM2D1 (ENSBTAG00000017161) #14	ENSBTAG00000046720	PATJ (ENSBTAG00000021975) #15	ENSBTAG00000047830	KANK4 (ENSBTAG00000014382) #17	USP1 (ENSBTAG00000020451) #18	ANGPTL3 (ENSBTAG00000021386) #19	DOCK7 (ENSBTAG00000019877) #20	ATG4C (ENSBTAG00000010124) #21	FOXD3 (ENSBTAG00000008501) #22	ALG6 (ENSBTAG00000030706) #23	ITGB3BP (ENSBTAG00000030710) #25	EFCAB7 (ENSBTAG00000002600) #26	PGM1 (ENSBTAG00000019011) #27	ROR1 (ENSBTAG00000012312) #28	UBE2U (ENSBTAG00000040268) #29	CACHD1 (ENSBTAG00000016455) #30	RAVER2 (ENSBTAG00000030686) #31	JAK1 (ENSBTAG00000003147) #32	AK4 (ENSBTAG00000030674) #37	DNAJC6 (ENSBTAG00000030749)	LEPROT (ENSBTAG00000005909)	LEPR (ENSBTAG00000005910)	MGC137454 (ENSBTAG00000030852)	PDE4B (ENSBTAG00000008636)
Siberian musk deer	MODERN SPECIES	339					ENSMMSG00000010635 #13	TM2D1 (ENSMMSG00000010559) #14	ENSMMSG00000010512	PATJ (ENSMMSG00000010039) #15	ENSMMSG00000009951 #16	ENSMMSG00000009926	KANK4 (ENSMMSG00000009822) #17	ENSMMSG00000009774 #18	ANGPTL3 (ENSMMSG00000009744) #19	DOCK7 (ENSMMSG00000009564) #20	ATG4C (ENSMMSG00000009422) #21	FOXD3 (ENSMMSG00000009398) #22	ALG6 (ENSMMSG00000009336) #23	ITGB3BP (ENSMMSG00000009277) #25	EFCAB7 (ENSMMSG00000009202) #26	PGM1 (ENSMMSG00000009049) #27	ROR1 (ENSMMSG00000008912) #28	UBE2U (ENSMMSG00000008852) #29	CACHD1 (ENSMMSG00000008645) #30	RAVER2 (ENSMMSG00000008514) #31	JAK1 (ENSMMSG00000008290) #32	ENSMMSG00000008256	ENSMMSG00000008200 #37	ENSMMSG00000007989	LEPROT (ENSMMSG00000007926)	LEPR (ENSMMSG00000007649)	PDE4B (ENSMMSG00000007306)
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000013601 ##11	C1orf87 (ENSCHYG00000013337) #12	ENSCHYG00000013294	NFIA (ENSCHYG00000013049) #13	TM2D1 (ENSCHYG00000012921) #14	PATJ (ENSCHYG00000011502) #15	ENSCHYG00000011365	ENSCHYG00000011355 #16	ENSCHYG00000011320 #16	ENSCHYG00000011307	KANK4 (ENSCHYG00000011035) #17	USP1 (ENSCHYG00000010926) #18	ANGPTL3 (ENSCHYG00000010829) #19	DOCK7 (ENSCHYG00000010521) #20	ATG4C (ENSCHYG00000010279) #21	FOXD3 (ENSCHYG00000010241) #22	ALG6 (ENSCHYG00000010031) #23	ITGB3BP (ENSCHYG00000009805) #25	EFCAB7 (ENSCHYG00000009641) #26	PGM1 (ENSCHYG00000009453) #27	ROR1 (ENSCHYG00000009213) #28	UBE2U (ENSCHYG00000009046) #29	ENSCHYG00000009027	ENSCHYG00000008642 #30	ENSCHYG00000008481 #31	ENSCHYG00000008363 #32	ENSCHYG00000008325	ENSCHYG00000008297 #37	ENSCHYG00000007928	ENSCHYG00000007822	ENSCHYG00000007738
Camelidae	ANCESTRAL SPECIES	11	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417.v.c.b #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Arabian camel	MODERN SPECIES	4	MYSM1 (ENSCDRG00005014258) #7	JUN (ENSCDRG00005014307) #8	FGGY (ENSCDRG00005014344) #9	HOOK1 (ENSCDRG00005014570) #10	ENSCDRG00005014670 #11	ENSCDRG00005015188 #11	C1orf87 (ENSCDRG00005015266) #12	NFIA (ENSCDRG00005015494) #13	TM2D1 (ENSCDRG00005015765) #14	PATJ (ENSCDRG00005015902) #15	KANK4 (ENSCDRG00005016599) #17	USP1 (ENSCDRG00005016803) #18	DOCK7 (ENSCDRG00005016867) #20	ANGPTL3 (ENSCDRG00005017333) #19	ATG4C (ENSCDRG00005003431) #21	FOXD3 (ENSCDRG00005003471) #22	ALG6 (ENSCDRG00005003516) #23	ITGB3BP (ENSCDRG00005003577) #25	EFCAB7 (ENSCDRG00005003668) #26	PGM1 (ENSCDRG00005003722) #27	ROR1 (ENSCDRG00005003848) #28	UBE2U (ENSCDRG00005003953) #29	CACHD1 (ENSCDRG00005004143) #30	RAVER2 (ENSCDRG00005004547) #31	ENSCDRG00005004583	JAK1 (ENSCDRG00005004601) #32	ENSCDRG00005004652 #37	DNAJC6 (ENSCDRG00005004711)	LEPROT (ENSCDRG00005005302)	LEPR (ENSCDRG00005005388)	ENSCDRG00005005483
Suina	ANCESTRAL SPECIES	27	ENSGT00940000159251 #10	ENSGT00940000155417.u.b.a ##11	ENSGT00940000155417.v.a.b #11	ENSGT00940000155417.v.a.a.b #11	ENSGT00940000155417.v.b #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000164101.b #16	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185
Pig	MODERN SPECIES	14	ENSSSCG00000061116 #11	C1orf87 (ENSSSCG00000003823) #12	ENSSSCG00000033042	ENSSSCG00000057014	ENSSSCG00000044064	ENSSSCG00000059647	NFIA (ENSSSCG00000023243) #13	TM2D1 (ENSSSCG00000038861) #14	PATJ (ENSSSCG00000039793) #15	ENSSSCG00000031640 #16	KANK4 (ENSSSCG00000003821) #17	USP1 (ENSSSCG00000003820) #18	ANGPTL3 (ENSSSCG00000003819) #19	DOCK7 (ENSSSCG00000003818) #20	ATG4C (ENSSSCG00000003816) #21	FOXD3 (ENSSSCG00000032215) #22	ALG6 (ENSSSCG00000003815) #23	ENSSSCG00000042211	EFCAB7 (ENSSSCG00000003812) #26	ROR1 (ENSSSCG00000003811) #28	CACHD1 (ENSSSCG00000004829) #30	RAVER2 (ENSSSCG00000025672) #31	JAK1 (ENSSSCG00000003809) #32	ENSSSCG00000040337 #37	DNAJC6 (ENSSSCG00000003807)	LEPROT (ENSSSCG00000003806)	LEPR (ENSSSCG00000025188)	ENSSSCG00000040903	PDE4B (ENSSSCG00000003805)	SGIP1 (ENSSSCG00000025243)	DYNLT5 (ENSSSCG00000031352)
Chacoan peccary	MODERN SPECIES	54	ENSCWAG00000013744 ##11	ENSCWAG00000013698 #11	C1orf87 (ENSCWAG00000013603) #12	ENSCWAG00000013573	ENSCWAG00000013519	NFIA (ENSCWAG00000013155) #13	TM2D1 (ENSCWAG00000013044) #14	PATJ (ENSCWAG00000012251) #15	ENSCWAG00000012174 #16	KANK4 (ENSCWAG00000011865) #17	USP1 (ENSCWAG00000011770) #18	ANGPTL3 (ENSCWAG00000011690) #19	DOCK7 (ENSCWAG00000011480) #20	ENSCWAG00000011429	ATG4C (ENSCWAG00000011374) #21	FOXD3 (ENSCWAG00000011349) #22	ALG6 (ENSCWAG00000011295) #23	EFCAB7 (ENSCWAG00000011246) #26	PGM1 (ENSCWAG00000011042) #27	ROR1 (ENSCWAG00000010877) #28	ENSCWAG00000010798 #29	CACHD1 (ENSCWAG00000010433) #30	RAVER2 (ENSCWAG00000010298) #31	JAK1 (ENSCWAG00000010234) #32	ENSCWAG00000010175 #37	DNAJC6 (ENSCWAG00000009899)	LEPROT (ENSCWAG00000009749)	LEPR (ENSCWAG00000009654)	PDE4B (ENSCWAG00000008615)	SGIP1 (ENSCWAG00000007878)	DYNLT5 (ENSCWAG00000007809)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Carnivora	ANCESTRAL SPECIES	1	ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t.f	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t.f	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t.f	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
lion	MODERN SPECIES	8	MYSM1 (ENSPLOG00000012253) #7	JUN (ENSPLOG00000012226) #8	FGGY (ENSPLOG00000012145) #9	HOOK1 (ENSPLOG00000011920) #10	CYP2J2 (ENSPLOG00000011809) #11	C1orf87 (ENSPLOG00000011637) #12	NFIA (ENSPLOG00000011140) #13	TM2D1 (ENSPLOG00000010892) #14	PATJ (ENSPLOG00000010662) #15	L1TD1 (ENSPLOG00000010511)	ENSPLOG00000010404 #17	USP1 (ENSPLOG00000010281) #18	ANGPTL3 (ENSPLOG00000010232) #19	DOCK7 (ENSPLOG00000008689) #20	ATG4C (ENSPLOG00000008193) #21	FOXD3 (ENSPLOG00000008178) #22	ALG6 (ENSPLOG00000008139) #23	ITGB3BP (ENSPLOG00000008062) #25	EFCAB7 (ENSPLOG00000007985) #26	PGM1 (ENSPLOG00000007875) #27	ROR1 (ENSPLOG00000007754) #28	ENSPLOG00000007699 #29	CACHD1 (ENSPLOG00000007467) #30	ENSPLOG00000007407	RAVER2 (ENSPLOG00000007347) #31	JAK1 (ENSPLOG00000007282) #32	ENSPLOG00000007171	ENSPLOG00000007140 #37	DNAJC6 (ENSPLOG00000006842)	LEPR (ENSPLOG00000006675)	PDE4B (ENSPLOG00000006308)
leopard	MODERN SPECIES	16	JUN (ENSPPRG00000020728) #8	FGGY (ENSPPRG00000022697) #9	HOOK1 (ENSPPRG00000000392) #10	CYP2J2 (ENSPPRG00000000574) #11	C1orf87 (ENSPPRG00000001614) #12	NFIA (ENSPPRG00000004851) #13	TM2D1 (ENSPPRG00000005809) #14	ENSPPRG00000009261 #15	ENSPPRG00000011020 #15	L1TD1 (ENSPPRG00000011113)	KANK4 (ENSPPRG00000013316) #17	USP1 (ENSPPRG00000013661) #18	ANGPTL3 (ENSPPRG00000013921) #19	DOCK7 (ENSPPRG00000007918) #20	ATG4C (ENSPPRG00000009565) #21	FOXD3 (ENSPPRG00000014919) #22	ALG6 (ENSPPRG00000011811) #23	ITGB3BP (ENSPPRG00000012409) #25	EFCAB7 (ENSPPRG00000012738) #26	PGM1 (ENSPPRG00000013727) #27	ENSPPRG00000013850	ROR1 (ENSPPRG00000017823) #28	UBE2U (ENSPPRG00000021247) #29	ENSPPRG00000023862	CACHD1 (ENSPPRG00000023686) #30	RAVER2 (ENSPPRG00000023350) #31	JAK1 (ENSPPRG00000022662) #32	ENSPPRG00000000367	ENSPPRG00000000962 #37	DNAJC6 (ENSPPRG00000002001)	LEPROT (ENSPPRG00000002176)
Cat	MODERN SPECIES	239	FGGY (ENSFCAG00000030121) #9	HOOK1 (ENSFCAG00000018198) #10	CYP2J2 (ENSFCAG00000011145) #11	C1orf87 (ENSFCAG00000011149) #12	NFIA (ENSFCAG00000005997) #13	TM2D1 (ENSFCAG00000000772) #14	PATJ (ENSFCAG00000005299) #15	L1TD1 (ENSFCAG00000042658)	KANK4 (ENSFCAG00000000371) #17	USP1 (ENSFCAG00000023269) #18	DOCK7 (ENSFCAG00000022720) #20	ANGPTL3 (ENSFCAG00000011284) #19	ATG4C (ENSFCAG00000027083) #21	ENSFCAG00000052912	ENSFCAG00000043193	FOXD3 (ENSFCAG00000045701) #22	ENSFCAG00000025108	ALG6 (ENSFCAG00000027407) #23	ITGB3BP (ENSFCAG00000025609) #25	EFCAB7 (ENSFCAG00000024580) #27	ROR1 (ENSFCAG00000013779) #28	UBE2U (ENSFCAG00000024149) #29	CACHD1 (ENSFCAG00000010902) #30	RAVER2 (ENSFCAG00000022781) #31	JAK1 (ENSFCAG00000001953) #32	AK4 (ENSFCAG00000033540) #37	DNAJC6 (ENSFCAG00000008367)	LEPR (ENSFCAG00000011703)	PDE4B (ENSFCAG00000030002)	SGIP1 (ENSFCAG00000011575)	DYNLT5 (ENSFCAG00000038222)
Caniformia	ANCESTRAL SPECIES	2	ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Canidae	ANCESTRAL SPECIES	11	ENSGT01000000214434.F #9	ENSGT00990000211939	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01100000266959	ENSGT01050000244818.t.d	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000156679.f	ENSGT00390000007084.c.a.e.a	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000154679.dc	ENSGT00940000157820.a.b	ENSGT01050000244818.t.d	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00530000063666.b.y.a.b.b	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000156679.f	ENSGT00390000007084.c.a.e.a	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00950000183030.m.a.b.a.b	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a
Dingo	MODERN SPECIES	373	ENSCAFG00020012805 #13	TM2D1 (ENSCAFG00020012812) #14	ENSCAFG00020012823 #15	ENSCAFG00020012901 #15	ENSCAFG00020012948	ENSCAFG00020012949	L1TD1 (ENSCAFG00020012951)	ENSCAFG00020012955 #17	ENSCAFG00020012959 #17	USP1 (ENSCAFG00020012966) #18	DOCK7 (ENSCAFG00020013336) #20	ANGPTL3 (ENSCAFG00020017900) #19	ATG4C (ENSCAFG00020017922) #21	ENSCAFG00020017929	ENSCAFG00020017930	FOXD3 (ENSCAFG00020017935) #22	ALG6 (ENSCAFG00020017936) #23	ITGB3BP (ENSCAFG00020017944) #25	EFCAB7 (ENSCAFG00020017957) #26	PGM1 (ENSCAFG00020017963) #27	ENSCAFG00020017973 #28	ROR1 (ENSCAFG00020017975) #28	UBE2U (ENSCAFG00020017979) #29	ENSCAFG00020018002	ENSCAFG00020018007	CACHD1 (ENSCAFG00020018033) #30	RAVER2 (ENSCAFG00020018120) #31	JAK1 (ENSCAFG00020018270) #32	ENSCAFG00020020417	ENSCAFG00020020420 #37	DNAJC6 (ENSCAFG00020020422)
Dog	MODERN SPECIES	33	CYP2J2 (ENSCAFG00845005961) #11	C5H1orf87 (ENSCAFG00845005904) #12	NFIA (ENSCAFG00845005661) #13	TM2D1 (ENSCAFG00845005499) #14	PATJ (ENSCAFG00845005350) #15	ENSCAFG00845005273	ENSCAFG00845005266	L1TD1 (ENSCAFG00845005257)	KANK4 (ENSCAFG00845005174) #17	USP1 (ENSCAFG00845005152) #18	ANGPTL3 (ENSCAFG00845005144) #19	DOCK7 (ENSCAFG00845005064) #20	ATG4C (ENSCAFG00845005004) #21	ENSCAFG00845004990	ENSCAFG00845004987	FOXD3 (ENSCAFG00845004983) #22	ALG6 (ENSCAFG00845004972) #23	ITGB3BP (ENSCAFG00845004941) #25	EFCAB7 (ENSCAFG00845004924) #26	PGM1 (ENSCAFG00845004898) #27	ENSCAFG00845004877	ROR1 (ENSCAFG00845004850) #28	UBE2U (ENSCAFG00845004817) #29	ENSCAFG00845004810	ENSCAFG00845004800	ENSCAFG00845004792	CACHD1 (ENSCAFG00845004709) #30	ENSCAFG00845004661	RAVER2 (ENSCAFG00845004615) #31	JAK1 (ENSCAFG00845004547) #32	ENSCAFG00845004516
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Ursidae	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t.b	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT01030000238341	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Ursus	ANCESTRAL SPECIES	18			ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t.b	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600
American black bear	MODERN SPECIES	3773																FOXD3 (ENSUAMG00000007532) #22	ALG6 (ENSUAMG00000007530) #23
Giant Panda	MODERN SPECIES	11	JUN (ENSAMEG00000029207) #8	FGGY (ENSAMEG00000000277) #9	HOOK1 (ENSAMEG00000000285) #10	CYP2J2 (ENSAMEG00000000342) #11	ENSAMEG00000000383 #12	NFIA (ENSAMEG00000011711) #13	TM2D1 (ENSAMEG00000011705) #14	PATJ (ENSAMEG00000011620) #15	L1TD1 (ENSAMEG00000014821)	KANK4 (ENSAMEG00000014824) #17	USP1 (ENSAMEG00000014832) #18	DOCK7 (ENSAMEG00000014852) #20	ANGPTL3 (ENSAMEG00000014967) #19	ATG4C (ENSAMEG00000014990) #21	ENSAMEG00000015017	FOXD3 (ENSAMEG00000025968) #22	ALG6 (ENSAMEG00000015024) #23	ITGB3BP (ENSAMEG00000025500) #25	EFCAB7 (ENSAMEG00000015027) #26	PGM1 (ENSAMEG00000015053) #27	ROR1 (ENSAMEG00000026239) #28	ENSAMEG00000015106 #29	CACHD1 (ENSAMEG00000015187) #30	RAVER2 (ENSAMEG00000015178) #31	JAK1 (ENSAMEG00000014980) #32	ENSAMEG00000020190	AK4 (ENSAMEG00000030587) #37	DNAJC6 (ENSAMEG00000014950)	LEPROT (ENSAMEG00000025091)	LEPR (ENSAMEG00000018031)	PDE4B (ENSAMEG00000018054)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Equus	ANCESTRAL SPECIES	3					ENSGT00390000008678 #12	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818.t.h	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Donkey	MODERN SPECIES	7			ENSEASG00005008953 #12	ENSEASG00005027546	NFIA (ENSEASG00005008945) #13	ENSEASG00005008936 #14	PATJ (ENSEASG00005008849) #15	L1TD1 (ENSEASG00005008811)	KANK4 (ENSEASG00005008809) #17	USP1 (ENSEASG00005008805) #18	ENSEASG00005008801	ANGPTL3 (ENSEASG00005008790) #19	DOCK7 (ENSEASG00005008261) #20	ATG4C (ENSEASG00005008203) #21	ENSEASG00005027466	ENSEASG00005034981 #22	ALG6 (ENSEASG00005008197) #23	ITGB3BP (ENSEASG00005008189) #25	EFCAB7 (ENSEASG00005008181) #26	PGM1 (ENSEASG00005008175) #27	ROR1 (ENSEASG00005008170) #28	ENSEASG00005008168 #29	ENSEASG00005020139	ENSEASG00005008165	CACHD1 (ENSEASG00005008161) #30	RAVER2 (ENSEASG00005008158) #31	JAK1 (ENSEASG00005008150) #32	ENSEASG00005008138 #37	DNAJC6 (ENSEASG00005008132)	LEPROT (ENSEASG00005037559)	LEPR (ENSEASG00005008026)
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Greater horseshoe bat	MODERN SPECIES	27	ENSRFEG00010001627 #11	ENSRFEG00010001785 #11	ENSRFEG00010001873 #11	ENSRFEG00010002128 #11	ENSRFEG00010002144 #12	ENSRFEG00010002162	NFIA (ENSRFEG00010002359) #13	ENSRFEG00010002611	TM2D1 (ENSRFEG00010002648) #14	PATJ (ENSRFEG00010002868) #15	KANK4 (ENSRFEG00010003055) #17	USP1 (ENSRFEG00010003131) #18	DOCK7 (ENSRFEG00010003268) #20	ANGPTL3 (ENSRFEG00010003412) #19	ATG4C (ENSRFEG00010003453) #21	FOXD3 (ENSRFEG00010003478) #22	ENSRFEG00010003488	ALG6 (ENSRFEG00010003519) #23	ITGB3BP (ENSRFEG00010003573) #25	EFCAB7 (ENSRFEG00010003607) #26	PGM1 (ENSRFEG00010003661) #27	ROR1 (ENSRFEG00010003713) #28	ENSRFEG00010003748 #29	CACHD1 (ENSRFEG00010003774) #30	RAVER2 (ENSRFEG00010003831) #31	JAK1 (ENSRFEG00010003864) #32	ENSRFEG00010003929 #37	DNAJC6 (ENSRFEG00010003981)	LEPROT (ENSRFEG00010004090)	LEPR (ENSRFEG00010004114)	PDE4B (ENSRFEG00010004177)
Microbat	MODERN SPECIES	1000						ENSMLUG00000024011 #13	ENSMLUG00000008375 #13	TM2D1 (ENSMLUG00000028750) #14	PATJ (ENSMLUG00000006861) #15	KANK4 (ENSMLUG00000006932) #17	USP1 (ENSMLUG00000012439) #18	DOCK7 (ENSMLUG00000012444) #20	ANGPTL3 (ENSMLUG00000015497) #19	ATG4C (ENSMLUG00000029040) #21	ENSMLUG00000028331	FOXD3 (ENSMLUG00000006018) #22	ALG6 (ENSMLUG00000004045) #23	ITGB3BP (ENSMLUG00000004057) #25	EFCAB7 (ENSMLUG00000011542) #26	ENSMLUG00000023512	PGM1 (ENSMLUG00000012744) #27	ROR1 (ENSMLUG00000010560) #28	ENSMLUG00000010579 #29	CACHD1 (ENSMLUG00000007663) #30	ENSMLUG00000028943	RAVER2 (ENSMLUG00000007699) #31	JAK1 (ENSMLUG00000007723) #32	ENSMLUG00000009622 #37	DNAJC6 (ENSMLUG00000009642)	LEPROT (ENSMLUG00000028850)	LEPR (ENSMLUG00000016208)
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00910000148334
Primates	ANCESTRAL SPECIES	4	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214	ENSGT00940000155190
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214	ENSGT00940000155190
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214
Platyrrhini	ANCESTRAL SPECIES		ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668.e #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.b #37	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Mas night monkey	MODERN SPECIES	1222	HOOK1 (ENSANAG00000033388) #10	CYP2J2 (ENSANAG00000033520) #11	C1orf87 (ENSANAG00000023663) #12	NFIA (ENSANAG00000036346) #13	ENSANAG00000030015	ENSANAG00000003030	ENSANAG00000037649	ENSANAG00000034084 #14	PATJ (ENSANAG00000000542) #15	ENSANAG00000036983	KANK4 (ENSANAG00000036007) #17	USP1 (ENSANAG00000034698) #18	DOCK7 (ENSANAG00000016461) #20	ANGPTL3 (ENSANAG00000015249) #19	ATG4C (ENSANAG00000022513) #21	FOXD3 (ENSANAG00000002392) #22	ENSANAG00000029682	ALG6 (ENSANAG00000022443) #23	ITGB3BP (ENSANAG00000028085) #25	EFCAB7 (ENSANAG00000026634) #26	PGM1 (ENSANAG00000027470) #27	ROR1 (ENSANAG00000025721) #28	ENSANAG00000019274	UBE2U (ENSANAG00000033933) #29	CACHD1 (ENSANAG00000033660) #30	RAVER2 (ENSANAG00000025857) #31	ENSANAG00000032030	JAK1 (ENSANAG00000036647) #32	ENSANAG00000035974	ENSANAG00000018683	AK4 (ENSANAG00000003723) #37
Cebidae	ANCESTRAL SPECIES	1	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668.e #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243.e #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.b #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190
Cebidae_a	ANCESTRAL SPECIES		ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668.e #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243.e.a #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.b #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190
Capuchin	MODERN SPECIES	135						ENSCCAG00000002026	NFIA (ENSCCAG00000034568) #13	ENSCCAG00000037571 #14	ENSCCAG00000031088	PATJ (ENSCCAG00000020603) #15	KANK4 (ENSCCAG00000020881) #17	ENSCCAG00000032139 #18	ANGPTL3 (ENSCCAG00000037800) #19	DOCK7 (ENSCCAG00000036383) #20	ATG4C (ENSCCAG00000014124) #21	FOXD3 (ENSCCAG00000020242) #22	ENSCCAG00000037577	ALG6 (ENSCCAG00000026213) #23	ENSCCAG00000019669	ENSCCAG00000023464	ITGB3BP (ENSCCAG00000023808) #25	EFCAB7 (ENSCCAG00000030206) #26	PGM1 (ENSCCAG00000022674) #27	ROR1 (ENSCCAG00000036191) #28	UBE2U (ENSCCAG00000015166) #29	CACHD1 (ENSCCAG00000023418) #30	RAVER2 (ENSCCAG00000029834) #31	JAK1 (ENSCCAG00000021638) #32	ENSCCAG00000026470	AK4 (ENSCCAG00000027862) #37	ENSCCAG00000037501
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Orangutan	MODERN SPECIES		MYSM1 (ENSPPYG00000001296) #7	JUN (ENSPPYG00000001295) #8	FGGY (ENSPPYG00000001294) #9	HOOK1 (ENSPPYG00000001293) #10	CYP2J2 (ENSPPYG00000001292) #11	C1orf87 (ENSPPYG00000001291) #12	NFIA (ENSPPYG00000001290) #13	ENSPPYG00000001288 #14	PATJ (ENSPPYG00000001287) #15	L1TD1 (ENSPPYG00000001286)	KANK4 (ENSPPYG00000001285) #17	USP1 (ENSPPYG00000001284) #18	ANGPTL3 (ENSPPYG00000001283) #19	DOCK7 (ENSPPYG00000001280) #20	ATG4C (ENSPPYG00000001279) #21	FOXD3 (ENSPPYG00000001278) #22	ALG6 (ENSPPYG00000001277) #23	ITGB3BP (ENSPPYG00000001276) #25	EFCAB7 (ENSPPYG00000001275) #26	PGM1 (ENSPPYG00000029788) #27	ENSPPYG00000040176	ROR1 (ENSPPYG00000001274) #28	ENSPPYG00000001273 #29	CACHD1 (ENSPPYG00000001272) #30	RAVER2 (ENSPPYG00000001271) #31	JAK1 (ENSPPYG00000001270) #32	AK4 (ENSPPYG00000001269) #37	DNAJC6 (ENSPPYG00000010671)	LEPROT (ENSPPYG00000035587)	LEPR (ENSPPYG00000001267)	PDE4B (ENSPPYG00000001266)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214
Gorilla	MODERN SPECIES		CYP2J2 (ENSGGOG00000001607) #11	C1orf87 (ENSGGOG00000011908) #12	ENSGGOG00000027445 #13	ENSGGOG00000043710	ENSGGOG00000036939 #13	ENSGGOG00000043907	TM2D1 (ENSGGOG00000008515) #14	PATJ (ENSGGOG00000010129) #15	ENSGGOG00000023722	L1TD1 (ENSGGOG00000026365)	KANK4 (ENSGGOG00000041061) #17	USP1 (ENSGGOG00000024567) #18	DOCK7 (ENSGGOG00000025768) #20	ANGPTL3 (ENSGGOG00000003946) #19	ATG4C (ENSGGOG00000007252) #21	ENSGGOG00000027326 #22	ALG6 (ENSGGOG00000015986) #23	ITGB3BP (ENSGGOG00000004727) #25	EFCAB7 (ENSGGOG00000012467) #26	PGM1 (ENSGGOG00000016004) #27	ROR1 (ENSGGOG00000013797) #28	ENSGGOG00000043317	UBE2U (ENSGGOG00000001480) #29	CACHD1 (ENSGGOG00000007691) #30	RAVER2 (ENSGGOG00000016447) #31	JAK1 (ENSGGOG00000016456) #32	ENSGGOG00000025825	AK4 (ENSGGOG00000026644) #37	DNAJC6 (ENSGGOG00000010799)	LEPROT (ENSGGOG00000036673)	LEPR (ENSGGOG00000000076)
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214
Pan	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000162491.b.b	ENSGT00940000154568.q.a.b #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT01100000263543.a.g.a
Chimpanzee	MODERN SPECIES		HOOK1 (ENSPTRG00000000799) #10	CYP2J2 (ENSPTRG00000000800) #11	C1H1orf87 (ENSPTRG00000000801) #12	NFIA (ENSPTRG00000000802) #13	ENSPTRG00000045390	TM2D1 (ENSPTRG00000000803) #14	PATJ (ENSPTRG00000000806) #15	ENSPTRG00000052807	ENSPTRG00000044616	L1TD1 (ENSPTRG00000034387)	KANK4 (ENSPTRG00000000809) #17	USP1 (ENSPTRG00000000810) #18	DOCK7 (ENSPTRG00000000811) #20	ANGPTL3 (ENSPTRG00000000812) #19	ATG4C (ENSPTRG00000000813) #21	FOXD3 (ENSPTRG00000030580) #22	ALG6 (ENSPTRG00000000815) #23	ITGB3BP (ENSPTRG00000000816) #25	EFCAB7 (ENSPTRG00000030579) #26	PGM1 (ENSPTRG00000000820) #27	ROR1 (ENSPTRG00000024245) #28	ENSPTRG00000045538	UBE2U (ENSPTRG00000000822) #29	CACHD1 (ENSPTRG00000000823) #30	RAVER2 (ENSPTRG00000000824) #31	JAK1 (ENSPTRG00000000825) #32	ENSPTRG00000048144	AK4 (ENSPTRG00000000827) #37	DNAJC6 (ENSPTRG00000000829)	LEPROT (ENSPTRG00000046978)	ENSPTRG00000052596
Human	MODERN SPECIES		MYSM1 (ENSG00000162601) #7	JUN (ENSG00000177606) #8	FGGY (ENSG00000172456) #9	HOOK1 (ENSG00000134709) #10	CYP2J2 (ENSG00000134716) #11	C1orf87 (ENSG00000162598) #12	NFIA (ENSG00000162599) #13	TM2D1 (ENSG00000162604) #14	PATJ (ENSG00000132849) #15	L1TD1 (ENSG00000240563)	KANK4 (ENSG00000132854) #17	USP1 (ENSG00000162607) #18	DOCK7 (ENSG00000116641) #20	ANGPTL3 (ENSG00000132855) #19	ATG4C (ENSG00000125703) #21	FOXD3 (ENSG00000187140) #22	ALG6 (ENSG00000088035) #23	ITGB3BP (ENSG00000142856) #25	EFCAB7 (ENSG00000203965) #26	PGM1 (ENSG00000079739) #27	ROR1 (ENSG00000185483) #28	UBE2U (ENSG00000177414) #29	CACHD1 (ENSG00000158966) #30	RAVER2 (ENSG00000162437) #31	JAK1 (ENSG00000162434) #32	AK4 (ENSG00000162433) #37	DNAJC6 (ENSG00000116675)	LEPROT (ENSG00000213625)	LEPR (ENSG00000116678)	PDE4B (ENSG00000184588)	SGIP1 (ENSG00000118473)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148334
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000159669	ENSGT00940000160210	ENSGT00940000158688	ENSGT00910000147898	ENSGT00940000159534	ENSGT00940000161331	ENSGT00390000006247	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148334
Black snub-nosed monkey	MODERN SPECIES	569	HOOK1 (ENSRBIG00000004303) #10	CYP2J2 (ENSRBIG00000034286) #11	C1orf87 (ENSRBIG00000026690) #12	ENSRBIG00000019391	NFIA (ENSRBIG00000032076) #13	TM2D1 (ENSRBIG00000032068) #14	ENSRBIG00000034372	PATJ (ENSRBIG00000043813) #15	L1TD1 (ENSRBIG00000005782)	ENSRBIG00000035631 #17	USP1 (ENSRBIG00000041920) #18	ANGPTL3 (ENSRBIG00000033798) #19	DOCK7 (ENSRBIG00000036983) #20	ATG4C (ENSRBIG00000027148) #21	ENSRBIG00000026704	ENSRBIG00000026600 #22	ALG6 (ENSRBIG00000035347) #23	ITGB3BP (ENSRBIG00000037404) #25	EFCAB7 (ENSRBIG00000029286) #26	PGM1 (ENSRBIG00000035757) #27	ENSRBIG00000004039	ROR1 (ENSRBIG00000029149) #28	UBE2U (ENSRBIG00000044579) #29	CACHD1 (ENSRBIG00000044274) #30	RAVER2 (ENSRBIG00000044090) #31	JAK1 (ENSRBIG00000010792) #32	AK4 (ENSRBIG00000035967) #37	DNAJC6 (ENSRBIG00000036399)	LEPROT (ENSRBIG00000032071)	LEPR (ENSRBIG00000038066)	ENSRBIG00000035828
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148334
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d.d	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Macaca	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00390000012628.a.a.d.d	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209
Pig-tailed macaque	MODERN SPECIES	217	ENSMNEG00000033506	HOOK1 (ENSMNEG00000005935) #10	CYP2J2 (ENSMNEG00000029436) #11	C1orf87 (ENSMNEG00000039821) #12	ENSMNEG00000029281	NFIA (ENSMNEG00000033257) #13	TM2D1 (ENSMNEG00000034247) #14	PATJ (ENSMNEG00000022006) #15	ENSMNEG00000030822	L1TD1 (ENSMNEG00000030098)	KANK4 (ENSMNEG00000032440) #17	USP1 (ENSMNEG00000033298) #18	DOCK7 (ENSMNEG00000032463) #20	ANGPTL3 (ENSMNEG00000031218) #19	ATG4C (ENSMNEG00000038662) #21	FOXD3 (ENSMNEG00000021981) #22	ALG6 (ENSMNEG00000004099) #23	ITGB3BP (ENSMNEG00000029344) #25	EFCAB7 (ENSMNEG00000042983) #26	PGM1 (ENSMNEG00000039633) #27	ROR1 (ENSMNEG00000009711) #28	ENSMNEG00000034714
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00940000164709.a.b.b.a.a.b.a.a.a.a.b.a.a.a.b	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190
Rhesus	MODERN SPECIES		C1H1orf87 (ENSMMUG00000006756) #12	ENSMMUG00000052202	NFIA (ENSMMUG00000013840) #13	TM2D1 (ENSMMUG00000010931) #14	PATJ (ENSMMUG00000003113) #15	ENSMMUG00000064743	L1TD1 (ENSMMUG00000006485)	KANK4 (ENSMMUG00000010351) #17	USP1 (ENSMMUG00000002339) #18	ANGPTL3 (ENSMMUG00000046449) #19	DOCK7 (ENSMMUG00000002340) #20	ENSMMUG00000050619	ENSMMUG00000056324	ATG4C (ENSMMUG00000000386) #21	ENSMMUG00000058152	FOXD3 (ENSMMUG00000022350) #22	ALG6 (ENSMMUG00000020046) #23	ITGB3BP (ENSMMUG00000020047) #25	PGM1 (ENSMMUG00000020049) #27	ENSMMUG00000061816	ROR1 (ENSMMUG00000004668) #28	ENSMMUG00000056799	UBE2U (ENSMMUG00000012538) #29	CACHD1 (ENSMMUG00000007577) #30	ENSMMUG00000064480	RAVER2 (ENSMMUG00000018565) #31	JAK1 (ENSMMUG00000018566) #32	AK4 (ENSMMUG00000053254) #37	DNAJC6 (ENSMMUG00000017259)	LEPROT (ENSMMUG00000003264)	LEPR (ENSMMUG00000003265)
Crab-eating macaque	MODERN SPECIES		FGGY (ENSMFAG00000037904) #9	HOOK1 (ENSMFAG00000000847) #10	CYP2J2 (ENSMFAG00000003319) #11	C1orf87 (ENSMFAG00000044638) #12	NFIA (ENSMFAG00000045828) #13	TM2D1 (ENSMFAG00000040223) #14	ENSMFAG00000034621	PATJ (ENSMFAG00000044826) #15	L1TD1 (ENSMFAG00000031887)	KANK4 (ENSMFAG00000032159) #17	USP1 (ENSMFAG00000043530) #18	ANGPTL3 (ENSMFAG00000007083) #19	DOCK7 (ENSMFAG00000032390) #20	ENSMFAG00000058446	ATG4C (ENSMFAG00000038279) #21	FOXD3 (ENSMFAG00000052856) #22	ALG6 (ENSMFAG00000041396) #23	ENSMFAG00000040062 #25	EFCAB7 (ENSMFAG00000001765) #26	ENSMFAG00000022559	ROR1 (ENSMFAG00000041091) #28	UBE2U (ENSMFAG00000024825) #29	CACHD1 (ENSMFAG00000037670) #30	RAVER2 (ENSMFAG00000031436) #31	JAK1 (ENSMFAG00000003493) #32	AK4 (ENSMFAG00000029324) #37	DNAJC6 (ENSMFAG00000044659)	LEPROT (ENSMFAG00000033874)	LEPR (ENSMFAG00000001122)	PDE4B (ENSMFAG00000000162)	SGIP1 (ENSMFAG00000045356)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.q.a.a.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148334	ENSGT00940000155190
Olive baboon	MODERN SPECIES		L1TD1 (ENSPANG00000021627)	ENSPANG00000038690	ENSPANG00000012982 #17	ENSPANG00000034374	ENSPANG00000011286	USP1 (ENSPANG00000024232) #18	DOCK7 (ENSPANG00000005717) #20	ANGPTL3 (ENSPANG00000025663) #19	ATG4C (ENSPANG00000020948) #21	ENSPANG00000049405	ENSPANG00000041773	ENSPANG00000043207	ENSPANG00000049429	ENSPANG00000048165	ENSPANG00000038350	FOXD3 (ENSPANG00000017676) #22	ALG6 (ENSPANG00000004754) #23	ITGB3BP (ENSPANG00000024945) #25	ENSPANG00000023471 #27	ROR1 (ENSPANG00000023470) #28	ENSPANG00000049418	ENSPANG00000031367	UBE2U (ENSPANG00000020216) #29	CACHD1 (ENSPANG00000010808) #30	RAVER2 (ENSPANG00000003396) #31	JAK1 (ENSPANG00000001284) #32	AK4 (ENSPANG00000012980) #37	DNAJC6 (ENSPANG00000006287)	LEPROT (ENSPANG00000003123)	ENSPANG00000017953	ENSPANG00000047632
Cercopithecinae_d	ANCESTRAL SPECIES	19	ENSGT00940000157721 #7	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00390000012628.b	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000162491.b.b	ENSGT00940000154568.q.a.a.b.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148334
Sooty mangabey	MODERN SPECIES	238	HOOK1 (ENSCATG00000041461) #10	CYP2J2 (ENSCATG00000040512) #11	C1orf87 (ENSCATG00000044396) #12	ENSCATG00000040049	NFIA (ENSCATG00000012748) #13	TM2D1 (ENSCATG00000041406) #14	ENSCATG00000037296	PATJ (ENSCATG00000039233) #15	L1TD1 (ENSCATG00000038295)	KANK4 (ENSCATG00000036371) #17	ENSCATG00000019757	USP1 (ENSCATG00000015135) #18	ANGPTL3 (ENSCATG00000012804) #19	DOCK7 (ENSCATG00000040198) #20	ATG4C (ENSCATG00000042641) #21	FOXD3 (ENSCATG00000018412) #22	ALG6 (ENSCATG00000042255) #23	ITGB3BP (ENSCATG00000041208) #25	EFCAB7 (ENSCATG00000034513) #26	PGM1 (ENSCATG00000043055) #27	ROR1 (ENSCATG00000032220) #28	UBE2U (ENSCATG00000040169) #29	CACHD1 (ENSCATG00000036728) #30	ENSCATG00000001153	RAVER2 (ENSCATG00000040658) #31	JAK1 (ENSCATG00000041174) #32	ENSCATG00000041319	AK4 (ENSCATG00000029189) #37	DNAJC6 (ENSCATG00000034774)	LEPROT (ENSCATG00000035075)	LEPR (ENSCATG00000032495)
Vervet Monkey	MODERN SPECIES	12	FGGY (ENSCSAG00000001328) #9	ENSCSAG00000001329	HOOK1 (ENSCSAG00000001330) #10	CYP2J2 (ENSCSAG00000001331) #11	C1orf87 (ENSCSAG00000001332) #12	ENSCSAG00000001333 #13	ENSCSAG00000001334 #13	TM2D1 (ENSCSAG00000001335) #14	PATJ (ENSCSAG00000001336) #15	L1TD1 (ENSCSAG00000001337)	KANK4 (ENSCSAG00000001338) #17	USP1 (ENSCSAG00000001339) #18	ANGPTL3 (ENSCSAG00000001340) #19	DOCK7 (ENSCSAG00000001341) #20	ATG4C (ENSCSAG00000001342) #21	FOXD3 (ENSCSAG00000000150) #22	ALG6 (ENSCSAG00000001343) #23	ITGB3BP (ENSCSAG00000001344) #25	EFCAB7 (ENSCSAG00000001345) #26	PGM1 (ENSCSAG00000001346) #27	ROR1 (ENSCSAG00000001347) #28	UBE2U (ENSCSAG00000001348) #29	CACHD1 (ENSCSAG00000001349) #30	RAVER2 (ENSCSAG00000001350) #31	JAK1 (ENSCSAG00000001351) #32	DNAJC6 (ENSCSAG00000001352)	LEPROT (ENSCSAG00000001353)	LEPR (ENSCSAG00000001354)	PDE4B (ENSCSAG00000001355)	SGIP1 (ENSCSAG00000001356)	DYNLT5 (ENSCSAG00000001357)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214	ENSGT00940000155190
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00910000148214	ENSGT00940000155190
Mouse lemur	MODERN SPECIES	11	FGGY (ENSMICG00000013422) #9	HOOK1 (ENSMICG00000027305) #10	CYP2J90P (ENSMICG00000008762) #11	ENSMICG00000013472 #11	C1orf87 (ENSMICG00000013485) #12	NFIA (ENSMICG00000005075) #13	ENSMICG00000012681	ENSMICG00000014211 #14	PATJ (ENSMICG00000014246) #15	L1TD1 (ENSMICG00000045847)	KANK4 (ENSMICG00000001495) #17	USP1 (ENSMICG00000001502) #18	ANGPTL3 (ENSMICG00000001535) #19	DOCK7 (ENSMICG00000001507) #20	ATG4C (ENSMICG00000001538) #21	FOXD3 (ENSMICG00000044158) #22	ALG6 (ENSMICG00000000388) #23	ENSMICG00000046047 #25	ENSMICG00000042686	EFCAB7 (ENSMICG00000013626) #26	ENSMICG00000037361	ERICH3 (ENSMICG00000038155)	LRRC53 (ENSMICG00000044386)	TNNI3K (ENSMICG00000015807)	FPGT (ENSMICG00000047410)	NEGR1 (ENSMICG00000046222)	ENSMICG00000033235	ZRANB2 (ENSMICG00000033818)	ENSMICG00000047975	PTGER3 (ENSMICG00000011907)	ENSMICG00000043640
Lemuriformes_a	ANCESTRAL SPECIES	20	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Coquerels sifaka	MODERN SPECIES	162	CYP2J89 (ENSPCOG00000020225) #11	C1orf87 (ENSPCOG00000021292) #12	NFIA (ENSPCOG00000024842) #13	ENSPCOG00000013689	ENSPCOG00000026994	TM2D1 (ENSPCOG00000009377) #14	PATJ (ENSPCOG00000016693) #15	L1TD1 (ENSPCOG00000005879)	KANK4 (ENSPCOG00000016012) #17	USP1 (ENSPCOG00000027490) #18	ANGPTL3 (ENSPCOG00000017735) #19	ENSPCOG00000018206	DOCK7 (ENSPCOG00000015316) #20	ATG4C (ENSPCOG00000012978) #21	ENSPCOG00000001381	FOXD3 (ENSPCOG00000004911) #22	ALG6 (ENSPCOG00000013331) #23	ITGB3BP (ENSPCOG00000016479) #25	EFCAB7 (ENSPCOG00000022247) #26	PGM1 (ENSPCOG00000019160) #27	ROR1 (ENSPCOG00000013692) #28	UBE2U (ENSPCOG00000025850) #29	CACHD1 (ENSPCOG00000018645) #30	RAVER2 (ENSPCOG00000028379) #31	JAK1 (ENSPCOG00000018189) #32	ENSPCOG00000025120 #37	DNAJC6 (ENSPCOG00000021196)	LEPROT (ENSPCOG00000027148)	LEPR (ENSPCOG00000017023)	ENSPCOG00000016467	KCNMB2 (ENSPCOG00000021563)
Greater bamboo lemur	MODERN SPECIES	647																FOXD3 (ENSPSMG00000007018) #22	ALG6 (ENSPSMG00000006968) #23	ITGB3BP (ENSPSMG00000006890) #25	EFCAB7 (ENSPSMG00000006885) #26	PGM1 (ENSPSMG00000006861) #27	ROR1 (ENSPSMG00000006825) #28	UBE2U (ENSPSMG00000006796) #29	CACHD1 (ENSPSMG00000006786) #30	RAVER2 (ENSPSMG00000006729) #31	JAK1 (ENSPSMG00000006700) #32	ENSPSMG00000006649 #37	DNAJC6 (ENSPSMG00000006640)	LEPROT (ENSPSMG00000006583)	LEPR (ENSPSMG00000006503)	PDE4B (ENSPSMG00000006182)	SGIP1 (ENSPSMG00000005876)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Glires	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Rodentia	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Myomorpha	ANCESTRAL SPECIES	55	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00950000182879.b.a.b.b	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000155417.b #11	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.a.a #11	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.b #11	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.a.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.g.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00950000182879.b.a.a	ENSGT00940000155417.b #11	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.a.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.g.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Golden Hamster	MODERN SPECIES	662	ENSMAUG00000008711	ENSMAUG00000021213 #11	Cyp2j6 (ENSMAUG00000021242)	ENSMAUG00000003529	Gm12695 (ENSMAUG00000020018) #12	Nfia (ENSMAUG00000012950) #13	Tm2d1 (ENSMAUG00000017246) #14	Patj (ENSMAUG00000021478) #15	L1td1 (ENSMAUG00000020769)	Kank4 (ENSMAUG00000020783) #17	Usp1 (ENSMAUG00000010459) #18	Dock7 (ENSMAUG00000005545) #20	Angptl3 (ENSMAUG00000006669) #19	Atg4c (ENSMAUG00000017548) #21	ENSMAUG00000011992	Foxd3 (ENSMAUG00000008235) #22	Alg6 (ENSMAUG00000018206) #23	Itgb3bp (ENSMAUG00000019227) #25	Efcab7 (ENSMAUG00000012770) #26	Pgm1 (ENSMAUG00000000807) #27
Chinese hamster chok1gshd	MODERN SPECIES	111	Cyp2j6 (ENSCGRG00001017724)	ENSCGRG00001015523	Gm12695 (ENSCGRG00001014021) #12	Nfia (ENSCGRG00001000754) #13	Tm2d1 (ENSCGRG00001017276) #14	ENSCGRG00001014726	Patj (ENSCGRG00001024524) #15	L1td1 (ENSCGRG00001024238)	Kank4 (ENSCGRG00001023583) #17	Usp1 (ENSCGRG00001018963) #18	Angptl3 (ENSCGRG00001024053) #19	Dock7 (ENSCGRG00001017762) #20	ENSCGRG00001002780	Atg4c (ENSCGRG00001000630) #21	ENSCGRG00001002098	Foxd3 (ENSCGRG00001009393) #22	Alg6 (ENSCGRG00001024513) #23	Itgb3bp (ENSCGRG00001023317) #25	Efcab7 (ENSCGRG00001013291) #26	Pgm1 (ENSCGRG00001024185) #27	Ror1 (ENSCGRG00001015667) #28	ENSCGRG00001023231	Ube2u (ENSCGRG00001024744) #29	Cachd1 (ENSCGRG00001024125) #30	Raver2 (ENSCGRG00001011852) #31	Jak1 (ENSCGRG00001008727) #32	ENSCGRG00001003307 #37	ENSCGRG00001024354	Dnajc6 (ENSCGRG00001021227)	Leprot (ENSCGRG00001018267)	Lepr (ENSCGRG00001013297)
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.b #11	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.a.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.g.a #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Prairie vole	MODERN SPECIES	1	ENSMOCG00000005805 #11	Cyp2j6 (ENSMOCG00000018597)	ENSMOCG00000010318	Gm12695 (ENSMOCG00000013607) #12	Nfia (ENSMOCG00000007715) #13	ENSMOCG00000008446	Tm2d1 (ENSMOCG00000007667) #14	Patj (ENSMOCG00000020085) #15	L1td1 (ENSMOCG00000007037)	Kank4 (ENSMOCG00000020622) #17	Usp1 (ENSMOCG00000013703) #18	Dock7 (ENSMOCG00000012407) #20	Angptl3 (ENSMOCG00000010506) #19	Atg4c (ENSMOCG00000013316) #21	ENSMOCG00000021953	Foxd3 (ENSMOCG00000003755) #22	Alg6 (ENSMOCG00000007266) #23	Itgb3bp (ENSMOCG00000020964) #25	Efcab7 (ENSMOCG00000005332) #26	Pgm1 (ENSMOCG00000011278) #27	Ror1 (ENSMOCG00000010797) #28	ENSMOCG00000009548	ENSMOCG00000013769 #29	Cachd1 (ENSMOCG00000020004) #30	Raver2 (ENSMOCG00000018087) #31	Jak1 (ENSMOCG00000011865) #32	Ak4 (ENSMOCG00000014444) #37	Dnajc6 (ENSMOCG00000018708)	Leprot (ENSMOCG00000019296)	Lepr (ENSMOCG00000014570)	Pde4b (ENSMOCG00000017467)
Murinae	ANCESTRAL SPECIES	2	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00940000155417.a.a #11	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b	ENSGT00940000155190
Mus	ANCESTRAL SPECIES	3	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00860000136189	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00860000135728	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a
Mus_A	ANCESTRAL SPECIES	3	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00860000136189	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00860000135728	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a
Mus_B	ANCESTRAL SPECIES	5	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00860000136189	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00860000135728	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a
Mouse	MODERN SPECIES	13	Cyp2j6 (ENSMUSG00000052914)	Cyp2j9 (ENSMUSG00000015224) #11	Cyp2j5 (ENSMUSG00000052520)	Gm12695 (ENSMUSG00000078639) #12	E130114P18Rik (ENSMUSG00000048747)	Nfia (ENSMUSG00000028565) #13	Tm2d1 (ENSMUSG00000028563) #14	Patj (ENSMUSG00000061859) #15	L1td1 (ENSMUSG00000087166)	Kank4 (ENSMUSG00000035407) #17	I0C0044D17Rik (ENSMUSG00000073794)	Usp1 (ENSMUSG00000028560) #18	Dock7 (ENSMUSG00000028556) #20	Angptl3 (ENSMUSG00000028553) #19	Atg4c (ENSMUSG00000028550) #21	Foxd3 (ENSMUSG00000067261) #22	Alg6 (ENSMUSG00000073792) #23	Itgb3bp (ENSMUSG00000028549) #25	Efcab7 (ENSMUSG00000073791) #26	Pgm1 (ENSMUSG00000025791) #27	Ror1 (ENSMUSG00000035305) #28	Ube2u (ENSMUSG00000069733) #29	Cachd1 (ENSMUSG00000028532) #30	Raver2 (ENSMUSG00000035275) #31	Jak1 (ENSMUSG00000028530) #32	Ak4 (ENSMUSG00000028527) #37	Dnajc6 (ENSMUSG00000028528)	Leprot (ENSMUSG00000035212)	Lepr (ENSMUSG00000057722)	Pramel17 (ENSMUSG00000035201)	C130073F10Rik (ENSMUSG00000046133)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00950000182879.b.a.a	ENSGT00390000008678 #12	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00860000136189	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00860000136250	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00860000135728	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a
Steppe mouse	MODERN SPECIES	2950										Usp1 (ENSMSIG00000024787) #18	Dock7 (ENSMSIG00000024837) #20	Angptl3 (ENSMSIG00000025902) #19	ENSMSIG00000025935	Atg4c (ENSMSIG00000025942) #21	ENSMSIG00000025964	Foxd3 (ENSMSIG00000025994) #22	Alg6 (ENSMSIG00000026002) #23	ENSMSIG00000026028 #25	Efcab7 (ENSMSIG00000026059) #26	Pgm1 (ENSMSIG00000026111) #27
spretus	MODERN SPECIES	13	Cyp2j5 (MGP_SPRETEiJ_G0027146)	Gm12695 (MGP_SPRETEiJ_G0027147) #12	MGP_SPRETEiJ_G0027148	MGP_SPRETEiJ_G0027149	Nfia (MGP_SPRETEiJ_G0027150) #13	Tm2d1 (MGP_SPRETEiJ_G0027151) #14	Patj (MGP_SPRETEiJ_G0027152) #15	L1td1 (MGP_SPRETEiJ_G0027153)	Kank4 (MGP_SPRETEiJ_G0027154) #17	I0C0044D17Rik (MGP_SPRETEiJ_G0027155)	MGP_SPRETEiJ_G0027156 #18	Dock7 (MGP_SPRETEiJ_G0027157) #20	Angptl3 (MGP_SPRETEiJ_G0027158) #19	Atg4c (MGP_SPRETEiJ_G0027159) #21	MGP_SPRETEiJ_G0027160	Foxd3 (MGP_SPRETEiJ_G0027162) #22	Alg6 (MGP_SPRETEiJ_G0027163) #23	Itgb3bp (MGP_SPRETEiJ_G0027164) #25	Efcab7 (MGP_SPRETEiJ_G0027165) #26	Pgm1 (MGP_SPRETEiJ_G0027166) #27	Ror1 (MGP_SPRETEiJ_G0027167) #28	Ube2u (MGP_SPRETEiJ_G0027168) #29	Cachd1 (MGP_SPRETEiJ_G0027169) #30	MGP_SPRETEiJ_G0027170	Raver2 (MGP_SPRETEiJ_G0027171) #31	Jak1 (MGP_SPRETEiJ_G0027172) #32	Ak4 (MGP_SPRETEiJ_G0027173) #37	Dnajc6 (MGP_SPRETEiJ_G0027174)	Leprot (MGP_SPRETEiJ_G0027175)	Lepr (MGP_SPRETEiJ_G0027176)	MGP_SPRETEiJ_G0027177
Ryukyu mouse	MODERN SPECIES	13	Cyp2j5 (MGP_CAROLIEiJ_G0026178)	Gm12695 (MGP_CAROLIEiJ_G0026179) #12	MGP_CAROLIEiJ_G0026180	MGP_CAROLIEiJ_G0026181	Nfia (MGP_CAROLIEiJ_G0026182) #13	Tm2d1 (MGP_CAROLIEiJ_G0026183) #14	Patj (MGP_CAROLIEiJ_G0026184) #15	L1td1 (MGP_CAROLIEiJ_G0026185)	Kank4 (MGP_CAROLIEiJ_G0026186) #17	MGP_CAROLIEiJ_G0026187	MGP_CAROLIEiJ_G0026188 #18	Dock7 (MGP_CAROLIEiJ_G0026189) #20	Angptl3 (MGP_CAROLIEiJ_G0026190) #19	Atg4c (MGP_CAROLIEiJ_G0026191) #21	MGP_CAROLIEiJ_G0026192	Foxd3 (MGP_CAROLIEiJ_G0026193) #22	Alg6 (MGP_CAROLIEiJ_G0026194) #23	Itgb3bp (MGP_CAROLIEiJ_G0026195) #25	MGP_CAROLIEiJ_G0026196 #26	Pgm1 (MGP_CAROLIEiJ_G0026197) #27	Ror1 (MGP_CAROLIEiJ_G0026198) #28	Ube2u (MGP_CAROLIEiJ_G0026199) #29	Cachd1 (MGP_CAROLIEiJ_G0026200) #30	MGP_CAROLIEiJ_G0026201	Raver2 (MGP_CAROLIEiJ_G0026202) #31	Jak1 (MGP_CAROLIEiJ_G0026203) #32	Ak4 (MGP_CAROLIEiJ_G0026204) #37	Dnajc6 (MGP_CAROLIEiJ_G0026205)	Leprot (MGP_CAROLIEiJ_G0026206)	Lepr (MGP_CAROLIEiJ_G0026207)	MGP_CAROLIEiJ_G0026208
Shrew mouse	MODERN SPECIES	19	Cyp2j5 (MGP_PahariEiJ_G0028515)	Gm12695 (MGP_PahariEiJ_G0028516) #12	MGP_PahariEiJ_G0028517	MGP_PahariEiJ_G0028518	Nfia (MGP_PahariEiJ_G0028519) #13	Tm2d1 (MGP_PahariEiJ_G0028520) #14	Patj (MGP_PahariEiJ_G0028521) #15	L1td1 (MGP_PahariEiJ_G0028522)	Kank4 (MGP_PahariEiJ_G0028523) #17	MGP_PahariEiJ_G0028524	Usp1 (MGP_PahariEiJ_G0028525) #18	Dock7 (MGP_PahariEiJ_G0028526) #20	Angptl3 (MGP_PahariEiJ_G0028527) #19	Atg4c (MGP_PahariEiJ_G0028528) #21	MGP_PahariEiJ_G0028529	Foxd3 (MGP_PahariEiJ_G0028530) #22	Alg6 (MGP_PahariEiJ_G0028531) #23	Itgb3bp (MGP_PahariEiJ_G0028532) #25	MGP_PahariEiJ_G0028533 #26	Pgm1 (MGP_PahariEiJ_G0028534) #27	Ror1 (MGP_PahariEiJ_G0028535) #28	MGP_PahariEiJ_G0028536 #29	Cachd1 (MGP_PahariEiJ_G0028537) #30	MGP_PahariEiJ_G0028538	Raver2 (MGP_PahariEiJ_G0028539) #31	Jak1 (MGP_PahariEiJ_G0028540) #32	Ak4 (MGP_PahariEiJ_G0028541) #37	Dnajc6 (MGP_PahariEiJ_G0028542)	Leprot (MGP_PahariEiJ_G0028543)	Lepr (MGP_PahariEiJ_G0028544)	Pramel17 (MGP_PahariEiJ_G0028545)
Rat	MODERN SPECIES	15	Cyp2j16 (ENSRNOG00000030466)	Cyp2j3 (ENSRNOG00000031004) #11	C5h1orf87 (ENSRNOG00000026169) #12	ENSRNOG00000065127	Nfia (ENSRNOG00000006966) #13	AABR07049329.1 (ENSRNOG00000030107)	Tm2d1 (ENSRNOG00000007527) #14	Patj (ENSRNOG00000007551) #15	L1td1 (ENSRNOG00000050670)	Kank4 (ENSRNOG00000007779) #17	Usp1 (ENSRNOG00000007890) #18	Dock7 (ENSRNOG00000008298) #20	Angptl3 (ENSRNOG00000008638) #19	Atg4c (ENSRNOG00000008767) #21	ENSRNOG00000064901	Foxd3 (ENSRNOG00000066522) #22	Alg6 (ENSRNOG00000009045) #23	Itgb3bp (ENSRNOG00000009116) #25	Efcab7 (ENSRNOG00000009782) #26	Pgm1 (ENSRNOG00000009889) #27	Ror1 (ENSRNOG00000029449) #28	Ube2u (ENSRNOG00000023895) #29	Cachd1 (ENSRNOG00000010514) #30	Raver2 (ENSRNOG00000023812) #31	Jak1 (ENSRNOG00000011157) #32	Ak4 (ENSRNOG00000045738) #37	Dnajc6 (ENSRNOG00000052887)	Leprot (ENSRNOG00000050849)	Lepr (ENSRNOG00000023664)	ENSRNOG00000069037	ENSRNOG00000069853
Lesser Egyptian jerboa	MODERN SPECIES	98	Hook1 (ENSJJAG00000017805) #10	ENSJJAG00000016631 #11	ENSJJAG00000016230	ENSJJAG00000016141	ENSJJAG00000013782	Nfia (ENSJJAG00000012495) #13	ENSJJAG00000010329	Tm2d1 (ENSJJAG00000008343) #14	Patj (ENSJJAG00000022235) #15	ENSJJAG00000019020 #17	Usp1 (ENSJJAG00000017329) #18	Angptl3 (ENSJJAG00000016186) #19	Dock7 (ENSJJAG00000011659) #20	Atg4c (ENSJJAG00000016837) #21	ENSJJAG00000016061	Foxd3 (ENSJJAG00000015766) #22	Alg6 (ENSJJAG00000012437) #23	Efcab7 (ENSJJAG00000011831) #26	Pgm1 (ENSJJAG00000011313) #27	Ror1 (ENSJJAG00000010121) #28	ENSJJAG00000009546	Cachd1 (ENSJJAG00000007547) #30	ENSJJAG00000002474	Raver2 (ENSJJAG00000000374) #31	Jak1 (ENSJJAG00000022247) #32	ENSJJAG00000021591
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Hystricomorpha	ANCESTRAL SPECIES	44							ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Naked mole-rat female	MODERN SPECIES	10							NFIA (ENSHGLG00000017859) #13	TM2D1 (ENSHGLG00000041262) #14	PATJ (ENSHGLG00000014013) #15	ENSHGLG00000035291	ENSHGLG00000013193 #18	ANGPTL3 (ENSHGLG00000018269) #19	DOCK7 (ENSHGLG00000018341) #20	ATG4C (ENSHGLG00000046412) #21	ENSHGLG00000042394	FOXD3 (ENSHGLG00000043312) #22	ALG6 (ENSHGLG00000018273) #23	ENSHGLG00000017596 #25	EFCAB7 (ENSHGLG00000017587) #26	PGM1 (ENSHGLG00000017576) #27	ENSHGLG00000042916	ROR1 (ENSHGLG00000017565) #28	ENSHGLG00000050985	ENSHGLG00000040093	CACHD1 (ENSHGLG00000018425) #30	ENSHGLG00000020728	RAVER2 (ENSHGLG00000018409) #31	JAK1 (ENSHGLG00000018566) #32	ENSHGLG00000038659 #37	ENSHGLG00000047181	DNAJC6 (ENSHGLG00000018610)
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Marmotini	ANCESTRAL SPECIES		ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00910000147158	ENSGT00940000157668 #14	ENSGT00390000009895.i.b.b	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Marmotini_b	ANCESTRAL SPECIES	206											ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a
Squirrel	MODERN SPECIES	292											ENSSTOG00000029567	USP1 (ENSSTOG00000004952) #18	DOCK7 (ENSSTOG00000004984) #20	ANGPTL3 (ENSSTOG00000005071) #19	ATG4C (ENSSTOG00000012443) #21	FOXD3 (ENSSTOG00000023664) #22	ALG6 (ENSSTOG00000024670) #23	ITGB3BP (ENSSTOG00000030642) #25	EFCAB7 (ENSSTOG00000013534) #26	PGM1 (ENSSTOG00000007561) #27	ROR1 (ENSSTOG00000022807) #28	UBE2U (ENSSTOG00000032996) #29	CACHD1 (ENSSTOG00000009821) #30	RAVER2 (ENSSTOG00000009844) #31	JAK1 (ENSSTOG00000012422) #32	ENSSTOG00000023008 #37	DNAJC6 (ENSSTOG00000011000)	LEPROT (ENSSTOG00000021572)
Arctic ground squirrel	MODERN SPECIES	393											ENSUPAG00010015659 #17	USP1 (ENSUPAG00010015671) #18	DOCK7 (ENSUPAG00010015703) #20	ANGPTL3 (ENSUPAG00010016086) #19	ATG4C (ENSUPAG00010016097) #21	FOXD3 (ENSUPAG00010016144) #22	ALG6 (ENSUPAG00010016149) #23	ITGB3BP (ENSUPAG00010016157) #25	EFCAB7 (ENSUPAG00010016164) #26	PGM1 (ENSUPAG00010016171) #27	ROR1 (ENSUPAG00010016191) #28	ENSUPAG00010016215 #29
Eurasian red squirrel	MODERN SPECIES		C1orf87 (ENSSVLG00005003680) #12	NFIA (ENSSVLG00005003823) #13	TM2D1 (ENSSVLG00005003968) #14	PATJ (ENSSVLG00005004098) #15	ENSSVLG00005004503	L1TD1 (ENSSVLG00005004562)	KANK4 (ENSSVLG00005004588) #17	USP1 (ENSSVLG00005004642) #18	DOCK7 (ENSSVLG00005005302) #20	ANGPTL3 (ENSSVLG00005007525) #19	ENSSVLG00005007602	ENSSVLG00005007631	ENSSVLG00005007657	ATG4C (ENSSVLG00005007673) #21	ENSSVLG00005007744	FOXD3 (ENSSVLG00005007758) #22	ENSSVLG00005007774	ALG6 (ENSSVLG00005007804) #23	ITGB3BP (ENSSVLG00005007854) #25	EFCAB7 (ENSSVLG00005007917) #26	ENSSVLG00005008005 #27	ENSSVLG00005008103 #27	ROR1 (ENSSVLG00005008154) #28	ENSSVLG00005008279 #29	CACHD1 (ENSSVLG00005008345) #30	RAVER2 (ENSSVLG00005008615) #31	JAK1 (ENSSVLG00005010529) #32	ENSSVLG00005010609	ENSSVLG00005010636	ENSSVLG00005010654 #37	DNAJC6 (ENSSVLG00005010809)
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT01050000244818	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00940000155417 #11	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185
Elephant	MODERN SPECIES	145	FGGY (ENSLAFG00000013080) #9	HOOK1 (ENSLAFG00000013082) #10	ENSLAFG00000013089 #11	ENSLAFG00000011542 #11	ENSLAFG00000022626 #11	C1orf87 (ENSLAFG00000012275) #12	ENSLAFG00000025943 #13	ENSLAFG00000031230 #13	TM2D1 (ENSLAFG00000013979) #14	PATJ (ENSLAFG00000007961) #15	KANK4 (ENSLAFG00000007974) #17	USP1 (ENSLAFG00000023157) #18	ANGPTL3 (ENSLAFG00000002419) #19	DOCK7 (ENSLAFG00000002410) #20	ATG4C (ENSLAFG00000009126) #21	FOXD3 (ENSLAFG00000003874) #22	ALG6 (ENSLAFG00000002400) #23	EFCAB7 (ENSLAFG00000004814) #26	PGM1 (ENSLAFG00000004820) #27	ROR1 (ENSLAFG00000012631) #28	ENSLAFG00000012636 #29	CACHD1 (ENSLAFG00000009161) #30	RAVER2 (ENSLAFG00000012508) #31	JAK1 (ENSLAFG00000003730) #32	ENSLAFG00000008098 #37	DNAJC6 (ENSLAFG00000008887)	LEPROT (ENSLAFG00000030966)	LEPR (ENSLAFG00000003592)	PDE4B (ENSLAFG00000018427)	SGIP1 (ENSLAFG00000015802)	DYNLT5 (ENSLAFG00000015819)
Xenarthra	ANCESTRAL SPECIES	929																ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27
Armadillo	MODERN SPECIES	541														ENSDNOG00000035243	ENSDNOG00000031189	FOXD3 (ENSDNOG00000005013) #22	ALG6 (ENSDNOG00000046375) #23	ITGB3BP (ENSDNOG00000002813) #25	EFCAB7 (ENSDNOG00000002814) #26	PGM1 (ENSDNOG00000000223) #27	TNIP3 (ENSDNOG00000014154)	NDNF (ENSDNOG00000016592)
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00980000203176	ENSGT00390000018600
Marsupialia_b	ANCESTRAL SPECIES	27	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B.b #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00980000203176	ENSGT00390000018600
Diprotodontia	ANCESTRAL SPECIES	39	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b.c	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B.b #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00980000203176	ENSGT00390000018600
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b.c.a.a	ENSGT00950000182879.b.c.a.b	ENSGT00950000182879.b.d.b	ENSGT00390000008678 #12	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B.b #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00980000203176	ENSGT00390000018600
Common wonbat	MODERN SPECIES	612	HOOK1 (ENSVURG00010007915) #10	ENSVURG00010007958	ENSVURG00010008025	ENSVURG00010008037	C1orf87 (ENSVURG00010008051) #12	ENSVURG00010008072	ENSVURG00010008077	NFIA (ENSVURG00010008122) #13	TM2D1 (ENSVURG00010008155) #14	PATJ (ENSVURG00010008173) #15	KANK4 (ENSVURG00010008241) #17	USP1 (ENSVURG00010008279) #18	DOCK7 (ENSVURG00010008347) #20	ANGPTL3 (ENSVURG00010009124) #19	ATG4C (ENSVURG00010009137) #21	FOXD3 (ENSVURG00010009156) #22	ALG6 (ENSVURG00010009169) #23	ENSVURG00010009182 #25	EFCAB7 (ENSVURG00010009191) #26	PGM1 (ENSVURG00010009200) #27	ROR1 (ENSVURG00010009211) #28	ENSVURG00010009222 #29	ENSVURG00010009231	ENSVURG00010009238
Sauria	ANCESTRAL SPECIES	7	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Archelosauria	ANCESTRAL SPECIES	9	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Aves	ANCESTRAL SPECIES	7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000165489.c	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301.h	ENSGT00940000156301.g
Pink-footed goose	MODERN SPECIES	1	JUN (ENSABRG00000022465) #8	FGGY (ENSABRG00000022463) #9	ENSABRG00000022462	HOOK1 (ENSABRG00000022460) #10	ENSABRG00000022457	ENSABRG00000022451	NFIA (ENSABRG00000022372) #13	TM2D1 (ENSABRG00000022358) #14	PATJ (ENSABRG00000022286) #15	KANK4 (ENSABRG00000022228) #17	USP1 (ENSABRG00000022213) #18	ANGPTL3 (ENSABRG00000022210) #19	DOCK7 (ENSABRG00000019817) #20	ATG4C (ENSABRG00000019118) #21	ENSABRG00000019030	FOXD3 (ENSABRG00000019027) #22	ALG6 (ENSABRG00000018752) #23	ITGB3BP (ENSABRG00000018646) #25	EFCAB7 (ENSABRG00000018592) #26	PGM1 (ENSABRG00000018513) #27	ROR1 (ENSABRG00000018481) #28	CACHD1 (ENSABRG00000018462) #30	RAVER2 (ENSABRG00000018443) #31	JAK1 (ENSABRG00000018398) #32	ENSABRG00000018361 #37	ENSABRG00000018350	DNAJC6 (ENSABRG00000018320)	LEPROT (ENSABRG00000018309)	LEPR (ENSABRG00000018132)	ENSABRG00000018063	PDE4B (ENSABRG00000018047)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j.g.a.b.a	ENSGT00950000182879.b.j.g.a.a	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092.e #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301
Japanese quail	MODERN SPECIES	26	ENSCJPG00005012423	ENSCJPG00005012424	ENSCJPG00005012425	ENSCJPG00005012426	ENSCJPG00005012427	ENSCJPG00005012428	NFIA (ENSCJPG00005012429) #13	TM2D1 (ENSCJPG00005012430) #14	ENSCJPG00005012431 #15	ENSCJPG00005012612 #15	KANK4 (ENSCJPG00005012614) #17	USP1 (ENSCJPG00005012615) #18	DOCK7 (ENSCJPG00005012616) #20	ANGPTL3 (ENSCJPG00005014484) #19	ATG4C (ENSCJPG00005014485) #21	FOXD3 (ENSCJPG00005014487) #22	ALG6 (ENSCJPG00005014488) #23	ENSCJPG00005014489 #25	EFCAB7 (ENSCJPG00005014490) #26	PGM1 (ENSCJPG00005014491) #27	ROR1 (ENSCJPG00005014492) #28	CACHD1 (ENSCJPG00005014494) #30	RAVER2 (ENSCJPG00005014495) #31	JAK1 (ENSCJPG00005014496) #32	ENSCJPG00005014497	ENSCJPG00005014499 #37	DNAJC6 (ENSCJPG00005014500)	LEPROT (ENSCJPG00005014501)	LEPR (ENSCJPG00005014502)	PDE4B (ENSCJPG00005014503)	SGIP1 (ENSCJPG00005014504)
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00950000183297	ENSGT00940000155190	ENSGT00940000156301
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00950000183297	ENSGT00940000155190	ENSGT00940000156301
Great tit	MODERN SPECIES	28	MYSM1 (ENSPMJG00000003434) #7	ENSPMJG00000003443	JUN (ENSPMJG00000003457) #8	FGGY (ENSPMJG00000003463) #9	HOOK1 (ENSPMJG00000003572) #10	ENSPMJG00000003575	ENSPMJG00000003577	NFIA (ENSPMJG00000003614) #13	TM2D1 (ENSPMJG00000003648) #14	PATJ (ENSPMJG00000003672) #15	KANK4 (ENSPMJG00000004587) #17	USP1 (ENSPMJG00000004620) #18	DOCK7 (ENSPMJG00000004670) #20	ANGPTL3 (ENSPMJG00000012329) #19	ATG4C (ENSPMJG00000012330) #21	FOXD3 (ENSPMJG00000012331) #22	ALG6 (ENSPMJG00000012332) #23	ITGB3BP (ENSPMJG00000012333) #25	EFCAB7 (ENSPMJG00000012335) #26	PGM1 (ENSPMJG00000012336) #27	ENSPMJG00000012337	ROR1 (ENSPMJG00000012338) #28	ENSPMJG00000012339	CACHD1 (ENSPMJG00000012341) #30	RAVER2 (ENSPMJG00000012342) #31	JAK1 (ENSPMJG00000012343) #32	ENSPMJG00000012345 #37	DNAJC6 (ENSPMJG00000012346)	LEPROT (ENSPMJG00000012347)	LEPR (ENSPMJG00000012348)	PDE4B (ENSPMJG00000012349)
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i.f	ENSGT00950000182879.b.i.e.a	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT01040000244779	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568.f #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00950000183297	ENSGT00940000155190	ENSGT00940000156301
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i.f	ENSGT00950000182879.b.i.e.a	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT01040000244779	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092.g #32	ENSGT00940000154568.e #37	ENSGT00940000154568.f #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i.e.a	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT01040000244779	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092.g #32	ENSGT00940000154568.e #37	ENSGT00940000154568.f #37	ENSGT00940000158755.o	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301
Zebra finch	MODERN SPECIES	30	FGGY (ENSTGUG00000009695) #9	HOOK1 (ENSTGUG00000009700) #10	ENSTGUG00000009722	ENSTGUG00000016903	ENSTGUG00000013940	ENSTGUG00000027591	NFIA (ENSTGUG00000009745) #13	TM2D1 (ENSTGUG00000009771) #14	PATJ (ENSTGUG00000009783) #15	ENSTGUG00000023986 #17	ENSTGUG00000028251 #17	USP1 (ENSTGUG00000009799) #18	ANGPTL3 (ENSTGUG00000009863) #19	DOCK7 (ENSTGUG00000009812) #20	ATG4C (ENSTGUG00000009870) #21	FOXD3 (ENSTGUG00000028147) #22	ALG6 (ENSTGUG00000009888) #23	ENSTGUG00000009904 #25	ENSTGUG00000009906 #26	PGM1 (ENSTGUG00000018846) #27	ENSTGUG00000009942 #28	ENSTGUG00000028636 #26	ENSTGUG00000009917 #27	ENSTGUG00000023239 #28	ENSTGUG00000009951 #30	ENSTGUG00000009973 #31	ENSTGUG00000029078 #32	ENSTGUG00000010010 #37	ENSTGUG00000010011	ENSTGUG00000029515	ENSTGUG00000021083
Common canary	MODERN SPECIES	9	ENSSCAG00000006585	ENSSCAG00000006589	JUN (ENSSCAG00000006591) #8	FGGY (ENSSCAG00000006601) #9	HOOK1 (ENSSCAG00000006621) #10	ENSSCAG00000006628	ENSSCAG00000006630	NFIA (ENSSCAG00000006651) #13	TM2D1 (ENSSCAG00000006671) #14	PATJ (ENSSCAG00000006679) #15	ENSSCAG00000006704 #17	USP1 (ENSSCAG00000006713) #18	DOCK7 (ENSSCAG00000006729) #20	ANGPTL3 (ENSSCAG00000006769) #19	ATG4C (ENSSCAG00000006779) #21	FOXD3 (ENSSCAG00000006785) #22	ALG6 (ENSSCAG00000006788) #23	ITGB3BP (ENSSCAG00000006795) #25	EFCAB7 (ENSSCAG00000006806) #26	PGM1 (ENSSCAG00000006814) #27	ENSSCAG00000006819	ENSSCAG00000006829 #32	CACHD1 (ENSSCAG00000006858) #30	RAVER2 (ENSSCAG00000006952) #31	ENSSCAG00000006966 #32	ROR1 (ENSSCAG00000006973) #28	ENSSCAG00000006982 #37	DNAJC6 (ENSSCAG00000006996)	LEPROT (ENSSCAG00000007003)	ENSSCAG00000007007 #28	LEPR (ENSSCAG00000007012)
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185
Kakapo	MODERN SPECIES	25	JUN (ENSSHBG00005006800) #8	FGGY (ENSSHBG00005006852) #9	HOOK1 (ENSSHBG00005006978) #10	ENSSHBG00005007019	ENSSHBG00005007065	ENSSHBG00005007084	ENSSHBG00005007122	NFIA (ENSSHBG00005007257) #13	TM2D1 (ENSSHBG00005007443) #14	PATJ (ENSSHBG00005007846) #15	KANK4 (ENSSHBG00005011530) #17	USP1 (ENSSHBG00005011553) #18	DOCK7 (ENSSHBG00005011629) #20	ANGPTL3 (ENSSHBG00005011851) #19	ENSSHBG00005011870 #21	FOXD3 (ENSSHBG00005011888) #22	ALG6 (ENSSHBG00005011906) #23	ITGB3BP (ENSSHBG00005011923) #25	EFCAB7 (ENSSHBG00005011937) #26	PGM1 (ENSSHBG00005011955) #27	ROR1 (ENSSHBG00005011980) #28	CACHD1 (ENSSHBG00005012051) #30	RAVER2 (ENSSHBG00005012257) #31	JAK1 (ENSSHBG00005012461) #32	ENSSHBG00005015430 #37	DNAJC6 (ENSSHBG00005015435)	LEPROT (ENSSHBG00005015439)	LEPR (ENSSHBG00005015452)	ENSSHBG00005015488	ENSSHBG00005015495	SGIP1 (ENSSHBG00005015507)
Golden eagle	MODERN SPECIES	3	JUN (ENSACCG00020017021) #8	FGGY (ENSACCG00020017022) #9	ENSACCG00020017023	HOOK1 (ENSACCG00020017024) #10	ENSACCG00020017025	ENSACCG00020017026	NFIA (ENSACCG00020017028) #13	TM2D1 (ENSACCG00020017029) #14	PATJ (ENSACCG00020017030) #15	KANK4 (ENSACCG00020017031) #17	USP1 (ENSACCG00020017032) #18	DOCK7 (ENSACCG00020017033) #20	ANGPTL3 (ENSACCG00020017034) #19	ATG4C (ENSACCG00020017035) #21	ENSACCG00020017036	FOXD3 (ENSACCG00020017037) #22	ALG6 (ENSACCG00020017038) #23	ITGB3BP (ENSACCG00020017039) #25	EFCAB7 (ENSACCG00020017040) #26	PGM1 (ENSACCG00020017041) #27	ROR1 (ENSACCG00020017042) #28	CACHD1 (ENSACCG00020017043) #30	RAVER2 (ENSACCG00020017044) #31	JAK1 (ENSACCG00020017045) #32	ENSACCG00020017047 #37	DNAJC6 (ENSACCG00020017048)	LEPROT (ENSACCG00020017049)	LEPR (ENSACCG00020017050)	ENSACCG00020017051	ENSACCG00020017052	SGIP1 (ENSACCG00020017053)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668.g #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00950000183297
Testudinidae	ANCESTRAL SPECIES	33	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668.g #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.m.a
Abingdon island giant tortoise	MODERN SPECIES	1894	ENSCABG00000023137	C1orf87 (ENSCABG00000023136) #12	ENSCABG00000023135	PREB (ENSCABG00000023133)	ENSCABG00000023132	NFIA (ENSCABG00000023129) #13	TM2D1 (ENSCABG00000023128) #14	PATJ (ENSCABG00000023127) #15	KANK4 (ENSCABG00000023126) #17	USP1 (ENSCABG00000023125) #18	ENSCABG00000023124 #20	ENSCABG00000023123 #20	ANGPTL3 (ENSCABG00000023122) #19	ENSCABG00000023121 #20	ATG4C (ENSCABG00000023120) #21	FOXD3 (ENSCABG00000023119) #22	ALG6 (ENSCABG00000023118) #23	ENSCABG00000023117 #25	EFCAB7 (ENSCABG00000023116) #26	PGM1 (ENSCABG00000023115) #27	ROR1 (ENSCABG00000023113) #28	UBE2U (ENSCABG00000023112) #29	CACHD1 (ENSCABG00000023111) #30
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005020776	ENSGEVG00005020762	ENSGEVG00005020753	ENSGEVG00005020736	ENSGEVG00005020724	C1orf87 (ENSGEVG00005020715) #12	ENSGEVG00005020704	NFIA (ENSGEVG00005020696) #13	TM2D1 (ENSGEVG00005020691) #14	PATJ (ENSGEVG00005020682) #15	ENSGEVG00005020678 #17	USP1 (ENSGEVG00005020673) #18	ANGPTL3 (ENSGEVG00005020668) #19	DOCK7 (ENSGEVG00005016039) #20	ATG4C (ENSGEVG00005013428) #21	FOXD3 (ENSGEVG00005013403) #22	ALG6 (ENSGEVG00005013369) #23	ITGB3BP (ENSGEVG00005013329) #25	EFCAB7 (ENSGEVG00005013265) #26	PGM1 (ENSGEVG00005013164) #27	ROR1 (ENSGEVG00005012980) #28	UBE2U (ENSGEVG00005012901) #29	CACHD1 (ENSGEVG00005011807) #30	RAVER2 (ENSGEVG00005011582) #31	JAK1 (ENSGEVG00005011508) #32	ENSGEVG00005011475 #37	DNAJC6 (ENSGEVG00005008265)	LEPROT (ENSGEVG00005007695)	LEPR (ENSGEVG00005007099)	ENSGEVG00005006958	ENSGEVG00005006928
Emydidae	ANCESTRAL SPECIES	22	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668.g #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000156746 #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00950000183297
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	98					ENSTMTG00000021677	ENSTMTG00000021657	ENSTMTG00000021509 #13	ENSTMTG00000021463 #14	ENSTMTG00000021443 #15	ENSTMTG00000021437 #15	ENSTMTG00000021425 #17	ENSTMTG00000021413 #18	ENSTMTG00000021400 #19	ENSTMTG00000017136 #20	ENSTMTG00000016577 #21	ENSTMTG00000016568 #22	ENSTMTG00000016554 #23	ENSTMTG00000016541 #25	ENSTMTG00000016529 #26	ENSTMTG00000016515 #27	ENSTMTG00000016476 #28	ENSTMTG00000016442 #29	ENSTMTG00000016205 #30	ENSTMTG00000016139 #31	ENSTMTG00000016096 #32	ENSTMTG00000016067 #37	ENSTMTG00000013045	ENSTMTG00000012656	ENSTMTG00000011103	ENSTMTG00000010870	ENSTMTG00000010706
Three-toed box turtle	MODERN SPECIES	97						ENSTMTG00000022302	ENSTMTG00000022294	ENSTMTG00000022290 #13	ENSTMTG00000022285 #14	ENSTMTG00000022270 #15	ENSTMTG00000022254 #17	ENSTMTG00000022250 #18	ENSTMTG00000022246 #19	ENSTMTG00000021690 #20	ENSTMTG00000021554 #21	ENSTMTG00000021552 #22	ENSTMTG00000021547 #23	ENSTMTG00000021539 #25	ENSTMTG00000021518 #26	ENSTMTG00000021506 #27	ENSTMTG00000021497 #28	ENSTMTG00000021492 #29	ENSTMTG00000021422 #30	ENSTMTG00000021399 #31	ENSTMTG00000021386 #32	ENSTMTG00000021372 #37	ENSTMTG00000020247	ENSTMTG00000020147	ENSTMTG00000019457	ENSTMTG00000019383	ENSTMTG00000018590
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Episquamata	ANCESTRAL SPECIES	1	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00390000008678 #12	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000003749	ENSPMRG00000003732	ENSPMRG00000015689	ENSPMRG00000015680	ENSPMRG00000015664	ENSPMRG00000015652	ENSPMRG00000015533	NFIA (ENSPMRG00000015474) #13	TM2D1 (ENSPMRG00000015459) #14	PATJ (ENSPMRG00000015351) #15	KANK4 (ENSPMRG00000015316) #17	USP1 (ENSPMRG00000015310) #18	ANGPTL3 (ENSPMRG00000015301) #19	DOCK7 (ENSPMRG00000011757) #20	ATG4C (ENSPMRG00000011290) #21	FOXD3 (ENSPMRG00000011286) #22	ENSPMRG00000011282	ALG6 (ENSPMRG00000011277) #23	ITGB3BP (ENSPMRG00000011267) #25	EFCAB7 (ENSPMRG00000011260) #26	PGM1 (ENSPMRG00000011249) #27	ENSPMRG00000011246	ROR1 (ENSPMRG00000011243) #28	ENSPMRG00000011232 #29	ENSPMRG00000011227	CACHD1 (ENSPMRG00000011156) #30	ENSPMRG00000011133	RAVER2 (ENSPMRG00000011111) #31	JAK1 (ENSPMRG00000011088) #32	ENSPMRG00000011079 #37	DNAJC6 (ENSPMRG00000011049)
Argentine black and white tegu	MODERN SPECIES	31	ENSSMRG00000018045	ENSSMRG00000018047	C1orf87 (ENSSMRG00000018049) #12	ENSSMRG00000018050	ENSSMRG00000018056 #13	ENSSMRG00000018057 #13	ENSSMRG00000018058	TM2D1 (ENSSMRG00000018059) #14	PATJ (ENSSMRG00000018061) #15	ENSSMRG00000018263	KANK4 (ENSSMRG00000018264) #17	USP1 (ENSSMRG00000018265) #18	DOCK7 (ENSSMRG00000018266) #20	ANGPTL3 (ENSSMRG00000018270) #19	ATG4C (ENSSMRG00000018271) #21	FOXD3 (ENSSMRG00000018273) #22	ALG6 (ENSSMRG00000018274) #23	ITGB3BP (ENSSMRG00000018275) #25	EFCAB7 (ENSSMRG00000018276) #26	PGM1 (ENSSMRG00000018277) #27	ROR1 (ENSSMRG00000018278) #28	CACHD1 (ENSSMRG00000018279) #30	RAVER2 (ENSSMRG00000018280) #31	JAK1 (ENSSMRG00000018281) #32	ENSSMRG00000019953 #37	DNAJC6 (ENSSMRG00000019954)	LEPROT (ENSSMRG00000019955)	LEPR (ENSSMRG00000019956)	ENSSMRG00000019957	PDE4B (ENSSMRG00000019958)	SGIP1 (ENSSMRG00000019959)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136.bb.b #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185
Indian cobra	MODERN SPECIES	2	MYSM1 (ENSNNAG00000010769) #7	ENSNNAG00000010866	JUN (ENSNNAG00000011183) #8	FGGY (ENSNNAG00000011194) #9	ENSNNAG00000011231	HOOK1 (ENSNNAG00000011247) #10	ENSNNAG00000011318 #13	ENSNNAG00000011408 #13	TM2D1 (ENSNNAG00000011456) #14	PATJ (ENSNNAG00000011539) #15	KANK4 (ENSNNAG00000011718) #17	USP1 (ENSNNAG00000011759) #18	DOCK7 (ENSNNAG00000012070) #20	ANGPTL3 (ENSNNAG00000016124) #19	ATG4C (ENSNNAG00000016146) #21	FOXD3 (ENSNNAG00000016171) #22	ALG6 (ENSNNAG00000016183) #23	ENSNNAG00000016201 #25	PGM1 (ENSNNAG00000016220) #27	ROR1 (ENSNNAG00000016256) #28	CACHD1 (ENSNNAG00000016329) #30	RAVER2 (ENSNNAG00000016550) #31	ENSNNAG00000016582 #32	ENSNNAG00000016668 #32	ENSNNAG00000017585	ENSNNAG00000017594 #37	DNAJC6 (ENSNNAG00000017647)	LEPROT (ENSNNAG00000017872)	LEPR (ENSNNAG00000017874)	ENSNNAG00000017880	PDE4B (ENSNNAG00000017882)
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136.bb.a #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185	ENSGT01030000236550
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000018245.d	ENSGT00940000157721 #7	ENSGT00940000165489	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136.bb.a #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000004336 #25	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185	ENSGT01030000236550
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	107								ENSPTXG00000018638 #13	ENSPTXG00000018639 #14	ENSPTXG00000018640 #15	ENSPTXG00000018641 #17	ENSPTXG00000018642 #18	ENSPTXG00000018658 #20	ENSPTXG00000018828 #19	ENSPTXG00000018829 #21	ENSPTXG00000018830 #22	ENSPTXG00000018832 #23	ENSPTXG00000018834 #27	ENSPTXG00000018836 #28	ENSPTXG00000018838 #30	ENSPTXG00000018841 #31	ENSPTXG00000018843 #32	ENSPTXG00000018846 #37	ENSPTXG00000018854	ENSPTXG00000018867	ENSPTXG00000018868	ENSPTXG00000018869
Eastern brown snake	MODERN SPECIES	109								ENSPTXG00000018924 #13	ENSPTXG00000018925 #14	ENSPTXG00000018926 #15	ENSPTXG00000018927 #17	ENSPTXG00000018928 #18	ENSPTXG00000018929 #20	ENSPTXG00000018930 #19	ENSPTXG00000018931 #21	ENSPTXG00000018932 #22	ENSPTXG00000018933 #23	ENSPTXG00000018934	ENSPTXG00000018935 #27	ENSPTXG00000018936 #28	ENSPTXG00000012470 #30	ENSPTXG00000012478 #31	ENSPTXG00000012489 #32	ENSPTXG00000012498 #37	ENSPTXG00000012522	ENSPTXG00000013555	ENSPTXG00000013559	ENSPTXG00000013633
Mainland tiger snake	MODERN SPECIES	13	ENSNSUG00000001566 #9	ENSNSUG00000001575 #9	ENSNSUG00000001582	NFIA (ENSNSUG00000001588) #13	TM2D1 (ENSNSUG00000001608) #14	ENSNSUG00000001619 #15	ENSNSUG00000001645 #15	KANK4 (ENSNSUG00000001661) #17	USP1 (ENSNSUG00000001666) #18	ENSNSUG00000001668 #20	ENSNSUG00000001670 #20	ENSNSUG00000001673 #20	ANGPTL3 (ENSNSUG00000001680) #19	ATG4C (ENSNSUG00000001683) #21	ENSNSUG00000001687	FOXD3 (ENSNSUG00000001688) #22	ALG6 (ENSNSUG00000001690) #23	ITGB3BP (ENSNSUG00000001806) #25	PGM1 (ENSNSUG00000001809) #27	ROR1 (ENSNSUG00000001815) #28	CACHD1 (ENSNSUG00000001826) #30	RAVER2 (ENSNSUG00000001829) #31	JAK1 (ENSNSUG00000001845) #32	ENSNSUG00000003203 #37	DNAJC6 (ENSNSUG00000003207)	LEPROT (ENSNSUG00000003416)	ENSNSUG00000003427	ENSNSUG00000003428	ENSNSUG00000003430	ENSNSUG00000003431	SGIP1 (ENSNSUG00000003440)
Blue-lipped sea krait	MODERN SPECIES	544																FOXD3 (ENSLLTG00000004946) #22	ALG6 (ENSLLTG00000004921) #23	ITGB3BP (ENSLLTG00000004897) #25	PGM1 (ENSLLTG00000004885) #27
Anura	ANCESTRAL SPECIES	17	ENSGT00940000162061 #8	ENSGT01000000214434.F #9	ENSGT00390000017123.a	ENSGT00940000159251 #10	ENSGT00550000074827	ENSGT00940000171673	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a #13	ENSGT00940000157668 #14	ENSGT00940000155136 #15	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00940000155190	ENSGT00940000156301	ENSGT00940000160185
Leishan spiny toad	MODERN SPECIES	11	SCP2 (ENSLLEG00000030837)	PODN (ENSLLEG00000030852)	ENSLLEG00000030859	SLC1A7 (ENSLLEG00000030863)	ENSLLEG00000030878	CPT2 (ENSLLEG00000014337)	CZIB (ENSLLEG00000014428)	MAGOH (ENSLLEG00000014509)	ENSLLEG00000014584	ENSLLEG00000014606	ENSLLEG00000014759	USP1 (ENSLLEG00000014805) #18	DOCK7 (ENSLLEG00000014902) #20	ANGPTL3 (ENSLLEG00000015522) #19	ATG4C (ENSLLEG00000015620) #21	FOXD3 (ENSLLEG00000015938) #22	ALG6 (ENSLLEG00000015973) #23	EFCAB7 (ENSLLEG00000016546) #26	PGM1 (ENSLLEG00000016726) #27	ROR1 (ENSLLEG00000017315) #28	UBE2U (ENSLLEG00000017423) #29	CACHD1 (ENSLLEG00000017578) #30	ENSLLEG00000018275	RAVER2 (ENSLLEG00000018414) #31	JAK1 (ENSLLEG00000018907) #32	ENSLLEG00000019174	ENSLLEG00000019202 #37	DNAJC6 (ENSLLEG00000019316)	LEPR (ENSLLEG00000020168)	ENSLLEG00000020368	ENSLLEG00000020419
Frog	MODERN SPECIES	4	jun (ENSXETG00000046489) #8	ENSXETG00000044506	fggy (ENSXETG00000008887) #9	XB5864909 [provisional:rnf170] (ENSXETG00000032865)	hook1 (ENSXETG00000008880) #10	psma4 (ENSXETG00000008877)	frem1l (ENSXETG00000008875)	nfia (ENSXETG00000008871) #13	tm2d1 (ENSXETG00000036959) #14	patj (ENSXETG00000030379) #15	ENSXETG00000037245 #17	angptl3 (ENSXETG00000010849) #19	dock7 (ENSXETG00000010841) #20	atg4c (ENSXETG00000010838) #21	ENSXETG00000042244	foxd3 (ENSXETG00000010836) #22	alg6 (ENSXETG00000010835) #23	efcab7 (ENSXETG00000010833) #26	ror1 (ENSXETG00000034676) #28	ube2u (ENSXETG00000035592) #29	ENSXETG00000041559	cachd1 (ENSXETG00000020410) #30	raver2 (ENSXETG00000020406) #31	jak1 (ENSXETG00000020396) #32	ak4 (ENSXETG00000020392) #37	dnajc6 (ENSXETG00000020390)	leprot (ENSXETG00000025603)	ENSXETG00000047321	lepr (ENSXETG00000020387)	ENSXETG00000048079	pde4b (ENSXETG00000020374)
Coelacanth	MODERN SPECIES	559																FOXD3 (ENSLACG00000015487) #22	ALG6 (ENSLACG00000015231) #23	ENSLACG00000022377	EFCAB7 (ENSLACG00000014919) #26	ENSLACG00000014383	ENSLACG00000014117	KIAA0040 (ENSLACG00000022329)	ENSLACG00000013250	ENSLACG00000012743	COP1 (ENSLACG00000011141)	TNR (ENSLACG00000000489)
Actinopterygii	ANCESTRAL SPECIES	8	ENSGT00940000173535	ENSGT00940000166725	ENSGT00390000003015	ENSGT01030000235036	ENSGT00620000088018	ENSGT00390000006224	ENSGT00940000175705	ENSGT00390000014984	ENSGT00940000161912	ENSGT00940000154819.a.a	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301
Reedfish	MODERN SPECIES	1	ENSECRG00000007940	ENSECRG00000007945	ENSECRG00000007951	ENSECRG00000007958	ENSECRG00000007965	ENSECRG00000007972	ebna1bp2 (ENSECRG00000007977)	cfap144 (ENSECRG00000007989)	ENSECRG00000007997	lrp8 (ENSECRG00000008063)	KANK4 (ENSECRG00000008452) #17	usp1 (ENSECRG00000008474) #18	DOCK7 (ENSECRG00000008573) #20	angptl3 (ENSECRG00000008852) #19	atg4c (ENSECRG00000008865) #21	foxd3 (ENSECRG00000008882) #22	alg6 (ENSECRG00000008901) #23	efcab7 (ENSECRG00000008920) #26	PGM1 (ENSECRG00000008950) #27	ROR1 (ENSECRG00000008992) #28	UBE2U (ENSECRG00000009018) #29	CACHD1 (ENSECRG00000009038) #30	RAVER2 (ENSECRG00000009085) #31	jak1 (ENSECRG00000009148) #32	ak4 (ENSECRG00000009230) #37	DNAJC6 (ENSECRG00000009249)	LEPROT (ENSECRG00000009275)	lepr (ENSECRG00000009304)	PDE4B (ENSECRG00000009352)	SGIP1 (ENSECRG00000009386)	dynlt5 (ENSECRG00000009416)
Neopterygii	ANCESTRAL SPECIES	8	ENSGT00940000173535	ENSGT00940000166725	ENSGT00390000003015	ENSGT01030000235036	ENSGT00620000088018	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000161912	ENSGT00940000154819.a.a	ENSGT00940000158468 #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746 #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000162256 #29	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301
Spotted gar	MODERN SPECIES	648	tie1 (ENSLOCG00000006350)	si:ch73-185c24.2 (ENSLOCG00000006366)	ap1m3 (ENSLOCG00000006392)	tmem125b (ENSLOCG00000017739)	CFAP57 (ENSLOCG00000006408)	ebna1bp2 (ENSLOCG00000006438)	cfap144 (ENSLOCG00000006457)	ENSLOCG00000006480	ENSLOCG00000006493	lrp8 (ENSLOCG00000006506)	KANK4 (ENSLOCG00000006525) #17	usp1 (ENSLOCG00000006551) #18	DOCK7 (ENSLOCG00000006561) #20	angptl3 (ENSLOCG00000006610) #19	atg4c (ENSLOCG00000006628) #21	foxd3 (ENSLOCG00000017740) #22	alg6 (ENSLOCG00000006645) #23	PGM1 (ENSLOCG00000006665) #27	ROR1 (ENSLOCG00000006711) #28	UBE2U (ENSLOCG00000006744) #29	CACHD1 (ENSLOCG00000006750) #30	RAVER2 (ENSLOCG00000006773) #31	jak1 (ENSLOCG00000006806) #32	ak4 (ENSLOCG00000006837) #37	DNAJC6 (ENSLOCG00000006853)	LEPROT (ENSLOCG00000006886)	lepr (ENSLOCG00000006903)	PDE4B (ENSLOCG00000006922)	SGIP1 (ENSLOCG00000006955)	dynlt5 (ENSLOCG00000006973)	insl5a (ENSLOCG00000006990)
Osteoglossocephalai	ANCESTRAL SPECIES	9	ENSGT00390000003015.d	ENSGT01030000235036	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00620000088018	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000155542.b #27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00390000006503.a	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190	ENSGT00940000156301.a.a
Osteoglossiformes	ANCESTRAL SPECIES	5	ENSGT00940000157693	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B.a #28	ENSGT00940000157568.c #30	ENSGT00940000158648.c #31	ENSGT00940000157092.q #32	ENSGT00940000154568 #37	ENSGT00940000158755.a	ENSGT00390000006503.a	ENSGT00940000156301.a.a	ENSGT00940000174981.a	ENSGT00940000156209	ENSGT01030000234573.A.b.a.b	ENSGT00940000159829.d
Asian bonytongue	MODERN SPECIES	24	orc1 (ENSSFOG00015022510)	mpl (ENSSFOG00015022525)	tie1 (ENSSFOG00015022550)	C1orf210 (ENSSFOG00015027837)	ap1m3 (ENSSFOG00015000090)	TMEM125 (ENSSFOG00015000159)	ebna1bp2 (ENSSFOG00015000181)	cfap144 (ENSSFOG00015024258)	dmrt2b (ENSSFOG00015000463)	lrp8 (ENSSFOG00015000503)	KANK4 (ENSSFOG00015000716) #17	usp1 (ENSSFOG00015000790) #18	DOCK7 (ENSSFOG00015000804) #20	angptl3 (ENSSFOG00015000996) #19	atg4c (ENSSFOG00015001009) #21	foxd3 (ENSSFOG00015029744) #22	alg6 (ENSSFOG00015001059) #23	efcab7 (ENSSFOG00015001084) #26	ROR1 (ENSSFOG00015001121) #28	CACHD1 (ENSSFOG00015001180) #30	RAVER2 (ENSSFOG00015001335) #31	jak1 (ENSSFOG00015001377) #32	AK3 (ENSSFOG00015001475) #37	DNAJC6 (ENSSFOG00015001526)	lepr (ENSSFOG00015001625)	ENSSFOG00015030854	PDE4B (ENSSFOG00015001634)	SGIP1 (ENSSFOG00015031180)	ENSSFOG00015001713	dnai4 (ENSSFOG00015001726)	MIER1 (ENSSFOG00015001746)
Clupeocephala	ANCESTRAL SPECIES	108	ENSGT00390000003015.d	ENSGT01030000235036	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00620000088018	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Otomorpha	ANCESTRAL SPECIES	281											ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT00940000156539	ENSGT00390000016650.c.a	ENSGT00940000167241	ENSGT00390000016650.d	ENSGT00420000029753.b	ENSGT00390000015318.b	ENSGT00940000155705.b	ENSGT00940000156259.a.a	ENSGT00940000158851	ENSGT00530000063632.A	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000156209	ENSGT00940000155531.a.a
Atlantic herring	MODERN SPECIES	1	GPR52 (ENSCHAG00000017423)	si:ch211-264f5.2 (ENSCHAG00000017439)	akr1a1b (ENSCHAG00000017463)	ENSCHAG00000017729	GPBP1L1 (ENSCHAG00000017735)	tmem69 (ENSCHAG00000017802)	MAST2 (ENSCHAG00000017819)	PIK3R3 (ENSCHAG00000019432)	TSPAN1 (ENSCHAG00000020051)	pomgnt1 (ENSCHAG00000020111)	ENSCHAG00000020243 #17	usp1 (ENSCHAG00000020250) #18	DOCK7 (ENSCHAG00000020416) #20	angptl3 (ENSCHAG00000025338) #19	atg4c (ENSCHAG00000025344) #21	foxd3 (ENSCHAG00000025351) #22	alg6 (ENSCHAG00000025361) #23	pgm1 (ENSCHAG00000025389) ##27	ENSCHAG00000025576	ENSCHAG00000025583	CACHD1 (ENSCHAG00000025608) #30	ENSCHAG00000025843	jak1 (ENSCHAG00000001469) #32	ak4 (ENSCHAG00000006259) #37	DNAJC6 (ENSCHAG00000006306)	lepr (ENSCHAG00000006835)	PDE4B (ENSCHAG00000007355)	ENSCHAG00000008011	SGIP1 (ENSCHAG00000008030)	ENSCHAG00000008117	dnai4 (ENSCHAG00000008129)
Denticle herring	MODERN SPECIES	4	akr1a1b (ENSDCDG00000027469)	nasp (ENSDCDG00000027480)	ENSDCDG00000027481	GPBP1L1 (ENSDCDG00000027482)	tmem69 (ENSDCDG00000027488)	MAST2 (ENSDCDG00000027559)	PIK3R3 (ENSDCDG00000029931)	TSPAN1 (ENSDCDG00000030597)	pomgnt1 (ENSDCDG00000030604)	ENSDCDG00000030618 #17	ENSDCDG00000030619 #17	usp1 (ENSDCDG00000030622) #18	DOCK7 (ENSDCDG00000030725) #20	angptl3 (ENSDCDG00000033204) #19	atg4c (ENSDCDG00000033205) #21	foxd3 (ENSDCDG00000033208) #22	alg6 (ENSDCDG00000033209) #23	efcab7 (ENSDCDG00000033215) #26	pgm1 (ENSDCDG00000033253) ##27	ROR1 (ENSDCDG00000033263) #28	CACHD1 (ENSDCDG00000033270) #30	RAVER2 (ENSDCDG00000033278) #31	jak1 (ENSDCDG00000033348) #32	ak4 (ENSDCDG00000034327) #37	DNAJC6 (ENSDCDG00000034333)	lepr (ENSDCDG00000034343)	PDE4B (ENSDCDG00000034434)	SGIP1 (ENSDCDG00000035047)	dnai4 (ENSDCDG00000035050)	PIK3CA (ENSDCDG00000035054)	ZMAT3 (ENSDCDG00000035057)
Otophysi	ANCESTRAL SPECIES	32						ENSGT00940000157362.d	ENSGT00940000166873	ENSGT00940000164912	ENSGT00940000161068	ENSGT00940000162747	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000155705.b	ENSGT00940000156259.a.a	ENSGT00940000156259.a.b.a	ENSGT00940000158851	ENSGT00530000063632.A.l	ENSGT00940000157362.d	ENSGT00940000166873	ENSGT00940000164912	ENSGT00940000161068	ENSGT00940000162747	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00800000125311	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00950000183297	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	12	ENSGT00390000015318.b.b	ENSGT00940000155705.b.w	ENSGT00940000156259.a.b.a.a	ENSGT00940000158851.f	ENSGT00530000063632.A.l	ENSGT00940000157362.d.a	ENSGT00940000166873.b	ENSGT00940000164912.c	ENSGT00940000161068.d	ENSGT00940000162747.a	ENSGT00940000158468.a.b.b #17	ENSGT00910000144243.n #18	ENSGT00940000156746.a.b #19	ENSGT00940000155661.z #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b.e #22	ENSGT00940000153733.B.h #23	ENSGT00800000125311	ENSGT00390000015466 #26	ENSGT00940000155542.a.a ##27	ENSGT00940000153947.B.k #28	ENSGT00940000157568.f #30	ENSGT00940000158648.e #31	ENSGT00940000157092.y.a #32	ENSGT00940000154568.eb #37	ENSGT00940000158755.e	ENSGT00730000111209.p	ENSGT00950000183297	ENSGT00940000155190.bb.a.j	ENSGT00940000156301.a.a.a	ENSGT00940000174981
Goldfish	MODERN SPECIES	46	tmem69 (ENSCARG00000026223)	MAST2 (ENSCARG00000024525)	pik3r3b (ENSCARG00000022931)	TSPAN1 (ENSCARG00000022859)	pomgnt1 (ENSCARG00000022804)	ENSCARG00000020835	ENSCARG00000020765	ENSCARG00000020758	ENSCARG00000020749	mafaa (ENSCARG00000020741)	KANK4 (ENSCARG00000020714) #17	usp1 (ENSCARG00000020695) #18	angptl3 (ENSCARG00000020677) #19	DOCK7 (ENSCARG00000004893) #20	atg4c (ENSCARG00000003780) #21	foxd3 (ENSCARG00000003775) #22	alg6 (ENSCARG00000003754) #23	pgm1 (ENSCARG00000003628) ##27	ROR1 (ENSCARG00000003609) #28	CACHD1 (ENSCARG00000003587) #30	RAVER2 (ENSCARG00000003573) #31	jak1 (ENSCARG00000003433) #32	ENSCARG00000003400	ak4 (ENSCARG00000003395) #37	DNAJC6 (ENSCARG00000003386)	lepr (ENSCARG00000003053)	PDE4B (ENSCARG00000001737)	ENSCARG00000001593	SGIP1 (ENSCARG00000001532)	ENSCARG00000001526	dnai4 (ENSCARG00000001506)
Cyprininae_a	ANCESTRAL SPECIES	23	ENSGT00390000015318.b.b	ENSGT00940000155705.b.w	ENSGT00940000156259.a.b.a.a	ENSGT00940000158851.f	ENSGT00530000063632.A.l	ENSGT00940000157362.d.a	ENSGT00940000166873.b	ENSGT00940000164912.c	ENSGT00940000161068.d	ENSGT00940000162747.a	ENSGT00940000158468.a.b.b #17	ENSGT00910000144243.n #18	ENSGT00940000156746.a.b #19	ENSGT00940000155661.z #20	ENSGT00530000063000.a.a.a.a #21	ENSGT00940000161645.b.e #22	ENSGT00940000153733.B.h #23	ENSGT00800000125311	ENSGT00390000015466.a #26	ENSGT00940000155542.a.a ##27	ENSGT00940000153947.B.k #28	ENSGT00940000157568.f #30	ENSGT00940000158648.e #31	ENSGT00940000157092.y.a #32	ENSGT00940000154568.eb #37	ENSGT00940000158755.e	ENSGT00730000111209.p	ENSGT00950000183297	ENSGT00940000155190.bb.a.j	ENSGT00940000156301.a.a.a	ENSGT00940000156209.r
Common carp reference	MODERN SPECIES	10	tmem69 (ENSCCRG00000031568)	MAST2 (ENSCCRG00000023142)	pik3r3b (ENSCCRG00000042403)	TSPAN1 (ENSCCRG00000003757)	pomgnt1 (ENSCCRG00000003779)	ENSCCRG00000051645	ENSCCRG00000019398	ENSCCRG00000031015	ENSCCRG00000031020	mafaa (ENSCCRG00000057341)	KANK4 (ENSCCRG00000065274) #17	usp1 (ENSCCRG00000053751) #18	DOCK7 (ENSCCRG00000000866) #20	angptl3 (ENSCCRG00000046383) #19	atg4c (ENSCCRG00000078388) #21	foxd3 (ENSCCRG00000082276) #22	alg6 (ENSCCRG00000042234) #23	itgb3bp (ENSCCRG00000053175)	efcab7 (ENSCCRG00000004845) #26	pgm1 (ENSCCRG00000079082) ##27	ROR1 (ENSCCRG00000056661) #28	CACHD1 (ENSCCRG00000060884) #30	RAVER2 (ENSCCRG00000018701) #31	jak1 (ENSCCRG00000021967) #32	ak4 (ENSCCRG00000033741) #37	DNAJC6 (ENSCCRG00000007720)	lepr (ENSCCRG00000007700)	PDE4B (ENSCCRG00000081716)	SGIP1 (ENSCCRG00000053959)	dnai4 (ENSCCRG00000023324)	pars2 (ENSCCRG00000077762)
Golden-line barbel	MODERN SPECIES	571											KANK4 (ENSSGRG00000015457) #17	usp1 (ENSSGRG00000015456) #18	angptl3 (ENSSGRG00000015454) #19	DOCK7 (ENSSGRG00000014562) #20	atg4c (ENSSGRG00000014435) #21	foxd3 (ENSSGRG00000014433) #22	alg6 (ENSSGRG00000014266) #23	efcab7 (ENSSGRG00000014047) #26	ROR1 (ENSSGRG00000014035) #28	CACHD1 (ENSSGRG00000013937) #30	RAVER2 (ENSSGRG00000013934) #31	jak1 (ENSSGRG00000010133) #32
Cyprininae	ANCESTRAL SPECIES	41												ENSGT00940000158468.a.b.a #17	ENSGT00910000144243.m #18	ENSGT00940000156746.a.a #19	ENSGT00940000155661.y #20	ENSGT00940000161645.b.f #22	ENSGT00940000153733.B.g #23	ENSGT00940000155542.a.b ##27	ENSGT00940000153947.B.l #28	ENSGT00940000157568.e #30	ENSGT00940000158648.f #31	ENSGT00940000157092.y.b #32	ENSGT00940000154568.db #37	ENSGT00940000158755.f	ENSGT00730000111209.o	ENSGT00940000155190.bb.a.i	ENSGT00940000156301.a.a.b	ENSGT00940000154396.b.b.a	ENSGT00940000156209.q	ENSGT00390000010922.f	ENSGT00390000007658.a
Goldfish	MODERN SPECIES	24	negr1 (ENSCARG00000021919)	sft2d2a (ENSCARG00000021942)	tmem45a (ENSCARG00000024543)	ENSCARG00000024561	opa1 (ENSCARG00000024716)	her6 (ENSCARG00000029102)	ENSCARG00000029148	ENSCARG00000029162	ENSCARG00000029168	brinp3a.2 (ENSCARG00000029175)	ENSCARG00000029184	KANK4 (ENSCARG00000029194) #17	usp1 (ENSCARG00000029211) #18	DOCK7 (ENSCARG00000029753) #20	angptl3 (ENSCARG00000049322) #19	foxd3 (ENSCARG00000049356) #22	efcab7 (ENSCARG00000049399) #26	ROR1 (ENSCARG00000050251) #28	CACHD1 (ENSCARG00000050340) #30	RAVER2 (ENSCARG00000050820) #31	jak1 (ENSCARG00000051008) #32	ak4 (ENSCARG00000057519) #37	DNAJC6 (ENSCARG00000057535)	lepr (ENSCARG00000057638)	ENSCARG00000058288	PDE4B (ENSCARG00000058317)	ENSCARG00000058778	SGIP1 (ENSCARG00000058810)	insl5a (ENSCARG00000058937)	ENSCARG00000058958	TTC22 (ENSCARG00000058991)
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00390000015318.b.a	ENSGT00940000155705.b.x	ENSGT00940000156259.a.a	ENSGT00940000158851.e	ENSGT00530000063632.A.k	ENSGT00940000157362.d.b	ENSGT00940000166873.a	ENSGT00940000164912.d	ENSGT00940000161068.c	ENSGT00940000162747.b	ENSGT00940000158468.a.b.a #17	ENSGT00910000144243.m #18	ENSGT00940000156746.a.a #19	ENSGT00940000155661.y #20	ENSGT00530000063000.a.a.a.b #21	ENSGT00940000161645.b.f #22	ENSGT00940000153733.B.g #23	ENSGT00390000015466.b #26	ENSGT00940000155542.a.b ##27	ENSGT00940000153947.B.l #28	ENSGT00940000157568.e #30	ENSGT00940000158648.f #31	ENSGT00940000157092.y.b #32	ENSGT00940000154568.db #37	ENSGT00940000158755.f	ENSGT00730000111209.o	ENSGT00940000155190.bb.a.i	ENSGT00940000156301.a.a.b	ENSGT00940000154396.b.b.a	ENSGT00940000156209.q	ENSGT00390000010922.f
Common carp reference	MODERN SPECIES	16	ENSCCRG00000081618	MAST2 (ENSCCRG00000017533)	PIK3R3 (ENSCCRG00000081866)	TSPAN1 (ENSCCRG00000016083)	ENSCCRG00000060227	ENSCCRG00000022353	ENSCCRG00000048999	ENSCCRG00000069853	ENSCCRG00000082490	mafaa (ENSCCRG00000064472)	KANK4 (ENSCCRG00000037459) #17	usp1 (ENSCCRG00000008960) #18	angptl3 (ENSCCRG00000031760) #19	DOCK7 (ENSCCRG00000003567) #20	atg4c (ENSCCRG00000065393) #21	foxd3 (ENSCCRG00000042366) #22	alg6 (ENSCCRG00000004859) #23	efcab7 (ENSCCRG00000077091) #26	pgm1 (ENSCCRG00000073057) ##27	ROR1 (ENSCCRG00000014885) #28	CACHD1 (ENSCCRG00000017861) #30	RAVER2 (ENSCCRG00000045941) #31	ak4 (ENSCCRG00000071599) #37	jak1 (ENSCCRG00000033813) #32	DNAJC6 (ENSCCRG00000033726)	lepr (ENSCCRG00000033711)	PDE4B (ENSCCRG00000022216)	SGIP1 (ENSCCRG00000022192)	insl5a (ENSCCRG00000022189)	dnai4 (ENSCCRG00000081904)	pars2 (ENSCCRG00000060048)
Golden-line barbel	MODERN SPECIES	137								mafaa (ENSSGRG00000023528)	ENSSGRG00000023527 #17	usp1 (ENSSGRG00000023526) #18	mdkb (ENSSGRG00000023525)	angptl3 (ENSSGRG00000023524) #19	DOCK7 (ENSSGRG00000023133) #20	atg4c (ENSSGRG00000022981) #21	ENSSGRG00000022975	foxd3 (ENSSGRG00000022973) #22	alg6 (ENSSGRG00000022972) #23	pgm1 (ENSSGRG00000022805) ##27	ROR1 (ENSSGRG00000022800) #28	CACHD1 (ENSSGRG00000022754) #30	ENSSGRG00000022753 #31	jak1 (ENSSGRG00000018024) #32	ak4 (ENSSGRG00000017992) #37	DNAJC6 (ENSSGRG00000017991)	lepr (ENSSGRG00000017923)	PDE4B (ENSSGRG00000017059)	SGIP1 (ENSSGRG00000017057)	insl5a (ENSSGRG00000017056)	ENSSGRG00000017055	pars2 (ENSSGRG00000017054)	ttc4 (ENSSGRG00000017030)
Zebrafish	MODERN SPECIES	21	MAST2 (ENSDARG00000074311)	pik3r3b (ENSDARG00000034409)	TSPAN1 (ENSDARG00000052027)	pomgnt1 (ENSDARG00000052025)	ENSDARG00000097331	ADCYAP1R1 (ENSDARG00000053724)	ENSDARG00000053708	ENSDARG00000090153	ENSDARG00000090751	mafaa (ENSDARG00000044155)	KANK4 (ENSDARG00000059473) #17	usp1 (ENSDARG00000056414) #18	angptl3 (ENSDARG00000044365) #19	DOCK7 (ENSDARG00000078675) #20	atg4c (ENSDARG00000044373) #21	foxd3 (ENSDARG00000021032) #22	alg6 (ENSDARG00000017617) #23	itgb3bp (ENSDARG00000097493)	efcab7 (ENSDARG00000020279) #26	pgm1 (ENSDARG00000013561) ##27	ENSDARG00000095914	ROR1 (ENSDARG00000015176) #28	CACHD1 (ENSDARG00000061590) #30	RAVER2 (ENSDARG00000075034) #31	jak1 (ENSDARG00000020625) #32	ak4 (ENSDARG00000006546) #37	DNAJC6 (ENSDARG00000079891)	lepr (ENSDARG00000070961)	PDE4B (ENSDARG00000032868)	SGIP1 (ENSDARG00000097897)	insl5a (ENSDARG00000070966)
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00390000015318.b	ENSGT00420000029753.b	ENSGT00940000167241	ENSGT00390000016650.c.a	ENSGT00940000156539	ENSGT00940000157362.d	ENSGT00940000166873	ENSGT00940000164912	ENSGT00940000161068	ENSGT00940000162747	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00800000125311	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Channel catfish	MODERN SPECIES	2	tmem69 (ENSIPUG00000006174)	gpbp1l1 (ENSIPUG00000006195)	ccdc17 (ENSIPUG00000006249)	nasp (ENSIPUG00000006291)	akr1a1b (ENSIPUG00000006321)	ADCYAP1R1 (ENSIPUG00000006369)	ENSIPUG00000006385	ENSIPUG00000006402	zc3h3 (ENSIPUG00000006438)	mafaa (ENSIPUG00000006453)	KANK4 (ENSIPUG00000006465) #17	usp1 (ENSIPUG00000006489) #18	DOCK7 (ENSIPUG00000006515) #20	angptl3 (ENSIPUG00000006614) #19	ATG4C (ENSIPUG00000006632) #21	foxd3 (ENSIPUG00000006701) #22	alg6 (ENSIPUG00000006720) #23	itgb3bp (ENSIPUG00000006746)	PGM1 (ENSIPUG00000006772) ##27	ROR1 (ENSIPUG00000006822) #28	CACHD1 (ENSIPUG00000006905) #30	raver2 (ENSIPUG00000007082) #31	jak1 (ENSIPUG00000007138) #32	AK4 (ENSIPUG00000007289) #37	dnajc6 (ENSIPUG00000007320)	lepr (ENSIPUG00000007420)	pde4b (ENSIPUG00000007480)	SGIP1 (ENSIPUG00000007747)	ENSIPUG00000007788	Rln3 (ENSIPUG00000007802)	wdr78 (ENSIPUG00000007816)
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00390000015318.b	ENSGT00420000029753.b	ENSGT00940000167241	ENSGT00390000016650.c.a	ENSGT00940000156539	ENSGT00940000157362.d	ENSGT00940000166873	ENSGT00940000164912	ENSGT00940000161068	ENSGT00940000162747	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00800000125311	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Characoidei	ANCESTRAL SPECIES		ENSGT00390000015318.b	ENSGT00420000029753.b	ENSGT00940000167241	ENSGT00390000016650.c.a	ENSGT00940000156539	ENSGT00940000157362.d	ENSGT00940000166873	ENSGT00940000164912	ENSGT00940000161068	ENSGT00940000162747	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00800000125311	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Red-bellied piranha	MODERN SPECIES	9	GPBP1L1 (ENSPNAG00000010086)	ENSPNAG00000010038	nasp (ENSPNAG00000010000)	akr1a1b (ENSPNAG00000009969)	ADCYAP1R1 (ENSPNAG00000009951)	ENSPNAG00000009929	ENSPNAG00000005129	ENSPNAG00000009850	ENSPNAG00000009824	mafaa (ENSPNAG00000009815)	KANK4 (ENSPNAG00000009805) #17	usp1 (ENSPNAG00000009770) #18	DOCK7 (ENSPNAG00000009719) #20	angptl3 (ENSPNAG00000001321) #19	atg4c (ENSPNAG00000009554) #21	foxd3 (ENSPNAG00000009528) #22	alg6 (ENSPNAG00000009518) #23	itgb3bp (ENSPNAG00000009499)	pgm1 (ENSPNAG00000009475) ##27	ROR1 (ENSPNAG00000009439) #28	CACHD1 (ENSPNAG00000009369) #30
Mexicana tetra	MODERN SPECIES	1371																foxd3 (ENSAMXG00000024940) #22	alg6 (ENSAMXG00000010552) #23	pgm1 (ENSAMXG00000010553) ##27
Electric eel	MODERN SPECIES	832																foxd3 (ENSEEEG00000018803) #22	alg6 (ENSEEEG00000018763) #23	pgm1 (ENSEEEG00000018706) ##27	ENSEEEG00000018698 #28
Euteleosteomorpha	ANCESTRAL SPECIES	70	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00940000175705	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000154396.b.b.a
Protacanthopterygii	ANCESTRAL SPECIES	30	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00620000088018.v	ENSGT00940000175705	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243.r.b #18	ENSGT00910000144243.r.a #18	ENSGT00940000156746.a #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00390000018600	ENSGT01060000248530.C.d	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	36	ENSGT00940000166530.d	ENSGT00940000157693.p	ENSGT00940000173535	ENSGT00940000166725.j	ENSGT00390000003015.c.c	ENSGT00620000088018.v.b	ENSGT00940000175705	ENSGT00390000014984.r	ENSGT00390000006224.k	ENSGT00940000156282.a.b.b	ENSGT00940000158468.a.b.d.a.b #17	ENSGT00910000144243.r.a #18	ENSGT00940000155661.ab #20	ENSGT00940000156746.a.d #19	ENSGT00530000063000.a.a.a.c #21	ENSGT00940000161645.b.g #22	ENSGT00940000153733.B.i #23	ENSGT00390000015466 #26	ENSGT00940000155542.a.d ##27	ENSGT00940000153947.B.i.b #28	ENSGT00940000157568.g.a #30	ENSGT00940000158648.h #31
Huchen	MODERN SPECIES	2175															ENSHHUG00000017139	foxd3 (ENSHHUG00000017136) #22	alg6 (ENSHHUG00000017105) #23	efcab7 (ENSHHUG00000017023) #26	pgm1 (ENSHHUG00000016853) ##27
Salmoninae_a	ANCESTRAL SPECIES	46	ENSGT00530000063498.B	ENSGT00940000166530.d	ENSGT00940000157693.p	ENSGT00940000173535	ENSGT00940000166725.j	ENSGT00390000003015.c.c	ENSGT00620000088018.v.b	ENSGT00390000014984.r	ENSGT00390000006224.k	ENSGT00940000156282.a.b.b	ENSGT00940000158468.a.b.d.a.b #17	ENSGT00910000144243.r.a #18	ENSGT00940000156746.a.d #19	ENSGT00940000155661.ab #20	ENSGT00530000063000.a.a.a.c #21	ENSGT00940000161645.b.g #22	ENSGT00940000153733.B.i #23	ENSGT00390000015466 #26	ENSGT00940000155542.a.d ##27	ENSGT00940000153947.B.i.b #28	ENSGT00940000157568.g.a #30	ENSGT00940000158648.h #31	ENSGT00940000157092.v.a.b #32	ENSGT00940000154568.ib #37	ENSGT00940000158755.j	ENSGT00730000111209.r	ENSGT00940000155190.bb.a.h	ENSGT00940000156301.a.a.c.a	ENSGT00940000156209	ENSGT00390000010922	ENSGT00510000049371.m
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000157693.p	ENSGT00940000173535	ENSGT00940000166725.j	ENSGT00390000003015.c.c	ENSGT00620000088018.v.b	ENSGT00390000014984.r	ENSGT00390000006224.k	ENSGT00940000156282.a.b.b	ENSGT00940000154819.a.a.a.g.b	ENSGT00940000158468.a.b.d.b #17	ENSGT00940000158468.a.b.d.a.a.a #17	ENSGT00910000144243.r.a #18	ENSGT00940000156746.a.d #19	ENSGT00940000155661.ab #20	ENSGT00530000063000.a.a.a.c #21	ENSGT00940000161645.b.g #22	ENSGT00940000153733.B.i #23	ENSGT00390000015466 #26	ENSGT00940000153947.B.i.b #28	ENSGT00940000157568.g.a #30	ENSGT00940000158648.h #31	ENSGT00940000157092.v.a.b #32	ENSGT00940000154568.ib #37	ENSGT00940000158755.j	ENSGT00730000111209.r	ENSGT00940000155190.bb.a.h	ENSGT00940000156301.a.a.c.a	ENSGT00940000156209	ENSGT00390000010922.i	ENSGT00510000049371.n	ENSGT00390000007658
Oncorhynchus_a	ANCESTRAL SPECIES	14											ENSGT00940000158468.a.b.d.a.a.a #17	ENSGT00910000144243.r.a #18	ENSGT00940000156746.a.d #19	ENSGT00940000155661.ab #20	ENSGT00530000063000.a.a.a.c #21	ENSGT00940000161645.b.g #22	ENSGT00940000153733.B.i.a #23	ENSGT00390000015466 #26	ENSGT00940000153947.B.i.b #28	ENSGT00940000157568.g.a #30	ENSGT00940000158648.h #31	ENSGT00940000157092.v.a.b.a #32	ENSGT00940000154568.ib #37	ENSGT00940000158755.j	ENSGT00730000111209.r	ENSGT00940000155190.bb.a.h	ENSGT00940000156301.a.a.c.a	ENSGT00940000156209	ENSGT00510000049371.n	ENSGT00390000007658	ENSGT00530000063790.a.a.d
Coho salmon	MODERN SPECIES	4	CFAP57 (ENSOKIG00005044864)	EBNA1BP2 (ENSOKIG00005044875)	EBNA1BP2 (ENSOKIG00005044886)	cfap144 (ENSOKIG00005044899)	ENSOKIG00005044925	ENSOKIG00005044933	lrp8 (ENSOKIG00005044941)	ENSOKIG00005045022	ENSOKIG00005045037 #17	ENSOKIG00005045052	ENSOKIG00005045058 #17	usp1 (ENSOKIG00005045064) #18	DOCK7 (ENSOKIG00005045135) #20	angptl3 (ENSOKIG00005045742) #19	atg4c (ENSOKIG00005045753) #21	foxd3 (ENSOKIG00005045770) #22	alg6 (ENSOKIG00005045787) #23	alg6 (ENSOKIG00005045825) #23	efcab7 (ENSOKIG00005045884) #26	ROR1 (ENSOKIG00005046005) #28	CACHD1 (ENSOKIG00005046102) #30	RAVER2 (ENSOKIG00005046253) #31	JAK1 (ENSOKIG00005046327) #32	ENSOKIG00005047094	ENSOKIG00005013418 #32	ak4 (ENSOKIG00005013429) #37	DNAJC6 (ENSOKIG00005013448)	lepr (ENSOKIG00005013530)	PDE4B (ENSOKIG00005013669)	ENSOKIG00005014046	SGIP1 (ENSOKIG00005014061)
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005025496	ENSOTSG00005025495	ENSOTSG00005023224	si:ch73-185c24.2 (ENSOTSG00005025494)	TMEM125 (ENSOTSG00005023213)	cfap144 (ENSOTSG00005024993)	ebna1bp2 (ENSOTSG00005024992)	ENSOTSG00005024990	dmrt2b (ENSOTSG00005024989)	ENSOTSG00005024986	ENSOTSG00005023264	usp1 (ENSOTSG00005023261) #18	angptl3 (ENSOTSG00005023260) #19	DOCK7 (ENSOTSG00005022038) #20	atg4c (ENSOTSG00005022034) #21	foxd3 (ENSOTSG00005022031) #22	alg6 (ENSOTSG00005022030) #23	efcab7 (ENSOTSG00005021460) #26	ENSOTSG00005021444 #28	CACHD1 (ENSOTSG00005021441) #30	ENSOTSG00005021437 #31	fam102bb (ENSOTSG00005021432)	slc25a24 (ENSOTSG00005021360)	tmem69 (ENSOTSG00005021357)	GPBP1L1 (ENSOTSG00005021356)	nasp (ENSOTSG00005021351)	akr1a1b (ENSOTSG00005021154)	aldh9a1a.1 (ENSOTSG00005019433)	tmco1 (ENSOTSG00005019431)	uck2a (ENSOTSG00005019430)	magoh (ENSOTSG00005019429)
Rainbow trout	MODERN SPECIES	26	TMEM125 (ENSOMYG00000029337)	CFAP57 (ENSOMYG00000067259)	EBNA1BP2 (ENSOMYG00000029324)	cfap144 (ENSOMYG00000029283)	ENSOMYG00000029272	ENSOMYG00000059982	lrp8 (ENSOMYG00000057806)	ENSOMYG00000029257 #17	ENSOMYG00000029246 #17	usp1 (ENSOMYG00000007613) #18	angptl3 (ENSOMYG00000029090) #19	DOCK7 (ENSOMYG00000012090) #20	atg4c (ENSOMYG00000011095) #21	ENSOMYG00000072829	ENSOMYG00000057919	foxd3 (ENSOMYG00000011083) #22	alg6 (ENSOMYG00000074480) #23	efcab7 (ENSOMYG00000010513) #26	ROR1 (ENSOMYG00000010213) #28	ENSOMYG00000067461	ENSOMYG00000056770	CACHD1 (ENSOMYG00000009801) #30	ENSOMYG00000069500	RAVER2 (ENSOMYG00000009510) #31	ENSOMYG00000057732	jak1 (ENSOMYG00000008777) #32	ak4 (ENSOMYG00000008053) #37	DNAJC6 (ENSOMYG00000007981)	ENSOMYG00000060927	lepr (ENSOMYG00000007753)	ENSOMYG00000048257
Salmo	ANCESTRAL SPECIES	20	ENSGT00530000063498.B	ENSGT00940000166530.d	ENSGT00940000157693.p	ENSGT00940000173535	ENSGT00940000166725.j	ENSGT00390000003015.c.c	ENSGT00620000088018.v.b	ENSGT00390000014984.r	ENSGT00390000006224.k	ENSGT00940000156282.a.b.b	ENSGT00940000158468.a.b.d.a.b #17	ENSGT00910000144243.r.a #18	ENSGT00940000156746.a.d #19	ENSGT00940000155661.ab #20	ENSGT00530000063000.a.a.a.c #21	ENSGT00940000161645.b.g #22	ENSGT00940000153733.B.i #23	ENSGT00390000015466 #26	ENSGT00940000155542.a.d ##27	ENSGT00940000153947.B.i.b #28	ENSGT00940000157568.g.a #30	ENSGT00940000158648.h #31	ENSGT00940000157092.v.a.b #32	ENSGT00940000154568.ib #37	ENSGT00940000158755.j	ENSGT00730000111209.r	ENSGT00940000155190.bb.a.h	ENSGT00940000156301.a.a.c.a	ENSGT00940000156209	ENSGT00390000010922	ENSGT00510000049371.m
Atlantic salmon	MODERN SPECIES	1	EBNA1BP2 (ENSSSAG00000045121)	cfap144 (ENSSSAG00000045116)	dmrt2b (ENSSSAG00000045103)	ENSSSAG00000098394	ENSSSAG00000105317	ENSSSAG00000115021	ENSSSAG00000109913	lrp8 (ENSSSAG00000044960)	ENSSSAG00000093136	ENSSSAG00000044917 #17	usp1 (ENSSSAG00000044868) #18	ENSSSAG00000111599 #17	angptl3 (ENSSSAG00000096068) #19	DOCK7 (ENSSSAG00000041817) #20	atg4c (ENSSSAG00000041647) #21	foxd3 (ENSSSAG00000041639) #22	alg6 (ENSSSAG00000041539) #23	efcab7 (ENSSSAG00000041218) #26	pgm1 (ENSSSAG00000085324) ##27	ROR1 (ENSSSAG00000054654) #28	cachd1 (ENSSSAG00000040599) #30	ENSSSAG00000083593	RAVER2 (ENSSSAG00000103493) #31	jak1 (ENSSSAG00000038503) #32	ak4 (ENSSSAG00000081116) #37	DNAJC6 (ENSSSAG00000063080)	lepr (ENSSSAG00000062407)	PDE4B (ENSSSAG00000081191)	dnai4 (ENSSSAG00000054811)	SGIP1 (ENSSSAG00000054865)	ttc4 (ENSSSAG00000087168)
River trout	MODERN SPECIES	14	tie1 (ENSSTUG00000045449)	si:ch73-185c24.2 (ENSSTUG00000045407)	ap1m3 (ENSSTUG00000044934)	TMEM125 (ENSSTUG00000044909)	ENSSTUG00000044901	ebna1bp2 (ENSSTUG00000044871)	cfap144 (ENSSTUG00000044860)	dmrt2b (ENSSTUG00000044852)	ENSSTUG00000044845	ENSSTUG00000044840 #17	ENSSTUG00000044837 #17	usp1 (ENSSTUG00000044821) #18	angptl3 (ENSSTUG00000044806) #19	DOCK7 (ENSSTUG00000042219) #20	atg4c (ENSSTUG00000041921) #21	foxd3 (ENSSTUG00000041894) #22	alg6 (ENSSTUG00000041702) #23	pgm1 (ENSSTUG00000041167) ##27	ROR1 (ENSSTUG00000041091) #28	CACHD1 (ENSSTUG00000040572) #30	RAVER2 (ENSSTUG00000040497) #31	jak1 (ENSSTUG00000040336) #32	ak4 (ENSSTUG00000040296) #37	DNAJC6 (ENSSTUG00000040128)	ENSSTUG00000040120	lepr (ENSSTUG00000039549)	PDE4B (ENSSTUG00000037779)	SGIP1 (ENSSTUG00000037517)	dnai4 (ENSSTUG00000037444)	pars2 (ENSSTUG00000037429)	ttc4 (ENSSTUG00000037232)
Salmoninae	ANCESTRAL SPECIES	934												ENSGT00910000144243.q #18	ENSGT00940000155661.`b #20	ENSGT00940000156746.a.c #19	ENSGT00530000063000.a.a.a.d #21	ENSGT00940000161645.b.h #22	ENSGT00940000153733.B.j #23	ENSGT00940000155542.a.c ##27
Huchen	MODERN SPECIES	494													angptl3 (ENSHHUG00000052529) #19	DOCK7 (ENSHHUG00000052432) #20	atg4c (ENSHHUG00000052426) #21	foxd3 (ENSHHUG00000052425) #22	alg6 (ENSHHUG00000052422) #23	ENSHHUG00000052418	pgm1 (ENSHHUG00000052412) ##27
Salmoninae_a	ANCESTRAL SPECIES	103	ENSGT01030000234931	ENSGT00940000166725.i	ENSGT00390000003015.c.d	ENSGT01030000235036	ENSGT00620000088018.v.a	ENSGT00390000014984.q	ENSGT00390000006224.l	ENSGT00940000156282.a.b.a	ENSGT00940000154819.a.a.a.g.a	ENSGT00940000158468.a.b.c #17	ENSGT00910000144243.r.b #18	ENSGT00910000144243.q #18	ENSGT00940000155661.`b #20	ENSGT00940000156746.a.c #19	ENSGT00530000063000.a.a.a.d #21	ENSGT00940000161645.b.h #22	ENSGT00940000153733.B.j #23	ENSGT00940000155542.a.c ##27	ENSGT00940000153947.B.i.a #28	ENSGT00940000157568.g.b #30	ENSGT00940000158648.g #31	ENSGT00940000157092.v.a.a #32	ENSGT00940000154568.hb #37	ENSGT00940000158755.i	ENSGT00730000111209.q	ENSGT00940000155190.bb.a.g	ENSGT00940000156301.a.a.c.b	ENSGT00940000174981
Salmo	ANCESTRAL SPECIES	64	ENSGT00940000157693.o	ENSGT00510000048988	ENSGT00940000166725.i	ENSGT00390000003015.c.d	ENSGT00620000088018.v.a	ENSGT00390000014984.q	ENSGT00390000006224.l	ENSGT00940000156282.a.b.a	ENSGT00940000154819.a.a.a.g.a	ENSGT00940000158468.a.b.c #17	ENSGT00910000144243.q #18	ENSGT00910000144243.r.b #18	ENSGT00940000155661.`b #20	ENSGT00940000156746.a.c #19	ENSGT00530000063000.a.a.a.d #21	ENSGT00940000161645.b.h #22	ENSGT00940000153733.B.j #23	ENSGT00940000155542.a.c ##27	ENSGT00940000153947.B.i.a #28	ENSGT00940000157568.g.b #30	ENSGT00940000158648.g #31	ENSGT00940000157092.v.a.a #32	ENSGT00940000154568.hb #37	ENSGT00940000158755.i	ENSGT00730000111209.q	ENSGT00940000155190.bb.a.g	ENSGT00940000156301.a.a.c.b	ENSGT00940000174981
River trout	MODERN SPECIES	33	mpl (ENSSTUG00000005928)	tie1 (ENSSTUG00000005979)	C1orf210 (ENSSTUG00000006574)	ap1m3 (ENSSTUG00000006631)	TMEM125 (ENSSTUG00000008099)	CFAP57 (ENSSTUG00000008107)	ebna1bp2 (ENSSTUG00000008168)	cfap144 (ENSSTUG00000008194)	dmrt2b (ENSSTUG00000008202)	lrp8 (ENSSTUG00000008237)	ENSSTUG00000009808 #17	ENSSTUG00000009830	ENSSTUG00000009836 #18	DOCK7 (ENSSTUG00000009898) #20	angptl3 (ENSSTUG00000013481) #19	foxd3 (ENSSTUG00000013490) #22	alg6 (ENSSTUG00000013500) #23	ENSSTUG00000013545	pgm1 (ENSSTUG00000013568) ##27	ROR1 (ENSSTUG00000013865) #28	CACHD1 (ENSSTUG00000014041) #30	RAVER2 (ENSSTUG00000014126) #31	jak1 (ENSSTUG00000014197) #32	ak4 (ENSSTUG00000014575) #37	DNAJC6 (ENSSTUG00000014598)	lepr (ENSSTUG00000014647)	PDE4B (ENSSTUG00000014883)	SGIP1 (ENSSTUG00000015115)	ENSSTUG00000015164	ENSSTUG00000015172	ttc4 (ENSSTUG00000015182)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000157693.o	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725.i	ENSGT00390000003015.c.d	ENSGT01030000235036	ENSGT00620000088018.v.a	ENSGT00390000014984.q	ENSGT00390000006224.l	ENSGT00940000156282.a.b.a	ENSGT00940000154819.a.a.a.g.a	ENSGT00940000158468.a.b.c #17	ENSGT00910000144243.r.b #18	ENSGT00940000156746.a.c #19	ENSGT00940000155661.`b #20	ENSGT00940000161645.b.h #22	ENSGT00940000153733.B.j #23	ENSGT00940000155542.a.c ##27	ENSGT00940000153947.B.i.a #28	ENSGT00940000157568.g.b #30	ENSGT00940000155715.nb.a	ENSGT00940000158648.g #31	ENSGT00940000157092.v.a.a #32	ENSGT00940000154568.hb #37	ENSGT00940000158755.i	ENSGT00730000111209.q	ENSGT00940000155190.bb.a.g	ENSGT00940000156301.a.a.c.b	ENSGT00940000174981	ENSGT00390000010922.j	ENSGT00510000049371.m
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000166530.c	ENSGT00940000157693.o	ENSGT01030000234931	ENSGT00940000166725.i	ENSGT00390000003015.c.d	ENSGT01030000235036	ENSGT00620000088018.v.a	ENSGT00390000014984.q	ENSGT00390000006224.l	ENSGT00940000156282.a.b.a	ENSGT00940000154819.a.a.a.g.a	ENSGT00940000158468.a.b.c #17	ENSGT00910000144243.r.b #18	ENSGT00940000156746.a.c #19	ENSGT00940000155661.`b #20	ENSGT00940000161645.b.h #22	ENSGT00940000155542.a.c ##27	ENSGT00940000153947.B.i.a #28	ENSGT00940000157568.g.b #30	ENSGT00940000155715.nb.a	ENSGT00940000158648.g #31	ENSGT00940000157092.v.a.a #32	ENSGT00940000154568.hb #37	ENSGT00940000158755.i	ENSGT00730000111209.q	ENSGT00940000155190.bb.a.g	ENSGT00940000156301.a.a.c.b	ENSGT00940000174981	ENSGT00390000010922.j	ENSGT00510000049371.m	ENSGT00530000063790.a.a.c
Chinook salmon	MODERN SPECIES		mpl (ENSOTSG00005014182)	tie1 (ENSOTSG00005014172)	ENSOTSG00005014171	ap1m3 (ENSOTSG00005013055)	TMEM125 (ENSOTSG00005013048)	ENSOTSG00005013047	CFAP57 (ENSOTSG00005013041)	ebna1bp2 (ENSOTSG00005013039)	cfap144 (ENSOTSG00005013038)	dmrt2b (ENSOTSG00005013037)	lrp8 (ENSOTSG00005013035)	ENSOTSG00005013032 #17	ENSOTSG00005013030 #18	angptl3 (ENSOTSG00005013029) #19	DOCK7 (ENSOTSG00005011527) #20	foxd3 (ENSOTSG00005011503) #22	ENSOTSG00005011498	pgm1 (ENSOTSG00005011497) ##27	ROR1 (ENSOTSG00005011261) #28	ENSOTSG00005011256	RAVER2 (ENSOTSG00005011249) #31	jak1 (ENSOTSG00005008868) #32	ak4 (ENSOTSG00005008845) #37	ENSOTSG00005008844	DNAJC6 (ENSOTSG00005008843)	lepr (ENSOTSG00005008832)	PDE4B (ENSOTSG00005008821)	SGIP1 (ENSOTSG00005008819)	ENSOTSG00005008818	pars2 (ENSOTSG00005008817)	ttc4 (ENSOTSG00005008816)
Coho salmon	MODERN SPECIES	1	tie1 (ENSOKIG00005004729)	ENSOKIG00005004696	ap1m3 (ENSOKIG00005004338)	TMEM125 (ENSOKIG00005004199)	ENSOKIG00005004187	CFAP57 (ENSOKIG00005004165)	ebna1bp2 (ENSOKIG00005004146)	cfap144 (ENSOKIG00005004135)	ENSOKIG00005004130	lrp8 (ENSOKIG00005003625)	ENSOKIG00005003531 #17	ENSOKIG00005003527 #18	ENSOKIG00005003523	angptl3 (ENSOKIG00005003517) #19	DOCK7 (ENSOKIG00005002810) #20	foxd3 (ENSOKIG00005002655) #22	ENSOKIG00005002647	pgm1 (ENSOKIG00005002591) ##27	ROR1 (ENSOKIG00005002451) #28	CACHD1 (ENSOKIG00005002042) #30	ENSOKIG00005001933	RAVER2 (ENSOKIG00005001907) #31	ENSOKIG00005001893	jak1 (ENSOKIG00005030483) #32	ak4 (ENSOKIG00005030393) #37	ENSOKIG00005030383	DNAJC6 (ENSOKIG00005030365)	ENSOKIG00005030352	lepr (ENSOKIG00005029873)	PDE4B (ENSOKIG00005029281)	SGIP1 (ENSOKIG00005029132)
Rainbow trout	MODERN SPECIES	22	prpf38a (ENSOMYG00000005627)	mpl (ENSOMYG00000005603)	tie1 (ENSOMYG00000005480)	C1orf210 (ENSOMYG00000005222)	ap1m3 (ENSOMYG00000004877)	TMEM125 (ENSOMYG00000052670)	CFAP57 (ENSOMYG00000004476)	EBNA1BP2 (ENSOMYG00000004302)	cfap144 (ENSOMYG00000004248)	ENSOMYG00000004227	lrp8 (ENSOMYG00000004123)	ENSOMYG00000003806 #17	angptl3 (ENSOMYG00000003764) #19	ENSOMYG00000002675 #20	ENSOMYG00000053533	foxd3 (ENSOMYG00000001127) #22	ENSOMYG00000001112 #23	ENSOMYG00000058134	pgm1 (ENSOMYG00000000997) ##27	ROR1 (ENSOMYG00000000888) #28	CACHD1 (ENSOMYG00000000850) #30	ENSOMYG00000000816	RAVER2 (ENSOMYG00000053323) #31	jak1 (ENSOMYG00000000773) #32	ak4 (ENSOMYG00000000648) #37	DNAJC6 (ENSOMYG00000000633)	ENSOMYG00000076689	lepr (ENSOMYG00000000549)	PDE4B (ENSOMYG00000000343)	ENSOMYG00000050390	SGIP1 (ENSOMYG00000074909)
Northern pike	MODERN SPECIES	7	ENSELUG00000033065	ap1m3 (ENSELUG00000021498)	TMEM125 (ENSELUG00000021518)	ENSELUG00000032419	ebna1bp2 (ENSELUG00000021634)	cfap144 (ENSELUG00000021528)	dmrt2b (ENSELUG00000000944)	ENSELUG00000021660	lrp8 (ENSELUG00000021873)	ENSELUG00000021944 #17	usp1 (ENSELUG00000021969) #18	angptl3 (ENSELUG00000021995) #19	DOCK7 (ENSELUG00000022074) #20	atg4c (ENSELUG00000022092) #21	ENSELUG00000022104	foxd3 (ENSELUG00000022126) #22	alg6 (ENSELUG00000022163) #23	efcab7 (ENSELUG00000001058) #26	ROR1 (ENSELUG00000022236) #28	CACHD1 (ENSELUG00000022312) #30	RAVER2 (ENSELUG00000022384) #31	jak1 (ENSELUG00000022457) #32	ak4 (ENSELUG00000022480) #37	DNAJC6 (ENSELUG00000022502)	lepr (ENSELUG00000022567)	ENSELUG00000025775	PDE4B (ENSELUG00000022680)	SGIP1 (ENSELUG00000022736)	insl5a (ENSELUG00000022758)	dnai4 (ENSELUG00000022844)	ttc4 (ENSELUG00000022921)
Acanthomorphata	ANCESTRAL SPECIES	164	ENSGT00940000157693	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00940000157693	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b	ENSGT00510000049371	ENSGT00390000010922
Percomorphaceae	ANCESTRAL SPECIES	32	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000178094
Tiger tail seahorse	MODERN SPECIES	439	ENSHCOG00000004962	zgc:65873 (ENSHCOG00000004950)	SYDE2 (ENSHCOG00000004933)	ENSHCOG00000004924	MCOLN3 (ENSHCOG00000004907)	ENSHCOG00000004880	ebna1bp2 (ENSHCOG00000004832)	cfap144 (ENSHCOG00000004803)	ENSHCOG00000004782	lrp8 (ENSHCOG00000004760)	ENSHCOG00000004649 #17	usp1 (ENSHCOG00000004640) #18	DOCK7 (ENSHCOG00000004631) #20	angptl3 (ENSHCOG00000004552) #19	atg4c (ENSHCOG00000000125) #21	foxd3 (ENSHCOG00000004520) #22	alg6 (ENSHCOG00000004514) #23
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000178094
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.r
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.r
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000178094
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000178094
Mangrove rivulus	MODERN SPECIES	53	ccn1 (ENSKMAG00000010746)	DDAH1 (ENSKMAG00000010777)	mpl (ENSKMAG00000010809)	tie1 (ENSKMAG00000010849)	ap1m3 (ENSKMAG00000010897)	TMEM125 (ENSKMAG00000010948)	ebna1bp2 (ENSKMAG00000010961)	ENSKMAG00000010983	dmrt2b (ENSKMAG00000010995)	lrp8 (ENSKMAG00000011018)	ENSKMAG00000011044 #17	usp1 (ENSKMAG00000011067) #18	DOCK7 (ENSKMAG00000011135) #20	angptl3 (ENSKMAG00000011249) #19	atg4c (ENSKMAG00000011290) #21	foxd3 (ENSKMAG00000011317) #22	alg6 (ENSKMAG00000011332) #23	efcab7 (ENSKMAG00000011356) #26	pgm1 (ENSKMAG00000011390) ##27	ROR1 (ENSKMAG00000011440) #28	CACHD1 (ENSKMAG00000011523) #30	RAVER2 (ENSKMAG00000011656) #31	jak1 (ENSKMAG00000011718) #32	ak4 (ENSKMAG00000011826) #37	DNAJC6 (ENSKMAG00000011882)	ENSKMAG00000011950	lepr (ENSKMAG00000011984)	lurap1 (ENSKMAG00000012079)	TTC22 (ENSKMAG00000012093)	ENSKMAG00000012104	ENSKMAG00000012121
Turquoise killifish	MODERN SPECIES	1626	DDAH1 (ENSNFUG00015025287)	mpl (ENSNFUG00015025288)	TIE1 (ENSNFUG00015025290)	ENSNFUG00015025297	AP1M3 (ENSNFUG00015025305)	TMEM125 (ENSNFUG00015025311)	ebna1bp2 (ENSNFUG00015025312)	dmrt2b (ENSNFUG00015025316)	ENSNFUG00015025317	lrp8 (ENSNFUG00015025324)	CU570976.1 (ENSNFUG00015025343) #17	USP1 (ENSNFUG00015025344) #18	DOCK7 (ENSNFUG00015025358) #20	ANGPTL3 (ENSNFUG00015025385) #19	ATG4C (ENSNFUG00015025388) #21	FOXD3 (ENSNFUG00015025389) #22	alg6 (ENSNFUG00015025390) #23	ENSNFUG00015025391	pgm1 (ENSNFUG00015025392) ##27	ROR1 (ENSNFUG00015025393) #28	CACHD1 (ENSNFUG00015025394) #30	ENSNFUG00015025395	ENSNFUG00015025396	RAVER2 (ENSNFUG00015025397) #31	JAK1 (ENSNFUG00015025398) #32	AK4 (ENSNFUG00015025400) #37	DNAJC6 (ENSNFUG00015005190)	ENSNFUG00015005240	lepr (ENSNFUG00015005454)	LURAP1 (ENSNFUG00015006920)	TTC22 (ENSNFUG00015006925)
Cyprinodontoidei	ANCESTRAL SPECIES	29	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661.ib #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661.ib #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b
NAME_6	ANCESTRAL SPECIES	59	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661.ib #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b.i
Amazon molly	MODERN SPECIES	290	DDAH1 (ENSPFOG00000005672)	tie1 (ENSPFOG00000005742)	ENSPFOG00000006205	ap1m3 (ENSPFOG00000006216)	TMEM125 (ENSPFOG00000020299)	ebna1bp2 (ENSPFOG00000006385)	cfap144 (ENSPFOG00000023029)	dmrt2b (ENSPFOG00000006515)	lrp8 (ENSPFOG00000006614)	ENSPFOG00000007009 #17	usp1 (ENSPFOG00000007080) #18	ENSPFOG00000022542	DOCK7 (ENSPFOG00000007254) #20	angptl3 (ENSPFOG00000008280) #19	atg4c (ENSPFOG00000008338) #21	foxd3 (ENSPFOG00000020300) #22	alg6 (ENSPFOG00000008416) #23	efcab7 (ENSPFOG00000008536) #26	ROR1 (ENSPFOG00000008799) #28	CACHD1 (ENSPFOG00000008959) #30	RAVER2 (ENSPFOG00000009386) #31	jak1 (ENSPFOG00000009493) #32	ak4 (ENSPFOG00000009906) #37	DNAJC6 (ENSPFOG00000009899)	DNAJC6 (ENSPFOG00000009918)	ENSPFOG00000022274	lepr (ENSPFOG00000010242)	lurap1 (ENSPFOG00000010426)	TTC22 (ENSPFOG00000010435)	ENSPFOG00000010499	ENSPFOG00000010506
Sailfin molly	MODERN SPECIES	358												usp1 (ENSPLAG00000011589) #18	DOCK7 (ENSPLAG00000011577) #20	angptl3 (ENSPLAG00000011467) #19	atg4c (ENSPLAG00000011403) #21	foxd3 (ENSPLAG00000011392) #22	alg6 (ENSPLAG00000011372) #23	efcab7 (ENSPLAG00000011367) #26	pgm1 (ENSPLAG00000011357) ##27
Guppy	MODERN SPECIES	456	mpl (ENSPREG00000021163)	tie1 (ENSPREG00000021138)	ENSPREG00000021128	ap1m3 (ENSPREG00000021115)	TMEM125 (ENSPREG00000021107)	ENSPREG00000021099	ebna1bp2 (ENSPREG00000021076)	ENSPREG00000021064	dmrt2b (ENSPREG00000021054)	lrp8 (ENSPREG00000021033)	ENSPREG00000021013 #17	usp1 (ENSPREG00000020986) #18	angptl3 (ENSPREG00000020956) #19	DOCK7 (ENSPREG00000020758) #20	atg4c (ENSPREG00000020694) #21	foxd3 (ENSPREG00000020683) #22	alg6 (ENSPREG00000020671) #23	efcab7 (ENSPREG00000020648) #26	pgm1 (ENSPREG00000020635) ##27	ROR1 (ENSPREG00000020617) #28	CACHD1 (ENSPREG00000020549) #30	RAVER2 (ENSPREG00000020514) #31	jak1 (ENSPREG00000020413) #32	ak4 (ENSPREG00000020366) #37
Platyfish	MODERN SPECIES	23	mpl (ENSXMAG00000011264)	tie1 (ENSXMAG00000011265)	ENSXMAG00000024456	ap1m3 (ENSXMAG00000011310)	TMEM125 (ENSXMAG00000011339)	cfap144 (ENSXMAG00000024667)	ebna1bp2 (ENSXMAG00000011341)	dmrt2b (ENSXMAG00000022040)	lrp8 (ENSXMAG00000011361)	ENSXMAG00000011384 #17	usp1 (ENSXMAG00000022505) #18	DOCK7 (ENSXMAG00000009960) #20	ENSXMAG00000026418 #20	angptl3 (ENSXMAG00000010042) #19	atg4c (ENSXMAG00000011389) #21	foxd3 (ENSXMAG00000029818) #22	alg6 (ENSXMAG00000002171) #23	efcab7 (ENSXMAG00000002173) #26	pgm1 (ENSXMAG00000002175) ##27	ROR1 (ENSXMAG00000002185) #28	CACHD1 (ENSXMAG00000002196) #30	RAVER2 (ENSXMAG00000002206) #31	jak1 (ENSXMAG00000002212) #32	ak4 (ENSXMAG00000002237) #37	DNAJC6 (ENSXMAG00000002240)	ENSXMAG00000020073	lepr (ENSXMAG00000002246)	lurap1 (ENSXMAG00000027810)	TTC22 (ENSXMAG00000002256)	ENSXMAG00000002258	ENSXMAG00000002260
NAME_4	ANCESTRAL SPECIES	62	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b
Mummichog	MODERN SPECIES	2395	DDAH1 (ENSFHEG00000001556)	mpl (ENSFHEG00000001540)	tie1 (ENSFHEG00000001516)	ENSFHEG00000001507	ap1m3 (ENSFHEG00000001500)	TMEM125 (ENSFHEG00000001476)	ebna1bp2 (ENSFHEG00000001475)	cfap144 (ENSFHEG00000001471)	dmrt2b (ENSFHEG00000001465)	lrp8 (ENSFHEG00000001460)	ENSFHEG00000001454 #17	usp1 (ENSFHEG00000001450) #18	DOCK7 (ENSFHEG00000001444) #20	angptl3 (ENSFHEG00000001417) #19	atg4c (ENSFHEG00000001413) #21	foxd3 (ENSFHEG00000001408) #22	alg6 (ENSFHEG00000001403) #23	efcab7 (ENSFHEG00000001397) #26	pgm1 (ENSFHEG00000001381) ##27	ROR1 (ENSFHEG00000001360) #28	CACHD1 (ENSFHEG00000001343) #30	RAVER2 (ENSFHEG00000001322) #31	jak1 (ENSFHEG00000001301) #32	ak4 (ENSFHEG00000001284) #37	DNAJC6 (ENSFHEG00000001278)	ENSFHEG00000001274	lepr (ENSFHEG00000001269)	lurap1 (ENSFHEG00000001264)	TTC22 (ENSFHEG00000001263)	ENSFHEG00000001256	ENSFHEG00000023198
Sheepshead minnow	MODERN SPECIES	288																foxd3 (ENSCVAG00000002594) #22	alg6 (ENSCVAG00000002600) #23	efcab7 (ENSCVAG00000002607) #26	pgm1 (ENSCVAG00000002615) ##27	ROR1 (ENSCVAG00000002621) #28	CACHD1 (ENSCVAG00000002667) #30	RAVER2 (ENSCVAG00000002687) #31	jak1 (ENSCVAG00000002739) #32	ak4 (ENSCVAG00000002745) #37	ENSCVAG00000002748	DNAJC6 (ENSCVAG00000002755)	lepr (ENSCVAG00000002765)	lurap1 (ENSCVAG00000002771)	ENSCVAG00000002776	ENSCVAG00000002780	ttll7 (ENSCVAG00000002801)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000156746.a #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b.m	ENSGT00510000049371
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b.m.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b.m.a
Indian medaka	MODERN SPECIES	13	DDAH1 (ENSOMEG00000008896)	mpl (ENSOMEG00000008842)	tie1 (ENSOMEG00000008768)	ENSOMEG00000008635	ap1m3 (ENSOMEG00000000887)	TMEM125 (ENSOMEG00000000214)	ebna1bp2 (ENSOMEG00000008553)	cfap144 (ENSOMEG00000008517)	dmrt2b (ENSOMEG00000008490)	lrp8 (ENSOMEG00000008457)	ENSOMEG00000008384 #17	usp1 (ENSOMEG00000008356) #18	DOCK7 (ENSOMEG00000008295) #20	angptl3 (ENSOMEG00000008204) #19	atg4c (ENSOMEG00000008186) #21	foxd3 (ENSOMEG00000008152) #22	alg6 (ENSOMEG00000008138) #23	efcab7 (ENSOMEG00000008114) #26	pgm1 (ENSOMEG00000008079) ##27	ROR1 (ENSOMEG00000008043) #28	CACHD1 (ENSOMEG00000007958) #30	RAVER2 (ENSOMEG00000007789) #31	jak1 (ENSOMEG00000007715) #32	ak4 (ENSOMEG00000007620) #37	DNAJC6 (ENSOMEG00000007567)	lepr (ENSOMEG00000007461)	lurap1 (ENSOMEG00000007386)	TTC22 (ENSOMEG00000007377)	ENSOMEG00000007359	ENSOMEG00000007342	ENSOMEG00000007277
Javanese ricefish	MODERN SPECIES	18	ccn1 (ENSOJAG00000014846)	DDAH1 (ENSOJAG00000014840)	mpl (ENSOJAG00000014657)	ENSOJAG00000014622	ap1m3 (ENSOJAG00000014346)	TMEM125 (ENSOJAG00000014323)	ebna1bp2 (ENSOJAG00000014192)	cfap144 (ENSOJAG00000014157)	dmrt2b (ENSOJAG00000014138)	lrp8 (ENSOJAG00000013543)	ENSOJAG00000013489 #17	usp1 (ENSOJAG00000013442) #18	angptl3 (ENSOJAG00000013433) #19	DOCK7 (ENSOJAG00000006559) #20	atg4c (ENSOJAG00000005695) #21	foxd3 (ENSOJAG00000005675) #22	alg6 (ENSOJAG00000005630) #23	efcab7 (ENSOJAG00000005212) #26	ROR1 (ENSOJAG00000005029) #28	CACHD1 (ENSOJAG00000004436) #30	RAVER2 (ENSOJAG00000004352) #31	jak1 (ENSOJAG00000003942) #32	ak4 (ENSOJAG00000003755) #37	DNAJC6 (ENSOJAG00000003457)	lepr (ENSOJAG00000002399)	lurap1 (ENSOJAG00000002112)	ENSOJAG00000002096	ENSOJAG00000002088	ENSOJAG00000002028	ENSOJAG00000001998	ttc4 (ENSOJAG00000001935)
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000156746.a #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b.n	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.b.m.c
Japanese Medaka HdrR	MODERN SPECIES	18	mpl (ENSORLG00000023166)	tie1 (ENSORLG00000010699)	ENSORLG00000030649	ap1m3 (ENSORLG00000010651)	TMEM125 (ENSORLG00000023728)	ENSORLG00000025985	ebna1bp2 (ENSORLG00000010609)	cfap144 (ENSORLG00000026302)	dmrt2b (ENSORLG00000025087)	lrp8 (ENSORLG00000010561)	ENSORLG00000022051 #17	usp1 (ENSORLG00000010503) #18	angptl3 (ENSORLG00000010477) #19	DOCK7 (ENSORLG00000010464) #20	atg4c (ENSORLG00000010404) #21	foxd3 (ENSORLG00000010359) #22	alg6 (ENSORLG00000010347) #23	efcab7 (ENSORLG00000010304) #26	pgm1 (ENSORLG00000010265) ##27	ROR1 (ENSORLG00000010196) #28	CACHD1 (ENSORLG00000010145) #30	RAVER2 (ENSORLG00000010073) #31	jak1 (ENSORLG00000010063) #32	ak4 (ENSORLG00000009987) #37	DNAJC6 (ENSORLG00000009969)	ENSORLG00000022484	lepr (ENSORLG00000009937)	lurap1 (ENSORLG00000009924)	TTC22 (ENSORLG00000009920)	ENSORLG00000023913	ENSORLG00000022609
Chinese medaka	MODERN SPECIES	41	ENSOSIG00000022534	ENSOSIG00000022533	ENSOSIG00000022530	ENSOSIG00000022528	TMEM125 (ENSOSIG00000022527)	ap1m3 (ENSOSIG00000022524)	cfap144 (ENSOSIG00000022521)	ENSOSIG00000022519	ENSOSIG00000022517	lrp8 (ENSOSIG00000022499)	ENSOSIG00000022456 #17	usp1 (ENSOSIG00000022451) #18	angptl3 (ENSOSIG00000022447) #19	DOCK7 (ENSOSIG00000022228) #20	atg4c (ENSOSIG00000021916) #21	foxd3 (ENSOSIG00000021915) #22	alg6 (ENSOSIG00000021905) #23	efcab7 (ENSOSIG00000021878) #26	pgm1 (ENSOSIG00000021670) ##27	ROR1 (ENSOSIG00000021655) #28	CACHD1 (ENSOSIG00000021622) #30	ENSOSIG00000021599 #31	ENSOSIG00000021595 #31	jak1 (ENSOSIG00000019729) #32	ak4 (ENSOSIG00000019604) #37	DNAJC6 (ENSOSIG00000019470)	lurap1 (ENSOSIG00000019440)	TTC22 (ENSOSIG00000019437)	ENSOSIG00000019431	ENSOSIG00000019426	ENSOSIG00000019423
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.a	ENSGT00940000163701.b.a.a.a.b.c.a.r
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725.h	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.r	ENSGT00510000049371
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725.h	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000156746.a #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a.e ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.r	ENSGT00510000049371
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725.h	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a.e ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000155356.d.b.a.a.a.a.a.a.a.b.a.b.a.a	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a.r
Orange clownfish	MODERN SPECIES	11	ccn1 (ENSAPEG00000012042)	DDAH1 (ENSAPEG00000011985)	mpl (ENSAPEG00000011964)	tie1 (ENSAPEG00000011922)	ap1m3 (ENSAPEG00000011876)	TMEM125 (ENSAPEG00000011855)	ebna1bp2 (ENSAPEG00000011835)	cfap144 (ENSAPEG00000011816)	dmrt2b (ENSAPEG00000011794)	lrp8 (ENSAPEG00000011589)	ENSAPEG00000011564 #17	usp1 (ENSAPEG00000011537) #18	angptl3 (ENSAPEG00000011504) #19	DOCK7 (ENSAPEG00000011337) #20	atg4c (ENSAPEG00000011253) #21	foxd3 (ENSAPEG00000011219) #22	alg6 (ENSAPEG00000011082) #23	efcab7 (ENSAPEG00000011064) #26	pgm1 (ENSAPEG00000011051) ##27	ROR1 (ENSAPEG00000011000) #28	CACHD1 (ENSAPEG00000010866) #30	ENSAPEG00000010843 #31	ENSAPEG00000010823 #31	jak1 (ENSAPEG00000010718) #32	ak4 (ENSAPEG00000010665) #37	DNAJC6 (ENSAPEG00000010577)	lepr (ENSAPEG00000010492)	lurap1 (ENSAPEG00000010457)	TTC22 (ENSAPEG00000010414)	ENSAPEG00000010150	ENSAPEG00000010081
Clown anemonefish	MODERN SPECIES	1485											ENSAOCG00000006972 #17	usp1 (ENSAOCG00000000354) #18	DOCK7 (ENSAOCG00000006833) #20	angptl3 (ENSAOCG00000006710) #19	atg4c (ENSAOCG00000000325) #21	foxd3 (ENSAOCG00000006661) #22	alg6 (ENSAOCG00000006646) #23	efcab7 (ENSAOCG00000006630) #26	pgm1 (ENSAOCG00000002778) ##27	ROR1 (ENSAOCG00000006584) #28
Spiny chromis	MODERN SPECIES	715												usp1 (ENSAPOG00000016472) #18	angptl3 (ENSAPOG00000016474) #19	DOCK7 (ENSAPOG00000016681) #20	atg4c (ENSAPOG00000016745) #21	foxd3 (ENSAPOG00000016774) #22	alg6 (ENSAPOG00000016789) #23	efcab7 (ENSAPOG00000016799) #26	ENSAPOG00000016813 ##27
Cichlidae	ANCESTRAL SPECIES	43	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000158600
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00940000177278.b	ENSGT00950000182866.D.d.a.c.b.a.a.b.a
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a.f	ENSGT00940000154819.a.a.a.e.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00940000177278.b	ENSGT00950000182866.D.d.a.c.b.a.a.b.a
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a.f	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00940000177278.b	ENSGT00900000141362.a.b.c.b
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000006224	ENSGT00390000014984	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a.e.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B.f #28	ENSGT00940000153947.B.e.a #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00940000177278.b
Eastern happy	MODERN SPECIES	8	mpl (ENSACLG00000000517)	tie1 (ENSACLG00000000607)	ap1m3 (ENSACLG00000000706)	TMEM125 (ENSACLG00000000746)	cfap144 (ENSACLG00000000750)	ebna1bp2 (ENSACLG00000000761)	dmrt2b (ENSACLG00000000766)	ENSACLG00000000769	lrp8 (ENSACLG00000000909)	ENSACLG00000000991 #17	usp1 (ENSACLG00000001049) #18	DOCK7 (ENSACLG00000001061) #20	angptl3 (ENSACLG00000001438) #19	atg4c (ENSACLG00000001458) #21	ENSACLG00000001479	foxd3 (ENSACLG00000001505) #22	alg6 (ENSACLG00000001523) #23	ENSACLG00000001570	efcab7 (ENSACLG00000001579) #26	pgm1 (ENSACLG00000001599) ##27	ENSACLG00000001611 #28	ROR1 (ENSACLG00000001650) #28	ENSACLG00000001704	CACHD1 (ENSACLG00000001723) #30	RAVER2 (ENSACLG00000001840) #31	jak1 (ENSACLG00000001880) #32	ak4 (ENSACLG00000001952) #37	DNAJC6 (ENSACLG00000001981)	lepr (ENSACLG00000002030)	lurap1 (ENSACLG00000002086)	TTC22 (ENSACLG00000002093)
Zebra mbuna	MODERN SPECIES	28											ENSMZEG00005012637 #17	usp1 (ENSMZEG00005012615) #18	angptl3 (ENSMZEG00005012607) #19	DOCK7 (ENSMZEG00005012569) #20	atg4c (ENSMZEG00005012546) #21	foxd3 (ENSMZEG00005012536) #22	alg6 (ENSMZEG00005012524) #23	efcab7 (ENSMZEG00005012504) #26	pgm1 (ENSMZEG00005012486) ##27	ROR1 (ENSMZEG00005012430) #28
P. nyererei	MODERN SPECIES	367	ccn1 (ENSPNYG00000016727)	DDAH1 (ENSPNYG00000016743)	mpl (ENSPNYG00000016776)	tie1 (ENSPNYG00000016849)	ap1m3 (ENSPNYG00000016944)	TMEM125 (ENSPNYG00000017049)	ebna1bp2 (ENSPNYG00000017056)	cfap144 (ENSPNYG00000017073)	dmrt2b (ENSPNYG00000017094)	lrp8 (ENSPNYG00000017130)	ENSPNYG00000017275 #17	usp1 (ENSPNYG00000017300) #18	DOCK7 (ENSPNYG00000017359) #20	angptl3 (ENSPNYG00000017465) #19	atg4c (ENSPNYG00000017474) #21	foxd3 (ENSPNYG00000017501) #22	alg6 (ENSPNYG00000017515) #23	efcab7 (ENSPNYG00000017537) #26	pgm1 (ENSPNYG00000017642) ##27	ENSPNYG00000017652 #28	ENSPNYG00000017662 #28
Burton s mouthbrooder	MODERN SPECIES	677										ENSHBUG00000020351 #17	usp1 (ENSHBUG00000020367) #18	ENSHBUG00000020401 #20	angptl3 (ENSHBUG00000020413) #19	DOCK7 (ENSHBUG00000020521) #20	atg4c (ENSHBUG00000020559) #21	foxd3 (ENSHBUG00000020578) #22	alg6 (ENSHBUG00000020588) #23	efcab7 (ENSHBUG00000001008) #26	pgm1 (ENSHBUG00000000626) ##27	ROR1 (ENSHBUG00000020614) #28
Lyretail cichlid	MODERN SPECIES	403	ENSNBRG00000019131	ccn1 (ENSNBRG00000019125)	DDAH1 (ENSNBRG00000019097)	mpl (ENSNBRG00000019046)	tie1 (ENSNBRG00000018998)	ap1m3 (ENSNBRG00000018957)	TMEM125 (ENSNBRG00000018951)	ebna1bp2 (ENSNBRG00000018937)	cfap144 (ENSNBRG00000018925)	dmrt2b (ENSNBRG00000018922)	lrp8 (ENSNBRG00000018817)	usp1 (ENSNBRG00000018780) #18	angptl3 (ENSNBRG00000018766) #19	DOCK7 (ENSNBRG00000018674) #20	atg4c (ENSNBRG00000018639) #21	foxd3 (ENSNBRG00000018617) #22	alg6 (ENSNBRG00000018550) #23	efcab7 (ENSNBRG00000018471) #26	pgm1 (ENSNBRG00000018454) ##27
Nile tilapia	MODERN SPECIES	8	DDAH1 (ENSONIG00000008864)	mpl (ENSONIG00000008863)	tie1 (ENSONIG00000008859)	ap1m3 (ENSONIG00000008857)	TMEM125 (ENSONIG00000040110)	ebna1bp2 (ENSONIG00000008855)	cfap144 (ENSONIG00000030426)	dmrt2b (ENSONIG00000008852)	ENSONIG00000032859	lrp8 (ENSONIG00000008841)	ENSONIG00000041601 #17	usp1 (ENSONIG00000008834) #18	DOCK7 (ENSONIG00000008826) #20	angptl3 (ENSONIG00000008833) #19	atg4c (ENSONIG00000008825) #21	foxd3 (ENSONIG00000021415) #22	alg6 (ENSONIG00000008823) #23	pgm1 (ENSONIG00000008819) ##27	ROR1 (ENSONIG00000008814) #28	CACHD1 (ENSONIG00000008810) #30	ENSONIG00000008813	RAVER2 (ENSONIG00000008808) #31	jak1 (ENSONIG00000008800) #32	ak4 (ENSONIG00000008798) #37	DNAJC6 (ENSONIG00000008789)	lepr (ENSONIG00000011926)	lurap1 (ENSONIG00000037764)	ENSONIG00000011923	ENSONIG00000011921	ENSONIG00000009981	ccl25b (ENSONIG00000040787)
Midas cichlid	MODERN SPECIES	314	DDAH1 (ENSACIG00000011259)	mpl (ENSACIG00000011289)	tie1 (ENSACIG00000011396)	tie1 (ENSACIG00000011429)	ap1m3 (ENSACIG00000011475)	TMEM125 (ENSACIG00000011511)	ebna1bp2 (ENSACIG00000011514)	cfap144 (ENSACIG00000011543)	dmrt2b (ENSACIG00000011552)	lrp8 (ENSACIG00000011565)	ENSACIG00000011668 #17	usp1 (ENSACIG00000011684) #18	DOCK7 (ENSACIG00000011717) #20	angptl3 (ENSACIG00000011832) #19	atg4c (ENSACIG00000011861) #21	foxd3 (ENSACIG00000011882) #22	alg6 (ENSACIG00000011891) #23	efcab7 (ENSACIG00000011953) #26	pgm1 (ENSACIG00000011996) ##27	ROR1 (ENSACIG00000012131) #28	CACHD1 (ENSACIG00000012163) #30	ENSACIG00000012229 #31	ENSACIG00000012240 #31	jak1 (ENSACIG00000012257) #32	ak4 (ENSACIG00000012335) #37	DNAJC6 (ENSACIG00000012354)	lepr (ENSACIG00000012411)	lurap1 (ENSACIG00000012456)	TTC22 (ENSACIG00000012477)	ENSACIG00000012512	ENSACIG00000012532
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT01030000235036	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000156746.a #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00960000186686	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Tetraodon	MODERN SPECIES		ccn1 (ENSTNIG00000018087)	DDAH1 (ENSTNIG00000018088)	mpl (ENSTNIG00000001802)	tie1 (ENSTNIG00000018089)	ap1m3 (ENSTNIG00000018090)	TMEM125 (ENSTNIG00000018091)	ebna1bp2 (ENSTNIG00000018092)	dmrt2b (ENSTNIG00000018093)	ENSTNIG00000018094	ENSTNIG00000000768	lrp8 (ENSTNIG00000018095)	KANK4 (ENSTNIG00000018096) #17	usp1 (ENSTNIG00000018097) #18	DOCK7 (ENSTNIG00000018098) #20	atg4c (ENSTNIG00000018099) #21	foxd3 (ENSTNIG00000018100) #22	alg6 (ENSTNIG00000018101) #23	ENSTNIG00000018102	efcab7 (ENSTNIG00000018103) #26	pgm1 (ENSTNIG00000018104) ##27	ROR1 (ENSTNIG00000018105) #28	RAVER2 (ENSTNIG00000018106) #31	jak1 (ENSTNIG00000018107) #32	ak4 (ENSTNIG00000018108) #37	DNAJC6 (ENSTNIG00000018109)	lepr (ENSTNIG00000001810)	lurap1 (ENSTNIG00000018110)	TTC22 (ENSTNIG00000018111)	ENSTNIG00000000173	ttc4 (ENSTNIG00000018112)	pars2 (ENSTNIG00000018113)
Fugu	MODERN SPECIES	12	mpl (ENSTRUG00000018473)	tie1 (ENSTRUG00000018474)	ENSTRUG00000021015	ap1m3 (ENSTRUG00000018481)	ENSTRUG00000020153	TMEM125 (ENSTRUG00000018482)	ebna1bp2 (ENSTRUG00000018483)	ENSTRUG00000021155	dmrt2b (ENSTRUG00000018484)	lrp8 (ENSTRUG00000018485)	ENSTRUG00000024040 #17	usp1 (ENSTRUG00000018500) #18	angptl3 (ENSTRUG00000018512) #19	DOCK7 (ENSTRUG00000018504) #20	atg4c (ENSTRUG00000018516) #21	foxd3 (ENSTRUG00000018523) #22	alg6 (ENSTRUG00000018524) #23	efcab7 (ENSTRUG00000018532) #26	ROR1 (ENSTRUG00000003110) #28	CACHD1 (ENSTRUG00000018536) #30	RAVER2 (ENSTRUG00000018541) #31	jak1 (ENSTRUG00000018544) #32	ak4 (ENSTRUG00000023333) #37	ENSTRUG00000022954	DNAJC6 (ENSTRUG00000018550)	lepr (ENSTRUG00000018553)	lurap1 (ENSTRUG00000026447)	TTC22 (ENSTRUG00000018557)	ENSTRUG00000025886	ENSTRUG00000025652	pars2 (ENSTRUG00000018560)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Ballan wrasse	MODERN SPECIES	60	mpl (ENSLBEG00000013944)	tie1 (ENSLBEG00000014097)	ENSLBEG00000014162	ap1m3 (ENSLBEG00000014192)	TMEM125 (ENSLBEG00000014238)	ebna1bp2 (ENSLBEG00000014254)	cfap144 (ENSLBEG00000014289)	dmrt2b (ENSLBEG00000014310)	lrp8 (ENSLBEG00000014339)	ENSLBEG00000014376	ENSLBEG00000014408 #17	usp1 (ENSLBEG00000014440) #18	DOCK7 (ENSLBEG00000014487) #20	angptl3 (ENSLBEG00000014596) #19	atg4c (ENSLBEG00000014620) #21	foxd3 (ENSLBEG00000014689) #22	alg6 (ENSLBEG00000014709) #23	efcab7 (ENSLBEG00000014769) #26	pgm1 (ENSLBEG00000014793) ##27	ROR1 (ENSLBEG00000014821) #28	hps3 (ENSLBEG00000014861)	dnajc19 (ENSLBEG00000014900)	ENSLBEG00000014934	ENSLBEG00000014976	ENSLBEG00000014994	ENSLBEG00000015015	ENSLBEG00000015049	rgs4 (ENSLBEG00000015063)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000156746.a #19	ENSGT00940000155661 #20	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Gilthead seabream	MODERN SPECIES	2	DDAH1 (ENSSAUG00010022757)	mpl (ENSSAUG00010022753)	tie1 (ENSSAUG00010022142)	ap1m3 (ENSSAUG00010022122)	TMEM125 (ENSSAUG00010022120)	ENSSAUG00010022119	ebna1bp2 (ENSSAUG00010022118)	cfap144 (ENSSAUG00010022117)	dmrt2b (ENSSAUG00010022116)	lrp8 (ENSSAUG00010022033)	ENSSAUG00010022031 #17	usp1 (ENSSAUG00010022029) #18	angptl3 (ENSSAUG00010022028) #19	DOCK7 (ENSSAUG00010014788) #20	atg4c (ENSSAUG00010014660) #21	foxd3 (ENSSAUG00010014658) #22	alg6 (ENSSAUG00010014655) #23	pgm1 (ENSSAUG00010014466) ##27	ROR1 (ENSSAUG00010014450) #28	CACHD1 (ENSSAUG00010013527) #30	RAVER2 (ENSSAUG00010013513) #31	jak1 (ENSSAUG00010010552) #32	ak4 (ENSSAUG00010010528) #37	DNAJC6 (ENSSAUG00010010521)	ndufs7 (ENSSAUG00010010516)	gamt (ENSSAUG00010010513)	dazap1 (ENSSAUG00010010505)	dpp9 (ENSSAUG00010009992)	ANGPTL4 (ENSSAUG00010009976)	kank3 (ENSSAUG00010009972)	ENSSAUG00010009970
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Large yellow croaker	MODERN SPECIES	489	ccn1 (ENSLCRG00005011076)	DDAH1 (ENSLCRG00005011074)	mpl (ENSLCRG00005011070)	tie1 (ENSLCRG00005010424)	ap1m3 (ENSLCRG00005009670)	TMEM125 (ENSLCRG00005009641)	ebna1bp2 (ENSLCRG00005009633)	ENSLCRG00005009630	dmrt2b (ENSLCRG00005009628)	lrp8 (ENSLCRG00005009173)	ENSLCRG00005009142 #17	usp1 (ENSLCRG00005009140) #18	angptl3 (ENSLCRG00005009138) #19	DOCK7 (ENSLCRG00005006553) #20	atg4c (ENSLCRG00005006533) #21	foxd3 (ENSLCRG00005006532) #22	alg6 (ENSLCRG00005006529) #23	efcab7 (ENSLCRG00005006380) #26	pgm1 (ENSLCRG00005006214) ##27	ROR1 (ENSLCRG00005006204) #28	CACHD1 (ENSLCRG00005005618) #30	RAVER2 (ENSLCRG00005005602) #31	jak1 (ENSLCRG00005005113) #32	ak4 (ENSLCRG00005005102) #37	ENSLCRG00005005101	DNAJC6 (ENSLCRG00005005100)	lepr (ENSLCRG00005002140)	lurap1 (ENSLCRG00005002102)	TTC22 (ENSLCRG00005002092)	ENSLCRG00005002076	ENSLCRG00005002043
European seabass	MODERN SPECIES	17	DDAH1 (ENSDLAG00005020085)	mpl (ENSDLAG00005020097)	tie1 (ENSDLAG00005020157)	ENSDLAG00005021095	ap1m3 (ENSDLAG00005021106)	TMEM125 (ENSDLAG00005029558)	EBNA1BP2 (ENSDLAG00005021282)	cfap144 (ENSDLAG00005021357)	dmrt2b (ENSDLAG00005021365)	lrp8 (ENSDLAG00005021385)	ENSDLAG00005021683 #17	usp1 (ENSDLAG00005021691) #18	DOCK7 (ENSDLAG00005021872) #20	angptl3 (ENSDLAG00005024920) #19	atg4c (ENSDLAG00005024924) #21	foxd3 (ENSDLAG00005029908) #22	alg6 (ENSDLAG00005024933) #23	efcab7 (ENSDLAG00005024938) #26	ROR1 (ENSDLAG00005024991) #28	CACHD1 (ENSDLAG00005025014) #30	RAVER2 (ENSDLAG00005025087) #31	jak1 (ENSDLAG00005025117) #32	ak4 (ENSDLAG00005025351) #37	DNAJC6 (ENSDLAG00005025352)	ENSDLAG00005025356	lepr (ENSDLAG00005025384)	lurap1 (ENSDLAG00005032468)	ENSDLAG00005025606	ENSDLAG00005027686	ENSDLAG00005025607	pars2 (ENSDLAG00005033834)
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000157693	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725	ENSGT01030000235036	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT01030000235036	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Channel bull blenny	MODERN SPECIES	18	DDAH1 (ENSCGOG00000019055)	mpl (ENSCGOG00000019058)	tie1 (ENSCGOG00000019073)	ENSCGOG00000019218	ap1m3 (ENSCGOG00000019245)	TMEM125 (ENSCGOG00000019668)	ebna1bp2 (ENSCGOG00000019670)	cfap144 (ENSCGOG00000019698)	dmrt2b (ENSCGOG00000019704)	lrp8 (ENSCGOG00000019708)	ENSCGOG00000019731 #17	usp1 (ENSCGOG00000019734) #18	DOCK7 (ENSCGOG00000019797) #20	angptl3 (ENSCGOG00000021500) #19	atg4c (ENSCGOG00000021507) #21	foxd3 (ENSCGOG00000021545) #22	alg6 (ENSCGOG00000021549) #23	efcab7 (ENSCGOG00000021628) #26	pgm1 (ENSCGOG00000021634) ##27	ROR1 (ENSCGOG00000021842) #28	CACHD1 (ENSCGOG00000021855) #30	RAVER2 (ENSCGOG00000021927) #31	jak1 (ENSCGOG00000021992) #32	ak4 (ENSCGOG00000023162) #37	DNAJC6 (ENSCGOG00000023168)	ENSCGOG00000000071	lepr (ENSCGOG00000000237)	lurap1 (ENSCGOG00000000298)	TTC22 (ENSCGOG00000000300)	ENSCGOG00000000301	ENSCGOG00000000302
Pike perch	MODERN SPECIES	61	tie1 (ENSSLUG00000023059)	ENSSLUG00000023036	ap1m3 (ENSSLUG00000022997)	ENSSLUG00000022990	TMEM125 (ENSSLUG00000022988)	ebna1bp2 (ENSSLUG00000022980)	ENSSLUG00000022976	dmrt2b (ENSSLUG00000022973)	lrp8 (ENSSLUG00000022227)	ENSSLUG00000022166 #17	ENSSLUG00000022164 #17	usp1 (ENSSLUG00000022162) #18	angptl3 (ENSSLUG00000022156) #19	DOCK7 (ENSSLUG00000018937) #20	atg4c (ENSSLUG00000018617) #21	foxd3 (ENSSLUG00000018614) #22	alg6 (ENSSLUG00000018596) #23	efcab7 (ENSSLUG00000018528) #26	ROR1 (ENSSLUG00000018507) #28	CACHD1 (ENSSLUG00000018445) #30	ENSSLUG00000018432 #31	ENSSLUG00000018425 #31	jak1 (ENSSLUG00000013395) #32	ak4 (ENSSLUG00000013248) #37	ENSSLUG00000013246	DNAJC6 (ENSSLUG00000013233)	lepr (ENSSLUG00000011748)	lurap1 (ENSSLUG00000011692)	TTC22 (ENSSLUG00000011687)	ENSSLUG00000011681	ENSSLUG00000011662
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000166530	ENSGT00940000157693	ENSGT00510000048988	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648.l #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a	ENSGT00510000049371
Lumpfish	MODERN SPECIES	19	DDAH1 (ENSCLMG00005010679)	mpl (ENSCLMG00005010680)	tie1 (ENSCLMG00005010687)	C1orf210 (ENSCLMG00005010694)	ap1m3 (ENSCLMG00005010707)	TMEM125 (ENSCLMG00005011994)	ebna1bp2 (ENSCLMG00005011995)	cfap144 (ENSCLMG00005011996)	dmrt2b (ENSCLMG00005011999)	lrp8 (ENSCLMG00005012031)	ENSCLMG00005013303 #17	usp1 (ENSCLMG00005013306) #18	DOCK7 (ENSCLMG00005013341) #20	angptl3 (ENSCLMG00005014829) #19	atg4c (ENSCLMG00005014832) #21	foxd3 (ENSCLMG00005014921) #22	alg6 (ENSCLMG00005014922) #23	pgm1 (ENSCLMG00005014936) ##27	efcab7 (ENSCLMG00005014993) #26	ROR1 (ENSCLMG00005014994) #28	CACHD1 (ENSCLMG00005014999) #30	ENSCLMG00005015109 #31	jak1 (ENSCLMG00005015131) #32	ak4 (ENSCLMG00005015473) #37	DNAJC6 (ENSCLMG00005015480)	lepr (ENSCLMG00005015938)	lurap1 (ENSCLMG00005015960)	TTC22 (ENSCLMG00005015962)	ENSCLMG00005015964	ENSCLMG00005015965	ttc4 (ENSCLMG00005015967)
Stickleback	MODERN SPECIES	8	mpl (ENSGACG00000006723)	tie1 (ENSGACG00000006730)	ENSGACG00000006751	ap1m3 (ENSGACG00000006754)	TMEM125 (ENSGACG00000006799)	ebna1bp2 (ENSGACG00000006802)	dmrt2b (ENSGACG00000006816)	ENSGACG00000006820	ENSGACG00000006825	lrp8 (ENSGACG00000006827)	KANK4 (ENSGACG00000006846) #17	usp1 (ENSGACG00000006853) #18	DOCK7 (ENSGACG00000006859) #20	angptl3 (ENSGACG00000006902) #19	atg4c (ENSGACG00000006923) #21	foxd3 (ENSGACG00000006933) #22	alg6 (ENSGACG00000006934) #23	efcab7 (ENSGACG00000006949) #26	pgm1 (ENSGACG00000006964) ##27	ROR1 (ENSGACG00000007064) #28	CACHD1 (ENSGACG00000007086) #30	RAVER2 (ENSGACG00000007122) #31	jak1 (ENSGACG00000007145) #32	ak4 (ENSGACG00000007168) #37	DNAJC6 (ENSGACG00000007183)	lepr (ENSGACG00000007200)	TTC22 (ENSGACG00000007207)	ttc4 (ENSGACG00000007214)	pars2 (ENSGACG00000007240)	SGIP1 (ENSGACG00000007249)	PDE4B (ENSGACG00000007263)
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00940000157892	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661.eb #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Turbot	MODERN SPECIES	3	DDAH1 (ENSSMAG00000020576)	mpl (ENSSMAG00000020577)	tie1 (ENSSMAG00000020579)	ENSSMAG00000020595	ap1m3 (ENSSMAG00000020596)	TMEM125 (ENSSMAG00000020599)	EBNA1BP2 (ENSSMAG00000020600)	cfap144 (ENSSMAG00000024002)	dmrt2b (ENSSMAG00000020606)	lrp8 (ENSSMAG00000020607)	ENSSMAG00000020611 #17	usp1 (ENSSMAG00000020612) #18	DOCK7 (ENSSMAG00000020614) #20	angptl3 (ENSSMAG00000020623) #19	atg4c (ENSSMAG00000020625) #21	foxd3 (ENSSMAG00000020628) #22	alg6 (ENSSMAG00000020629) #23	efcab7 (ENSSMAG00000020635) #26	ROR1 (ENSSMAG00000020638) #28	CACHD1 (ENSSMAG00000020646) #30	RAVER2 (ENSSMAG00000031863) #31	jak1 (ENSSMAG00000020659) #32	ak4 (ENSSMAG00000020666) #37	DNAJC6 (ENSSMAG00000020667)	ENSSMAG00000020685	lepr (ENSSMAG00000020687)	lurap1 (ENSSMAG00000020696)	ENSSMAG00000020697	ENSSMAG00000020700	ENSSMAG00000024338	ttc4 (ENSSMAG00000020701)
Tongue sole	MODERN SPECIES	11	pex11g (ENSCSEG00000018312)	APBA3 (ENSCSEG00000018302)	ABCA7 (ENSCSEG00000018225)	r3hdm4 (ENSCSEG00000018211)	ENSCSEG00000018194	ENSCSEG00000018184	ndufs7 (ENSCSEG00000018178)	gamt (ENSCSEG00000018172)	dazap1 (ENSCSEG00000018162)	dpp9 (ENSCSEG00000018127)	ANGPTL4 (ENSCSEG00000018112)	ENSCSEG00000018091 #20	angptl3 (ENSCSEG00000018084) #19	ENSCSEG00000018001 #20	atg4c (ENSCSEG00000017978) #21	foxd3 (ENSCSEG00000017971) #22	alg6 (ENSCSEG00000017962) #23	efcab7 (ENSCSEG00000017946) #26	pgm1 (ENSCSEG00000017937) ##27	ROR1 (ENSCSEG00000017917) #28	CACHD1 (ENSCSEG00000017866) #30	RAVER2 (ENSCSEG00000017839) #31	jak1 (ENSCSEG00000017797) #32	ak4 (ENSCSEG00000017778) #37	ENSCSEG00000017774	DNAJC6 (ENSCSEG00000017751)	lepr (ENSCSEG00000017688)	lurap1 (ENSCSEG00000017682)	TTC22 (ENSCSEG00000017664)	ENSCSEG00000017630	ENSCSEG00000017620
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Barramundi perch	MODERN SPECIES	22												tent5bb (ENSLCAG00010011092)	angptl3 (ENSLCAG00010011090) #19	DOCK7 (ENSLCAG00010010587) #20	atg4c (ENSLCAG00010010458) #21	foxd3 (ENSLCAG00010010455) #22	alg6 (ENSLCAG00010010452) #23	pgm1 (ENSLCAG00010010380) ##27	ROR1 (ENSLCAG00010010349) #28	CACHD1 (ENSLCAG00010010274) #30	RAVER2 (ENSLCAG00010010263) #31	jak1 (ENSLCAG00010009784) #32	ak4 (ENSLCAG00010009676) #37	ENSLCAG00010009673	DNAJC6 (ENSLCAG00010009667)	lepr (ENSLCAG00010009352)	lurap1 (ENSLCAG00010009302)	TTC22 (ENSLCAG00010009297)	ENSLCAG00010009290	ENSLCAG00010009286	ENSLCAG00010009285
Seriola	ANCESTRAL SPECIES		ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000155542.a ##27	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00960000186686	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a
Yellowtail amberjack	MODERN SPECIES	3236	mpl (ENSSLDG00000001315)	tie1 (ENSSLDG00000001435)	ENSSLDG00000001471	ap1m3 (ENSSLDG00000001499)	TMEM125 (ENSSLDG00000001546)	cfap144 (ENSSLDG00000001561)	ebna1bp2 (ENSSLDG00000001599)	dmrt2b (ENSSLDG00000001642)	lrp8 (ENSSLDG00000001676)	ENSSLDG00000001852	ENSSLDG00000001872 #17	usp1 (ENSSLDG00000001903) #18	DOCK7 (ENSSLDG00000001963) #20	angptl3 (ENSSLDG00000002276) #19	atg4c (ENSSLDG00000002291) #21	foxd3 (ENSSLDG00000002349) #22	alg6 (ENSSLDG00000002370) #23	efcab7 (ENSSLDG00000002393) #26	pgm1 (ENSSLDG00000002424) ##27	ROR1 (ENSSLDG00000002496) #28	CACHD1 (ENSSLDG00000002572) #30	RAVER2 (ENSSLDG00000002746) #31	jak1 (ENSSLDG00000002783) #32	ak4 (ENSSLDG00000002905) #37	DNAJC6 (ENSSLDG00000002957)	ENSSLDG00000003081	lepr (ENSSLDG00000003111)	lurap1 (ENSSLDG00000003182)	TTC22 (ENSSLDG00000003209)	ENSSLDG00000003247	ttc4 (ENSSLDG00000003275)
Greater amberjack	MODERN SPECIES		tie1 (ENSSDUG00000013845)	ENSSDUG00000013836	ap1m3 (ENSSDUG00000013819)	TMEM125 (ENSSDUG00000013814)	ENSSDUG00000013802	ebna1bp2 (ENSSDUG00000013791)	cfap144 (ENSSDUG00000013778)	dmrt2b (ENSSDUG00000013770)	lrp8 (ENSSDUG00000013739)	ENSSDUG00000013717 #17	usp1 (ENSSDUG00000013703) #18	ENSSDUG00000013685 #20	angptl3 (ENSSDUG00000013655) #19	DOCK7 (ENSSDUG00000013589) #20	atg4c (ENSSDUG00000013562) #21	foxd3 (ENSSDUG00000013552) #22	alg6 (ENSSDUG00000013498) #23	efcab7 (ENSSDUG00000013363) #26	pgm1 (ENSSDUG00000013333) ##27	ROR1 (ENSSDUG00000013244) #28	CACHD1 (ENSSDUG00000013103) #30	RAVER2 (ENSSDUG00000013065) #31	jak1 (ENSSDUG00000013009) #32	ak4 (ENSSDUG00000012973) #37	DNAJC6 (ENSSDUG00000012843)	lepr (ENSSDUG00000012805)	lurap1 (ENSSDUG00000012795)	TTC22 (ENSSDUG00000012776)	ENSSDUG00000012696	ENSSDUG00000012675	ttc4 (ENSSDUG00000012666)
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.a	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000174981
Zig-zag eel	MODERN SPECIES	18	DDAH1 (ENSMAMG00000009804)	mpl (ENSMAMG00000009787)	tie1 (ENSMAMG00000009664)	ap1m3 (ENSMAMG00000009607)	TMEM125 (ENSMAMG00000009594)	EBNA1BP2 (ENSMAMG00000009561)	ENSMAMG00000025371	ENSMAMG00000026541	dmrt2b (ENSMAMG00000009514)	lrp8 (ENSMAMG00000009490)	ENSMAMG00000009441 #17	usp1 (ENSMAMG00000009419) #18	DOCK7 (ENSMAMG00000009279) #20	angptl3 (ENSMAMG00000009397) #19	atg4c (ENSMAMG00000009246) #21	foxd3 (ENSMAMG00000009229) #22	alg6 (ENSMAMG00000009216) #23	efcab7 (ENSMAMG00000009169) #26	ROR1 (ENSMAMG00000009136) #28	CACHD1 (ENSMAMG00000009078) #30	ENSMAMG00000026466 #31	ENSMAMG00000009059 #31	ENSMAMG00000027617 #31	jak1 (ENSMAMG00000009020) #32	ak4 (ENSMAMG00000008991) #37	DNAJC6 (ENSMAMG00000008975)	lepr (ENSMAMG00000008942)	ENSMAMG00000008909	lurap1 (ENSMAMG00000008928)	ENSMAMG00000028113	ENSMAMG00000028734
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000166530	ENSGT00940000157693	ENSGT01030000234931	ENSGT00940000166725	ENSGT00390000003015.c	ENSGT01030000235036	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000156282.a.b	ENSGT00940000154819.a.a.a	ENSGT00940000158468.a.b #17	ENSGT00910000144243 #18	ENSGT00940000155661 #20	ENSGT00940000156746.a #19	ENSGT00530000063000.a.a.a #21	ENSGT00940000161645.b #22	ENSGT00940000153733.B #23	ENSGT00390000015466 #26	ENSGT00940000153947.B #28	ENSGT00940000157568 #30	ENSGT00940000158648 #31	ENSGT00940000157092 #32	ENSGT00940000154568 #37	ENSGT00940000158755	ENSGT00730000111209	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.a	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000174981
Climbing perch	MODERN SPECIES	17	tie1 (ENSATEG00000020549)	ENSATEG00000020505	ap1m3 (ENSATEG00000020473)	TMEM125 (ENSATEG00000020464)	ENSATEG00000027683	EBNA1BP2 (ENSATEG00000020458)	cfap144 (ENSATEG00000026752)	dmrt2b (ENSATEG00000025554)	lrp8 (ENSATEG00000020413)	ENSATEG00000020377 #17	ENSATEG00000020371 #17	usp1 (ENSATEG00000020340) #18	angptl3 (ENSATEG00000020322) #19	DOCK7 (ENSATEG00000020135) #20	atg4c (ENSATEG00000020019) #21	foxd3 (ENSATEG00000019995) #22	alg6 (ENSATEG00000019947) #23	efcab7 (ENSATEG00000019920) #26	ROR1 (ENSATEG00000019870) #28	CACHD1 (ENSATEG00000019771) #30	RAVER2 (ENSATEG00000019679) #31	jak1 (ENSATEG00000019610) #32	ak4 (ENSATEG00000019585) #37	DNAJC6 (ENSATEG00000019494)	lepr (ENSATEG00000019438)	lurap1 (ENSATEG00000028563)	ENSATEG00000019408	ENSATEG00000019391	ENSATEG00000025420	ENSATEG00000029474	ttc4 (ENSATEG00000019340)
Siamese fighting fish	MODERN SPECIES	15	ccn1 (ENSBSLG00000007803)	DDAH1 (ENSBSLG00000007819)	mpl (ENSBSLG00000007830)	tie1 (ENSBSLG00000007924)	ap1m3 (ENSBSLG00000008999)	TMEM125 (ENSBSLG00000009268)	ebna1bp2 (ENSBSLG00000009290)	cfap144 (ENSBSLG00000009380)	dmrt2b (ENSBSLG00000009401)	lrp8 (ENSBSLG00000009794)	ENSBSLG00000010124 #17	usp1 (ENSBSLG00000010617) #18	DOCK7 (ENSBSLG00000011128) #20	angptl3 (ENSBSLG00000018338) #19	atg4c (ENSBSLG00000018355) #21	foxd3 (ENSBSLG00000018400) #22	alg6 (ENSBSLG00000018410) #23	efcab7 (ENSBSLG00000018489) #26	ROR1 (ENSBSLG00000018768) #28	CACHD1 (ENSBSLG00000018891) #30	RAVER2 (ENSBSLG00000019210) #31	jak1 (ENSBSLG00000019279) #32	ak4 (ENSBSLG00000020075) #37	DNAJC6 (ENSBSLG00000020088)	lepr (ENSBSLG00000020123)	lurap1 (ENSBSLG00000020302)	TTC22 (ENSBSLG00000020303)	ENSBSLG00000020309	ENSBSLG00000020324	ttc4 (ENSBSLG00000020328)	pars2 (ENSBSLG00000020357)
Pinecone sodierfish	MODERN SPECIES	18	mpl (ENSMMDG00005023157)	tie1 (ENSMMDG00005023146)	tie1 (ENSMMDG00005023144)	C1orf210 (ENSMMDG00005023139)	ap1m3 (ENSMMDG00005023094)	TMEM125 (ENSMMDG00005023085)	ebna1bp2 (ENSMMDG00005023080)	cfap144 (ENSMMDG00005023077)	dmrt2b (ENSMMDG00005023072)	lrp8 (ENSMMDG00005022915)	ENSMMDG00005022895 #17	usp1 (ENSMMDG00005022894) #18	angptl3 (ENSMMDG00005022893) #19	DOCK7 (ENSMMDG00005021534) #20	atg4c (ENSMMDG00005021412) #21	foxd3 (ENSMMDG00005021408) #22	alg6 (ENSMMDG00005021405) #23	efcab7 (ENSMMDG00005021377) #26	ROR1 (ENSMMDG00005021361) #28	CACHD1 (ENSMMDG00005021338) #30	RAVER2 (ENSMMDG00005021327) #31	jak1 (ENSMMDG00005017951) #32	ak4 (ENSMMDG00005017810) #37	DNAJC6 (ENSMMDG00005016903)	lepr (ENSMMDG00005014378)	lurap1 (ENSMMDG00005014312)	TTC22 (ENSMMDG00005014309)	ENSMMDG00005014306	ttc4 (ENSMMDG00005014269)	pars2 (ENSMMDG00005014267)	dnai4 (ENSMMDG00005014145)
Cod	MODERN SPECIES	3	ENSGMOG00000017124	ENSGMOG00000025150	MYLK4 (ENSGMOG00000017147)	ENSGMOG00000023052	serpinb1 (ENSGMOG00000013968)	ENSGMOG00000013987	ENSGMOG00000031940	ENSGMOG00000014035	ENSGMOG00000026391	ENSGMOG00000014076	ENSGMOG00000014110	ENSGMOG00000033442 #17	angptl3 (ENSGMOG00000018204) #19	DOCK7 (ENSGMOG00000018152) #20	atg4c (ENSGMOG00000018222) #21	foxd3 (ENSGMOG00000018243) #22	alg6 (ENSGMOG00000018248) #23	efcab7 (ENSGMOG00000018297) #26	ENSGMOG00000026849	ENSGMOG00000029635	ROR1 (ENSGMOG00000011015) #28	CACHD1 (ENSGMOG00000013506) #30	ENSGMOG00000032384	ENSGMOG00000033732	RAVER2 (ENSGMOG00000013535) #31	ENSGMOG00000025142	jak1 (ENSGMOG00000003132) #32	ak4 (ENSGMOG00000005800) #37	DNAJC6 (ENSGMOG00000005812)	ENSGMOG00000025178 #7	ENSGMOG00000012322